BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034671
         (87 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q7NM86|MNMG_GLOVI tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
           OS=Gloeobacter violaceus (strain PCC 7421) GN=mnmG PE=3
           SV=1
          Length = 656

 Score = 30.4 bits (67), Expect = 3.7,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 1/68 (1%)

Query: 5   GIFLSKRVQELVLNGEEPPASYICRDGDSIQEVSAPLSPVPIIDLSLLSSSTLCAKQEEE 64
           G+ L  +V+E V   E   + YI R  + I+ VSA  + V   DL     STL  +  E+
Sbjct: 555 GVLLDAQVREGV-EIEVKYSGYIERQNEQIERVSAQHARVIPADLDYERLSTLSKESREK 613

Query: 65  LHKLRSLT 72
           L+++R  T
Sbjct: 614 LNRIRPRT 621


>sp|F1QWK4|MCA3B_DANRE Protein-methionine sulfoxide oxidase mical3b OS=Danio rerio
            GN=mical3b PE=2 SV=2
          Length = 1673

 Score = 29.6 bits (65), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 16/35 (45%), Positives = 21/35 (60%)

Query: 30   DGDSIQEVSAPLSPVPIIDLSLLSSSTLCAKQEEE 64
            +GDS  E     S  P ID+S LS S LC ++E+E
Sbjct: 1024 EGDSSDESYEGCSDDPDIDVSSLSESKLCDQREQE 1058


>sp|Q9HBH1|DEFM_HUMAN Peptide deformylase, mitochondrial OS=Homo sapiens GN=PDF PE=1
          SV=1
          Length = 243

 Score = 28.9 bits (63), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 13/33 (39%), Positives = 23/33 (69%), Gaps = 1/33 (3%)

Query: 10 KRVQELVLNGEEPPASYICRDGDSI-QEVSAPL 41
          + ++ LVL   EPP S++C+ GD + + V+AP+
Sbjct: 50 RHLRRLVLGPPEPPFSHVCQVGDPVLRGVAAPV 82


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.133    0.380 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,475,823
Number of Sequences: 539616
Number of extensions: 1142174
Number of successful extensions: 2172
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2170
Number of HSP's gapped (non-prelim): 4
length of query: 87
length of database: 191,569,459
effective HSP length: 57
effective length of query: 30
effective length of database: 160,811,347
effective search space: 4824340410
effective search space used: 4824340410
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)