Query 034671
Match_columns 87
No_of_seqs 121 out of 888
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 05:17:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034671.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034671hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02947 oxidoreductase 99.1 2.7E-10 5.8E-15 87.0 6.0 64 10-77 26-96 (374)
2 PLN02758 oxidoreductase, 2OG-F 99.1 3.2E-10 6.9E-15 86.0 6.3 67 10-77 15-85 (361)
3 PLN02393 leucoanthocyanidin di 99.1 3.5E-10 7.5E-15 85.8 6.2 70 6-76 8-83 (362)
4 PLN02904 oxidoreductase 99.0 4.5E-10 9.8E-15 85.2 5.9 65 10-77 14-82 (357)
5 PLN02216 protein SRG1 98.9 4E-09 8.7E-14 79.9 6.9 65 10-77 15-83 (357)
6 PLN03178 leucoanthocyanidin di 98.9 2.3E-09 5E-14 81.2 5.4 67 10-77 6-80 (360)
7 PLN02912 oxidoreductase, 2OG-F 98.9 3.2E-09 6.9E-14 80.2 5.8 64 10-77 6-71 (348)
8 PLN03176 flavanone-3-hydroxyla 98.9 4.6E-09 1E-13 69.1 5.2 62 12-76 6-68 (120)
9 PLN02515 naringenin,2-oxogluta 98.7 2.5E-08 5.3E-13 75.8 5.0 58 18-77 11-69 (358)
10 PLN00417 oxidoreductase, 2OG-F 98.6 9.6E-08 2.1E-12 72.2 6.6 66 10-77 7-76 (348)
11 PLN02639 oxidoreductase, 2OG-F 98.6 7.7E-08 1.7E-12 72.3 5.4 57 14-77 4-64 (337)
12 PLN02704 flavonol synthase 98.6 1E-07 2.2E-12 71.6 5.7 60 11-77 5-69 (335)
13 PLN02276 gibberellin 20-oxidas 98.5 9.9E-08 2.2E-12 72.4 4.6 56 19-77 17-73 (361)
14 PLN02750 oxidoreductase, 2OG-F 98.4 3.3E-07 7.1E-12 69.1 5.1 54 20-77 2-56 (345)
15 PLN02254 gibberellin 3-beta-di 98.2 1.7E-06 3.6E-11 65.9 4.5 50 18-77 26-80 (358)
16 KOG0143 Iron/ascorbate family 97.7 3.8E-05 8.3E-10 57.8 4.3 34 42-77 16-49 (322)
17 PF14226 DIOX_N: non-haem diox 97.6 3.3E-05 7.2E-10 48.9 2.1 29 44-77 1-29 (116)
18 PTZ00273 oxidase reductase; Pr 97.5 0.0001 2.2E-09 54.9 3.2 35 42-77 4-38 (320)
19 PLN02299 1-aminocyclopropane-1 97.4 0.0002 4.3E-09 53.8 4.0 32 42-77 5-36 (321)
20 PLN02403 aminocyclopropanecarb 97.4 0.00018 3.9E-09 53.7 3.7 31 43-77 2-32 (303)
21 PLN02485 oxidoreductase 97.3 0.00024 5.2E-09 53.1 3.3 35 42-77 6-47 (329)
22 PLN02997 flavonol synthase 97.0 0.001 2.3E-08 50.0 4.0 29 42-77 31-59 (325)
23 COG3491 PcbC Isopenicillin N s 96.6 0.002 4.4E-08 48.9 2.9 33 43-76 5-37 (322)
24 PLN02365 2-oxoglutarate-depend 96.3 0.0038 8.2E-08 46.3 3.1 26 43-77 5-30 (300)
25 PLN02156 gibberellin 2-beta-di 95.9 0.012 2.5E-07 44.6 4.2 25 43-77 26-50 (335)
26 PLN03002 oxidoreductase, 2OG-F 95.8 0.0099 2.1E-07 44.7 3.4 29 42-77 13-41 (332)
27 PLN02984 oxidoreductase, 2OG-F 94.4 0.029 6.2E-07 42.6 2.3 24 42-76 37-60 (341)
28 PF11903 DUF3423: Protein of u 64.2 3.6 7.7E-05 24.9 0.9 20 62-81 29-48 (72)
29 PRK10208 acid-resistance prote 60.4 6.3 0.00014 26.0 1.6 25 44-77 75-99 (114)
30 PF06411 HdeA: HdeA/HdeB famil 58.0 4.1 8.9E-05 25.2 0.4 26 44-78 64-89 (94)
31 cd05141 Barstar_evA4336-like B 44.6 42 0.0009 20.1 3.4 31 46-84 2-32 (81)
32 PF01361 Tautomerase: Tautomer 40.9 12 0.00026 20.7 0.5 35 45-80 1-35 (60)
33 PF14581 SseB_C: SseB protein 39.1 41 0.00088 20.8 2.8 26 44-76 52-77 (108)
34 cd08871 START_STARD10-like Lip 38.3 27 0.00058 24.4 2.1 25 62-86 190-219 (222)
35 TIGR00013 taut 4-oxalocrotonat 38.2 44 0.00096 18.4 2.6 36 45-81 1-37 (63)
36 PF14757 NSP2-B_epitope: Immun 37.0 17 0.00037 26.9 0.9 41 45-85 221-262 (272)
37 PRK01964 4-oxalocrotonate taut 36.2 37 0.00079 19.0 2.1 37 45-82 2-38 (64)
38 PRK02220 4-oxalocrotonate taut 35.8 40 0.00086 18.5 2.2 34 45-79 2-35 (61)
39 cd00489 Barstar_like Barstar i 34.5 77 0.0017 19.3 3.5 31 46-84 2-32 (85)
40 PF15421 Polysacc_deac_3: Puta 32.2 13 0.00029 29.5 -0.3 16 72-87 17-32 (425)
41 cd00491 4Oxalocrotonate_Tautom 31.3 66 0.0014 17.2 2.6 34 45-79 1-34 (58)
42 PF05184 SapB_1: Saposin-like 29.2 70 0.0015 15.9 2.3 16 61-76 24-39 (39)
43 PF09220 LA-virus_coat: L-A vi 28.5 57 0.0012 26.1 2.6 30 39-76 193-222 (436)
44 PRK02289 4-oxalocrotonate taut 27.8 68 0.0015 17.8 2.3 34 45-79 2-35 (60)
45 COG2450 Uncharacterized conser 27.6 1.1E+02 0.0024 20.5 3.5 33 43-77 65-97 (124)
46 PF01133 ER: Enhancer of rudim 26.7 9.8 0.00021 24.6 -1.6 9 77-85 79-87 (102)
47 KOG0325 Lipoyltransferase [Ene 26.6 56 0.0012 24.0 2.1 29 43-76 97-125 (226)
48 TIGR02697 WPE_wolbac Wolbachia 24.4 28 0.0006 18.4 0.2 6 80-85 23-28 (36)
49 PF02505 MCR_D: Methyl-coenzym 22.8 74 0.0016 22.0 2.0 20 62-81 85-104 (153)
50 cd00523 archeal_HJR Holliday j 22.4 60 0.0013 21.3 1.5 26 62-87 64-95 (123)
51 COG4110 Uncharacterized protei 21.9 48 0.001 23.5 1.0 19 62-80 65-83 (200)
52 PF14483 Cut8_M: Cut8 dimerisa 20.9 1.3E+02 0.0028 15.8 2.4 17 61-77 12-28 (38)
53 KOG1766 Enhancer of rudimentar 20.5 29 0.00062 22.4 -0.3 13 73-85 75-87 (104)
54 cd02135 Arsenite_oxidase Nitro 20.4 1.1E+02 0.0025 19.4 2.6 26 62-87 20-45 (160)
55 TIGR03260 met_CoM_red_D methyl 20.3 86 0.0019 21.6 1.9 20 62-81 83-102 (150)
56 PF14197 Cep57_CLD_2: Centroso 20.0 1E+02 0.0022 18.2 2.1 15 61-75 35-49 (69)
No 1
>PLN02947 oxidoreductase
Probab=99.07 E-value=2.7e-10 Score=86.97 Aligned_cols=64 Identities=25% Similarity=0.211 Sum_probs=50.6
Q ss_pred ccHHHHHh-CCCCCCCCCcCCCCCCC-ccc---C--CCCCCCceeeCCCCCCCchhhhHHHHHHHHHHHHhhCCC
Q 034671 10 KRVQELVL-NGEEPPASYICRDGDSI-QEV---S--APLSPVPIIDLSLLSSSTLCAKQEEELHKLRSLTSVTPS 77 (87)
Q Consensus 10 ~~vq~Lv~-~~~~VP~~Yv~p~~~rp-~~~---~--~~~~~IPVIDLs~L~~~~~~~~r~~~v~~I~~AC~e~~~ 77 (87)
.+||.|+. +.++||++||+|+++|| ... . ....+||||||+.|.+.+ |..++++|++||++|.-
T Consensus 26 ~~v~~l~~~~~~~vp~~yv~p~~~~~~~~~~~~~~~~~~~~iPvIDls~l~~~~----~~~~~~~l~~Ac~~~GF 96 (374)
T PLN02947 26 KGVKHLCDSGITKVPAKYILPASDRPGLTRDEAIAASGNLKLPVIDLAELRGSN----RPHVLATLAAACREYGF 96 (374)
T ss_pred cCHHHHHhcCCCcCCHHhcCCchhccccccccccccCCCCCCCeEECcccCCcc----HHHHHHHHHHHHHHCcE
Confidence 67999997 88999999999999987 211 0 123469999999886422 67899999999999873
No 2
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=99.06 E-value=3.2e-10 Score=86.00 Aligned_cols=67 Identities=22% Similarity=0.161 Sum_probs=51.3
Q ss_pred ccHHHHHh-CCCCCCCCCcCCCCCCC-cc--cCCCCCCCceeeCCCCCCCchhhhHHHHHHHHHHHHhhCCC
Q 034671 10 KRVQELVL-NGEEPPASYICRDGDSI-QE--VSAPLSPVPIIDLSLLSSSTLCAKQEEELHKLRSLTSVTPS 77 (87)
Q Consensus 10 ~~vq~Lv~-~~~~VP~~Yv~p~~~rp-~~--~~~~~~~IPVIDLs~L~~~~~~~~r~~~v~~I~~AC~e~~~ 77 (87)
..||.|++ +.++||++||+|++++| .. ......+||||||+.+.+++.. .+++++++|++||++|.-
T Consensus 15 ~~~~~l~~~~~~~vp~~~v~~~~~~p~~~~~~~~~~~~IPvIDl~~l~~~~~~-~~~~~~~~l~~Ac~~~GF 85 (361)
T PLN02758 15 DDVQELRKSKPTTVPERFIRDMDERPDLASDTLHAPDDIPVIDFSRLVKGDND-ELFSEILKLRLACEEWGF 85 (361)
T ss_pred ccHHHHHhcCCCCCCHHHcCCchhccccccccccCCCCCCeEEchhhcCCChH-HHHHHHHHHHHHHHhCeE
Confidence 55899996 88999999999999987 22 1112346999999998665432 256789999999999863
No 3
>PLN02393 leucoanthocyanidin dioxygenase like protein
Probab=99.06 E-value=3.5e-10 Score=85.77 Aligned_cols=70 Identities=20% Similarity=0.146 Sum_probs=55.4
Q ss_pred CCCc-ccHHHHHh-CCCCCCCCCcCCCCCCC-cc--c-CCCCCCCceeeCCCCCCCchhhhHHHHHHHHHHHHhhCC
Q 034671 6 IFLS-KRVQELVL-NGEEPPASYICRDGDSI-QE--V-SAPLSPVPIIDLSLLSSSTLCAKQEEELHKLRSLTSVTP 76 (87)
Q Consensus 6 ~~~~-~~vq~Lv~-~~~~VP~~Yv~p~~~rp-~~--~-~~~~~~IPVIDLs~L~~~~~~~~r~~~v~~I~~AC~e~~ 76 (87)
|.++ +.|+.|+. +..+||++||+|+++++ .. . ......||||||+.+.+++.. .|.+++++|++||++|.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~iPvIDls~l~~~~~~-~r~~~~~~l~~Ac~~~G 83 (362)
T PLN02393 8 WPEPIVRVQSLSESGLPTIPDRYVKPPSQRPNSSNTTSAPAEINIPVIDLSSLFSDDAR-LRDATLRAISEACREWG 83 (362)
T ss_pred CCCccchHHHHHhcCCCcCCHHHcCCchhccccccccccCcCCCCCeEECccccCCChH-HHHHHHHHHHHHHHHCc
Confidence 6677 78999986 88999999999999887 31 1 122347999999998765543 27889999999999986
No 4
>PLN02904 oxidoreductase
Probab=99.03 E-value=4.5e-10 Score=85.16 Aligned_cols=65 Identities=17% Similarity=0.197 Sum_probs=51.6
Q ss_pred ccHHHHHh-CCCCCCCCCcCCCCCCC-cc--cCCCCCCCceeeCCCCCCCchhhhHHHHHHHHHHHHhhCCC
Q 034671 10 KRVQELVL-NGEEPPASYICRDGDSI-QE--VSAPLSPVPIIDLSLLSSSTLCAKQEEELHKLRSLTSVTPS 77 (87)
Q Consensus 10 ~~vq~Lv~-~~~~VP~~Yv~p~~~rp-~~--~~~~~~~IPVIDLs~L~~~~~~~~r~~~v~~I~~AC~e~~~ 77 (87)
.+|++|+. +..+||++||+|++++| .. .......||||||+.+.+++ . |++++++|++||++|.-
T Consensus 14 ~~~~~l~~~~~~~vp~~~~~~~~~~p~~~~~~~~~~~~iPvIDls~~~~~~-~--r~~~~~~l~~Ac~~~GF 82 (357)
T PLN02904 14 TSAMTLTNSGVPHVPDRYVLPPSQRPMLGSSIGTSTITLPVIDLSLLHDPL-L--RSCVIHEIEMACKGFGF 82 (357)
T ss_pred cchHHHHhcCCCCCCHHhCCCchhcccccccccccCCCCCEEECcccCCch-h--HHHHHHHHHHHHHHCce
Confidence 78999997 88999999999999988 31 11122469999999876433 2 77899999999999874
No 5
>PLN02216 protein SRG1
Probab=98.91 E-value=4e-09 Score=79.94 Aligned_cols=65 Identities=34% Similarity=0.331 Sum_probs=49.8
Q ss_pred ccHHHHHh--CCCCCCCCCcCCCCCCC-ccc-CCCCCCCceeeCCCCCCCchhhhHHHHHHHHHHHHhhCCC
Q 034671 10 KRVQELVL--NGEEPPASYICRDGDSI-QEV-SAPLSPVPIIDLSLLSSSTLCAKQEEELHKLRSLTSVTPS 77 (87)
Q Consensus 10 ~~vq~Lv~--~~~~VP~~Yv~p~~~rp-~~~-~~~~~~IPVIDLs~L~~~~~~~~r~~~v~~I~~AC~e~~~ 77 (87)
+.|+.|+. ++++||++||+|++++| ... ......||||||+.+.+++. +.+++++|++||++|.-
T Consensus 15 ~~~~~~~~~~~~~~~p~~~v~p~~~~~~~~~~~~~~~~iPvIDls~~~~~~~---~~~~~~~l~~Ac~~~GF 83 (357)
T PLN02216 15 PSVQEMVKEKMITTVPPRYVRSDQDKTEIAVDSGLSSEIPIIDMKRLCSSTA---MDSEVEKLDFACKEWGF 83 (357)
T ss_pred hhHHHHHhcCCCCCCCHhhCcCcccCCccccccCcCCCCCeEEChhccCCcc---HHHHHHHHHHHHHHCcE
Confidence 56899985 68899999999999887 211 11113699999999865553 46789999999999863
No 6
>PLN03178 leucoanthocyanidin dioxygenase; Provisional
Probab=98.90 E-value=2.3e-09 Score=81.19 Aligned_cols=67 Identities=24% Similarity=0.237 Sum_probs=51.6
Q ss_pred ccHHHHHh-CCCCCCCCCcCCCCCCC-cc-cC-----CCCCCCceeeCCCCCCCchhhhHHHHHHHHHHHHhhCCC
Q 034671 10 KRVQELVL-NGEEPPASYICRDGDSI-QE-VS-----APLSPVPIIDLSLLSSSTLCAKQEEELHKLRSLTSVTPS 77 (87)
Q Consensus 10 ~~vq~Lv~-~~~~VP~~Yv~p~~~rp-~~-~~-----~~~~~IPVIDLs~L~~~~~~~~r~~~v~~I~~AC~e~~~ 77 (87)
..|+.|++ +..+||++|++|.++++ .. .. .....||||||+.+.+++.. .|.+++++|++||+++.-
T Consensus 6 ~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~iPvIDls~~~~~~~~-~~~~~~~~l~~Ac~~~GF 80 (360)
T PLN03178 6 PRVEALASSGVSSIPKEYIRPPEERPSIGDVFEEEKKAAGPQVPVVDLSNIESDDEV-VREACVEAVRAAAAEWGV 80 (360)
T ss_pred hhHHHHHhcCCCCCCHHHcCCchhcccccccccccccccCCCCCEEEchhhcCCChh-hHHHHHHHHHHHHHHCCE
Confidence 45889986 78999999999998887 21 11 12236999999998765542 278899999999999874
No 7
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=98.89 E-value=3.2e-09 Score=80.23 Aligned_cols=64 Identities=16% Similarity=0.198 Sum_probs=49.4
Q ss_pred ccHHHHHhCCCCCCCCCcCCCCCCC-cccC-CCCCCCceeeCCCCCCCchhhhHHHHHHHHHHHHhhCCC
Q 034671 10 KRVQELVLNGEEPPASYICRDGDSI-QEVS-APLSPVPIIDLSLLSSSTLCAKQEEELHKLRSLTSVTPS 77 (87)
Q Consensus 10 ~~vq~Lv~~~~~VP~~Yv~p~~~rp-~~~~-~~~~~IPVIDLs~L~~~~~~~~r~~~v~~I~~AC~e~~~ 77 (87)
--||+|.+++..||++|++|+++++ .... .....||||||+.+.+++ +++++++|++||++|.-
T Consensus 6 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iPvIDls~~~~~~----~~~~~~~l~~A~~~~GF 71 (348)
T PLN02912 6 LLVSDIASVVDHVPSNYVRPVSDRPNMSEVETSGDSIPLIDLRDLHGPN----RADIINQFAHACSSYGF 71 (348)
T ss_pred hHHHHHhcCCCCCCHHhcCCchhccccccccccCCCCCeEECcccCCcC----HHHHHHHHHHHHHHCCE
Confidence 3478888789999999999998887 2211 122469999999886543 67889999999999874
No 8
>PLN03176 flavanone-3-hydroxylase; Provisional
Probab=98.86 E-value=4.6e-09 Score=69.07 Aligned_cols=62 Identities=11% Similarity=0.108 Sum_probs=45.3
Q ss_pred HHHHHhCCCCCCCCCcCCCCCCC-cccCCCCCCCceeeCCCCCCCchhhhHHHHHHHHHHHHhhCC
Q 034671 12 VQELVLNGEEPPASYICRDGDSI-QEVSAPLSPVPIIDLSLLSSSTLCAKQEEELHKLRSLTSVTP 76 (87)
Q Consensus 12 vq~Lv~~~~~VP~~Yv~p~~~rp-~~~~~~~~~IPVIDLs~L~~~~~~~~r~~~v~~I~~AC~e~~ 76 (87)
++.|.. ..++|+.|+++..++| .........||||||+.+.+++.. |.+++++|++||++|.
T Consensus 6 ~~~l~~-~~~~p~~~~~~~~~~p~~~~~~~~~~iPvIDls~~~~~~~~--~~~~~~~L~~A~~~~G 68 (120)
T PLN03176 6 LTALAE-EKTLQASFVRDEDERPKVAYNQFSNEIPVISIAGIDDGGEK--RAEICNKIVEACEEWG 68 (120)
T ss_pred HHHHhc-cCCCCHhhcCChhhCcCccccccCCCCCeEECccccCCchH--HHHHHHHHHHHHHHCC
Confidence 344432 4689999999998888 321111236999999998765543 6788999999999987
No 9
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase
Probab=98.69 E-value=2.5e-08 Score=75.79 Aligned_cols=58 Identities=10% Similarity=0.051 Sum_probs=43.7
Q ss_pred CCCCCCCCCcCCCCCCC-cccCCCCCCCceeeCCCCCCCchhhhHHHHHHHHHHHHhhCCC
Q 034671 18 NGEEPPASYICRDGDSI-QEVSAPLSPVPIIDLSLLSSSTLCAKQEEELHKLRSLTSVTPS 77 (87)
Q Consensus 18 ~~~~VP~~Yv~p~~~rp-~~~~~~~~~IPVIDLs~L~~~~~~~~r~~~v~~I~~AC~e~~~ 77 (87)
+..+||++|++++.++| .........||||||+.+.+++.. |.+++++|++||+++.-
T Consensus 11 ~~~~~p~~~~~~~~~~~~~~~~~~~~~iPvIDls~~~~~~~~--~~~~~~~l~~Ac~~~GF 69 (358)
T PLN02515 11 GESTLQSSFVRDEDERPKVAYNQFSDEIPVISLAGIDEVGGR--RGEICRKIVEACEDWGI 69 (358)
T ss_pred CCCcCCHHhcCCchhccCccccccCCCCCEEEChhccCCchH--HHHHHHHHHHHHHHCcE
Confidence 46799999999998887 321112236999999988654433 77899999999999874
No 10
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=98.63 E-value=9.6e-08 Score=72.23 Aligned_cols=66 Identities=39% Similarity=0.393 Sum_probs=47.1
Q ss_pred ccHHHHHhCCCCCCCCCcCCCCCCC----cccCCCCCCCceeeCCCCCCCchhhhHHHHHHHHHHHHhhCCC
Q 034671 10 KRVQELVLNGEEPPASYICRDGDSI----QEVSAPLSPVPIIDLSLLSSSTLCAKQEEELHKLRSLTSVTPS 77 (87)
Q Consensus 10 ~~vq~Lv~~~~~VP~~Yv~p~~~rp----~~~~~~~~~IPVIDLs~L~~~~~~~~r~~~v~~I~~AC~e~~~ 77 (87)
+.||+++.....||++|++|+.+++ .........||||||+.+.+++.. +.+++++|++||+++.-
T Consensus 7 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~IPvIDls~~~~~~~~--~~~~~~~l~~A~~~~GF 76 (348)
T PLN00417 7 KTVQEVVAAGEGLPERYLHTPTGDGEGQPLNGAVPEMDIPAIDLSLLLSSSDD--GREELSKLHSALSTWGV 76 (348)
T ss_pred hhHHHHHhCCCCCCccccCCcccccccccccccccCCCCCeEEChhhcCCCch--HHHHHHHHHHHHHHCCE
Confidence 4588888533589999999998753 111122347999999987665543 44567999999999863
No 11
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=98.60 E-value=7.7e-08 Score=72.30 Aligned_cols=57 Identities=16% Similarity=0.202 Sum_probs=43.0
Q ss_pred HHHh-CC--CCCCCCCcCCCCCCC-cccCCCCCCCceeeCCCCCCCchhhhHHHHHHHHHHHHhhCCC
Q 034671 14 ELVL-NG--EEPPASYICRDGDSI-QEVSAPLSPVPIIDLSLLSSSTLCAKQEEELHKLRSLTSVTPS 77 (87)
Q Consensus 14 ~Lv~-~~--~~VP~~Yv~p~~~rp-~~~~~~~~~IPVIDLs~L~~~~~~~~r~~~v~~I~~AC~e~~~ 77 (87)
.|++ |+ .+||++||++++++| .........||||||+.. + |.+++++|++||++|.-
T Consensus 4 ~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~iPvIDls~~---~----~~~~~~~l~~Ac~~~GF 64 (337)
T PLN02639 4 KLLSTGIRHTTLPESYVRPESERPRLSEVSTCENVPVIDLGSP---D----RAQVVQQIGDACRRYGF 64 (337)
T ss_pred hhhhhcCCcCcCCHHhcCCchhcccccccccCCCCCeEECCCc---c----HHHHHHHHHHHHHhCCE
Confidence 4664 55 899999999998887 321122346999999853 2 67899999999999863
No 12
>PLN02704 flavonol synthase
Probab=98.59 E-value=1e-07 Score=71.61 Aligned_cols=60 Identities=22% Similarity=0.200 Sum_probs=45.4
Q ss_pred cHHHHHh-C--CCCCCCCCcCCCCCCC-ccc-CCCCCCCceeeCCCCCCCchhhhHHHHHHHHHHHHhhCCC
Q 034671 11 RVQELVL-N--GEEPPASYICRDGDSI-QEV-SAPLSPVPIIDLSLLSSSTLCAKQEEELHKLRSLTSVTPS 77 (87)
Q Consensus 11 ~vq~Lv~-~--~~~VP~~Yv~p~~~rp-~~~-~~~~~~IPVIDLs~L~~~~~~~~r~~~v~~I~~AC~e~~~ 77 (87)
+++.+++ + ..+||++|++++.++| ... ......||||||+.. + +.+++++|++||+++.-
T Consensus 5 ~~~~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~iPvIDls~~---~----~~~~~~~l~~Ac~~~GF 69 (335)
T PLN02704 5 RVQAIASSSLLKETIPEEFIRSEKEQPAITTFHGVDPQVPTIDLSDP---D----EEKLTRLIAEASKEWGM 69 (335)
T ss_pred hHHHHHhCCCCcCCCCHHHcCCcccccccccccccCCCCCeEECCCc---c----HHHHHHHHHHHHHHcCE
Confidence 4777775 4 7899999999999888 321 112346999999863 2 46789999999999874
No 13
>PLN02276 gibberellin 20-oxidase
Probab=98.54 E-value=9.9e-08 Score=72.41 Aligned_cols=56 Identities=25% Similarity=0.269 Sum_probs=43.1
Q ss_pred CCCCCCCCcCCCCCCC-cccCCCCCCCceeeCCCCCCCchhhhHHHHHHHHHHHHhhCCC
Q 034671 19 GEEPPASYICRDGDSI-QEVSAPLSPVPIIDLSLLSSSTLCAKQEEELHKLRSLTSVTPS 77 (87)
Q Consensus 19 ~~~VP~~Yv~p~~~rp-~~~~~~~~~IPVIDLs~L~~~~~~~~r~~~v~~I~~AC~e~~~ 77 (87)
..+||+.|++|.+++| ... ....||||||+.+.+++.. .|.+++++|++||+++.-
T Consensus 17 ~~~vp~~~~~~~~~~p~~~~--~~~~iPvIDls~~~~~~~~-~~~~~~~~l~~Ac~~~GF 73 (361)
T PLN02276 17 QSNIPAQFIWPDEEKPSAAV--PELAVPLIDLGGFLSGDEA-ATAEAARLVREACLKHGF 73 (361)
T ss_pred CCCCCHHhcCCccccCCCCC--cCCCCCeEEChhhcCCChH-HHHHHHHHHHHHHHHCcE
Confidence 3579999999998887 221 2246999999998665543 277899999999999863
No 14
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=98.44 E-value=3.3e-07 Score=69.10 Aligned_cols=54 Identities=19% Similarity=0.172 Sum_probs=40.2
Q ss_pred CCCCCCCcCCCCCCC-cccCCCCCCCceeeCCCCCCCchhhhHHHHHHHHHHHHhhCCC
Q 034671 20 EEPPASYICRDGDSI-QEVSAPLSPVPIIDLSLLSSSTLCAKQEEELHKLRSLTSVTPS 77 (87)
Q Consensus 20 ~~VP~~Yv~p~~~rp-~~~~~~~~~IPVIDLs~L~~~~~~~~r~~~v~~I~~AC~e~~~ 77 (87)
.++|.+|+++.+++| .........||||||+.+.+.+ |.+++++|++||+++.-
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~iPvIDls~~~~~~----~~~~~~~l~~Ac~~~GF 56 (345)
T PLN02750 2 GEIDPAFIQAPEHRPKFHLTNSDEEIPVIDLSVSTSHD----KTEVASKIGEACKKWGF 56 (345)
T ss_pred CCCCHHHcCCchhccCccccccCCCCCeEECCCCCccc----HHHHHHHHHHHHHhCCE
Confidence 478999999998888 3211112469999999853322 67889999999999863
No 15
>PLN02254 gibberellin 3-beta-dioxygenase
Probab=98.22 E-value=1.7e-06 Score=65.86 Aligned_cols=50 Identities=20% Similarity=0.201 Sum_probs=36.5
Q ss_pred CCCCCCCCCcCCCCCCC---ccc--CCCCCCCceeeCCCCCCCchhhhHHHHHHHHHHHHhhCCC
Q 034671 18 NGEEPPASYICRDGDSI---QEV--SAPLSPVPIIDLSLLSSSTLCAKQEEELHKLRSLTSVTPS 77 (87)
Q Consensus 18 ~~~~VP~~Yv~p~~~rp---~~~--~~~~~~IPVIDLs~L~~~~~~~~r~~~v~~I~~AC~e~~~ 77 (87)
...+||++||+|+++++ ... ......||||||+. ..++++|++||++|.-
T Consensus 26 ~~~~vp~~~v~p~~~~~~~~~~~~~~~~~~~iPvIDl~~----------~~~~~~l~~Ac~~~GF 80 (358)
T PLN02254 26 SLQTLPDSHVWTPKDDLLFSSAPSPSTTDESIPVIDLSD----------PNALTLIGHACETWGV 80 (358)
T ss_pred hhccCChhhcCChhhccCccccccccCcCCCCCeEeCCC----------HHHHHHHHHHHHHCCE
Confidence 34579999999999883 111 01224699999974 2368999999999863
No 16
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=97.75 E-value=3.8e-05 Score=57.79 Aligned_cols=34 Identities=35% Similarity=0.365 Sum_probs=27.6
Q ss_pred CCCceeeCCCCCCCchhhhHHHHHHHHHHHHhhCCC
Q 034671 42 SPVPIIDLSLLSSSTLCAKQEEELHKLRSLTSVTPS 77 (87)
Q Consensus 42 ~~IPVIDLs~L~~~~~~~~r~~~v~~I~~AC~e~~~ 77 (87)
..||||||+.+.+.+.. +..++++|++||++|.-
T Consensus 16 ~~iPvIDls~~~~~~~~--~~~~~~~i~~Ace~wGf 49 (322)
T KOG0143|consen 16 LDIPVIDLSCLDSDDPG--REEVVEKLREACEEWGF 49 (322)
T ss_pred CCcCeEECCCCCCcchh--HHHHHHHHHHHHHHCCe
Confidence 47999999987655432 78899999999999973
No 17
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=97.63 E-value=3.3e-05 Score=48.92 Aligned_cols=29 Identities=31% Similarity=0.366 Sum_probs=21.7
Q ss_pred CceeeCCCCCCCchhhhHHHHHHHHHHHHhhCCC
Q 034671 44 VPIIDLSLLSSSTLCAKQEEELHKLRSLTSVTPS 77 (87)
Q Consensus 44 IPVIDLs~L~~~~~~~~r~~~v~~I~~AC~e~~~ 77 (87)
||||||+. + .. .|.+++++|++||+++.-
T Consensus 1 iPvIDls~--~-~~--~~~~~~~~l~~A~~~~GF 29 (116)
T PF14226_consen 1 IPVIDLSP--D-PA--DREEVAEQLRDACEEWGF 29 (116)
T ss_dssp --EEEHGG--C-HH--HHHHHHHHHHHHHHHTSE
T ss_pred CCeEECCC--C-Cc--cHHHHHHHHHHHHHhCCE
Confidence 79999997 1 22 278899999999999863
No 18
>PTZ00273 oxidase reductase; Provisional
Probab=97.47 E-value=0.0001 Score=54.93 Aligned_cols=35 Identities=14% Similarity=0.171 Sum_probs=28.0
Q ss_pred CCCceeeCCCCCCCchhhhHHHHHHHHHHHHhhCCC
Q 034671 42 SPVPIIDLSLLSSSTLCAKQEEELHKLRSLTSVTPS 77 (87)
Q Consensus 42 ~~IPVIDLs~L~~~~~~~~r~~~v~~I~~AC~e~~~ 77 (87)
..||||||+.+.+++.. .|.+++++|++||+++.-
T Consensus 4 ~~iPvIDl~~~~~~~~~-~~~~~~~~l~~A~~~~Gf 38 (320)
T PTZ00273 4 ASLPVIDVSPLFGGESA-EKMRVAKQIDEACRTWGF 38 (320)
T ss_pred CCCCEEecHHhcCCChH-HHHHHHHHHHHHHHhCCE
Confidence 36999999998765543 267889999999999863
No 19
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase
Probab=97.40 E-value=0.0002 Score=53.78 Aligned_cols=32 Identities=13% Similarity=0.245 Sum_probs=25.8
Q ss_pred CCCceeeCCCCCCCchhhhHHHHHHHHHHHHhhCCC
Q 034671 42 SPVPIIDLSLLSSSTLCAKQEEELHKLRSLTSVTPS 77 (87)
Q Consensus 42 ~~IPVIDLs~L~~~~~~~~r~~~v~~I~~AC~e~~~ 77 (87)
.+||||||+.+.+.+ |.+++++|++||++|.-
T Consensus 5 ~~iPvIDls~~~~~~----~~~~~~~l~~A~~~~GF 36 (321)
T PLN02299 5 ESFPVIDMEKLNGEE----RAATMELIKDACENWGF 36 (321)
T ss_pred CCCCEEECcCCCccc----HHHHHHHHHHHHHhcCE
Confidence 369999999875332 67789999999999863
No 20
>PLN02403 aminocyclopropanecarboxylate oxidase
Probab=97.40 E-value=0.00018 Score=53.71 Aligned_cols=31 Identities=16% Similarity=0.241 Sum_probs=25.5
Q ss_pred CCceeeCCCCCCCchhhhHHHHHHHHHHHHhhCCC
Q 034671 43 PVPIIDLSLLSSSTLCAKQEEELHKLRSLTSVTPS 77 (87)
Q Consensus 43 ~IPVIDLs~L~~~~~~~~r~~~v~~I~~AC~e~~~ 77 (87)
+||||||+.+... + |++++++|++||++|.-
T Consensus 2 ~iPvIDls~~~~~--~--~~~~~~~l~~Ac~~~GF 32 (303)
T PLN02403 2 EIPVIDFDQLDGE--K--RSKTMSLLHQACEKWGF 32 (303)
T ss_pred CCCeEeCccCCcc--c--HHHHHHHHHHHHHhCce
Confidence 5999999987532 2 77899999999999873
No 21
>PLN02485 oxidoreductase
Probab=97.29 E-value=0.00024 Score=53.14 Aligned_cols=35 Identities=20% Similarity=0.217 Sum_probs=26.0
Q ss_pred CCCceeeCCCCCCC--c-----hhhhHHHHHHHHHHHHhhCCC
Q 034671 42 SPVPIIDLSLLSSS--T-----LCAKQEEELHKLRSLTSVTPS 77 (87)
Q Consensus 42 ~~IPVIDLs~L~~~--~-----~~~~r~~~v~~I~~AC~e~~~ 77 (87)
..||||||+.|.++ + .. .|.+++++|++||+++.-
T Consensus 6 ~~iPvIDl~~l~~~~~~~~~~~~~-~~~~~~~~l~~Ac~~~GF 47 (329)
T PLN02485 6 KSIPVIDISPLVAKCDDPDMAEDP-DVAEVVRQLDKACRDAGF 47 (329)
T ss_pred CCCCeEechhhhccCcccccccch-HHHHHHHHHHHHHHHCCE
Confidence 36999999987532 1 11 166789999999999863
No 22
>PLN02997 flavonol synthase
Probab=96.97 E-value=0.001 Score=50.01 Aligned_cols=29 Identities=17% Similarity=0.229 Sum_probs=23.9
Q ss_pred CCCceeeCCCCCCCchhhhHHHHHHHHHHHHhhCCC
Q 034671 42 SPVPIIDLSLLSSSTLCAKQEEELHKLRSLTSVTPS 77 (87)
Q Consensus 42 ~~IPVIDLs~L~~~~~~~~r~~~v~~I~~AC~e~~~ 77 (87)
..||||||+.+ + +.+++++|++||++|.-
T Consensus 31 ~~IPvIDls~~---~----~~~~~~~l~~Ac~~~GF 59 (325)
T PLN02997 31 VDVPVVDLSVS---D----EDFLVREVVKASEEWGV 59 (325)
T ss_pred CCCCeEECCCC---C----HHHHHHHHHHHHHHCCE
Confidence 46999999964 2 56789999999999873
No 23
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only]
Probab=96.55 E-value=0.002 Score=48.91 Aligned_cols=33 Identities=30% Similarity=0.337 Sum_probs=27.8
Q ss_pred CCceeeCCCCCCCchhhhHHHHHHHHHHHHhhCC
Q 034671 43 PVPIIDLSLLSSSTLCAKQEEELHKLRSLTSVTP 76 (87)
Q Consensus 43 ~IPVIDLs~L~~~~~~~~r~~~v~~I~~AC~e~~ 76 (87)
.||+|||+.+..++.. .|..++++|++||+++.
T Consensus 5 ~lp~idls~~~~~~~~-~~~~~~~~l~~A~r~~G 37 (322)
T COG3491 5 DLPIIDLSELAGSDPG-ARRRVAQELRAACREIG 37 (322)
T ss_pred cCceeccHHhcCCCcH-HHHHHHHHHHHHHHhCC
Confidence 6999999998766542 28999999999999986
No 24
>PLN02365 2-oxoglutarate-dependent dioxygenase
Probab=96.33 E-value=0.0038 Score=46.34 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=20.7
Q ss_pred CCceeeCCCCCCCchhhhHHHHHHHHHHHHhhCCC
Q 034671 43 PVPIIDLSLLSSSTLCAKQEEELHKLRSLTSVTPS 77 (87)
Q Consensus 43 ~IPVIDLs~L~~~~~~~~r~~~v~~I~~AC~e~~~ 77 (87)
.||||||+.+ .+.+++|++||++|.-
T Consensus 5 ~iPvIDls~~---------~~~~~~l~~Ac~~~Gf 30 (300)
T PLN02365 5 NIPTIDLEEF---------PGQIEKLREACERWGC 30 (300)
T ss_pred CCCEEEChhh---------HHHHHHHHHHHHHCCE
Confidence 5999999976 1235899999999863
No 25
>PLN02156 gibberellin 2-beta-dioxygenase
Probab=95.94 E-value=0.012 Score=44.63 Aligned_cols=25 Identities=16% Similarity=0.197 Sum_probs=19.5
Q ss_pred CCceeeCCCCCCCchhhhHHHHHHHHHHHHhhCCC
Q 034671 43 PVPIIDLSLLSSSTLCAKQEEELHKLRSLTSVTPS 77 (87)
Q Consensus 43 ~IPVIDLs~L~~~~~~~~r~~~v~~I~~AC~e~~~ 77 (87)
.||||||+. .++.++|++||++|.-
T Consensus 26 ~iPvIDls~----------~~~~~~l~~Ac~~~GF 50 (335)
T PLN02156 26 LIPVIDLTD----------SDAKTQIVKACEEFGF 50 (335)
T ss_pred CCCcccCCC----------hHHHHHHHHHHHHCCE
Confidence 599999983 1235789999999873
No 26
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=95.82 E-value=0.0099 Score=44.74 Aligned_cols=29 Identities=17% Similarity=0.066 Sum_probs=23.1
Q ss_pred CCCceeeCCCCCCCchhhhHHHHHHHHHHHHhhCCC
Q 034671 42 SPVPIIDLSLLSSSTLCAKQEEELHKLRSLTSVTPS 77 (87)
Q Consensus 42 ~~IPVIDLs~L~~~~~~~~r~~~v~~I~~AC~e~~~ 77 (87)
..||||||+.. + +.+++++|++||+++.-
T Consensus 13 ~~iP~IDl~~~---~----~~~~~~~l~~Ac~~~GF 41 (332)
T PLN03002 13 SSLNCIDLAND---D----LNHSVASLKQACLDCGF 41 (332)
T ss_pred CCCCEEeCCch---h----HHHHHHHHHHHHHhCCE
Confidence 36999999842 2 56789999999999863
No 27
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=94.44 E-value=0.029 Score=42.61 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=19.2
Q ss_pred CCCceeeCCCCCCCchhhhHHHHHHHHHHHHhhCC
Q 034671 42 SPVPIIDLSLLSSSTLCAKQEEELHKLRSLTSVTP 76 (87)
Q Consensus 42 ~~IPVIDLs~L~~~~~~~~r~~~v~~I~~AC~e~~ 76 (87)
..||||||+.+ .+++|++||+++.
T Consensus 37 ~~IPvIDls~~-----------~~~~l~~A~~~~G 60 (341)
T PLN02984 37 IDIPVIDMECL-----------DMEKLREACKDWG 60 (341)
T ss_pred CCCCeEeCcHH-----------HHHHHHHHHHhCc
Confidence 35999999853 2478999999986
No 28
>PF11903 DUF3423: Protein of unknown function (DUF3423); InterPro: IPR021831 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 73 to 118 amino acids in length.
Probab=64.24 E-value=3.6 Score=24.92 Aligned_cols=20 Identities=20% Similarity=0.376 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHhhCCCCCCC
Q 034671 62 EEELHKLRSLTSVTPSLPYN 81 (87)
Q Consensus 62 ~~~v~~I~~AC~e~~~~~~~ 81 (87)
-+--.+||++++++|.++|+
T Consensus 29 iE~WariGr~~E~np~l~~~ 48 (72)
T PF11903_consen 29 IEHWARIGRAAEDNPDLSYS 48 (72)
T ss_pred HHHHHHHHHHHHHCCCCCHH
Confidence 34567999999999999996
No 29
>PRK10208 acid-resistance protein; Provisional
Probab=60.41 E-value=6.3 Score=26.02 Aligned_cols=25 Identities=12% Similarity=0.098 Sum_probs=19.4
Q ss_pred CceeeCCCCCCCchhhhHHHHHHHHHHHHhhCCC
Q 034671 44 VPIIDLSLLSSSTLCAKQEEELHKLRSLTSVTPS 77 (87)
Q Consensus 44 IPVIDLs~L~~~~~~~~r~~~v~~I~~AC~e~~~ 77 (87)
-.+||+.++ +.++-+|.++|+++|-
T Consensus 75 D~vvDi~gi---------etvtP~vve~Ckk~Pk 99 (114)
T PRK10208 75 DAVIDVQGI---------ETVTPAIVQACTQDKK 99 (114)
T ss_pred CeeEecccc---------hhccHHHHHHHHHChH
Confidence 457898864 4457889999999985
No 30
>PF06411 HdeA: HdeA/HdeB family; InterPro: IPR010486 HNS (histone-like nucleoid structuring)-dependent expression A (HdeA) protein is a stress response protein found in highly acid resistant bacteria such as Shigella flexneri and Escherichia coli, but which is lacking in mildly acid tolerant bacteria such as Salmonella []. HdeA is one of the most abundant proteins found in the periplasmic space of E. coli, where it is one of a network of proteins that confer an acid resistance phenotype essential for the pathogenesis of enteric bacteria []. HdeA is thought to act as a chaperone, functioning to prevent the aggregation of periplasmic proteins denatured under acidic conditions. The HNS protein, a chromatin-associated protein that influences the gene expression of several environmentally-induced target genes, represses the expression of HdeA. HdeB, which is encoded within the same operon, may form heterodimers with HdeA. HdeA is a single domain protein with an overall fold that is similar to the fold of the N-terminal subdomain of the GluRS anticodon-binding domain. ; PDB: 1BG8_C 1DJ8_C 2XUV_C.
Probab=58.05 E-value=4.1 Score=25.24 Aligned_cols=26 Identities=15% Similarity=0.135 Sum_probs=18.6
Q ss_pred CceeeCCCCCCCchhhhHHHHHHHHHHHHhhCCCC
Q 034671 44 VPIIDLSLLSSSTLCAKQEEELHKLRSLTSVTPSL 78 (87)
Q Consensus 44 IPVIDLs~L~~~~~~~~r~~~v~~I~~AC~e~~~~ 78 (87)
-.+||+..+ +.+..+|.+.|+++|..
T Consensus 64 ~d~vD~~~~---------~~~tp~v~~~Ckk~P~~ 89 (94)
T PF06411_consen 64 GDYVDFDGI---------ETVTPKVVEYCKKNPKS 89 (94)
T ss_dssp GCBB-HHHH---------HHHHHHHHHHHHCTTTS
T ss_pred CCeeeHHHH---------HHhhHHHHHHHHHCccc
Confidence 445677642 55689999999999964
No 31
>cd05141 Barstar_evA4336-like Barstar_evA4336-like contains uncharacterized sequences similar to the uncharacterized, predicted RNAase inhibitor evA4336 found in Azoarcus sp. EvN1. This is a subfamily of the Barstar family of RNAase inhibitors. Barstar is an intracellular inhibitor of barnase, an extracellular ribonuclease of Bacillus amyloliquefaciens. Barstar binds tightly to the barnase active site and sterically blocks it thus inhibiting its potentially lethal RNase activity inside the cell. Barstar also binds and inhibits a ribonuclease called RNase Sa (produced by Streptomyces aureofaciens) which belongs to the same enzyme family as does barnase.
Probab=44.62 E-value=42 Score=20.08 Aligned_cols=31 Identities=26% Similarity=0.503 Sum_probs=21.7
Q ss_pred eeeCCCCCCCchhhhHHHHHHHHHHHHhhCCCCCCCCcc
Q 034671 46 IIDLSLLSSSTLCAKQEEELHKLRSLTSVTPSLPYNKEW 84 (87)
Q Consensus 46 VIDLs~L~~~~~~~~r~~~v~~I~~AC~e~~~~~~~~~~ 84 (87)
+||.+...+ +....+++++|. .+|.- |.+.|
T Consensus 2 ~idg~~i~~------~~~~~~~l~~~l-~fP~y-fG~Nl 32 (81)
T cd05141 2 VLDLSGIAD------KAALLDALAAAL-DFPSW-FGHNW 32 (81)
T ss_pred EEecccCCC------HHHHHHHHHHHc-CCCcc-ccCCH
Confidence 678877532 466788899888 77754 66555
No 32
>PF01361 Tautomerase: Tautomerase enzyme; InterPro: IPR004370 4-Oxalocrotonate tautomerase (4-OT) catalyzes the isomerisation of beta,gamma-unsaturated enones to their alpha,beta-isomers. The enzyme is part of a plasmid-encoded pathway, which enables bacteria harbouring the plasmid to use various aromatic hydrocarbons as their sole sources of carbon and energy. The enzyme is a barrel-shaped hexamer, which can be viewed as a trimer of dimers. The hexamer contains a hydrophobic core formed by three beta-sheets and surrounded by three pairs of alpha-helices. Each 4-OT monomer of 62 amino acids has a relatively simple beta-alpha-beta fold as described by the structure of the enzyme from Pseudomonas putida []. The monomer begins with a conserved proline at the start of a beta-strand, followed by an alpha-helix and a 310 helix preceding a second parallel beta-strand, and ends with a beta-hairpin near the C terminus. The dimer results from antiparallel interactions between the beta-sheets and alpha-helices of the two monomers, forming a four-stranded beta-sheet with antiparallel alpha-helices on one side, creating two active sites, one at each end of the beta-sheet. Three dimers further associate to form a hexamer by the interactions of the strands of the C-terminal beta-hairpin loops with the edges of the four-stranded beta-sheets of neighbouring dimers, creating a series of cross-links that stabilise the hexamer Pro-1 of the mature protein functions as the general base while Arg-39 and an ordered water molecule each provide a hydrogen bond to the C-2 oxygen of substrate. Arg-39 plays an additional role in the binding of the C-1 carboxylate group. Arg-11 participates both in substrate binding and in catalysis. It interacts with the C-6 carboxylate group, thereby holding the substrate in place and drawing electron density to the C-5 position. The hydrophobic nature of the active site, which lowers the pKa of Pro-1 and provides a favourable environment for catalysis, is largely maintained by Phe-50. Because several Arg residues located near the active site are not conserved among all members of this family and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.; GO: 0016853 isomerase activity, 0006725 cellular aromatic compound metabolic process; PDB: 4OTA_H 4OTC_G 4OTB_J 2FM7_A 1BJP_B 1S0Y_K 3EJ9_E 3EJ7_K 3EJ3_I 3MB2_A ....
Probab=40.91 E-value=12 Score=20.73 Aligned_cols=35 Identities=14% Similarity=0.212 Sum_probs=19.9
Q ss_pred ceeeCCCCCCCchhhhHHHHHHHHHHHHhhCCCCCC
Q 034671 45 PIIDLSLLSSSTLCAKQEEELHKLRSLTSVTPSLPY 80 (87)
Q Consensus 45 PVIDLs~L~~~~~~~~r~~~v~~I~~AC~e~~~~~~ 80 (87)
|+|.+.-....+.+ ++.+++++|.+|..+.=..|-
T Consensus 1 P~I~i~~~~g~~~e-~K~~l~~~it~~~~~~lg~~~ 35 (60)
T PF01361_consen 1 PFITIKIPEGRTAE-QKRELAEAITDAVVEVLGIPP 35 (60)
T ss_dssp -EEEEEEESTS-HH-HHHHHHHHHHHHHHHHHTS-G
T ss_pred CEEEEEECCCCCHH-HHHHHHHHHHHHHHHHhCcCC
Confidence 66666443222322 377788999998877544443
No 33
>PF14581 SseB_C: SseB protein C-terminal domain
Probab=39.10 E-value=41 Score=20.84 Aligned_cols=26 Identities=12% Similarity=0.036 Sum_probs=20.0
Q ss_pred CceeeCCCCCCCchhhhHHHHHHHHHHHHhhCC
Q 034671 44 VPIIDLSLLSSSTLCAKQEEELHKLRSLTSVTP 76 (87)
Q Consensus 44 IPVIDLs~L~~~~~~~~r~~~v~~I~~AC~e~~ 76 (87)
+=+||+.+ .+ ..+++++|+++|+++-
T Consensus 52 li~vd~~~---~~----~~~~~~~i~~~~~~~~ 77 (108)
T PF14581_consen 52 LIGVDFDG---ED----IEEIFQEIGRAARPYL 77 (108)
T ss_pred EEEEeccC---hh----HHHHHHHHHHHhhhcC
Confidence 44888875 22 5789999999999974
No 34
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=38.29 E-value=27 Score=24.36 Aligned_cols=25 Identities=28% Similarity=0.496 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhhCC-----CCCCCCcccc
Q 034671 62 EEELHKLRSLTSVTP-----SLPYNKEWLF 86 (87)
Q Consensus 62 ~~~v~~I~~AC~e~~-----~~~~~~~~~~ 86 (87)
...++.|++||++++ ..|-||-||.
T Consensus 190 ~~~l~~l~k~~~~y~~~~~~~~~~~~~~~~ 219 (222)
T cd08871 190 PKVMKKLHKAALKYPEWKAKNNPEFKPWLY 219 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Confidence 357889999999987 5788999985
No 35
>TIGR00013 taut 4-oxalocrotonate tautomerase family enzyme. 4-oxalocrotonate tautomerase is a homohexamer in which each monomer is very small, at about 62 amino acids. Pro-1 of the mature protein serves as a general base. The enzyme functions in meta-cleavage pathways of aromatic hydrocarbon catabolism. Because several Arg residues located near the active site in the crystal structure of Pseudomonas putida are not conserved among all members of this family, because the literature describes a general role in the isomerization of beta,gamma-unsaturated enones to their alpha,beta-isomers, and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.
Probab=38.21 E-value=44 Score=18.37 Aligned_cols=36 Identities=11% Similarity=0.192 Sum_probs=22.8
Q ss_pred ceeeCCCC-CCCchhhhHHHHHHHHHHHHhhCCCCCCC
Q 034671 45 PIIDLSLL-SSSTLCAKQEEELHKLRSLTSVTPSLPYN 81 (87)
Q Consensus 45 PVIDLs~L-~~~~~~~~r~~~v~~I~~AC~e~~~~~~~ 81 (87)
|+|.+.-+ ..-+.+ ++.+++++|.++..+.=..|-+
T Consensus 1 P~i~i~i~~~grt~e-qK~~l~~~it~~l~~~lg~~~~ 37 (63)
T TIGR00013 1 PFVNIYILKEGRTDE-QKRQLIEGVTEAMAETLGANLE 37 (63)
T ss_pred CEEEEEECCCCCCHH-HHHHHHHHHHHHHHHHhCCCcc
Confidence 66776554 222222 3777888998888877666644
No 36
>PF14757 NSP2-B_epitope: Immunogenic region of nsp2 protein of arterivirus polyprotein
Probab=37.05 E-value=17 Score=26.94 Aligned_cols=41 Identities=32% Similarity=0.390 Sum_probs=27.4
Q ss_pred ceeeCCCCCCCchhhhHHHHHHHHHHHHhhCC-CCCCCCccc
Q 034671 45 PIIDLSLLSSSTLCAKQEEELHKLRSLTSVTP-SLPYNKEWL 85 (87)
Q Consensus 45 PVIDLs~L~~~~~~~~r~~~v~~I~~AC~e~~-~~~~~~~~~ 85 (87)
=|||-++-.++..+..++..+.-+++||.-.- ..|-.+|||
T Consensus 221 AiIdsGGPcsghlq~~Ke~cl~imreACda~kl~dPATqeWL 262 (272)
T PF14757_consen 221 AIIDSGGPCSGHLQEEKEACLSIMREACDATKLDDPATQEWL 262 (272)
T ss_pred hhhccCCCchHHHHHHHHHHHHHHHHhcCccccCChhHHHHH
Confidence 37998876665543224456778899997654 356778887
No 37
>PRK01964 4-oxalocrotonate tautomerase; Provisional
Probab=36.23 E-value=37 Score=19.01 Aligned_cols=37 Identities=22% Similarity=0.365 Sum_probs=23.0
Q ss_pred ceeeCCCCCCCchhhhHHHHHHHHHHHHhhCCCCCCCC
Q 034671 45 PIIDLSLLSSSTLCAKQEEELHKLRSLTSVTPSLPYNK 82 (87)
Q Consensus 45 PVIDLs~L~~~~~~~~r~~~v~~I~~AC~e~~~~~~~~ 82 (87)
|+|.+.....-+.+ ++.++++.|.+|..+.-..|-+.
T Consensus 2 P~v~i~l~~grt~e-qk~~l~~~it~~l~~~lg~p~~~ 38 (64)
T PRK01964 2 PIVQIQLLEGRPEE-KIKNLIREVTEAISATLDVPKER 38 (64)
T ss_pred CEEEEEEeCCCCHH-HHHHHHHHHHHHHHHHhCcChhh
Confidence 66666432222222 37889999999988876666443
No 38
>PRK02220 4-oxalocrotonate tautomerase; Provisional
Probab=35.81 E-value=40 Score=18.48 Aligned_cols=34 Identities=15% Similarity=0.274 Sum_probs=21.4
Q ss_pred ceeeCCCCCCCchhhhHHHHHHHHHHHHhhCCCCC
Q 034671 45 PIIDLSLLSSSTLCAKQEEELHKLRSLTSVTPSLP 79 (87)
Q Consensus 45 PVIDLs~L~~~~~~~~r~~~v~~I~~AC~e~~~~~ 79 (87)
|+|.+.-+.+-+.. ++.++++.|.++..+.-..|
T Consensus 2 P~i~i~~~~Grs~e-qk~~l~~~it~~l~~~~~~p 35 (61)
T PRK02220 2 PYVHIKLIEGRTEE-QLKALVKDVTAAVSKNTGAP 35 (61)
T ss_pred CEEEEEEcCCCCHH-HHHHHHHHHHHHHHHHhCcC
Confidence 66666433222222 37788999999888776655
No 39
>cd00489 Barstar_like Barstar is an intracellular inhibitor of barnase, an extracellular ribonuclease of Bacillus amyloliquefaciens. Barstar binds tightly to the barnase active site and sterically blocks it, thus inhibiting its potentially lethal RNase activity inside the cell. Barstar also binds and inhibits a ribonuclease called RNase Sa (produced by Streptomyces aureofaciens) which belongs to the same enzyme family as does barnase.
Probab=34.49 E-value=77 Score=19.26 Aligned_cols=31 Identities=19% Similarity=0.246 Sum_probs=21.5
Q ss_pred eeeCCCCCCCchhhhHHHHHHHHHHHHhhCCCCCCCCcc
Q 034671 46 IIDLSLLSSSTLCAKQEEELHKLRSLTSVTPSLPYNKEW 84 (87)
Q Consensus 46 VIDLs~L~~~~~~~~r~~~v~~I~~AC~e~~~~~~~~~~ 84 (87)
+||++.+.+ +....+++.+++ .+|.. |.+.|
T Consensus 2 ~id~~~i~~------~~~f~~~~~~~l-~fp~~-fG~Nl 32 (85)
T cd00489 2 VIDGEDIAD------WEDFHARLKKKL-GFPDY-YGHNL 32 (85)
T ss_pred EEecccCCC------HHHHHHHHHHHh-CCccc-cCCCH
Confidence 588877642 466788888888 67765 66554
No 40
>PF15421 Polysacc_deac_3: Putative polysaccharide deacetylase; PDB: 4DWE_A.
Probab=32.20 E-value=13 Score=29.46 Aligned_cols=16 Identities=50% Similarity=1.039 Sum_probs=10.8
Q ss_pred HhhCCCCCCCCccccC
Q 034671 72 TSVTPSLPYNKEWLFI 87 (87)
Q Consensus 72 C~e~~~~~~~~~~~~~ 87 (87)
--+-|.|-|||.|+|.
T Consensus 17 ~ieIppLKYNK~~l~~ 32 (425)
T PF15421_consen 17 KIEIPPLKYNKSWLFM 32 (425)
T ss_dssp EEE--SSGGG-SEEEE
T ss_pred EEecCcccccceeEEE
Confidence 3678999999999984
No 41
>cd00491 4Oxalocrotonate_Tautomerase 4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one dimer and the third from a neighboring monomer. Each monomer is a beta-alpha-beta fold with two small beta strands at the C-terminus that fold back on themselves. A pair of monomers form a dimer with two-fold symmetry, consisting of a 4-stranded beta sheet with two helices on one side and two additional small beta strands at each end. The dimers are assembled around a 3-fold axis of rotation to form a hexamer, with the short beta strands from each dimer contacting the neighboring dimers.
Probab=31.31 E-value=66 Score=17.21 Aligned_cols=34 Identities=18% Similarity=0.306 Sum_probs=20.1
Q ss_pred ceeeCCCCCCCchhhhHHHHHHHHHHHHhhCCCCC
Q 034671 45 PIIDLSLLSSSTLCAKQEEELHKLRSLTSVTPSLP 79 (87)
Q Consensus 45 PVIDLs~L~~~~~~~~r~~~v~~I~~AC~e~~~~~ 79 (87)
|+|.+.-+...+.+ ++.+++++|.++-.+.=..|
T Consensus 1 P~i~i~~~~grt~e-qk~~l~~~i~~~l~~~~g~~ 34 (58)
T cd00491 1 PFVQIYILEGRTDE-QKRELIERVTEAVSEILGAP 34 (58)
T ss_pred CEEEEEEcCCCCHH-HHHHHHHHHHHHHHHHhCcC
Confidence 56665433222222 37778889988887764444
No 42
>PF05184 SapB_1: Saposin-like type B, region 1; InterPro: IPR007856 Synonym(s):cerebroside sulphate activator, CSAct Saposin B is a small non-enzymatic glycoprotein required for the breakdown of cerebroside sulphates (sulphatides) in lysosomes. Saposin B contains three intramolecular disulphide bridges, exists as a dimer and is remarkably heat, protease, and pH stable. The crystal structure of human saposin B reveals an unusual shell-like dimer consisting of a monolayer of alpha-helices enclosing a large hydrophobic cavity. Although the secondary structure of saposin B is similar to that of the known monomeric members of the saposin-like superfamily, the helices are repacked into a different tertiary arrangement to form the homodimer. A comparison of the two forms of the saposin B dimer suggests that extraction of target lipids from membranes involves a conformational change that facilitates access to the inner cavity [].; GO: 0006629 lipid metabolic process; PDB: 1N69_C 1QDM_C 4DDJ_A 2DOB_A 1OF9_A 2Z9A_A 1M12_A 2GTG_A 1SN6_A 2QYP_B ....
Probab=29.20 E-value=70 Score=15.89 Aligned_cols=16 Identities=25% Similarity=0.264 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHhhCC
Q 034671 61 QEEELHKLRSLTSVTP 76 (87)
Q Consensus 61 r~~~v~~I~~AC~e~~ 76 (87)
.+++.+.|.++|..-|
T Consensus 24 ~~~I~~~l~~~C~~lP 39 (39)
T PF05184_consen 24 EEEIKKALEKACNKLP 39 (39)
T ss_dssp HHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHhhCc
Confidence 4778899999998765
No 43
>PF09220 LA-virus_coat: L-A virus, major coat protein; InterPro: IPR015302 Members of this entry include the major coat protein of the Saccharomyces cerevisiae virus L-A (ScV-L-A) []. The major coat protein is a large polypeptide without apparent domain division.; PDB: 1M1C_B.
Probab=28.48 E-value=57 Score=26.09 Aligned_cols=30 Identities=33% Similarity=0.300 Sum_probs=16.5
Q ss_pred CCCCCCceeeCCCCCCCchhhhHHHHHHHHHHHHhhCC
Q 034671 39 APLSPVPIIDLSLLSSSTLCAKQEEELHKLRSLTSVTP 76 (87)
Q Consensus 39 ~~~~~IPVIDLs~L~~~~~~~~r~~~v~~I~~AC~e~~ 76 (87)
.+....|.||+.+|. .+++.-+-.||.+|-
T Consensus 193 ~P~~d~p~iDlrgLt--------~~Ea~~VL~m~s~W~ 222 (436)
T PF09220_consen 193 FPQEDVPYIDLRGLT--------PEEATIVLMMCSEWK 222 (436)
T ss_dssp S-SSSS-EEE-TTS---------HHHHHHHHHHCS-B-
T ss_pred CcccCCceeeccCCC--------HHHHHHHHHHhhhhc
Confidence 345579999999873 233444558898874
No 44
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=27.79 E-value=68 Score=17.81 Aligned_cols=34 Identities=12% Similarity=0.293 Sum_probs=20.7
Q ss_pred ceeeCCCCCCCchhhhHHHHHHHHHHHHhhCCCCC
Q 034671 45 PIIDLSLLSSSTLCAKQEEELHKLRSLTSVTPSLP 79 (87)
Q Consensus 45 PVIDLs~L~~~~~~~~r~~~v~~I~~AC~e~~~~~ 79 (87)
|+|.+.-+.+-+.+ ++.+++++|.+|..+.=..|
T Consensus 2 P~i~i~~~~Grs~E-qK~~L~~~it~a~~~~~~~p 35 (60)
T PRK02289 2 PFVRIDLFEGRSQE-QKNALAREVTEVVSRIAKAP 35 (60)
T ss_pred CEEEEEECCCCCHH-HHHHHHHHHHHHHHHHhCcC
Confidence 56665443222222 37888899999887764444
No 45
>COG2450 Uncharacterized conserved protein [Function unknown]
Probab=27.62 E-value=1.1e+02 Score=20.46 Aligned_cols=33 Identities=18% Similarity=0.192 Sum_probs=25.3
Q ss_pred CCceeeCCCCCCCchhhhHHHHHHHHHHHHhhCCC
Q 034671 43 PVPIIDLSLLSSSTLCAKQEEELHKLRSLTSVTPS 77 (87)
Q Consensus 43 ~IPVIDLs~L~~~~~~~~r~~~v~~I~~AC~e~~~ 77 (87)
.|=|.|++.|...+.. ..+++++++.-.+++..
T Consensus 65 NIvIaDit~l~~d~~~--~~~V~e~lr~~a~~~gg 97 (124)
T COG2450 65 NIVIADITPLERDDDL--FERVIEELRDTAEEVGG 97 (124)
T ss_pred CEEEEEcCCcccChhH--HHHHHHHHHHHHHHhCc
Confidence 5889999998743322 68899999998888753
No 46
>PF01133 ER: Enhancer of rudimentary; InterPro: IPR000781 The Drosophila protein 'enhancer of rudimentary' (gene (e(r)) is a small protein of 104 residues whose function is not yet clear. From an evolutionary point of view, it is highly conserved [] and has been found to exist in probably all multicellular eukaryotic organisms. It has been proposed that this protein plays a role in the cell cycle.; GO: 0007049 cell cycle; PDB: 1W9G_A 2NML_A 1WWQ_A 1WZ7_B.
Probab=26.70 E-value=9.8 Score=24.61 Aligned_cols=9 Identities=44% Similarity=1.147 Sum_probs=5.6
Q ss_pred CCCCCCccc
Q 034671 77 SLPYNKEWL 85 (87)
Q Consensus 77 ~~~~~~~~~ 85 (87)
-.||||+|+
T Consensus 79 Y~P~nK~WI 87 (102)
T PF01133_consen 79 YVPHNKQWI 87 (102)
T ss_dssp EEEE-HHHH
T ss_pred cCCCCHHHH
Confidence 467888885
No 47
>KOG0325 consensus Lipoyltransferase [Energy production and conversion; Coenzyme transport and metabolism]
Probab=26.63 E-value=56 Score=23.98 Aligned_cols=29 Identities=24% Similarity=0.205 Sum_probs=19.0
Q ss_pred CCceeeCCCCCCCchhhhHHHHHHHHHHHHhhCC
Q 034671 43 PVPIIDLSLLSSSTLCAKQEEELHKLRSLTSVTP 76 (87)
Q Consensus 43 ~IPVIDLs~L~~~~~~~~r~~~v~~I~~AC~e~~ 76 (87)
.-|||||..+--+. ..-|..|-+||..++
T Consensus 97 ~ypIidL~~f~~~~-----r~~Vs~le~~c~~~~ 125 (226)
T KOG0325|consen 97 AYPIIDLRHFGFSA-----RCYVSTLEAACPDFG 125 (226)
T ss_pred EEEEEEeeccccch-----hhHHHHHHhhccccc
Confidence 37999998763221 334666779997554
No 48
>TIGR02697 WPE_wolbac Wolbachia palindromic element (WPE) domain. This domain conceptually resembles TIGR01045, the Rickettsial palindromic element (RPE) domain. In both cases, a protein-coding palindromic element spreads through a genome, inserting usually in protein-coding regions. The additional protein coding sequence is thought to allow function of the host protein because of location in surface-exposed regions of the protein structure. Note that this model appears to work better in fragment mode.
Probab=24.37 E-value=28 Score=18.43 Aligned_cols=6 Identities=67% Similarity=1.813 Sum_probs=4.3
Q ss_pred CCCccc
Q 034671 80 YNKEWL 85 (87)
Q Consensus 80 ~~~~~~ 85 (87)
|||+|+
T Consensus 23 ~nk~WI 28 (36)
T TIGR02697 23 YNKNWI 28 (36)
T ss_pred hccCce
Confidence 668885
No 49
>PF02505 MCR_D: Methyl-coenzyme M reductase operon protein D; InterPro: IPR003901 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein D.; GO: 0015948 methanogenesis
Probab=22.79 E-value=74 Score=22.02 Aligned_cols=20 Identities=20% Similarity=0.461 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHhhCCCCCCC
Q 034671 62 EEELHKLRSLTSVTPSLPYN 81 (87)
Q Consensus 62 ~~~v~~I~~AC~e~~~~~~~ 81 (87)
+.++.+|.+||+++=..+|+
T Consensus 85 ~~~ie~I~~iCee~lpf~y~ 104 (153)
T PF02505_consen 85 EDVIEKIREICEEVLPFGYD 104 (153)
T ss_pred HHHHHHHHHHHHHhCCCceE
Confidence 46899999999997655554
No 50
>cd00523 archeal_HJR Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain eukaryotes, however this CD includes only the archeal HJR's. The bacterial and archeal HJRs perform a similar function but differ in both sequence and structure. Structural similarity does however, exist between the archeal HJRs and type II restriction endonucleases, such as EcoRV, BglII, and Fok, and this similarity includes their active site configurations.
Probab=22.37 E-value=60 Score=21.30 Aligned_cols=26 Identities=35% Similarity=0.618 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhhCCCCCC-----C-CccccC
Q 034671 62 EEELHKLRSLTSVTPSLPY-----N-KEWLFI 87 (87)
Q Consensus 62 ~~~v~~I~~AC~e~~~~~~-----~-~~~~~~ 87 (87)
.+-+++|..+|+.+.--|| + ++|.||
T Consensus 64 ~~K~~rl~~~a~~~~~~~~ia~k~~~~~w~f~ 95 (123)
T cd00523 64 KEQVEKLVEFARRFGGEPYLAVKFPRKGWRFI 95 (123)
T ss_pred HHHHHHHHHHHHHhCCeEEEEEEECCCceEEE
Confidence 4568899999999988775 3 888885
No 51
>COG4110 Uncharacterized protein involved in stress response [General function prediction only]
Probab=21.95 E-value=48 Score=23.55 Aligned_cols=19 Identities=16% Similarity=0.218 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHhhCCCCCC
Q 034671 62 EEELHKLRSLTSVTPSLPY 80 (87)
Q Consensus 62 ~~~v~~I~~AC~e~~~~~~ 80 (87)
.-+||+|+.+--.+-+.||
T Consensus 65 kGviQALGN~FGSy~~~Py 83 (200)
T COG4110 65 KGVIQALGNAFGSYRDEPY 83 (200)
T ss_pred hHHHHHHhhhhcccccCce
Confidence 5699999999999999998
No 52
>PF14483 Cut8_M: Cut8 dimerisation domain; PDB: 3Q5W_A 3Q5X_A.
Probab=20.94 E-value=1.3e+02 Score=15.77 Aligned_cols=17 Identities=24% Similarity=0.317 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHhhCCC
Q 034671 61 QEEELHKLRSLTSVTPS 77 (87)
Q Consensus 61 r~~~v~~I~~AC~e~~~ 77 (87)
++....-|.+.|++||.
T Consensus 12 ~~qL~~lL~~l~~~HPe 28 (38)
T PF14483_consen 12 KDQLQSLLQSLCERHPE 28 (38)
T ss_dssp HHHHHHHHHHHHHHSTH
T ss_pred HHHHHHHHHHHHHhChh
Confidence 45666778899999985
No 53
>KOG1766 consensus Enhancer of rudimentary [General function prediction only]
Probab=20.46 E-value=29 Score=22.41 Aligned_cols=13 Identities=38% Similarity=1.081 Sum_probs=9.7
Q ss_pred hhCCCCCCCCccc
Q 034671 73 SVTPSLPYNKEWL 85 (87)
Q Consensus 73 ~e~~~~~~~~~~~ 85 (87)
+..--.||||.|+
T Consensus 75 ~t~tY~pynk~wI 87 (104)
T KOG1766|consen 75 ETGTYIPYNKDWI 87 (104)
T ss_pred ccccccCccHHHH
Confidence 3445689999995
No 54
>cd02135 Arsenite_oxidase Nitroreductase-like family which includes NADH oxidase and arsenite oxidiase. NADH oxidase catalyses the oxidation of NAD(P)H and accepts a wide broad range of compounds as electron acceptors, such as nitrocompound. Arsenite oxidase in a beta-proteobacterial strain is able to oxidize arsenite to arsenate.
Probab=20.40 E-value=1.1e+02 Score=19.41 Aligned_cols=26 Identities=23% Similarity=0.446 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhhCCCCCCCCccccC
Q 034671 62 EEELHKLRSLTSVTPSLPYNKEWLFI 87 (87)
Q Consensus 62 ~~~v~~I~~AC~e~~~~~~~~~~~~~ 87 (87)
++.+++|.+|++.-||.-....|-|+
T Consensus 20 ~e~l~~il~aA~~APs~~n~Qpw~f~ 45 (160)
T cd02135 20 REQLEQILEAAARAPDHGKLEPWRFI 45 (160)
T ss_pred HHHHHHHHHHHHhCCCcCCccCeEEE
Confidence 56889999999999997655677653
No 55
>TIGR03260 met_CoM_red_D methyl-coenzyme M reductase operon protein D. Members of this protein family are protein D, a non-structural protein, of the operon for methyl coenzyme M reductase, also called coenzyme-B sulfoethylthiotransferase (EC 2.8.4.1). That enzyme, with alpha, beta, and gamma subunits, catalyzes the last step in methanogenesis; it has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this model does not separate the isozymes. Proteins in this family are expressed at much lower levels than the methyl-coenzyme M reductase itself and associate and have been shown to form at least transient associations. The precise function is unknown.
Probab=20.27 E-value=86 Score=21.64 Aligned_cols=20 Identities=10% Similarity=0.293 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHhhCCCCCCC
Q 034671 62 EEELHKLRSLTSVTPSLPYN 81 (87)
Q Consensus 62 ~~~v~~I~~AC~e~~~~~~~ 81 (87)
+.++.+|.+||+++=..+|+
T Consensus 83 ~~~i~~I~eiC~e~~pF~y~ 102 (150)
T TIGR03260 83 EDIVEEIEEICKEMLPFGYE 102 (150)
T ss_pred HHHHHHHHHHHHhhCCCceE
Confidence 56899999999998666664
No 56
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=20.02 E-value=1e+02 Score=18.20 Aligned_cols=15 Identities=7% Similarity=0.067 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHhhC
Q 034671 61 QEEELHKLRSLTSVT 75 (87)
Q Consensus 61 r~~~v~~I~~AC~e~ 75 (87)
|+.++..|+.||.+.
T Consensus 35 Rd~~~~~l~~a~~e~ 49 (69)
T PF14197_consen 35 RDSAERQLGDAYEEN 49 (69)
T ss_pred HHHHHHHHHHHHHHH
Confidence 778999999999864
Done!