BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034673
(87 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q1A173|RADL6_ARATH Protein RADIALIS-like 6 OS=Arabidopsis thaliana GN=RL6 PE=2 SV=1
Length = 97
Score = 106 bits (264), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 55/83 (66%), Positives = 63/83 (75%), Gaps = 1/83 (1%)
Query: 5 QNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYDRLVEDLIFIESAQFPLPNY 64
QNK FERALAVYDKDTPDRW NVA+AVGG K+ ++VKRHYD LVEDLI IE+ + PLPNY
Sbjct: 16 QNKMFERALAVYDKDTPDRWHNVAKAVGG-KTVEEVKRHYDILVEDLINIETGRVPLPNY 74
Query: 65 KNTGNNCIGILADAPRLMKNLKL 87
K +N I R MKNLK+
Sbjct: 75 KTFESNSRSINDFDTRKMKNLKI 97
>sp|Q8GW75|RADL5_ARATH Protein RADIALIS-like 5 OS=Arabidopsis thaliana GN=RL5 PE=3 SV=1
Length = 100
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/86 (62%), Positives = 64/86 (74%), Gaps = 3/86 (3%)
Query: 4 EQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYDRLVEDLIFIESAQFPLPN 63
+QNK FERALAVYDKDTPDRWQNVA+AV G KS ++VKRHYD LVEDL+ IE PLP
Sbjct: 15 KQNKMFERALAVYDKDTPDRWQNVAKAV-GSKSAEEVKRHYDILVEDLMNIEQDLVPLPK 73
Query: 64 YK--NTGNNCIGILADAPRLMKNLKL 87
YK + G+ GI RLMKN+++
Sbjct: 74 YKTVDVGSKSRGIDDFDLRLMKNMRI 99
>sp|Q9SIJ5|RADL2_ARATH Protein RADIALIS-like 2 OS=Arabidopsis thaliana GN=RL2 PE=2 SV=1
Length = 101
Score = 99.8 bits (247), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 50/85 (58%), Positives = 63/85 (74%), Gaps = 2/85 (2%)
Query: 4 EQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYDRLVEDLIFIESAQFPLPN 63
+QNK FERALAVYD+DTPDRW NVARAV GGK+P++ KR YD LV D+ IE+ P P+
Sbjct: 17 KQNKAFERALAVYDQDTPDRWHNVARAV-GGKTPEEAKRQYDLLVRDIESIENGHVPFPD 75
Query: 64 YK-NTGNNCIGILADAPRLMKNLKL 87
YK TGN+ G L D + M+++KL
Sbjct: 76 YKTTTGNSNRGRLRDEEKRMRSMKL 100
>sp|Q58FS3|RAD_ANTMA Transcription factor RADIALIS OS=Antirrhinum majus GN=RAD PE=1
SV=1
Length = 93
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/84 (58%), Positives = 64/84 (76%), Gaps = 5/84 (5%)
Query: 4 EQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYDRLVEDLIFIESAQFPLPN 63
++NK FERALAVYDKDTPDRW NVARAV G++P++VK+HY+ LVED+ +IES + P PN
Sbjct: 14 KENKAFERALAVYDKDTPDRWANVARAV-EGRTPEEVKKHYEILVEDIKYIESGKVPFPN 72
Query: 64 YKNTGNNCIGILADAPRLMKNLKL 87
Y+ TG N + D R +NLK+
Sbjct: 73 YRTTGGN---MKTDEKRF-RNLKI 92
>sp|F4JVB8|RADL1_ARATH Protein RADIALIS-like 1 OS=Arabidopsis thaliana GN=RL1 PE=2 SV=1
Length = 100
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 43/84 (51%), Positives = 62/84 (73%), Gaps = 1/84 (1%)
Query: 4 EQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYDRLVEDLIFIESAQFPLPN 63
+QNK FE+ALA YD+DTP+RWQNVA+ VGG K+ ++VKRHY+ LV+D+ IE+ P PN
Sbjct: 17 KQNKAFEQALATYDQDTPNRWQNVAKVVGG-KTTEEVKRHYELLVQDINSIENGHVPFPN 75
Query: 64 YKNTGNNCIGILADAPRLMKNLKL 87
Y+ +G G L+ + M+N++L
Sbjct: 76 YRTSGGCTNGRLSQEEKRMRNMRL 99
>sp|Q6NNN0|RADL3_ARATH Protein RADIALIS-like 3 OS=Arabidopsis thaliana GN=RL3 PE=2 SV=1
Length = 81
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/67 (62%), Positives = 55/67 (82%), Gaps = 1/67 (1%)
Query: 4 EQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYDRLVEDLIFIESAQFPLPN 63
++NK FERALA YD+DTPDRW NVARAV GGKS ++V+RHY+ L+ D+ IES ++P PN
Sbjct: 15 KENKLFERALATYDQDTPDRWHNVARAV-GGKSAEEVRRHYELLIRDVNDIESGRYPHPN 73
Query: 64 YKNTGNN 70
Y++ GNN
Sbjct: 74 YRSNGNN 80
>sp|Q1G3C4|RADL4_ARATH Protein RADIALIS-like 4 OS=Arabidopsis thaliana GN=RL4 PE=2 SV=1
Length = 77
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 51/63 (80%), Gaps = 1/63 (1%)
Query: 5 QNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYDRLVEDLIFIESAQFPLPNY 64
++K+FE ALA +DKDTPDRWQ +ARAV GGKS ++VKRHY+ L+ D+ IES ++P P Y
Sbjct: 15 EDKQFEMALAKFDKDTPDRWQKIARAV-GGKSTEEVKRHYELLLRDVNDIESGRYPQPRY 73
Query: 65 KNT 67
+NT
Sbjct: 74 RNT 76
>sp|Q8S9H7|DIV_ANTMA Transcription factor DIVARICATA OS=Antirrhinum majus
GN=DIVARICATA PE=2 SV=1
Length = 307
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 29/63 (46%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Query: 5 QNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYDRLVEDLIFIESAQFPLPNY 64
+NK FE ALAV+D++TP+RW+ VA V GK+ DV R Y L +D+ IE+ P+P Y
Sbjct: 30 ENKAFENALAVFDENTPNRWERVAERV-PGKTVGDVMRQYKELEDDVSSIEAGFVPVPGY 88
Query: 65 KNT 67
+
Sbjct: 89 STS 91
>sp|Q7TQ20|DNJC2_RAT DnaJ homolog subfamily C member 2 OS=Rattus norvegicus GN=Dnajc2
PE=2 SV=1
Length = 621
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 4 EQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYDRLVEDLIFIESAQFPLPN 63
E+ K E+AL Y +TP+RW+ +A AV G++ D R Y LVE + ++AQ + N
Sbjct: 557 EEQKLLEQALKTYPVNTPERWEKIAEAV-PGRTKKDCMRRYKELVEMVKAKKAAQEQVLN 615
>sp|P54103|DNJC2_MOUSE DnaJ homolog subfamily C member 2 OS=Mus musculus GN=Dnajc2 PE=1
SV=2
Length = 621
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 4 EQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYDRLVEDLIFIESAQFPLPN 63
E+ K E+AL Y +TP+RW+ +A AV G++ D R Y LVE + ++AQ + N
Sbjct: 557 EEQKLLEQALKTYPVNTPERWEKIAEAV-PGRTKKDCMRRYKELVEMVKAKKAAQEQVLN 615
>sp|Q6P2Y3|DNJC2_XENTR DnaJ homolog subfamily C member 2 OS=Xenopus tropicalis GN=dnajc2
PE=2 SV=2
Length = 620
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 4 EQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYDRLVEDLIFIESAQFPLPN 63
E+ K E+AL Y +TP+RW+ +A AV G D +KR Y LVE + ++AQ + N
Sbjct: 556 EEQKLLEQALKTYPVNTPERWEKIAEAVPGRSKKDCMKR-YKELVEMVKAKKAAQEQVLN 614
>sp|Q99543|DNJC2_HUMAN DnaJ homolog subfamily C member 2 OS=Homo sapiens GN=DNAJC2 PE=1
SV=4
Length = 621
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 4 EQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYDRLVEDLIFIESAQFPLPN 63
E+ K E+AL Y +TP+RW+ +A AV G D +KR Y LVE + ++AQ + N
Sbjct: 557 EEQKLLEQALKTYPVNTPERWEKIAEAVPGRTKKDCMKR-YKELVEMVKAKKAAQEQVLN 615
>sp|Q4R8H2|DNJC2_MACFA DnaJ homolog subfamily C member 2 OS=Macaca fascicularis GN=DNAJC2
PE=2 SV=1
Length = 621
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 4 EQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYDRLVEDLIFIESAQFPLPN 63
E+ K E+AL Y +TP+RW+ +A AV G D +KR Y LVE + ++AQ + N
Sbjct: 557 EEQKLLEQALKTYPVNTPERWEKIAEAVPGRTKKDCMKR-YKELVEMVKAKKAAQEQVLN 615
>sp|Q1RMH9|DNJC2_BOVIN DnaJ homolog subfamily C member 2 OS=Bos taurus GN=DNAJC2 PE=2 SV=1
Length = 621
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 4 EQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYDRLVEDLIFIESAQFPLPN 63
E+ K E+AL Y +TP+RW+ +A AV G D +KR Y LVE + ++AQ + N
Sbjct: 557 EEQKLLEQALKTYPVNTPERWEKIAEAVPGRTKKDCMKR-YKELVEMVKAKKAAQEQVLN 615
>sp|Q6NWJ4|DNJC2_DANRE DnaJ homolog subfamily C member 2 OS=Danio rerio GN=dnajc2 PE=2
SV=1
Length = 618
Score = 36.2 bits (82), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 4 EQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYDRLVEDLIFIESAQ 58
E+ K E+AL Y T +RW+ ++ AV G D +KR Y LVE + ++AQ
Sbjct: 556 EEQKLLEQALKTYPVSTAERWERISEAVPGRSKKDCMKR-YKELVEMIKAKKAAQ 609
>sp|Q96KC8|DNJC1_HUMAN DnaJ homolog subfamily C member 1 OS=Homo sapiens GN=DNAJC1 PE=1
SV=1
Length = 554
Score = 32.3 bits (72), Expect = 0.96, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 5 QNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYDRLVE 49
Q K E AL Y + + DRW +AR V KS +D Y LVE
Sbjct: 501 QQKLLELALQQYPRGSSDRWDKIARCV-PSKSKEDCIARYKLLVE 544
>sp|Q61712|DNJC1_MOUSE DnaJ homolog subfamily C member 1 OS=Mus musculus GN=Dnajc1 PE=1
SV=1
Length = 552
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 5 QNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYDRLVE 49
Q K E AL Y K DRW +A+ V KS +D Y LVE
Sbjct: 499 QQKLLELALQQYPKGASDRWDKIAKCV-PSKSKEDCIARYKLLVE 542
>sp|P34454|YMA9_CAEEL Uncharacterized protein F54F2.9 OS=Caenorhabditis elegans
GN=F54F2.9 PE=4 SV=3
Length = 414
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 5 QNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYDRLVE 49
+ K FE AL Y K T +RW+ ++ + G K+ V + +L E
Sbjct: 361 EQKAFETALQKYPKGTDERWERISEEI-GSKTKKQVMVRFKQLAE 404
>sp|Q54J55|MYBX_DICDI Myb-like protein X OS=Dictyostelium discoideum GN=mybX PE=3 SV=1
Length = 1620
Score = 29.3 bits (64), Expect = 7.1, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 22 DRWQNVARAVGGGKSPDDVKRHYDRLVEDLIFIES--AQFPL 61
D WQ ++ +GG K+P+ H+ RL + F+E + FP+
Sbjct: 947 DNWQEISDYIGGSKTPEQCLTHFIRLPIEDEFLERKISSFPV 988
>sp|P45299|LPOA_HAEIN Penicillin-binding protein activator LpoA OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=lpoA PE=1
SV=1
Length = 575
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Query: 1 MDPEQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYDRLVEDLIFIESAQFP 60
+ P Q ++ LA+ ++ D + V + K+ DV+RH D + + + SA
Sbjct: 129 LSPSQKSRYYETLAIVAENRKDMIEAVKARIEMDKNLTDVQRHQDNIDKTWALLRSANTG 188
Query: 61 -LPNYKNTGNNCIG 73
+ N + GN +G
Sbjct: 189 VINNASDEGNAALG 202
>sp|Q0U6X2|MAK5_PHANO ATP-dependent RNA helicase MAK5 OS=Phaeosphaeria nodorum (strain
SN15 / ATCC MYA-4574 / FGSC 10173) GN=MAK5 PE=3 SV=1
Length = 817
Score = 29.3 bits (64), Expect = 8.3, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 18 KDTPDRWQNVARAVGGGKSPDDVKRHYDRLVEDLIFIESAQFPLPN 63
+DT + Q+ A GG S DDV ++ D ED+ +E P PN
Sbjct: 130 EDTVEATQDEDAASWGGFSDDDVAQNGDEQSEDVQMVEEDAPPTPN 175
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.138 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,718,315
Number of Sequences: 539616
Number of extensions: 1369045
Number of successful extensions: 2974
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2938
Number of HSP's gapped (non-prelim): 27
length of query: 87
length of database: 191,569,459
effective HSP length: 57
effective length of query: 30
effective length of database: 160,811,347
effective search space: 4824340410
effective search space used: 4824340410
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)