Query 034671
Match_columns 87
No_of_seqs 121 out of 888
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 08:19:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034671.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034671hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gp6_A Leucoanthocyanidin diox 99.0 9.7E-11 3.3E-15 87.2 3.7 66 10-76 5-78 (356)
2 1odm_A Isopenicillin N synthas 97.6 3.1E-05 1.1E-09 56.8 3.5 34 42-76 7-40 (331)
3 1w9y_A 1-aminocyclopropane-1-c 97.4 7.5E-05 2.6E-09 54.6 3.3 30 43-76 3-32 (319)
4 3oox_A Putative 2OG-Fe(II) oxy 97.0 9.6E-05 3.3E-09 53.7 0.1 29 43-76 6-34 (312)
5 3on7_A Oxidoreductase, iron/as 96.2 0.0015 5E-08 46.9 1.6 24 43-76 3-26 (280)
6 1dcs_A Deacetoxycephalosporin 95.9 0.0014 4.8E-08 47.6 0.3 27 43-76 4-30 (311)
7 1dj8_A HDEA, protein HNS-depen 69.4 1.5 5.2E-05 26.7 0.9 27 44-79 47-73 (89)
8 2xuv_A HDEB, 10K-L protein; un 43.9 13 0.00043 22.0 1.9 18 62-79 48-65 (79)
9 3abf_A 4-oxalocrotonate tautom 40.8 16 0.00055 19.1 1.9 34 45-79 2-35 (64)
10 3kny_A Hypothetical protein BT 40.7 16 0.00056 24.9 2.3 41 43-83 51-91 (218)
11 2b5b_A Defensin; antibiotic; N 35.0 13 0.00045 18.5 0.8 9 74-82 16-24 (36)
12 4dwe_A Uncharacterized protein 31.5 10 0.00036 29.3 0.1 15 73-87 64-78 (480)
13 1otf_A 4-oxalocrotonate tautom 28.4 21 0.00072 18.5 1.0 34 45-79 1-34 (62)
14 2nml_A Enhancer of rudimentary 28.0 6.1 0.00021 24.7 -1.5 9 77-85 79-87 (104)
15 2x4k_A 4-oxalocrotonate tautom 26.3 25 0.00084 18.0 1.0 36 44-80 3-38 (63)
16 1sbo_A Putative anti-sigma fac 26.1 92 0.0032 17.4 4.0 29 46-76 48-76 (110)
17 3m20_A 4-oxalocrotonate tautom 25.2 53 0.0018 17.3 2.3 19 61-79 15-33 (62)
18 1t3w_A DNA primase; DNAG, DNA- 24.6 60 0.002 20.5 2.8 18 62-79 49-66 (148)
19 2opa_A Probable tautomerase YW 23.6 29 0.001 17.8 1.0 34 45-79 1-34 (61)
20 4dgh_A Sulfate permease family 23.0 1.3E+02 0.0043 17.8 4.1 31 44-76 51-81 (130)
21 2kgf_A Capsid protein P27; ret 22.8 47 0.0016 21.6 2.1 19 62-80 21-40 (140)
22 2v4x_A JSRV capsid, capsid pro 22.2 50 0.0017 21.5 2.1 19 62-80 16-35 (140)
23 3mb2_A 4-oxalocrotonate tautom 21.3 30 0.001 18.9 0.8 34 45-79 2-35 (72)
24 1m1c_A GAG protein, major coat 21.0 76 0.0026 25.6 3.2 30 40-77 194-223 (680)
No 1
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A*
Probab=99.04 E-value=9.7e-11 Score=87.17 Aligned_cols=66 Identities=21% Similarity=0.162 Sum_probs=51.0
Q ss_pred ccHHHHHh-CCCCCCCCCcCCCCCCC-ccc---CC---CCCCCceeeCCCCCCCchhhhHHHHHHHHHHHHhhCC
Q 034671 10 KRVQELVL-NGEEPPASYICRDGDSI-QEV---SA---PLSPVPIIDLSLLSSSTLCAKQEEELHKLRSLTSVTP 76 (87)
Q Consensus 10 ~~vq~Lv~-~~~~VP~~Yv~p~~~rp-~~~---~~---~~~~IPVIDLs~L~~~~~~~~r~~~v~~I~~AC~e~~ 76 (87)
++||+|+. ++.+||++||+|.++++ ... .. ....||||||+.|.+++.. .|.+++++|++||++|.
T Consensus 5 ~~v~~l~~~~~~~vP~~~~~p~~~~~~~~~~~~~~~~~~~~~iPvIDls~l~~~~~~-~~~~~~~~l~~A~~~~G 78 (356)
T 1gp6_A 5 ERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEK-IRENCIEELKKASLDWG 78 (356)
T ss_dssp CCHHHHHHTTCSSCCGGGSCCHHHHTTCCCHHHHHHCCCSCCCCEEECTTTTCSCHH-HHHHHHHHHHHHHHHTS
T ss_pred ccHHHHHhcCCCCCCHHhcCCchhcccccccccccccccCCCCCEEEchhccCCChH-HHHHHHHHHHHHHHhCC
Confidence 67999997 88999999999988776 221 01 0236999999998765543 27789999999999986
No 2
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ...
Probab=97.64 E-value=3.1e-05 Score=56.78 Aligned_cols=34 Identities=21% Similarity=0.211 Sum_probs=27.8
Q ss_pred CCCceeeCCCCCCCchhhhHHHHHHHHHHHHhhCC
Q 034671 42 SPVPIIDLSLLSSSTLCAKQEEELHKLRSLTSVTP 76 (87)
Q Consensus 42 ~~IPVIDLs~L~~~~~~~~r~~~v~~I~~AC~e~~ 76 (87)
..||||||+.|.+++.. .|.+++++|++||+++.
T Consensus 7 ~~iPvIDls~l~~~~~~-~~~~~~~~l~~A~~~~G 40 (331)
T 1odm_A 7 ANVPKIDVSPLFGDDQA-AKMRVAQQIDAASRDTG 40 (331)
T ss_dssp CCCCEEECGGGGSSCHH-HHHHHHHHHHHHHHTTS
T ss_pred CCCCEEEchHhcCCChH-HHHHHHHHHHHHHHhCC
Confidence 36999999998665543 27789999999999986
No 3
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X
Probab=97.45 E-value=7.5e-05 Score=54.64 Aligned_cols=30 Identities=13% Similarity=0.193 Sum_probs=25.1
Q ss_pred CCceeeCCCCCCCchhhhHHHHHHHHHHHHhhCC
Q 034671 43 PVPIIDLSLLSSSTLCAKQEEELHKLRSLTSVTP 76 (87)
Q Consensus 43 ~IPVIDLs~L~~~~~~~~r~~~v~~I~~AC~e~~ 76 (87)
.||||||+.+... . |.+++++|++||++|.
T Consensus 3 ~iPvIDls~l~~~--~--~~~~~~~l~~A~~~~G 32 (319)
T 1w9y_A 3 NFPIISLDKVNGV--E--RAATMEMIKDACENWG 32 (319)
T ss_dssp CCCEEEGGGGGST--T--HHHHHHHHHHHHHHTS
T ss_pred CCCEEECcccCcc--c--HHHHHHHHHHHHHhCC
Confidence 5999999987522 2 7889999999999986
No 4
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15}
Probab=97.04 E-value=9.6e-05 Score=53.67 Aligned_cols=29 Identities=10% Similarity=-0.004 Sum_probs=24.3
Q ss_pred CCceeeCCCCCCCchhhhHHHHHHHHHHHHhhCC
Q 034671 43 PVPIIDLSLLSSSTLCAKQEEELHKLRSLTSVTP 76 (87)
Q Consensus 43 ~IPVIDLs~L~~~~~~~~r~~~v~~I~~AC~e~~ 76 (87)
+||||||+.+.+ . |.+++++|++||+++.
T Consensus 6 ~iPvIDls~~~~---~--~~~~~~~l~~A~~~~G 34 (312)
T 3oox_A 6 AIDPVSFSLYAK---D--FTRFAQELGASFERYG 34 (312)
T ss_dssp SSCCEETHHHHH---C--HHHHHHHHHHHHHHHS
T ss_pred CCCeEEChHhcc---c--HHHHHHHHHHHHHhCc
Confidence 699999998743 2 6889999999999875
No 5
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis}
Probab=96.24 E-value=0.0015 Score=46.90 Aligned_cols=24 Identities=13% Similarity=0.097 Sum_probs=18.8
Q ss_pred CCceeeCCCCCCCchhhhHHHHHHHHHHHHhhCC
Q 034671 43 PVPIIDLSLLSSSTLCAKQEEELHKLRSLTSVTP 76 (87)
Q Consensus 43 ~IPVIDLs~L~~~~~~~~r~~~v~~I~~AC~e~~ 76 (87)
+||||||+.. +++++|++||+++.
T Consensus 3 ~IPvIDls~~----------~~~~~l~~A~~~~G 26 (280)
T 3on7_A 3 KLETIDYRAA----------DSAKRFVESLRETG 26 (280)
T ss_dssp -CCEEETTST----------THHHHHHHHHHHHS
T ss_pred CCCEEECCCh----------hHHHHHHHHHHhCC
Confidence 6999999862 24688999999875
No 6
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A*
Probab=95.95 E-value=0.0014 Score=47.56 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=20.9
Q ss_pred CCceeeCCCCCCCchhhhHHHHHHHHHHHHhhCC
Q 034671 43 PVPIIDLSLLSSSTLCAKQEEELHKLRSLTSVTP 76 (87)
Q Consensus 43 ~IPVIDLs~L~~~~~~~~r~~~v~~I~~AC~e~~ 76 (87)
.||||||+.|.+++. . ++|++||+++.
T Consensus 4 ~iPvIDls~l~~~~~----~---~~l~~A~~~~G 30 (311)
T 1dcs_A 4 TVPTFSLAELQQGLH----Q---DEFRRCLRDKG 30 (311)
T ss_dssp CCCEEEHHHHHTTCS----H---HHHHHHHHHTC
T ss_pred CCcEEEchhhcCCCH----H---HHHHHHHHhCc
Confidence 699999998755442 2 28999999986
No 7
>1dj8_A HDEA, protein HNS-dependent expression A; alpha helical, structural protein; 2.00A {Escherichia coli} SCOP: a.57.1.1 PDB: 1bg8_A
Probab=69.37 E-value=1.5 Score=26.66 Aligned_cols=27 Identities=4% Similarity=-0.050 Sum_probs=21.2
Q ss_pred CceeeCCCCCCCchhhhHHHHHHHHHHHHhhCCCCC
Q 034671 44 VPIIDLSLLSSSTLCAKQEEELHKLRSLTSVTPSLP 79 (87)
Q Consensus 44 IPVIDLs~L~~~~~~~~r~~~v~~I~~AC~e~~~~~ 79 (87)
-++||+.. -..++-+|...|+++|..-
T Consensus 47 d~vvD~~~---------~e~v~P~vve~Ckk~P~~s 73 (89)
T 1dj8_A 47 DAVLDVQG---------IATVTPAIVQACTQDKQAN 73 (89)
T ss_dssp GCCCCHHH---------HHHHHHHHHHHHHTTTTSB
T ss_pred CceeehhH---------HHHhhHHHHHHHHhCchhH
Confidence 36888875 3556899999999999753
No 8
>2xuv_A HDEB, 10K-L protein; unknown function; HET: MLY; 1.50A {Escherichia coli}
Probab=43.95 E-value=13 Score=21.99 Aligned_cols=18 Identities=6% Similarity=0.127 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHhhCCCCC
Q 034671 62 EEELHKLRSLTSVTPSLP 79 (87)
Q Consensus 62 ~~~v~~I~~AC~e~~~~~ 79 (87)
...+-+|...|+++|..-
T Consensus 48 ~~~~Pkvie~Ckk~P~~s 65 (79)
T 2xuv_A 48 LTQIPXVIEYCXXNPQXN 65 (79)
T ss_dssp HHHHHHHHHHHHHCTTSB
T ss_pred hhcccHHHHHHhcCCcch
Confidence 346889999999999753
No 9
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=40.79 E-value=16 Score=19.14 Aligned_cols=34 Identities=21% Similarity=0.308 Sum_probs=21.4
Q ss_pred ceeeCCCCCCCchhhhHHHHHHHHHHHHhhCCCCC
Q 034671 45 PIIDLSLLSSSTLCAKQEEELHKLRSLTSVTPSLP 79 (87)
Q Consensus 45 PVIDLs~L~~~~~~~~r~~~v~~I~~AC~e~~~~~ 79 (87)
|+|.+.-...-+.+ ++.+.+++|.++..+....|
T Consensus 2 P~i~i~~~~g~s~e-qk~~l~~~lt~~l~~~lg~~ 35 (64)
T 3abf_A 2 VVLKVTLLEGRPPE-KKRELVRRLTEMASRLLGEP 35 (64)
T ss_dssp EEEEEEEETTCCHH-HHHHHHHHHHHHHHHHTTCC
T ss_pred CEEEEEECCCCCHH-HHHHHHHHHHHHHHHHhCCC
Confidence 66776432221221 26778899999998876665
No 10
>3kny_A Hypothetical protein BT_3535; structural genomics, joint center for structural genomics, J protein structure initiative; 2.60A {Bacteroides thetaiotaomicron vpi-5482}
Probab=40.70 E-value=16 Score=24.89 Aligned_cols=41 Identities=15% Similarity=0.067 Sum_probs=30.0
Q ss_pred CCceeeCCCCCCCchhhhHHHHHHHHHHHHhhCCCCCCCCc
Q 034671 43 PVPIIDLSLLSSSTLCAKQEEELHKLRSLTSVTPSLPYNKE 83 (87)
Q Consensus 43 ~IPVIDLs~L~~~~~~~~r~~~v~~I~~AC~e~~~~~~~~~ 83 (87)
++==||.|.|...=.++++.++.+.|..+|+.--..-|||+
T Consensus 51 s~YqIDYSfLkkdISkEqKkeLYd~I~~iCerIE~G~ynk~ 91 (218)
T 3kny_A 51 SRYEINYSFLKKDISEKRKKEIYDCINNICERIEKGQINKY 91 (218)
T ss_dssp TTEEECCGGGSSCCCHHHHHHHHHHHHHHHHHHHTTSSCSC
T ss_pred hheEeeHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCceehh
Confidence 46678988774322211367788999999999888889886
No 11
>2b5b_A Defensin; antibiotic; NMR {Caretta caretta}
Probab=34.98 E-value=13 Score=18.48 Aligned_cols=9 Identities=56% Similarity=1.014 Sum_probs=7.1
Q ss_pred hCCCCCCCC
Q 034671 74 VTPSLPYNK 82 (87)
Q Consensus 74 e~~~~~~~~ 82 (87)
+.|.||||-
T Consensus 16 erptlpync 24 (36)
T 2b5b_A 16 ERPTLPYNC 24 (36)
T ss_dssp CCSSCSSSB
T ss_pred CCCCcCccC
Confidence 568899984
No 12
>4dwe_A Uncharacterized protein; hypothetical protein, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.01A {Bacteroides ovatus}
Probab=31.51 E-value=10 Score=29.31 Aligned_cols=15 Identities=53% Similarity=1.265 Sum_probs=13.2
Q ss_pred hhCCCCCCCCccccC
Q 034671 73 SVTPSLPYNKEWLFI 87 (87)
Q Consensus 73 ~e~~~~~~~~~~~~~ 87 (87)
-+-|.|-|||.|+|.
T Consensus 64 ieIpPLKYNK~~lf~ 78 (480)
T 4dwe_A 64 TEIPTLKYNKDWLFL 78 (480)
T ss_dssp EECCSSGGGCSEEEE
T ss_pred EecCcccccceeEEE
Confidence 578999999999984
No 13
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=28.36 E-value=21 Score=18.47 Aligned_cols=34 Identities=18% Similarity=0.285 Sum_probs=20.2
Q ss_pred ceeeCCCCCCCchhhhHHHHHHHHHHHHhhCCCCC
Q 034671 45 PIIDLSLLSSSTLCAKQEEELHKLRSLTSVTPSLP 79 (87)
Q Consensus 45 PVIDLs~L~~~~~~~~r~~~v~~I~~AC~e~~~~~ 79 (87)
|+|.+..+..-+.+ ++.+++++|.++..++-..|
T Consensus 1 P~i~I~~~~grs~e-~k~~l~~~i~~~l~~~lg~p 34 (62)
T 1otf_A 1 PIAQLYIIEGRTDE-QKETLIRQVSEAMANSLDAP 34 (62)
T ss_dssp CEEEEEEESCCCHH-HHHHHHHHHHHHHHHHHTCC
T ss_pred CEEEEEEcCCCCHH-HHHHHHHHHHHHHHHHhCcC
Confidence 55665322222222 36778899999888865444
No 14
>2nml_A Enhancer of rudimentary homolog; HEF2/ERH fold, pseudo beta barrel, interaction network, transcription, cell cycle; 1.55A {Homo sapiens} SCOP: d.330.1.1 PDB: 1w9g_A 1wwq_A 1wz7_A
Probab=27.98 E-value=6.1 Score=24.74 Aligned_cols=9 Identities=56% Similarity=1.427 Sum_probs=6.4
Q ss_pred CCCCCCccc
Q 034671 77 SLPYNKEWL 85 (87)
Q Consensus 77 ~~~~~~~~~ 85 (87)
-.||||+|+
T Consensus 79 Y~P~~K~WI 87 (104)
T 2nml_A 79 YQPYNKDWI 87 (104)
T ss_dssp EEEECHHHH
T ss_pred cCCCCHHHH
Confidence 357888885
No 15
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=26.29 E-value=25 Score=18.04 Aligned_cols=36 Identities=14% Similarity=0.222 Sum_probs=22.8
Q ss_pred CceeeCCCCCCCchhhhHHHHHHHHHHHHhhCCCCCC
Q 034671 44 VPIIDLSLLSSSTLCAKQEEELHKLRSLTSVTPSLPY 80 (87)
Q Consensus 44 IPVIDLs~L~~~~~~~~r~~~v~~I~~AC~e~~~~~~ 80 (87)
.|.|.+..+.+-+.+ ++.+++++|.++..+.-..|-
T Consensus 3 MP~i~i~~~~g~s~e-~k~~l~~~l~~~l~~~lg~p~ 38 (63)
T 2x4k_A 3 MPIVNVKLLEGRSDE-QLKNLVSEVTDAVEKTTGANR 38 (63)
T ss_dssp CCEEEEEEESCCCHH-HHHHHHHHHHHHHHHHHCCCG
T ss_pred CCEEEEEEcCCCCHH-HHHHHHHHHHHHHHHHhCcCc
Confidence 577777533222222 267788999999888755553
No 16
>1sbo_A Putative anti-sigma factor antagonist TM1442; open sandwich, JCSG, structural genomics, joint center for structural genomics, PSI; NMR {Thermotoga maritima} SCOP: c.13.2.1 PDB: 1t6r_A* 1vc1_A
Probab=26.10 E-value=92 Score=17.38 Aligned_cols=29 Identities=17% Similarity=0.103 Sum_probs=19.1
Q ss_pred eeeCCCCCCCchhhhHHHHHHHHHHHHhhCC
Q 034671 46 IIDLSLLSSSTLCAKQEEELHKLRSLTSVTP 76 (87)
Q Consensus 46 VIDLs~L~~~~~~~~r~~~v~~I~~AC~e~~ 76 (87)
||||+.+..-|.. --..+..+.+.|++..
T Consensus 48 vlDls~v~~iDss--gl~~L~~~~~~~~~~g 76 (110)
T 1sbo_A 48 VLDLSSVSYMDSA--GLGTLVVILKDAKING 76 (110)
T ss_dssp EEECTTCCCBCHH--HHHHHHHHHHHHHHTT
T ss_pred EEECCCCcEEccH--HHHHHHHHHHHHHHcC
Confidence 8999987655543 2456666777776643
No 17
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=25.19 E-value=53 Score=17.30 Aligned_cols=19 Identities=16% Similarity=0.228 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHhhCCCCC
Q 034671 61 QEEELHKLRSLTSVTPSLP 79 (87)
Q Consensus 61 r~~~v~~I~~AC~e~~~~~ 79 (87)
+.+++++|.++..+.-..|
T Consensus 15 K~~L~~~it~~~~~~lg~~ 33 (62)
T 3m20_A 15 KREFVERLTSVAAEIYGMD 33 (62)
T ss_dssp HHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHhCcC
Confidence 6778889988887755444
No 18
>1t3w_A DNA primase; DNAG, DNA-directed RNA polymerase, E. coli, DNA replication, replication; HET: DNA MSE; 2.80A {Escherichia coli} SCOP: a.236.1.1 PDB: 2haj_A*
Probab=24.63 E-value=60 Score=20.45 Aligned_cols=18 Identities=17% Similarity=0.141 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHhhCCCCC
Q 034671 62 EEELHKLRSLTSVTPSLP 79 (87)
Q Consensus 62 ~~~v~~I~~AC~e~~~~~ 79 (87)
...+.+|.+.|+++|...
T Consensus 49 ~~Ll~~L~e~~~~~p~~~ 66 (148)
T 1t3w_A 49 LGLFRELVNTCLSQPGLT 66 (148)
T ss_dssp HHHHHHHHHHHHTSTTCC
T ss_pred HHHHHHHHHHHHHCCCCC
Confidence 567889999999999765
No 19
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=23.63 E-value=29 Score=17.84 Aligned_cols=34 Identities=15% Similarity=0.222 Sum_probs=19.9
Q ss_pred ceeeCCCCCCCchhhhHHHHHHHHHHHHhhCCCCC
Q 034671 45 PIIDLSLLSSSTLCAKQEEELHKLRSLTSVTPSLP 79 (87)
Q Consensus 45 PVIDLs~L~~~~~~~~r~~~v~~I~~AC~e~~~~~ 79 (87)
|+|.+.-+.+-+.+ ++.+++++|.++..++-..|
T Consensus 1 P~i~i~~~~grs~e-qk~~l~~~i~~~l~~~lg~~ 34 (61)
T 2opa_A 1 PYVTVKMLEGRTDE-QKRNLVEKVTEAVKETTGAS 34 (61)
T ss_dssp CEEEEEEESCCCHH-HHHHHHHHHHHHHHHHHCCC
T ss_pred CEEEEEEcCCCCHH-HHHHHHHHHHHHHHHHhCcC
Confidence 56666432222222 36778889999888764444
No 20
>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*
Probab=23.04 E-value=1.3e+02 Score=17.84 Aligned_cols=31 Identities=10% Similarity=0.079 Sum_probs=20.3
Q ss_pred CceeeCCCCCCCchhhhHHHHHHHHHHHHhhCC
Q 034671 44 VPIIDLSLLSSSTLCAKQEEELHKLRSLTSVTP 76 (87)
Q Consensus 44 IPVIDLs~L~~~~~~~~r~~~v~~I~~AC~e~~ 76 (87)
.=||||+....-|.. --.++.++.+.|++..
T Consensus 51 ~vvlDls~v~~iDss--gl~~L~~~~~~~~~~g 81 (130)
T 4dgh_A 51 ILILRLKWVPFMDIT--GIQTLEEMIQSFHKRG 81 (130)
T ss_dssp EEEEECTTCCCCCHH--HHHHHHHHHHHHHTTT
T ss_pred EEEEECCCCCcccHH--HHHHHHHHHHHHHHCC
Confidence 448999987555543 2556777777777653
No 21
>2kgf_A Capsid protein P27; retrovirus capsid protein, N-terminal core domain (SCOP), viral protein; NMR {Mason-pfizer monkey virus}
Probab=22.85 E-value=47 Score=21.58 Aligned_cols=19 Identities=21% Similarity=0.333 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHhhCCC-CCC
Q 034671 62 EEELHKLRSLTSVTPS-LPY 80 (87)
Q Consensus 62 ~~~v~~I~~AC~e~~~-~~~ 80 (87)
-+.|++|..||+++.. .||
T Consensus 21 ~K~iKeLk~Av~~YGp~APy 40 (140)
T 2kgf_A 21 FAVIKELKTAASQYGATAPY 40 (140)
T ss_dssp HHHHHHHHHHHHHTCTTSHH
T ss_pred HHHHHHHHHHHHHhCCCCch
Confidence 4689999999999863 344
No 22
>2v4x_A JSRV capsid, capsid protein P27; virion, zinc-finger, metal-binding, CAPS protein, structural protein, viral nucleoprotein; HET: MSE; 1.5A {Jaagsiekte sheep retrovirus}
Probab=22.17 E-value=50 Score=21.49 Aligned_cols=19 Identities=21% Similarity=0.302 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHhhCCC-CCC
Q 034671 62 EEELHKLRSLTSVTPS-LPY 80 (87)
Q Consensus 62 ~~~v~~I~~AC~e~~~-~~~ 80 (87)
-+.|++|..||+++.. .||
T Consensus 16 ~K~IkeLk~Av~~YGp~APy 35 (140)
T 2v4x_A 16 FKQLKELKIACSQYGPTAPF 35 (140)
T ss_dssp HHHHHHHHHHHHHTCTTSHH
T ss_pred HHHHHHHHHHHHHhCCCCch
Confidence 4689999999999863 344
No 23
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=21.31 E-value=30 Score=18.90 Aligned_cols=34 Identities=12% Similarity=0.263 Sum_probs=21.4
Q ss_pred ceeeCCCCCCCchhhhHHHHHHHHHHHHhhCCCCC
Q 034671 45 PIIDLSLLSSSTLCAKQEEELHKLRSLTSVTPSLP 79 (87)
Q Consensus 45 PVIDLs~L~~~~~~~~r~~~v~~I~~AC~e~~~~~ 79 (87)
|+|.+.-+..-+.+ ++.+++++|.++..+....|
T Consensus 2 P~I~I~~~~grs~e-qK~~L~~~it~~l~~~lg~p 35 (72)
T 3mb2_A 2 LLLRITMLEGRSTE-QKAELARALSAAAAAAFDVP 35 (72)
T ss_dssp EEEEEEEESCCCHH-HHHHHHHHHHHHHHHHHTCC
T ss_pred CEEEEEEcCCCCHH-HHHHHHHHHHHHHHHHhCCC
Confidence 66666433222222 36778899999998866555
No 24
>1m1c_A GAG protein, major coat protein; dsRNA virus structure, RNA-protein interaction, mRNA decapping, L-A virus, QUAI-equivalence; 3.50A {Saccharomyces cerevisiae virus l-a} SCOP: e.42.1.1
Probab=21.04 E-value=76 Score=25.60 Aligned_cols=30 Identities=23% Similarity=0.257 Sum_probs=21.4
Q ss_pred CCCCCceeeCCCCCCCchhhhHHHHHHHHHHHHhhCCC
Q 034671 40 PLSPVPIIDLSLLSSSTLCAKQEEELHKLRSLTSVTPS 77 (87)
Q Consensus 40 ~~~~IPVIDLs~L~~~~~~~~r~~~v~~I~~AC~e~~~ 77 (87)
+..+.|.||+.+|. .+++.-+..+|.+|--
T Consensus 194 P~~d~p~iDlrgLt--------~eEa~~Vl~m~seW~~ 223 (680)
T 1m1c_A 194 PSIDVPYLDVRPLT--------VTEVNFVLMMMSKWHR 223 (680)
T ss_dssp CSSSSCEEECTTSC--------HHHHHHHHHHTSCBCC
T ss_pred cccCCceEeccCCC--------HHHHHHHHHHHhhhcc
Confidence 44579999999873 3344556899988753
Done!