Query 034673
Match_columns 87
No_of_seqs 108 out of 367
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 08:21:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034673.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034673hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cjj_A Radialis; plant develop 100.0 1.6E-30 5.4E-35 172.3 8.8 82 1-87 11-92 (93)
2 2cqq_A RSGI RUH-037, DNAJ homo 99.9 1.1E-26 3.6E-31 147.6 6.0 62 1-65 11-72 (72)
3 1wgx_A KIAA1903 protein; MYB D 99.9 2.2E-22 7.7E-27 128.9 4.5 50 2-52 12-61 (73)
4 4eef_G F-HB80.4, designed hema 99.8 3.7E-23 1.3E-27 133.4 -1.1 44 2-46 24-67 (74)
5 2cqr_A RSGI RUH-043, DNAJ homo 99.8 1.9E-19 6.6E-24 114.4 3.7 51 1-52 21-71 (73)
6 2yum_A ZZZ3 protein, zinc fing 99.4 2.3E-13 7.8E-18 84.6 6.2 60 1-65 11-73 (75)
7 2yus_A SWI/SNF-related matrix- 99.4 1.2E-13 4E-18 88.4 1.2 55 1-60 21-76 (79)
8 2eqr_A N-COR1, N-COR, nuclear 99.1 1.4E-10 4.6E-15 70.3 5.4 41 1-46 15-55 (61)
9 2din_A Cell division cycle 5-l 99.1 2.2E-10 7.7E-15 69.6 5.4 52 1-58 12-63 (66)
10 1x41_A Transcriptional adaptor 99.0 1.2E-09 4E-14 65.6 5.4 43 1-47 11-53 (60)
11 2cu7_A KIAA1915 protein; nucle 98.9 2.7E-09 9.1E-14 66.0 6.1 46 1-51 12-57 (72)
12 2yqk_A Arginine-glutamic acid 98.9 2.3E-09 7.9E-14 65.5 5.4 40 1-45 12-52 (63)
13 2crg_A Metastasis associated p 98.9 3.5E-09 1.2E-13 66.0 5.5 40 1-45 11-51 (70)
14 2elk_A SPCC24B10.08C protein; 98.8 1.1E-08 3.9E-13 61.1 6.4 44 1-47 12-55 (58)
15 1guu_A C-MYB, MYB proto-oncoge 98.8 1.4E-08 4.9E-13 58.7 5.4 44 1-48 6-49 (52)
16 2d9a_A B-MYB, MYB-related prot 98.7 3.1E-08 1.1E-12 58.9 4.8 44 1-48 11-54 (60)
17 1gvd_A MYB proto-oncogene prot 98.6 2.9E-08 1E-12 57.5 3.9 43 1-47 6-48 (52)
18 2k9n_A MYB24; R2R3 domain, DNA 98.6 9.5E-08 3.3E-12 62.3 5.8 47 1-52 56-102 (107)
19 1gv2_A C-MYB, MYB proto-oncoge 98.5 7.8E-08 2.7E-12 62.1 4.4 43 1-48 59-101 (105)
20 2iw5_B Protein corest, REST co 98.5 1.3E-07 4.5E-12 71.4 5.5 56 1-61 136-197 (235)
21 2dim_A Cell division cycle 5-l 98.5 2.5E-07 8.4E-12 56.5 5.5 43 1-47 12-54 (70)
22 4a69_C Nuclear receptor corepr 98.4 3.8E-07 1.3E-11 59.6 5.5 40 1-45 46-85 (94)
23 1ofc_X ISWI protein; nuclear p 98.4 2.9E-07 1E-11 71.3 5.2 57 1-61 113-179 (304)
24 1h8a_C AMV V-MYB, MYB transfor 98.4 1.8E-07 6.2E-12 62.5 3.2 43 1-48 82-124 (128)
25 3osg_A MYB21; transcription-DN 98.4 5.4E-07 1.9E-11 60.3 5.4 46 1-51 65-110 (126)
26 2ltp_A Nuclear receptor corepr 97.7 6.4E-08 2.2E-12 62.3 0.0 44 1-49 19-62 (89)
27 2k9n_A MYB24; R2R3 domain, DNA 98.3 9.3E-07 3.2E-11 57.6 5.0 43 1-47 4-46 (107)
28 1gv2_A C-MYB, MYB proto-oncoge 98.3 6.8E-07 2.3E-11 57.6 3.9 43 1-47 7-49 (105)
29 1h89_C C-MYB, MYB proto-oncoge 98.2 6E-07 2E-11 61.8 3.4 43 1-48 113-155 (159)
30 1w0t_A Telomeric repeat bindin 98.2 3.1E-06 1.1E-10 49.2 5.7 45 1-48 5-50 (53)
31 1h8a_C AMV V-MYB, MYB transfor 98.2 1.7E-06 5.8E-11 57.7 4.9 43 1-47 30-72 (128)
32 3osg_A MYB21; transcription-DN 98.2 1.8E-06 6.1E-11 57.8 5.0 42 1-47 14-55 (126)
33 3sjm_A Telomeric repeat-bindin 98.2 5.1E-06 1.7E-10 50.7 6.5 45 1-48 14-59 (64)
34 2llk_A Cyclin-D-binding MYB-li 98.0 9.3E-06 3.2E-10 51.1 5.0 44 1-50 26-69 (73)
35 1ity_A TRF1; helix-turn-helix, 98.0 2.4E-05 8.1E-10 47.5 6.7 46 1-49 13-59 (69)
36 3zqc_A MYB3; transcription-DNA 98.0 4.4E-06 1.5E-10 56.1 3.5 45 1-50 57-101 (131)
37 3zqc_A MYB3; transcription-DNA 98.0 3.7E-06 1.3E-10 56.5 2.7 43 1-47 5-47 (131)
38 1h89_C C-MYB, MYB proto-oncoge 97.9 1.3E-05 4.6E-10 54.9 4.3 43 1-47 61-103 (159)
39 2xag_B REST corepressor 1; ami 97.7 3.7E-05 1.3E-09 62.8 5.3 53 1-58 383-441 (482)
40 2ckx_A NGTRF1, telomere bindin 97.4 0.00044 1.5E-08 44.2 6.2 45 1-49 3-51 (83)
41 1ug2_A 2610100B20RIK gene prod 97.4 0.00084 2.9E-08 44.7 7.2 49 2-52 37-85 (95)
42 2xag_B REST corepressor 1; ami 97.1 7E-05 2.4E-09 61.1 0.0 39 1-44 192-230 (482)
43 4b4c_A Chromodomain-helicase-D 96.9 0.002 6.8E-08 45.3 6.0 49 1-51 10-60 (211)
44 1ign_A Protein (RAP1); RAP1,ye 96.9 0.00075 2.5E-08 51.3 3.8 49 1-50 11-61 (246)
45 2aje_A Telomere repeat-binding 96.6 0.0032 1.1E-07 42.0 5.0 45 1-49 16-64 (105)
46 2roh_A RTBP1, telomere binding 96.6 0.0064 2.2E-07 41.5 6.4 45 1-49 34-82 (122)
47 2juh_A Telomere binding protei 96.4 0.0055 1.9E-07 41.8 5.0 46 1-50 20-69 (121)
48 1x58_A Hypothetical protein 49 96.1 0.0079 2.7E-07 37.1 4.3 43 1-48 11-56 (62)
49 2lr8_A CAsp8-associated protei 95.1 0.00099 3.4E-08 42.3 0.0 48 2-52 18-65 (70)
50 1fex_A TRF2-interacting telome 95.7 0.027 9.3E-07 33.6 5.4 45 1-46 5-55 (59)
51 3hm5_A DNA methyltransferase 1 94.4 0.23 7.7E-06 32.5 7.3 49 2-55 34-87 (93)
52 2y9y_A Imitation switch protei 92.3 0.21 7.2E-06 39.6 5.3 44 2-48 127-170 (374)
53 1ofc_X ISWI protein; nuclear p 91.3 0.47 1.6E-05 36.5 6.2 52 1-52 215-277 (304)
54 2xb0_X Chromo domain-containin 89.9 0.73 2.5E-05 34.8 6.0 48 1-50 6-55 (270)
55 1ign_A Protein (RAP1); RAP1,ye 87.6 1.5 5E-05 33.2 6.2 42 22-64 172-223 (246)
56 1irz_A ARR10-B; helix-turn-hel 81.7 5.2 0.00018 24.3 5.8 47 2-50 11-59 (64)
57 2ebi_A DNA binding protein GT- 80.9 4.6 0.00016 24.5 5.4 56 2-57 8-72 (86)
58 2y9y_A Imitation switch protei 72.9 7.3 0.00025 30.8 5.7 51 1-51 231-292 (374)
59 2cxy_A BAF250B subunit, HBAF25 72.6 9.9 0.00034 24.9 5.6 43 22-64 73-119 (125)
60 4iej_A DNA methyltransferase 1 71.6 18 0.00061 23.5 7.5 35 21-55 49-87 (93)
61 1hbk_A ACBP, acyl-COA binding 65.1 6 0.0002 24.8 3.1 21 31-52 64-84 (89)
62 2pjp_A Selenocysteine-specific 63.7 25 0.00086 22.2 6.2 45 1-48 1-45 (121)
63 2jxj_A Histone demethylase jar 63.4 5.4 0.00018 24.7 2.6 36 22-57 58-96 (96)
64 2lm1_A Lysine-specific demethy 62.9 19 0.00065 22.6 5.3 37 22-58 66-105 (107)
65 2cb8_A Acyl-COA-binding protei 62.1 8.6 0.00029 24.0 3.4 22 31-53 62-83 (87)
66 1st7_A ACBP, acyl-COA-binding 60.1 6.3 0.00022 24.5 2.5 22 31-53 61-82 (86)
67 2eqy_A RBP2 like, jumonji, at 59.4 33 0.0011 22.3 6.3 37 22-58 64-103 (122)
68 3epy_A Acyl-COA-binding domain 59.4 9.4 0.00032 24.0 3.3 22 31-53 64-85 (89)
69 2lbb_A Acyl COA binding protei 58.6 9 0.00031 24.7 3.1 28 23-52 64-91 (96)
70 3fp5_A Acyl-COA binding protei 58.0 13 0.00045 24.2 3.9 23 31-54 68-90 (106)
71 2cop_A Acyl-coenzyme A binding 56.5 10 0.00034 24.8 3.1 28 23-52 61-88 (109)
72 2ys8_A RAB-related GTP-binding 53.9 34 0.0012 20.7 5.7 45 1-52 12-56 (90)
73 2kk0_A AT-rich interactive dom 53.7 19 0.00064 24.2 4.2 39 22-60 86-128 (145)
74 1fs1_B SKP1, cyclin A/CDK2-ass 52.9 8.5 0.00029 25.4 2.4 44 5-50 91-138 (141)
75 2cqu_A Peroxisomal D3,D2-enoyl 52.5 19 0.00065 23.8 4.0 21 31-52 76-96 (116)
76 2o8x_A Probable RNA polymerase 52.1 16 0.00056 19.9 3.2 29 22-52 32-60 (70)
77 1kkx_A Transcription regulator 51.8 34 0.0012 22.4 5.2 32 21-53 69-100 (123)
78 1c20_A DEAD ringer protein; DN 51.4 34 0.0012 22.3 5.1 38 22-59 74-115 (128)
79 1hx1_B BAG-1, BAG-family molec 50.2 11 0.00039 25.4 2.6 37 23-62 9-45 (114)
80 2dmu_A Homeobox protein goosec 50.0 34 0.0012 19.5 5.8 43 1-45 14-56 (70)
81 1ig7_A Homeotic protein MSX-1; 49.7 30 0.001 18.9 6.0 43 1-45 7-49 (58)
82 2hdd_A Protein (engrailed home 49.1 33 0.0011 19.0 5.8 43 1-45 10-52 (61)
83 2da7_A Zinc finger homeobox pr 48.7 45 0.0016 20.6 5.3 43 4-48 15-57 (71)
84 2ecb_A Zinc fingers and homeob 48.2 47 0.0016 20.7 8.4 54 1-56 18-71 (89)
85 3i4p_A Transcriptional regulat 48.0 26 0.0009 22.9 4.2 30 18-49 14-43 (162)
86 2jrz_A Histone demethylase jar 47.6 19 0.00064 23.3 3.4 36 22-58 62-101 (117)
87 2dmq_A LIM/homeobox protein LH 47.4 40 0.0014 19.6 5.9 44 1-46 14-57 (80)
88 2wh5_A Acyl-COA-binding domain 47.4 26 0.0009 22.7 4.0 29 23-53 65-93 (106)
89 1jgg_A Segmentation protein EV 47.2 35 0.0012 18.9 5.8 43 1-45 8-50 (60)
90 3v7d_A Suppressor of kinetocho 47.0 15 0.0005 25.1 2.9 41 4-45 102-146 (169)
91 2da2_A Alpha-fetoprotein enhan 45.6 40 0.0014 19.1 5.9 43 1-45 14-56 (70)
92 1bw5_A ISL-1HD, insulin gene e 45.3 40 0.0014 19.0 5.8 43 1-45 10-52 (66)
93 1qgp_A Protein (double strande 45.2 46 0.0016 19.7 5.1 45 3-49 13-57 (77)
94 2cyy_A Putative HTH-type trans 45.0 58 0.002 20.7 6.7 42 2-49 6-47 (151)
95 2e1o_A Homeobox protein PRH; D 44.3 43 0.0015 19.1 5.9 43 1-45 14-56 (70)
96 2cra_A Homeobox protein HOX-B1 44.0 44 0.0015 19.1 5.9 43 1-45 14-56 (70)
97 2da1_A Alpha-fetoprotein enhan 43.4 44 0.0015 18.9 6.4 43 1-45 14-56 (70)
98 1i6z_A BAG-family molecular ch 42.8 17 0.00058 25.1 2.6 35 23-60 19-53 (135)
99 2dms_A Homeobox protein OTX2; 42.6 50 0.0017 19.3 5.9 52 1-54 14-65 (80)
100 1i1g_A Transcriptional regulat 42.5 59 0.002 20.1 6.0 42 2-49 3-44 (141)
101 2p1m_A SKP1-like protein 1A; F 42.3 14 0.00048 24.8 2.1 20 25-45 119-138 (160)
102 2dbb_A Putative HTH-type trans 42.3 63 0.0022 20.4 6.8 41 3-49 9-49 (151)
103 1akh_A Protein (mating-type pr 42.2 43 0.0015 18.4 5.8 43 1-45 12-54 (61)
104 1fjl_A Paired protein; DNA-bin 42.2 51 0.0017 19.3 5.8 43 1-45 25-67 (81)
105 2da3_A Alpha-fetoprotein enhan 42.2 44 0.0015 19.3 4.2 43 1-45 24-66 (80)
106 3flv_A Acyl-COA-binding domain 41.4 32 0.0011 23.0 3.8 21 31-52 88-108 (119)
107 2li6_A SWI/SNF chromatin-remod 41.3 20 0.00067 23.1 2.7 31 22-53 71-101 (116)
108 2dmt_A Homeobox protein BARH-l 41.2 53 0.0018 19.2 5.8 43 1-45 24-66 (80)
109 2l9r_A Homeobox protein NKX-3. 40.7 55 0.0019 19.3 6.0 43 1-45 11-53 (69)
110 2k40_A Homeobox expressed in E 40.5 49 0.0017 18.6 5.7 44 1-46 8-51 (67)
111 3qf7_D MRE11; ABC-ATPase, ATPa 40.4 26 0.00088 20.3 2.8 25 35-59 22-46 (50)
112 1qbj_A Protein (double-strande 39.9 54 0.0019 19.8 4.5 43 5-50 12-54 (81)
113 2cue_A Paired box protein PAX6 39.9 56 0.0019 19.1 5.8 43 1-45 14-56 (80)
114 1zq3_P PRD-4, homeotic bicoid 38.8 54 0.0018 18.6 5.7 43 1-45 9-51 (68)
115 1yz8_P Pituitary homeobox 2; D 38.1 55 0.0019 18.5 5.0 43 1-45 10-52 (68)
116 3a02_A Homeobox protein arista 38.0 51 0.0018 18.1 5.8 43 1-45 6-48 (60)
117 2ond_A Cleavage stimulation fa 37.9 35 0.0012 23.3 3.7 43 6-48 84-126 (308)
118 2ast_A S-phase kinase-associat 37.8 20 0.00067 23.9 2.3 40 5-45 96-139 (159)
119 2l7z_A Homeobox protein HOX-A1 37.7 59 0.002 18.7 5.0 43 1-45 14-56 (73)
120 2djn_A Homeobox protein DLX-5; 35.9 61 0.0021 18.4 5.7 43 1-45 14-56 (70)
121 2ecc_A Homeobox and leucine zi 34.7 78 0.0027 19.3 5.9 45 1-47 10-54 (76)
122 2cg4_A Regulatory protein ASNC 34.6 88 0.003 19.8 6.6 42 2-49 7-48 (152)
123 2h1k_A IPF-1, pancreatic and d 34.4 62 0.0021 18.0 5.8 43 1-45 10-52 (63)
124 1du6_A PBX1, homeobox protein 33.5 64 0.0022 17.9 4.6 43 1-45 10-55 (64)
125 1jmt_A Splicing factor U2AF 35 33.2 30 0.001 21.2 2.5 24 36-59 28-54 (104)
126 2opo_A Polcalcin CHE A 3; calc 33.0 64 0.0022 17.7 5.6 45 1-46 5-54 (86)
127 2p5v_A Transcriptional regulat 32.7 99 0.0034 19.8 6.5 42 2-49 9-50 (162)
128 2dmn_A Homeobox protein TGIF2L 32.6 80 0.0027 18.8 5.9 43 1-45 14-59 (83)
129 3kw6_A 26S protease regulatory 31.5 69 0.0024 18.3 3.8 40 6-46 9-48 (78)
130 3k2z_A LEXA repressor; winged 31.0 56 0.0019 21.9 3.8 48 1-50 3-51 (196)
131 2xev_A YBGF; tetratricopeptide 30.5 75 0.0026 17.8 4.3 41 8-48 61-103 (129)
132 2ovk_B RLC, myosin regulatory 30.3 91 0.0031 18.7 4.7 56 1-64 10-70 (153)
133 2c35_A Human RPB4, DNA-directe 30.1 99 0.0034 20.9 4.9 43 2-47 86-128 (152)
134 1nk2_P Homeobox protein VND; h 30.0 84 0.0029 18.2 6.0 44 1-46 16-59 (77)
135 2da4_A Hypothetical protein DK 29.9 66 0.0023 18.8 3.6 45 1-47 15-63 (80)
136 3ajb_B Peroxisomal biogenesis 29.6 15 0.00051 21.5 0.5 17 4-20 22-38 (49)
137 1ig6_A MRF-2, modulator recogn 29.6 19 0.00065 22.7 1.1 42 22-63 55-102 (107)
138 2lmt_A Calmodulin-related prot 29.5 99 0.0034 18.8 5.1 46 1-46 4-54 (148)
139 3ejb_A Acyl carrier protein; p 29.5 10 0.00036 23.3 -0.2 38 22-59 5-42 (97)
140 2joj_A Centrin protein; N-term 29.2 69 0.0024 17.0 5.3 43 1-43 1-48 (77)
141 2e1c_A Putative HTH-type trans 29.0 1.3E+02 0.0044 19.9 6.1 38 7-49 30-67 (171)
142 2pn6_A ST1022, 150AA long hypo 29.0 91 0.0031 19.6 4.4 42 2-49 2-43 (150)
143 2dn0_A Zinc fingers and homeob 28.4 90 0.0031 18.0 6.4 44 1-46 15-58 (76)
144 4aez_C MAD3, mitotic spindle c 28.0 1.3E+02 0.0044 21.9 5.5 33 4-36 53-91 (223)
145 1c07_A Protein (epidermal grow 27.9 34 0.0012 20.2 2.0 42 1-44 4-50 (95)
146 3aji_B S6C, proteasome (prosom 26.1 52 0.0018 19.0 2.6 39 6-45 7-45 (83)
147 1k61_A Mating-type protein alp 26.0 87 0.003 17.1 5.9 43 1-45 5-50 (60)
148 2qsa_A DNAJ homolog DNJ-2; J-d 25.8 22 0.00077 22.1 0.9 13 36-48 29-41 (109)
149 2dn9_A DNAJ homolog subfamily 25.8 91 0.0031 17.9 3.6 28 21-50 7-34 (79)
150 1ucr_A Protein DSVD; dissimila 25.4 1.1E+02 0.0037 19.3 4.0 46 3-49 3-48 (78)
151 1lva_A Selenocysteine-specific 24.7 92 0.0032 22.1 4.1 46 1-48 135-182 (258)
152 2l6j_A TPR repeat-containing p 24.6 91 0.0031 16.8 3.7 40 7-47 25-64 (111)
153 2ej7_A HCG3 gene; HCG3 protein 24.5 64 0.0022 18.7 2.8 19 31-49 17-35 (82)
154 1vp7_A Exodeoxyribonuclease VI 24.4 47 0.0016 21.6 2.3 21 41-61 33-53 (100)
155 1txl_A Metal-binding protein Y 24.2 70 0.0024 23.5 3.4 33 21-54 74-107 (215)
156 1d2z_B Death domain of tube; s 24.2 17 0.00058 25.6 0.1 37 20-56 28-76 (153)
157 2guz_B Mitochondrial import in 24.2 53 0.0018 19.3 2.3 16 35-50 19-34 (65)
158 2guz_A Mitochondrial import in 24.2 67 0.0023 18.5 2.8 21 31-51 22-43 (71)
159 1go3_F DNA-directed RNA polyme 24.0 1.4E+02 0.005 18.9 5.0 39 4-45 50-88 (107)
160 3top_A Maltase-glucoamylase, i 23.9 74 0.0025 27.6 4.0 38 34-79 268-306 (908)
161 2ooe_A Cleavage stimulation fa 23.6 1.5E+02 0.0052 21.7 5.3 42 7-49 412-453 (530)
162 3egq_A TETR family transcripti 23.5 1.3E+02 0.0044 18.2 4.6 43 1-45 2-46 (170)
163 1iqq_A S3-RNAse; japanese PEAR 23.4 84 0.0029 21.4 3.6 40 4-43 98-141 (200)
164 1x2n_A Homeobox protein pknox1 23.4 1.1E+02 0.0038 17.3 5.8 43 1-45 14-59 (73)
165 1fi6_A EH domain protein REPS1 23.2 1.2E+02 0.004 17.5 5.9 41 1-43 3-48 (92)
166 2och_A Hypothetical protein DN 23.2 72 0.0025 18.2 2.8 29 21-51 8-36 (73)
167 1puf_A HOX-1.7, homeobox prote 23.2 1.2E+02 0.004 17.5 5.8 43 1-45 20-62 (77)
168 1ich_A TNF-1, tumor necrosis f 22.6 78 0.0027 20.8 3.2 38 19-57 11-48 (112)
169 2cug_A Mkiaa0962 protein; DNAJ 22.5 95 0.0033 18.4 3.4 19 31-49 25-43 (88)
170 1faf_A Large T antigen; J doma 22.5 70 0.0024 18.9 2.7 16 35-50 25-40 (79)
171 2kc7_A BFR218_protein; tetratr 22.4 82 0.0028 17.0 2.9 41 7-48 21-62 (99)
172 1hdj_A Human HSP40, HDJ-1; mol 22.3 76 0.0026 18.2 2.8 20 31-50 11-30 (77)
173 3h3g_B Parathyroid hormone-rel 22.3 87 0.003 15.7 2.9 18 34-51 1-20 (24)
174 2ctp_A DNAJ homolog subfamily 22.1 77 0.0026 18.2 2.8 19 31-49 15-33 (78)
175 1b72_B Protein (PBX1); homeodo 22.0 1.3E+02 0.0044 17.6 5.7 43 1-45 8-53 (87)
176 1yx7_A Calsensin, LAN3-6 antig 22.0 7.7 0.00026 21.5 -1.7 45 1-45 1-52 (83)
177 1puf_B PRE-B-cell leukemia tra 21.9 1.2E+02 0.0041 17.2 5.7 43 1-45 8-53 (73)
178 2yhc_A BAMD, UPF0169 lipoprote 21.9 98 0.0034 19.9 3.6 42 7-48 168-211 (225)
179 1ais_B TFB TFIIB, protein (tra 21.7 1.1E+02 0.0036 20.4 3.8 27 24-52 168-194 (200)
180 2a9i_A IRAK-4, interleukin-1 r 21.6 65 0.0022 20.9 2.6 12 21-32 29-40 (113)
181 1oyi_A Double-stranded RNA-bin 21.5 1.1E+02 0.0039 18.9 3.6 27 22-50 31-57 (82)
182 1wi3_A DNA-binding protein SAT 21.5 1.5E+02 0.0052 18.2 5.3 44 1-46 14-58 (71)
183 1oeg_A Apolipoprotein E; siali 21.5 43 0.0015 17.1 1.3 16 37-52 3-18 (26)
184 2kt0_A Nanog, homeobox protein 21.3 1.3E+02 0.0045 17.4 5.9 43 1-45 29-71 (84)
185 2cfx_A HTH-type transcriptiona 21.3 1.6E+02 0.0055 18.4 6.6 42 2-49 4-45 (144)
186 1lnl_A Hemocyanin; deoxygenate 21.2 55 0.0019 25.1 2.5 30 1-30 13-43 (408)
187 3d3z_A Actibind; RNAse, hydrol 21.2 1.1E+02 0.0037 22.0 4.0 43 3-45 134-179 (247)
188 2ctr_A DNAJ homolog subfamily 21.0 81 0.0028 18.7 2.8 27 22-50 8-34 (88)
189 3k9i_A BH0479 protein; putativ 20.7 1.2E+02 0.0041 17.2 3.5 43 6-49 47-89 (117)
190 1wh4_A IRAK4, interleukin-1 re 20.7 81 0.0028 20.8 2.9 13 20-32 35-47 (127)
191 3gyz_A Chaperone protein IPGC; 20.2 1.5E+02 0.0052 18.6 4.2 39 8-47 58-96 (151)
192 3a03_A T-cell leukemia homeobo 20.2 1.2E+02 0.004 16.4 5.8 43 1-45 4-46 (56)
193 1bq0_A DNAJ, HSP40; chaperone, 20.2 81 0.0028 19.3 2.7 16 34-49 14-29 (103)
No 1
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.97 E-value=1.6e-30 Score=172.34 Aligned_cols=82 Identities=57% Similarity=1.038 Sum_probs=58.8
Q ss_pred CCHHHHHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCccccCChHH
Q 034673 1 MDPEQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYDRLVEDLIFIESAQFPLPNYKNTGNNCIGILADAPR 80 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~~LveDV~~IEsg~v~~P~y~~~~~~~~~~~~~~~~ 80 (87)
.|.+||++||+||+.|++++|+||++||++|| |||..||++||..|++||..||+|+||+|+|.+.+ ++..++++
T Consensus 11 WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp-GRT~~q~k~ry~~l~~dv~~iesg~vp~P~y~~~~----~~~~~~~~ 85 (93)
T 2cjj_A 11 WSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEILVEDIKYIESGKVPFPNYRTTG----GNMKTDEK 85 (93)
T ss_dssp CCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHHHHHHHHHHHHSSCCC-------------------
T ss_pred CCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC----CCcccHHH
Confidence 48999999999999999999999999999999 89999999999999999999999999999998653 56778889
Q ss_pred HhhccCC
Q 034673 81 LMKNLKL 87 (87)
Q Consensus 81 ~~~~~~~ 87 (87)
||++|+|
T Consensus 86 ~~~~~~~ 92 (93)
T 2cjj_A 86 RFRNLKI 92 (93)
T ss_dssp -------
T ss_pred HHhcccC
Confidence 9999986
No 2
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.93 E-value=1.1e-26 Score=147.63 Aligned_cols=62 Identities=21% Similarity=0.416 Sum_probs=58.7
Q ss_pred CCHHHHHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCCCCC
Q 034673 1 MDPEQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYDRLVEDLIFIESAQFPLPNYK 65 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~~LveDV~~IEsg~v~~P~y~ 65 (87)
.|.+|+|+||+||+.||+++|+||++||+++ |||++||++||+.|++|+ .||+|+||+|+|.
T Consensus 11 WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l--gRt~~eV~~~y~~L~~d~-~~~~G~vp~P~~~ 72 (72)
T 2cqq_A 11 WTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL--GRSVTDVTTKAKQLKDSV-TCSPGMVSGPSSG 72 (72)
T ss_dssp CCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH--TSCHHHHHHHHHHHHHSC-CCCSCCCSCSCCC
T ss_pred CCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh--CCCHHHHHHHHHHHHHhc-CccCCCCCCCCCC
Confidence 3899999999999999999999999999996 599999999999999996 6899999999984
No 3
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.86 E-value=2.2e-22 Score=128.88 Aligned_cols=50 Identities=30% Similarity=0.482 Sum_probs=46.8
Q ss_pred CHHHHHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Q 034673 2 DPEQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYDRLVEDLI 52 (87)
Q Consensus 2 T~eenK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~~LveDV~ 52 (87)
|++|||+||+||+.||+++|+||++||++|| |||++||++||+.|.++..
T Consensus 12 T~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~-gKT~eE~~~hY~~l~~~~~ 61 (73)
T 1wgx_A 12 NEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPRGKG 61 (73)
T ss_dssp CHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSSSSC
T ss_pred CHHHHHHHHHHHHHCCCCCccHHHHHHHHcC-CCCHHHHHHHHHHHHhccc
Confidence 8999999999999999999999999999999 8999999999999965543
No 4
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=99.85 E-value=3.7e-23 Score=133.38 Aligned_cols=44 Identities=48% Similarity=0.869 Sum_probs=42.1
Q ss_pred CHHHHHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHH
Q 034673 2 DPEQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYDR 46 (87)
Q Consensus 2 T~eenK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~~ 46 (87)
|++|||+||+||++||+++|+||++||++|| |||++||++||+.
T Consensus 24 T~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp-GKT~eEVk~hY~~ 67 (74)
T 4eef_G 24 KFSENIAFEIALSFTNKDTPDRWKKVAQYVK-GRTPEEVKKHYEL 67 (74)
T ss_dssp CTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC-SSCHHHHHGGGC-
T ss_pred CHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC-CCCHHHHHHHHHH
Confidence 7899999999999999999999999999999 8999999999974
No 5
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.76 E-value=1.9e-19 Score=114.45 Aligned_cols=51 Identities=33% Similarity=0.492 Sum_probs=49.0
Q ss_pred CCHHHHHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Q 034673 1 MDPEQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYDRLVEDLI 52 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~~LveDV~ 52 (87)
.|.+||++|++||+.|++++|+||.+||++|| |||..+|+.||..|++||.
T Consensus 21 WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vp-GRT~~qcr~Ry~~L~~d~~ 71 (73)
T 2cqr_A 21 WTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKLLVSGPS 71 (73)
T ss_dssp CCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHHHHSSCC
T ss_pred CCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHHccc
Confidence 48999999999999999999999999999999 9999999999999999985
No 6
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=2.3e-13 Score=84.62 Aligned_cols=60 Identities=22% Similarity=0.461 Sum_probs=50.4
Q ss_pred CCHHHHHHHHHHHhhcCCCC--ChHHHHHHHHcCCCCCHHHHHHHH-HHHHHHHHHHHhCCCCCCCCC
Q 034673 1 MDPEQNKKFERALAVYDKDT--PDRWQNVARAVGGGKSPDDVKRHY-DRLVEDLIFIESAQFPLPNYK 65 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~t--pdRWekIA~~VpgGKS~~evk~hY-~~LveDV~~IEsg~v~~P~y~ 65 (87)
.|.+|+++|+.|++.|+.++ +.+|.+||+.|| |||..+|+.|| +.|... +..| +++|++.
T Consensus 11 WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~-~Rt~~qcr~r~~~~l~~~---~k~g-~~~pg~~ 73 (75)
T 2yum_A 11 WTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG-NRTAKQVASQVQKYFIKL---TKAG-IPVSGPS 73 (75)
T ss_dssp CCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS-SSCHHHHHHHHHHHHGGG---STTC-SCCCCSC
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC-CCCHHHHHHHHHHHHHHH---HhcC-CCCCCCC
Confidence 48999999999999999776 489999999999 89999999999 455433 3456 6889874
No 7
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.35 E-value=1.2e-13 Score=88.39 Aligned_cols=55 Identities=29% Similarity=0.514 Sum_probs=50.2
Q ss_pred CCHHHHHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHH-HHHHHHHHhCCCC
Q 034673 1 MDPEQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYDRL-VEDLIFIESAQFP 60 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~~L-veDV~~IEsg~v~ 60 (87)
.|.+|+++|..|+..|+ .+|.+||..|| |||..+|+.||..| ++|+..+|+|--|
T Consensus 21 WT~eEd~~Ll~~v~~~G----~~W~~IA~~v~-~RT~~qcr~r~~~~~i~d~~~~~~~~~p 76 (79)
T 2yus_A 21 WTEQETLLLLEALEMYK----DDWNKVSEHVG-SRTQDECILHFLRLPIEDPYLENSDSGP 76 (79)
T ss_dssp CCHHHHHHHHHHHHHSS----SCHHHHHHHHS-SCCHHHHHHHHTTSCCCCSSCCCCCCCS
T ss_pred cCHHHHHHHHHHHHHhC----CCHHHHHHHcC-CCCHHHHHHHHHHhcccccccccCCCCC
Confidence 48999999999999999 57999999999 89999999999998 9999888887554
No 8
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=1.4e-10 Score=70.31 Aligned_cols=41 Identities=17% Similarity=0.125 Sum_probs=37.5
Q ss_pred CCHHHHHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHH
Q 034673 1 MDPEQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYDR 46 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~~ 46 (87)
.|.+|+++|+.||+.|++ +|.+||+.|| |||..+|+++|-.
T Consensus 15 WT~eE~~~F~~~~~~~gk----~w~~Ia~~l~-~rt~~~~v~~Yy~ 55 (61)
T 2eqr_A 15 WTDHEKEIFKDKFIQHPK----NFGLIASYLE-RKSVPDCVLYYYL 55 (61)
T ss_dssp CCHHHHHHHHHHHHHSTT----CHHHHHHHCT-TSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCC----CHHHHHHHcC-CCCHHHHHHHHHH
Confidence 489999999999999974 5999999999 9999999999953
No 9
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=2.2e-10 Score=69.57 Aligned_cols=52 Identities=17% Similarity=0.377 Sum_probs=47.7
Q ss_pred CCHHHHHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhCC
Q 034673 1 MDPEQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYDRLVEDLIFIESAQ 58 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~~LveDV~~IEsg~ 58 (87)
.|.+|+++|..+...|+. +|.+||. +| |+|..+|+.||..++.....+|+|.
T Consensus 12 WT~eED~~L~~~~~~~g~----~W~~Ia~-~~-gRt~~qcr~Rw~~~l~~~~~~~~~~ 63 (66)
T 2din_A 12 WSREEEEKLLHLAKLMPT----QWRTIAP-II-GRTAAQCLEHYEFLLDKAAQRDSGP 63 (66)
T ss_dssp CCHHHHHHHHHHHHHCTT----CHHHHHH-HH-SSCHHHHHHHHHHHHHHHHHSSSCC
T ss_pred CCHHHHHHHHHHHHHcCC----CHHHHhc-cc-CcCHHHHHHHHHHHhChHhcCCCCC
Confidence 489999999999888874 7999999 99 8999999999999999999999874
No 10
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.96 E-value=1.2e-09 Score=65.61 Aligned_cols=43 Identities=19% Similarity=0.382 Sum_probs=39.0
Q ss_pred CCHHHHHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHH
Q 034673 1 MDPEQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYDRL 47 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~~L 47 (87)
.|.+|+++|..|+..|.. .+|.+||..|| |||..+|+.||...
T Consensus 11 WT~eED~~L~~~v~~~G~---~~W~~Ia~~~~-~Rt~~qcr~r~~~~ 53 (60)
T 1x41_A 11 WTAQEEMALLEAVMDCGF---GNWQDVANQMC-TKTKEECEKHYMKY 53 (60)
T ss_dssp SCHHHHHHHHHHHHHTCT---TCHHHHHHHHT-TSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCc---CcHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 489999999999999975 46999999999 89999999999855
No 11
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.91 E-value=2.7e-09 Score=65.96 Aligned_cols=46 Identities=22% Similarity=0.481 Sum_probs=41.7
Q ss_pred CCHHHHHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Q 034673 1 MDPEQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYDRLVEDL 51 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~~LveDV 51 (87)
.|.+|+.+|..++..|.. +|..||..|| |+|..+|+.||..+....
T Consensus 12 WT~eEd~~l~~~~~~~G~----~W~~Ia~~~~-~Rt~~q~k~r~~~~l~~~ 57 (72)
T 2cu7_A 12 WTIEEKELFEQGLAKFGR----RWTKISKLIG-SRTVLQVKSYARQYFKNK 57 (72)
T ss_dssp CCHHHHHHHHHHHHHTCS----CHHHHHHHHS-SSCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCc----CHHHHHHHcC-CCCHHHHHHHHHHHHHHH
Confidence 589999999999999987 7999999999 999999999999776543
No 12
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.90 E-value=2.3e-09 Score=65.48 Aligned_cols=40 Identities=18% Similarity=0.390 Sum_probs=37.2
Q ss_pred CCHHHHHHHHHHHhhcCCCCChHHHHHHH-HcCCCCCHHHHHHHHH
Q 034673 1 MDPEQNKKFERALAVYDKDTPDRWQNVAR-AVGGGKSPDDVKRHYD 45 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~tpdRWekIA~-~VpgGKS~~evk~hY~ 45 (87)
.|.+|.++||.||+.|+++ |.+||. .|| +||+.||.++|=
T Consensus 12 WT~eE~~~Fe~~l~~yGKd----f~~I~~~~v~-~Kt~~~~v~fYY 52 (63)
T 2yqk_A 12 WTEDEVKRFVKGLRQYGKN----FFRIRKELLP-NKETGELITFYY 52 (63)
T ss_dssp CCHHHHHHHHHHHHHTCSC----HHHHHHHSCT-TSCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCcc----HHHHHHHHcC-CCcHHHHHHHHh
Confidence 4899999999999999997 999999 599 999999999994
No 13
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.87 E-value=3.5e-09 Score=66.03 Aligned_cols=40 Identities=25% Similarity=0.336 Sum_probs=37.6
Q ss_pred CCHHHHHHHHHHHhhcCCCCChHHHHHHH-HcCCCCCHHHHHHHHH
Q 034673 1 MDPEQNKKFERALAVYDKDTPDRWQNVAR-AVGGGKSPDDVKRHYD 45 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~tpdRWekIA~-~VpgGKS~~evk~hY~ 45 (87)
.|.+|.++||.||+.|+++ |.+||. .|| +||+.||.++|-
T Consensus 11 WT~eE~~~Fe~~l~~yGKd----f~~I~~~~v~-~Kt~~~~v~fYY 51 (70)
T 2crg_A 11 WSASEACLFEEALEKYGKD----FNDIRQDFLP-WKSLTSIIEYYY 51 (70)
T ss_dssp CCHHHHHHHHHHHHHTCSC----HHHHHHTTCS-SSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcc----HHHHHHHHcC-CCCHHHHHHHHH
Confidence 4899999999999999997 999999 699 999999999995
No 14
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=98.82 E-value=1.1e-08 Score=61.11 Aligned_cols=44 Identities=16% Similarity=0.391 Sum_probs=39.1
Q ss_pred CCHHHHHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHH
Q 034673 1 MDPEQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYDRL 47 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~~L 47 (87)
.|.+|+++|..|+..|.. .+|..||..||+|||..+|+.||...
T Consensus 12 WT~eED~~L~~~v~~~G~---~~W~~IA~~~~~~Rt~~qcr~r~~~~ 55 (58)
T 2elk_A 12 WGADEELLLIDACETLGL---GNWADIADYVGNARTKEECRDHYLKT 55 (58)
T ss_dssp CCHHHHHHHHHHHHHTTT---TCHHHHHHHHCSSCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCc---CCHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 389999999999999974 46999999999779999999999754
No 15
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=98.77 E-value=1.4e-08 Score=58.73 Aligned_cols=44 Identities=11% Similarity=0.391 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 034673 1 MDPEQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYDRLV 48 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~~Lv 48 (87)
.|.+|+.+|..+...|.. .+|..||..|| |+|..+|+.||..++
T Consensus 6 Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L 49 (52)
T 1guu_A 6 WTREEDEKLKKLVEQNGT---DDWKVIANYLP-NRTDVQCQHRWQKVL 49 (52)
T ss_dssp CCHHHHHHHHHHHHHHCS---SCHHHHHHTST-TCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCC---CCHHHHHHHcC-CCCHHHHHHHHHHHc
Confidence 489999999999999964 36999999999 999999999998765
No 16
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=98.66 E-value=3.1e-08 Score=58.87 Aligned_cols=44 Identities=9% Similarity=0.338 Sum_probs=39.1
Q ss_pred CCHHHHHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 034673 1 MDPEQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYDRLV 48 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~~Lv 48 (87)
.|.+|+.+|..+...|.. .+|..||..|| |+|..+|+.||..++
T Consensus 11 Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l 54 (60)
T 2d9a_A 11 WTHEEDEQLRALVRQFGQ---QDWKFLASHFP-NRTDQQCQYRWLRVL 54 (60)
T ss_dssp CCHHHHHHHHHHHHHTCT---TCHHHHHHHCS-SSCHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHHhCC---CCHHHHHHHcc-CCCHHHHHHHHHHHc
Confidence 489999999999999973 46999999999 999999999998653
No 17
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=98.63 E-value=2.9e-08 Score=57.50 Aligned_cols=43 Identities=14% Similarity=0.447 Sum_probs=38.6
Q ss_pred CCHHHHHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHH
Q 034673 1 MDPEQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYDRL 47 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~~L 47 (87)
.|.+|+.+|..+...|.. .+|..||..|| |+|..+|+.||...
T Consensus 6 Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~~-~Rt~~qcr~Rw~~~ 48 (52)
T 1gvd_A 6 WTKEEDQRLIKLVQKYGP---KRWSVIAKHLK-GRIGKQCRERWHNH 48 (52)
T ss_dssp CCHHHHHHHHHHHHHHCT---TCHHHHHTTST-TCCHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHCc---ChHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 489999999999999974 35999999999 99999999999754
No 18
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.58 E-value=9.5e-08 Score=62.35 Aligned_cols=47 Identities=13% Similarity=0.456 Sum_probs=42.7
Q ss_pred CCHHHHHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Q 034673 1 MDPEQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYDRLVEDLI 52 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~~LveDV~ 52 (87)
.|.+|+.+|..++..|+. +|..||..|| |+|..+|+.||..|+..+.
T Consensus 56 WT~eEd~~L~~~~~~~G~----~W~~Ia~~l~-gRt~~~~k~rw~~l~r~~~ 102 (107)
T 2k9n_A 56 WSPEEDMLLDQKYAEYGP----KWNKISKFLK-NRSDNNIRNRWMMIARHRA 102 (107)
T ss_dssp CCHHHHHHHHHHHHHTCS----CHHHHHHHHS-SSCHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCc----CHHHHHHHCC-CCCHHHHHHHHHHHHhhHH
Confidence 489999999999999974 6999999999 9999999999999987654
No 19
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.54 E-value=7.8e-08 Score=62.09 Aligned_cols=43 Identities=19% Similarity=0.491 Sum_probs=39.5
Q ss_pred CCHHHHHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 034673 1 MDPEQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYDRLV 48 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~~Lv 48 (87)
.|.+|+.+|..+++.|+. +|..||..|| |+|..+|+.||..|+
T Consensus 59 Wt~eEd~~L~~~~~~~G~----~W~~Ia~~l~-gRt~~~~k~rw~~~~ 101 (105)
T 1gv2_A 59 WTEEEDRIIYQAHKRLGN----RWAEIAKLLP-GRTDNAIKNHWNSTM 101 (105)
T ss_dssp CCHHHHHHHHHHHHHHSS----CHHHHHTTCT-TCCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhCC----CHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 489999999999999973 6999999999 999999999998774
No 20
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.50 E-value=1.3e-07 Score=71.42 Aligned_cols=56 Identities=23% Similarity=0.250 Sum_probs=44.1
Q ss_pred CCHHHHHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHH------HHHHHHHHHhCCCCC
Q 034673 1 MDPEQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYDR------LVEDLIFIESAQFPL 61 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~~------LveDV~~IEsg~v~~ 61 (87)
.|.+|.++|+.||+.|.++ |..||..|| |||..+|+.||-. |-+-++.-|+..-++
T Consensus 136 WTeEE~~lFleAl~kYGKD----W~~IAk~Vg-TKT~~QcKnfY~~~kKRlnLD~ilke~eae~g~~ 197 (235)
T 2iw5_B 136 WTTEEQLLAVQAIRKYGRD----FQAISDVIG-NKSVVQVKNFFVNYRRRFNIDEVLQEWEAEHGKE 197 (235)
T ss_dssp CCHHHHHHHHHHHHHHSSC----HHHHHHHHS-SCCHHHHHHHHHHTTTTTTHHHHHHHHHTC----
T ss_pred CCHHHHHHHHHHHHHHCcC----HHHHHHHcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHhcCCC
Confidence 4899999999999999976 999999999 9999999999942 545555666555443
No 21
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.49 E-value=2.5e-07 Score=56.53 Aligned_cols=43 Identities=19% Similarity=0.384 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHH
Q 034673 1 MDPEQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYDRL 47 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~~L 47 (87)
.|.+|+.+|..+...|.. .+|..||..|| |+|..+|+.||...
T Consensus 12 Wt~eED~~L~~~v~~~G~---~~W~~Ia~~l~-~Rt~~qcr~Rw~~~ 54 (70)
T 2dim_A 12 WRNTEDEILKAAVMKYGK---NQWSRIASLLH-RKSAKQCKARWYEW 54 (70)
T ss_dssp CCHHHHHHHHHHHHHTCS---SCHHHHHHHST-TCCHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHCc---CCHHHHHHHhc-CCCHHHHHHHHHHH
Confidence 489999999999999973 46999999999 99999999999764
No 22
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=98.42 E-value=3.8e-07 Score=59.59 Aligned_cols=40 Identities=13% Similarity=0.177 Sum_probs=37.2
Q ss_pred CCHHHHHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHH
Q 034673 1 MDPEQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYD 45 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~ 45 (87)
.|.+|..+|+.||..|+++ |.+||+.|| +||..||..+|=
T Consensus 46 WT~eE~~~F~~~~~~~gK~----F~~Ia~~l~-~Kt~~~cV~~YY 85 (94)
T 4a69_C 46 WSEQEKETFREKFMQHPKN----FGLIASFLE-RKTVAECVLYYY 85 (94)
T ss_dssp CCHHHHHHHHHHHHHSTTC----HHHHHHTCT-TCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCC----HHHHHHHcC-CCCHHHHHHHHh
Confidence 3889999999999999875 999999999 999999999994
No 23
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=98.40 E-value=2.9e-07 Score=71.26 Aligned_cols=57 Identities=25% Similarity=0.310 Sum_probs=50.1
Q ss_pred CCHHHHHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHH----------HHHHhCCCCC
Q 034673 1 MDPEQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYDRLVEDL----------IFIESAQFPL 61 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~~LveDV----------~~IEsg~v~~ 61 (87)
.|..|.+.|.+|++.|..+ .|++||+.|+ |||.+||+++|+.+.+.. ..||.|...+
T Consensus 113 W~rrdf~~Fi~a~~kyGr~---~~~~IA~ev~-~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki 179 (304)
T 1ofc_X 113 WTKRDFNQFIKANEKYGRD---DIDNIAKDVE-GKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKI 179 (304)
T ss_dssp CCHHHHHHHHHHHHHHCTT---CHHHHTTSST-TCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCHH---HHHHHHHHhc-CCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHH
Confidence 3788999999999999874 4999999999 899999999999999998 7788876443
No 24
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.38 E-value=1.8e-07 Score=62.46 Aligned_cols=43 Identities=21% Similarity=0.493 Sum_probs=39.3
Q ss_pred CCHHHHHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 034673 1 MDPEQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYDRLV 48 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~~Lv 48 (87)
.|.+|+++|..+++.|+. +|..||..|| |+|..+|+.||..|+
T Consensus 82 WT~eEd~~L~~~~~~~G~----~W~~Ia~~l~-gRt~~~~k~r~~~~~ 124 (128)
T 1h8a_C 82 WTEEEDRIIYQAHKRLGN----RWAEIAKLLP-GRTDNAVKNHWNSTM 124 (128)
T ss_dssp CCHHHHHHHHHHHHHHCS----CHHHHGGGST-TCCHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHHHHHCc----CHHHHHHHCC-CCCHHHHHHHHHHHH
Confidence 489999999999999974 6999999999 999999999998764
No 25
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.37 E-value=5.4e-07 Score=60.32 Aligned_cols=46 Identities=15% Similarity=0.407 Sum_probs=41.6
Q ss_pred CCHHHHHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Q 034673 1 MDPEQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYDRLVEDL 51 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~~LveDV 51 (87)
.|.+|+.+|..+++.|+. +|.+||..|| |+|..+|+.||..|+.-+
T Consensus 65 WT~eEd~~L~~~v~~~G~----~W~~Ia~~l~-gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 65 WTAEEDALLVQKIQEYGR----QWAIIAKFFP-GRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp CCHHHHHHHHHHHHHHCS----CHHHHHTTST-TCCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHCc----CHHHHHHHcC-CCCHHHHHHHHHHHHHhc
Confidence 489999999999999974 5999999999 999999999999987653
No 26
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=97.67 E-value=6.4e-08 Score=62.31 Aligned_cols=44 Identities=23% Similarity=0.375 Sum_probs=39.3
Q ss_pred CCHHHHHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 034673 1 MDPEQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYDRLVE 49 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~~Lve 49 (87)
.|.+|+.+|..++..|.. +|..||..|| |+|..+|+.||..++.
T Consensus 19 WT~eEd~~l~~~~~~~G~----~W~~IA~~l~-gRt~~q~k~r~~~~lr 62 (89)
T 2ltp_A 19 WTEEEMGTAKKGLLEHGR----NWSAIARMVG-SKTVSQCKNFYFNYKK 62 (89)
Confidence 489999999999999965 5999999999 9999999999976543
No 27
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.29 E-value=9.3e-07 Score=57.60 Aligned_cols=43 Identities=12% Similarity=0.433 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHH
Q 034673 1 MDPEQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYDRL 47 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~~L 47 (87)
.|.+|+.+|..+...|+. .+|..||..|| |+|..+|+.||...
T Consensus 4 Wt~eED~~L~~~v~~~g~---~~W~~Ia~~~~-~Rt~~qcr~Rw~~~ 46 (107)
T 2k9n_A 4 FTEEEDLKLQQLVMRYGA---KDWIRISQLMI-TRNPRQCRERWNNY 46 (107)
T ss_dssp SCHHHHHHHHHHHHHHCS---SCHHHHHHHTT-TSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCC---CCHHHHhhhcC-CCCHHHHHHHHHHH
Confidence 489999999999999974 46999999999 99999999999764
No 28
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.27 E-value=6.8e-07 Score=57.61 Aligned_cols=43 Identities=14% Similarity=0.432 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHH
Q 034673 1 MDPEQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYDRL 47 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~~L 47 (87)
.|.+|+.+|..+...|+. .+|..||..|| |+|..+|+.||...
T Consensus 7 WT~eED~~L~~~v~~~g~---~~W~~Ia~~l~-~Rt~~qcr~Rw~~~ 49 (105)
T 1gv2_A 7 WTKEEDQRVIKLVQKYGP---KRWSVIAKHLK-GRIGKQCRERWHNH 49 (105)
T ss_dssp CCHHHHHHHHHHHHHHCT---TCHHHHHTTST-TCCHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhCC---CcHHHHhhhhc-CCCHHHHHHHHHhc
Confidence 489999999999999975 35999999999 99999999999764
No 29
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.24 E-value=6e-07 Score=61.75 Aligned_cols=43 Identities=19% Similarity=0.491 Sum_probs=39.3
Q ss_pred CCHHHHHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 034673 1 MDPEQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYDRLV 48 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~~Lv 48 (87)
.|.+|+.+|..++..|+. +|..||..|| |+|..+|+.||..|+
T Consensus 113 WT~eEd~~L~~~~~~~g~----~W~~Ia~~l~-gRt~~~~knr~~~~~ 155 (159)
T 1h89_C 113 WTEEEDRIIYQAHKRLGN----RWAEIAKLLP-GRTDNAIKNHWNSTM 155 (159)
T ss_dssp CCHHHHHHHHHHHHHHCS----CHHHHHTTST-TCCHHHHHHHHHTTT
T ss_pred CChHHHHHHHHHHHHHCC----CHHHHHHHCC-CCCHHHHHHHHHHHH
Confidence 489999999999999973 7999999999 999999999998764
No 30
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=98.22 E-value=3.1e-06 Score=49.17 Aligned_cols=45 Identities=11% Similarity=0.217 Sum_probs=39.3
Q ss_pred CCHHHHHHHHHHHhhcCCCCChHHHHHHHHcCC-CCCHHHHHHHHHHHH
Q 034673 1 MDPEQNKKFERALAVYDKDTPDRWQNVARAVGG-GKSPDDVKRHYDRLV 48 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~tpdRWekIA~~Vpg-GKS~~evk~hY~~Lv 48 (87)
.|.+|+.+|-.+...|.. ..|..||..+|. |+|..+|+.||..++
T Consensus 5 WT~eEd~~L~~~v~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~ 50 (53)
T 1w0t_A 5 WLWEEDKNLRSGVRKYGE---GNWSKILLHYKFNNRTSVMLKDRWRTMK 50 (53)
T ss_dssp CCHHHHHHHHHHHHHHCT---TCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCc---CCHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 489999999999999973 469999999983 499999999998775
No 31
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.21 E-value=1.7e-06 Score=57.71 Aligned_cols=43 Identities=14% Similarity=0.451 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHH
Q 034673 1 MDPEQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYDRL 47 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~~L 47 (87)
.|.+|+.+|..+...|+. .+|..||..|| |+|..+|+.||...
T Consensus 30 Wt~eED~~L~~~v~~~g~---~~W~~Ia~~l~-~Rt~~qcr~Rw~~~ 72 (128)
T 1h8a_C 30 WTKEEDQRVIEHVQKYGP---KRWSDIAKHLK-GRIGKQCRERWHNH 72 (128)
T ss_dssp CCHHHHHHHHHHHHHTCS---CCHHHHHHHSS-SCCHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHCC---CCHHHHHHHhc-CCcHHHHHHHHHHh
Confidence 489999999999999974 46999999999 99999999999864
No 32
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.20 E-value=1.8e-06 Score=57.78 Aligned_cols=42 Identities=17% Similarity=0.457 Sum_probs=38.5
Q ss_pred CCHHHHHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHH
Q 034673 1 MDPEQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYDRL 47 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~~L 47 (87)
.|.+|+.+|..+...|.. .|..||..|| |+|..+|+.||...
T Consensus 14 WT~eED~~L~~~v~~~G~----~W~~Ia~~~~-~Rt~~qcr~Rw~~~ 55 (126)
T 3osg_A 14 FTPEEDEMLKRAVAQHGS----DWKMIAATFP-NRNARQCRDRWKNY 55 (126)
T ss_dssp CCHHHHHHHHHHHHHHTT----CHHHHHHTCT-TCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCC----CHHHHHHHcC-CCCHHHHHHHHhhh
Confidence 489999999999999964 5999999999 99999999999864
No 33
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=98.20 E-value=5.1e-06 Score=50.68 Aligned_cols=45 Identities=9% Similarity=0.271 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHHHhhcCCCCChHHHHHHHHcC-CCCCHHHHHHHHHHHH
Q 034673 1 MDPEQNKKFERALAVYDKDTPDRWQNVARAVG-GGKSPDDVKRHYDRLV 48 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~tpdRWekIA~~Vp-gGKS~~evk~hY~~Lv 48 (87)
.|.||+.+|..+...|... .|..||..+| .|+|..+|+.||..|+
T Consensus 14 WT~eED~~L~~~V~~~G~~---~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~ 59 (64)
T 3sjm_A 14 WTVEESEWVKAGVQKYGEG---NWAAISKNYPFVNRTAVMIKDRWRTMK 59 (64)
T ss_dssp CCHHHHHHHHHHHHHHCTT---CHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCC---chHHHHhhcCCCCCCHHHHHHHHHHHh
Confidence 3899999999999999753 4999999965 3799999999998775
No 34
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=98.01 E-value=9.3e-06 Score=51.13 Aligned_cols=44 Identities=23% Similarity=0.437 Sum_probs=39.1
Q ss_pred CCHHHHHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Q 034673 1 MDPEQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYDRLVED 50 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~~LveD 50 (87)
+|.||++++..+.+.|... |.+||..+ |+|..+|+.||..|.++
T Consensus 26 wT~EED~~L~~l~~~~G~k----W~~IA~~l--gRt~~q~knRw~~L~~~ 69 (73)
T 2llk_A 26 YTPEEIEKLKELRIKHGND----WATIGAAL--GRSASSVKDRCRLMKDT 69 (73)
T ss_dssp SCHHHHHHHHHHHHHHSSC----HHHHHHHH--TSCHHHHHHHHHHCSCC
T ss_pred CCHHHHHHHHHHHHHHCCC----HHHHHHHh--CCCHHHHHHHHHHHHHH
Confidence 5899999999999999753 99999999 69999999999987554
No 35
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=98.00 E-value=2.4e-05 Score=47.53 Aligned_cols=46 Identities=11% Similarity=0.221 Sum_probs=39.9
Q ss_pred CCHHHHHHHHHHHhhcCCCCChHHHHHHHHcCC-CCCHHHHHHHHHHHHH
Q 034673 1 MDPEQNKKFERALAVYDKDTPDRWQNVARAVGG-GKSPDDVKRHYDRLVE 49 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~tpdRWekIA~~Vpg-GKS~~evk~hY~~Lve 49 (87)
.|.+|+.+|-.+...|.. ..|..||..+|. |+|..+|+.||..++.
T Consensus 13 WT~eED~~L~~~v~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~ 59 (69)
T 1ity_A 13 WLWEEDKNLRSGVRKYGE---GNWSKILLHYKFNNRTSVMLKDRWRTMKK 59 (69)
T ss_dssp CCHHHHHHHHHHHHHHCS---SCHHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCC---CcHHHHHHHcCcCCCCHHHHHHHHHHHcC
Confidence 489999999999999964 369999999983 5999999999987753
No 36
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=97.99 E-value=4.4e-06 Score=56.09 Aligned_cols=45 Identities=16% Similarity=0.479 Sum_probs=40.1
Q ss_pred CCHHHHHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Q 034673 1 MDPEQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYDRLVED 50 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~~LveD 50 (87)
.|.+|+.+|..+...|.. +|..||..|| |+|..+|+.||..++.-
T Consensus 57 Wt~eEd~~L~~~~~~~G~----~W~~Ia~~l~-gRt~~~~k~rw~~~l~~ 101 (131)
T 3zqc_A 57 WTPEEDETIFRNYLKLGS----KWSVIAKLIP-GRTDNAIKNRWNSSISK 101 (131)
T ss_dssp CCHHHHHHHHHHHHHSCS----CHHHHTTTST-TCCHHHHHHHHHHTTGG
T ss_pred CCHHHHHHHHHHHHHHCc----CHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 489999999999999974 5999999999 99999999999877643
No 37
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=97.96 E-value=3.7e-06 Score=56.45 Aligned_cols=43 Identities=7% Similarity=0.261 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHH
Q 034673 1 MDPEQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYDRL 47 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~~L 47 (87)
.|.+|+.+|..++..|.. ..|..||..|| |+|..+|+.||...
T Consensus 5 Wt~eED~~L~~~v~~~g~---~~W~~Ia~~~~-~Rt~~qcr~Rw~~~ 47 (131)
T 3zqc_A 5 FTEAEDDLIREYVKENGP---QNWPRITSFLP-NRSPKQCRERWFNH 47 (131)
T ss_dssp CCHHHHHHHHHHHHHHCS---CCGGGGTTSCT-TSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCc---CCHHHHHHHHC-CCCHHHHHHHHhhc
Confidence 489999999999999964 35999999999 99999999999654
No 38
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=97.87 E-value=1.3e-05 Score=54.91 Aligned_cols=43 Identities=14% Similarity=0.432 Sum_probs=38.6
Q ss_pred CCHHHHHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHH
Q 034673 1 MDPEQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYDRL 47 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~~L 47 (87)
.|.+|+..|..+...|+. .+|..||..+| |+|..+|+.||...
T Consensus 61 Wt~eEd~~L~~~v~~~g~---~~W~~Ia~~l~-~Rt~~qcr~Rw~~~ 103 (159)
T 1h89_C 61 WTKEEDQRVIKLVQKYGP---KRWSVIAKHLK-GRIGKQCRERWHNH 103 (159)
T ss_dssp CCHHHHHHHHHHHHHHCS---CCHHHHHHTST-TCCHHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHHhCc---ccHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 489999999999999974 46999999999 99999999999764
No 39
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.72 E-value=3.7e-05 Score=62.75 Aligned_cols=53 Identities=25% Similarity=0.318 Sum_probs=43.1
Q ss_pred CCHHHHHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHH------HHHHHHHHHhCC
Q 034673 1 MDPEQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYDR------LVEDLIFIESAQ 58 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~~------LveDV~~IEsg~ 58 (87)
.|.+|..+|++||..|.++ |..||..|+ .||+.+|+.||.. |-+-|..-|+-+
T Consensus 383 WT~eE~~~f~~al~~yGkd----w~~IA~~Vg-TKT~~Qvk~fy~~~kkr~~ld~il~e~e~~~ 441 (482)
T 2xag_B 383 WTTEEQLLAVQAIRKYGRD----FQAISDVIG-NKSVVQVKNFFVNYRRRFNIDEVLQEWEAEH 441 (482)
T ss_dssp CCHHHHHHHHHHHHHHTTC----HHHHHHHHS-SCCHHHHHHHHHHTTTTTTHHHHHHHHHTC-
T ss_pred CCHHHHHHHHHHHHHHCcC----HHHHHHHhC-CCCHHHHHHHHHHHHHHhChHHHHHHHHHhh
Confidence 3889999999999999885 999999999 9999999999953 444555545433
No 40
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=97.41 E-value=0.00044 Score=44.23 Aligned_cols=45 Identities=18% Similarity=0.343 Sum_probs=40.5
Q ss_pred CCHHHHHHHHHHHhhcCCCCChHHHHHHHH----cCCCCCHHHHHHHHHHHHH
Q 034673 1 MDPEQNKKFERALAVYDKDTPDRWQNVARA----VGGGKSPDDVKRHYDRLVE 49 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~tpdRWekIA~~----VpgGKS~~evk~hY~~Lve 49 (87)
.|.+|+.+|-.+...|..+ +|..|+.. +| |+|..+|+.||..|+.
T Consensus 3 WT~eEd~~L~~gv~k~G~g---~W~~I~~~~~~~~~-~RT~~~lKdrWrnllk 51 (83)
T 2ckx_A 3 FSVAEVEALVEAVEHLGTG---RWRDVKMRAFDNAD-HRTYVDLKDKWKTLVH 51 (83)
T ss_dssp CCHHHHHHHHHHHHHHCSS---CHHHHHHHHCTTCT-TSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCC---CcHHHHHhhccccC-CCCHHHHHHHHHHHHH
Confidence 4899999999999999764 59999996 89 9999999999998875
No 41
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.35 E-value=0.00084 Score=44.74 Aligned_cols=49 Identities=14% Similarity=0.308 Sum_probs=41.7
Q ss_pred CHHHHHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Q 034673 2 DPEQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYDRLVEDLI 52 (87)
Q Consensus 2 T~eenK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~~LveDV~ 52 (87)
|+++|+..-++...- -.+++.|-.||..+. .||.+||+.||..|+.-+.
T Consensus 37 TRe~DR~IL~~cQ~~-G~s~~tFa~iA~~L~-Nks~nqV~~RFq~Lm~Lf~ 85 (95)
T 1ug2_A 37 TREADRVILTMCQEQ-GAQPHTFSVISQQLG-NKTPVEVSHRFRELMQLFH 85 (95)
T ss_dssp CHHHHHHHHHHHHHT-TSCTTTHHHHHHHHS-SCCHHHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHhc-CCChhHHHHHHHHHc-cCCHHHHHHHHHHHHHHHH
Confidence 889999888876663 345789999999998 8999999999999987665
No 42
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.12 E-value=7e-05 Score=61.13 Aligned_cols=39 Identities=21% Similarity=0.344 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHH
Q 034673 1 MDPEQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHY 44 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY 44 (87)
.|.+|.++||.+|..|+++ |.+|+..|| +||..||.++|
T Consensus 192 WT~eE~~lFe~al~~yGKd----F~~I~~~lp-~Ksv~e~V~yY 230 (482)
T 2xag_B 192 WTVEDKVLFEQAFSFHGKT----FHRIQQMLP-DKSIASLVKFY 230 (482)
T ss_dssp --------------------------------------------
T ss_pred cCHHHHHHHHHHHHHcCcc----HHHHHHHcC-CCCHHHHHHHh
Confidence 4789999999999999987 799999999 99999999987
No 43
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.91 E-value=0.002 Score=45.31 Aligned_cols=49 Identities=16% Similarity=0.283 Sum_probs=41.2
Q ss_pred CCHHHHHHHHHHHhhcCCCCChHHHHHHHH--cCCCCCHHHHHHHHHHHHHHH
Q 034673 1 MDPEQNKKFERALAVYDKDTPDRWQNVARA--VGGGKSPDDVKRHYDRLVEDL 51 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~tpdRWekIA~~--VpgGKS~~evk~hY~~LveDV 51 (87)
+|..|-+.|.+|+..|... .+||+.|++. ++ +||.++|++.|+.+.+--
T Consensus 10 ~t~~E~r~fira~~kfG~~-~~r~~~I~~da~L~-~Ks~~~v~~y~~~f~~~c 60 (211)
T 4b4c_A 10 FSDAEIRRFIKSYKKFGGP-LERLDAIARDAELV-DKSETDLRRLGELVHNGC 60 (211)
T ss_dssp SCHHHHHHHHHHHTTCSSG-GGCHHHHHHHTTCT-TSCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCc-hhHHHHHHHHhccC-CCCHHHHHHHHHHHHHHH
Confidence 5889999999999999732 4899999975 78 899999999888876653
No 44
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=96.89 E-value=0.00075 Score=51.25 Aligned_cols=49 Identities=6% Similarity=0.185 Sum_probs=41.4
Q ss_pred CCHHHHHHHHHHHhhcCCC--CChHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Q 034673 1 MDPEQNKKFERALAVYDKD--TPDRWQNVARAVGGGKSPDDVKRHYDRLVED 50 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~--tpdRWekIA~~VpgGKS~~evk~hY~~LveD 50 (87)
+|.||+..+-.+...|+.. +.--|..||..+| |+|.-+|+.||..++..
T Consensus 11 FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~Lp-GRT~nsIRnRw~~~L~~ 61 (246)
T 1ign_A 11 FTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSK 61 (246)
T ss_dssp CCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGG
T ss_pred CCHHHHHHHHHHHHHhCcCccccccHHHHHHHcC-CCCHHHHHHHHHHHHhh
Confidence 5899999999999998753 3344999999999 99999999999976543
No 45
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=96.64 E-value=0.0032 Score=41.96 Aligned_cols=45 Identities=18% Similarity=0.358 Sum_probs=40.1
Q ss_pred CCHHHHHHHHHHHhhcCCCCChHHHHHHHHc----CCCCCHHHHHHHHHHHHH
Q 034673 1 MDPEQNKKFERALAVYDKDTPDRWQNVARAV----GGGKSPDDVKRHYDRLVE 49 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~tpdRWekIA~~V----pgGKS~~evk~hY~~Lve 49 (87)
.|.||+.+|-.+...|..+ +|-.|+... | |+|..+|+.+|..|+.
T Consensus 16 WT~EEd~~L~~gV~k~G~g---~W~~I~~~~~~~f~-~RT~v~lKdrWrnllk 64 (105)
T 2aje_A 16 FSVAEVEALVQAVEKLGTG---RWRDVKLCAFEDAD-HRTYVDLKDKWKTLVH 64 (105)
T ss_dssp CCHHHHHHHHHHHHHHCSS---SHHHHHSSSSSSTT-CCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCC---ChHHHHHHhccccC-CCCHHHHHHHHHHHHh
Confidence 4899999999999999764 599999976 7 8999999999999874
No 46
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=96.58 E-value=0.0064 Score=41.52 Aligned_cols=45 Identities=18% Similarity=0.304 Sum_probs=40.2
Q ss_pred CCHHHHHHHHHHHhhcCCCCChHHHHHHHHc----CCCCCHHHHHHHHHHHHH
Q 034673 1 MDPEQNKKFERALAVYDKDTPDRWQNVARAV----GGGKSPDDVKRHYDRLVE 49 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~tpdRWekIA~~V----pgGKS~~evk~hY~~Lve 49 (87)
.|.||+.++-.+...|..+ +|-.|+... + |+|..+|+.+|..|+.
T Consensus 34 WT~EEd~~L~~gV~k~G~g---~W~~I~~~~~~~~~-~RT~vdlKdRWrnllk 82 (122)
T 2roh_A 34 FTVAEVELLVEAVEHLGTG---RWRDVKFRAFENVH-HRTYVDLKDKWKTLVH 82 (122)
T ss_dssp CCHHHHHHHHHHHHHHSSS---CHHHHHHHHHSSSC-CCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCC---ChHHHHHHhccccC-CCCHHHHHHHHHHHHh
Confidence 4899999999999999754 699999985 8 8999999999998874
No 47
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=96.37 E-value=0.0055 Score=41.83 Aligned_cols=46 Identities=17% Similarity=0.335 Sum_probs=40.8
Q ss_pred CCHHHHHHHHHHHhhcCCCCChHHHHHHHHc----CCCCCHHHHHHHHHHHHHH
Q 034673 1 MDPEQNKKFERALAVYDKDTPDRWQNVARAV----GGGKSPDDVKRHYDRLVED 50 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~tpdRWekIA~~V----pgGKS~~evk~hY~~LveD 50 (87)
.|.+|+.++-.+...|.. -+|-.||... | |+|..+|+.+|..|+.-
T Consensus 20 WT~EEd~~L~~gV~k~G~---G~W~~Ia~~~~~~f~-~RT~v~lKdRWrnllk~ 69 (121)
T 2juh_A 20 FSVAEVEALVEAVEHLGT---GRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHT 69 (121)
T ss_dssp CCHHHHHHHHHHHHHHGG---GCHHHHHHHHCSCCS-SCCSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCC---CCHHHHHHHhccccC-CCCHHHHHHHHHHHHhh
Confidence 489999999999999974 4699999996 8 89999999999988763
No 48
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=96.14 E-value=0.0079 Score=37.10 Aligned_cols=43 Identities=16% Similarity=0.387 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHHHhhcCCCCChHHHHHHH---HcCCCCCHHHHHHHHHHHH
Q 034673 1 MDPEQNKKFERALAVYDKDTPDRWQNVAR---AVGGGKSPDDVKRHYDRLV 48 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~tpdRWekIA~---~VpgGKS~~evk~hY~~Lv 48 (87)
.|.||+..+......|.. .|-.|+. .++ |+|..+++.+|..|.
T Consensus 11 WT~EE~~~L~~gV~k~G~----~W~~I~~~y~f~~-~RT~VdLKdk~r~L~ 56 (62)
T 1x58_A 11 FTKEEVNYLFHGVKTMGN----HWNSILWSFPFQK-GRRAVDLAHKYHRLI 56 (62)
T ss_dssp CCHHHHHHHHHHHHHHCS----CHHHHHHHSCCCT-TCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhH----hHHHHHHhCCCcc-CcccchHHHHHHHHH
Confidence 489999999999999975 5999995 667 899999999999885
No 49
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=95.07 E-value=0.00099 Score=42.26 Aligned_cols=48 Identities=10% Similarity=0.219 Sum_probs=37.5
Q ss_pred CHHHHHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Q 034673 2 DPEQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYDRLVEDLI 52 (87)
Q Consensus 2 T~eenK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~~LveDV~ 52 (87)
|+++|+..-.+...- -.+++.|..||..+ +||.+||+.||..|+.-+.
T Consensus 18 TReeDR~IL~~cq~~-G~s~~tfa~iA~~L--nks~~QV~~RF~~Lm~Lf~ 65 (70)
T 2lr8_A 18 TRNDDRVILLECQKR-GPSSKTFAYLAAKL--DKNPNQVSERFQQLMKLFE 65 (70)
Confidence 778888766654432 23469999999998 5999999999999987654
No 50
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=95.75 E-value=0.027 Score=33.60 Aligned_cols=45 Identities=9% Similarity=0.192 Sum_probs=39.3
Q ss_pred CCHHHHHHHHHHHhhcCCC-----CChHHHHHHH-HcCCCCCHHHHHHHHHH
Q 034673 1 MDPEQNKKFERALAVYDKD-----TPDRWQNVAR-AVGGGKSPDDVKRHYDR 46 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~-----tpdRWekIA~-~VpgGKS~~evk~hY~~ 46 (87)
+|.+||+.+-.-++.|... ...-|..+|+ .+| +-|-.-++.||..
T Consensus 5 FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~-~HtwqSwRdRy~k 55 (59)
T 1fex_A 5 FTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLK 55 (59)
T ss_dssp CCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCC-CCCHHHHHHHHHH
Confidence 5899999999999999432 4578999999 899 9999999999975
No 51
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=94.44 E-value=0.23 Score=32.46 Aligned_cols=49 Identities=14% Similarity=0.220 Sum_probs=36.9
Q ss_pred CHHHHHHHHHHHhhcCCCCChHHHHHHHHc-----CCCCCHHHHHHHHHHHHHHHHHHH
Q 034673 2 DPEQNKKFERALAVYDKDTPDRWQNVARAV-----GGGKSPDDVKRHYDRLVEDLIFIE 55 (87)
Q Consensus 2 T~eenK~FE~ALa~~~~~tpdRWekIA~~V-----pgGKS~~evk~hY~~LveDV~~IE 55 (87)
|.||...+=.....|+ -||-.|+... + ++|++|+|.||-.+..-+....
T Consensus 34 TkEETd~Lf~L~~~fd----lRW~vI~DRy~~~~~~-~Rt~EdLK~RyY~v~~~l~~~r 87 (93)
T 3hm5_A 34 TKAETDHLFDLSRRFD----LRFVVIHDRYDHQQFK-KRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp CHHHHHHHHHHHHHTT----TCHHHHHHHSCTTTSC-CCCHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhC----CCeeeehhhhccCCCC-CCCHHHHHHHHHHHHHHHHHhc
Confidence 5566555555556665 5799999999 5 7999999999998887665443
No 52
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=92.34 E-value=0.21 Score=39.65 Aligned_cols=44 Identities=20% Similarity=0.341 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 034673 2 DPEQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYDRLV 48 (87)
Q Consensus 2 T~eenK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~~Lv 48 (87)
|+.+=..|=+|++.|..+. -+.||+.|.||||.+||++.++.+.
T Consensus 127 nrrDF~~FI~a~~kyGR~d---~~~IA~ev~~~Kt~eEV~~Y~~vFw 170 (374)
T 2y9y_A 127 NKLEFRKFITVSGKYGRNS---IQAIARELAPGKTLEEVRAYAKAFW 170 (374)
T ss_dssp CHHHHHHHHHHHHHHCTTC---HHHHHSSCCCSSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCHhH---HHHHHHHHccCCCHHHHHHHHHHHH
Confidence 4555667888888888743 7899999976899999997776554
No 53
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=91.33 E-value=0.47 Score=36.54 Aligned_cols=52 Identities=10% Similarity=0.188 Sum_probs=44.2
Q ss_pred CCHHHHHHHHHHHhhcCCCCChHHHHHHHHcCC-----------CCCHHHHHHHHHHHHHHHH
Q 034673 1 MDPEQNKKFERALAVYDKDTPDRWQNVARAVGG-----------GKSPDDVKRHYDRLVEDLI 52 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~tpdRWekIA~~Vpg-----------GKS~~evk~hY~~LveDV~ 52 (87)
.|.+||+.|-..|-.|.-+.+.-|++|-..+.- .+|..||.+|...|+.-|.
T Consensus 215 yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tLi~~ie 277 (304)
T 1ofc_X 215 YTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITLIE 277 (304)
T ss_dssp CCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999999744331 4999999999999986553
No 54
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=89.90 E-value=0.73 Score=34.81 Aligned_cols=48 Identities=13% Similarity=0.232 Sum_probs=39.9
Q ss_pred CCHHHHHHHHHHHhhcCCCCChHHHHHHH--HcCCCCCHHHHHHHHHHHHHH
Q 034673 1 MDPEQNKKFERALAVYDKDTPDRWQNVAR--AVGGGKSPDDVKRHYDRLVED 50 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~tpdRWekIA~--~VpgGKS~~evk~hY~~LveD 50 (87)
+|..|-+.|-+|+..|..-. +||+.|+. .++ .|+.+++++-|+.|++-
T Consensus 6 ltekEiR~l~Ra~~kfG~~~-~R~e~I~~dA~L~-~ks~~~i~~~~~~li~~ 55 (270)
T 2xb0_X 6 IGESEVRALYKAILKFGNLK-EILDELIADGTLP-VKSFEKYGETYDEMMEA 55 (270)
T ss_dssp CCHHHHHHHHHHHHHHSSCT-TCHHHHHHTTSSC-CCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHH-HHHHHHHHhcccc-cCCHHHHHHHHHHHHHH
Confidence 58899999999999997543 69999965 367 79999999999877653
No 55
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=87.61 E-value=1.5 Score=33.21 Aligned_cols=42 Identities=7% Similarity=0.120 Sum_probs=29.1
Q ss_pred hHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH----------HHHhCCCCCCCC
Q 034673 22 DRWQNVARAVGGGKSPDDVKRHYDRLVEDLI----------FIESAQFPLPNY 64 (87)
Q Consensus 22 dRWekIA~~VpgGKS~~evk~hY~~LveDV~----------~IEsg~v~~P~y 64 (87)
..|..||+..| +.|-.-.+.||..++.+.. .++.|.+|=|.-
T Consensus 172 ~~fk~ia~~~P-~HT~~SWRdRyrKfl~~~gi~~yi~yye~~~~~~~~p~~~k 223 (246)
T 1ign_A 172 EFFKHFAEEHA-AHTENAWRDRFRKFLLAYGIDDYISYYEAEKAQNREPEPMK 223 (246)
T ss_dssp THHHHHHHHTT-TSCHHHHHHHHHHTHHHHCHHHHHHHHHTC-------CCCC
T ss_pred HHHHHHHHHCC-CCChhhHHHHHHHHHhhcChHHHHHHHHHHHhcCCCCcccc
Confidence 39999999999 9999999999998876652 246788876654
No 56
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=81.71 E-value=5.2 Score=24.28 Aligned_cols=47 Identities=15% Similarity=0.167 Sum_probs=35.4
Q ss_pred CHHHHHHHHHHHhhcCCCCChHHHHHHHH--cCCCCCHHHHHHHHHHHHHH
Q 034673 2 DPEQNKKFERALAVYDKDTPDRWQNVARA--VGGGKSPDDVKRHYDRLVED 50 (87)
Q Consensus 2 T~eenK~FE~ALa~~~~~tpdRWekIA~~--VpgGKS~~evk~hY~~LveD 50 (87)
|.|....|-.|+..+..+ -..|-+|-.. || |.|.+.|+-|-+.---.
T Consensus 11 T~elH~~Fv~Av~~LG~~-~AtPk~Il~~M~v~-gLT~~~VkSHLQKYR~~ 59 (64)
T 1irz_A 11 THELHNKFLAAVDHLGVE-RAVPKKILDLMNVD-KLTRENVASHLQKFRVA 59 (64)
T ss_dssp CHHHHHHHHHHHHHHCTT-TCCHHHHHHHHCCT-TCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCC-CCCcHHHHHHcCCC-CCCHHHHHHHHHHHHHH
Confidence 789999999999999732 2335666555 78 89999999997654433
No 57
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=80.94 E-value=4.6 Score=24.53 Aligned_cols=56 Identities=11% Similarity=0.216 Sum_probs=40.9
Q ss_pred CHHHHHHHHHHHhhc------CCCCChHHHHHHHHcC---CCCCHHHHHHHHHHHHHHHHHHHhC
Q 034673 2 DPEQNKKFERALAVY------DKDTPDRWQNVARAVG---GGKSPDDVKRHYDRLVEDLIFIESA 57 (87)
Q Consensus 2 T~eenK~FE~ALa~~------~~~tpdRWekIA~~Vp---gGKS~~evk~hY~~LveDV~~IEsg 57 (87)
|.+|-++|-.+.... .......|+.||..+- -.+|+.+|+..++.|...-+.|...
T Consensus 8 t~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~~k~~ 72 (86)
T 2ebi_A 8 VQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKKAKHH 72 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCSCSSC
T ss_pred CHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 456666666665542 1233578999999853 2499999999999999998877653
No 58
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=72.87 E-value=7.3 Score=30.84 Aligned_cols=51 Identities=20% Similarity=0.307 Sum_probs=43.9
Q ss_pred CCHHHHHHHHHHHhhcCCCCChHHHHHHHHcCC-----------CCCHHHHHHHHHHHHHHH
Q 034673 1 MDPEQNKKFERALAVYDKDTPDRWQNVARAVGG-----------GKSPDDVKRHYDRLVEDL 51 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~tpdRWekIA~~Vpg-----------GKS~~evk~hY~~LveDV 51 (87)
.|.+||+.+-..|-.|.-+.++-|++|-..|.- .+|..|+.+|...|+.-|
T Consensus 231 yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tLi~~I 292 (374)
T 2y9y_A 231 YSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTLLQCL 292 (374)
T ss_dssp SCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHH
Confidence 378999999999999999888999999776432 489999999999998654
No 59
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=72.60 E-value=9.9 Score=24.86 Aligned_cols=43 Identities=21% Similarity=0.431 Sum_probs=32.8
Q ss_pred hHHHHHHHHcCCCCC---HHHHHHHHHHHHHHHHHH-HhCCCCCCCC
Q 034673 22 DRWQNVARAVGGGKS---PDDVKRHYDRLVEDLIFI-ESAQFPLPNY 64 (87)
Q Consensus 22 dRWekIA~~VpgGKS---~~evk~hY~~LveDV~~I-Esg~v~~P~y 64 (87)
..|..||..++-..+ ...++.+|...+...... +.|..|.|.-
T Consensus 73 ~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~yE~~~~~g~~~p~~i 119 (125)
T 2cxy_A 73 KKWRELATNLNVGTSSSAASSLKKQYIQYLFAFECKIERGEEPPPEV 119 (125)
T ss_dssp TCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHHHHHHHHCCCCCCSC
T ss_pred CcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCCCChhH
Confidence 479999999973322 578999999887777764 8999877653
No 60
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=71.60 E-value=18 Score=23.45 Aligned_cols=35 Identities=17% Similarity=0.260 Sum_probs=27.3
Q ss_pred ChHHHHHHHHcC----CCCCHHHHHHHHHHHHHHHHHHH
Q 034673 21 PDRWQNVARAVG----GGKSPDDVKRHYDRLVEDLIFIE 55 (87)
Q Consensus 21 pdRWekIA~~Vp----gGKS~~evk~hY~~LveDV~~IE 55 (87)
.-||--|+..-. +.+|++|+|.||-....-+....
T Consensus 49 dlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r 87 (93)
T 4iej_A 49 DLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp TTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 357999998864 26899999999988887766543
No 61
>1hbk_A ACBP, acyl-COA binding protein; fatty acid metabolism; HET: COA MYR; 2.0A {Plasmodium falciparum} SCOP: a.11.1.1
Probab=65.13 E-value=6 Score=24.79 Aligned_cols=21 Identities=19% Similarity=0.488 Sum_probs=18.8
Q ss_pred cCCCCCHHHHHHHHHHHHHHHH
Q 034673 31 VGGGKSPDDVKRHYDRLVEDLI 52 (87)
Q Consensus 31 VpgGKS~~evk~hY~~LveDV~ 52 (87)
+. |.|.+|.|+.|-.|++.+.
T Consensus 64 l~-gms~eeA~~~YI~~v~~l~ 84 (89)
T 1hbk_A 64 VE-NLNREDAQKRYVDIVSEIF 84 (89)
T ss_dssp TT-TCCHHHHHHHHHHHHHHHC
T ss_pred hc-CCCHHHHHHHHHHHHHHHc
Confidence 56 8999999999999999874
No 62
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=63.68 E-value=25 Score=22.20 Aligned_cols=45 Identities=13% Similarity=0.294 Sum_probs=34.3
Q ss_pred CCHHHHHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 034673 1 MDPEQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYDRLV 48 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~~Lv 48 (87)
++.+|.++.++.++.|.. +|-....+|..++ -+..++.+-...|+
T Consensus 1 ~~~~~~~l~~~i~~~~~~-~p~~~~~la~~~~--~~~~~~~~~l~~l~ 45 (121)
T 2pjp_A 1 FSEEQQAIWQKAEPLFGD-EPWWVRDLAKETG--TDEQAMRLTLRQAA 45 (121)
T ss_dssp CCHHHHHHHHHHGGGCSS-SCEEHHHHHHHTT--CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHh-CCCCHHHHHHHhC--CCHHHHHHHHHHHH
Confidence 578899999999999966 5666778998886 67777766555543
No 63
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=63.39 E-value=5.4 Score=24.75 Aligned_cols=36 Identities=22% Similarity=0.446 Sum_probs=25.8
Q ss_pred hHHHHHHHHcCCCC--C-HHHHHHHHHHHHHHHHHHHhC
Q 034673 22 DRWQNVARAVGGGK--S-PDDVKRHYDRLVEDLIFIESA 57 (87)
Q Consensus 22 dRWekIA~~VpgGK--S-~~evk~hY~~LveDV~~IEsg 57 (87)
..|..||..++-.. | ...++.+|...+.......+|
T Consensus 58 ~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~yE~~~~g 96 (96)
T 2jxj_A 58 KKWSKVGSRLGYLPGKGTGSLLKSHYERILYPYELFQSG 96 (96)
T ss_dssp TTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHHHHHHHCC
T ss_pred CcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHHHHHHhcC
Confidence 57999999986212 2 678999998777766655444
No 64
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=62.90 E-value=19 Score=22.59 Aligned_cols=37 Identities=24% Similarity=0.459 Sum_probs=28.3
Q ss_pred hHHHHHHHHcCCCCC---HHHHHHHHHHHHHHHHHHHhCC
Q 034673 22 DRWQNVARAVGGGKS---PDDVKRHYDRLVEDLIFIESAQ 58 (87)
Q Consensus 22 dRWekIA~~VpgGKS---~~evk~hY~~LveDV~~IEsg~ 58 (87)
..|..||..++-..+ ...++.+|...+.......+|.
T Consensus 66 ~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~yE~~~~~~ 105 (107)
T 2lm1_A 66 RKWAKVANRMQYPSSKSVGATLKAHYERILHPFEVYTSGK 105 (107)
T ss_dssp TTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHHHHHHhcC
Confidence 479999999972222 5799999999888877766653
No 65
>2cb8_A Acyl-COA-binding protein; acyl-coenzyme A binding protein, fatty acid, acetylation, alternative splicing, lipid-binding, transport; HET: MYA; 1.4A {Homo sapiens} PDB: 2fj9_A 1aca_A* 1hb6_A 1hb8_A 1nti_A 1nvl_A* 2abd_A 2fdq_A
Probab=62.14 E-value=8.6 Score=24.05 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=19.4
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHH
Q 034673 31 VGGGKSPDDVKRHYDRLVEDLIF 53 (87)
Q Consensus 31 VpgGKS~~evk~hY~~LveDV~~ 53 (87)
+. |.|.+|.++.|-.|++.+..
T Consensus 62 l~-gms~eeA~~~Yi~~v~~l~~ 83 (87)
T 2cb8_A 62 LK-GTSKEDAMKAYINKVEELKK 83 (87)
T ss_dssp TT-TCCHHHHHHHHHHHHHHHHH
T ss_pred cC-CCCHHHHHHHHHHHHHHHHH
Confidence 46 89999999999999998764
No 66
>1st7_A ACBP, acyl-COA-binding protein; four helix bundle, transport protein; NMR {Saccharomyces cerevisiae}
Probab=60.09 E-value=6.3 Score=24.53 Aligned_cols=22 Identities=41% Similarity=0.673 Sum_probs=19.3
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHH
Q 034673 31 VGGGKSPDDVKRHYDRLVEDLIF 53 (87)
Q Consensus 31 VpgGKS~~evk~hY~~LveDV~~ 53 (87)
+. |.|.+|.|+.|-.|++.+..
T Consensus 61 l~-gms~eeA~~~YI~~v~~l~~ 82 (86)
T 1st7_A 61 LK-GKSQEDAEKEYIALVDQLIA 82 (86)
T ss_dssp TT-TTHHHHHHHHHHHHHHHHHH
T ss_pred cC-CCCHHHHHHHHHHHHHHHhh
Confidence 46 89999999999999998763
No 67
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=59.41 E-value=33 Score=22.26 Aligned_cols=37 Identities=19% Similarity=0.512 Sum_probs=28.8
Q ss_pred hHHHHHHHHcCCCCC---HHHHHHHHHHHHHHHHHHHhCC
Q 034673 22 DRWQNVARAVGGGKS---PDDVKRHYDRLVEDLIFIESAQ 58 (87)
Q Consensus 22 dRWekIA~~VpgGKS---~~evk~hY~~LveDV~~IEsg~ 58 (87)
..|..||..++-..+ ...++.+|...+.......+|.
T Consensus 64 k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~yE~~~~~~ 103 (122)
T 2eqy_A 64 RKWTKIATKMGFAPGKAVGSHIRGHYERILNPYNLFLSGD 103 (122)
T ss_dssp TTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHHHHHHHHCC
T ss_pred CcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHHHHHHhcC
Confidence 579999999962121 4789999999888888877765
No 68
>3epy_A Acyl-COA-binding domain-containing protein 7; acyl-COA binding protein, fatty acid, lipid metabolism, structural genomics; HET: COA PLM; 2.00A {Homo sapiens} SCOP: a.11.1.1
Probab=59.37 E-value=9.4 Score=24.04 Aligned_cols=22 Identities=27% Similarity=0.311 Sum_probs=19.6
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHH
Q 034673 31 VGGGKSPDDVKRHYDRLVEDLIF 53 (87)
Q Consensus 31 VpgGKS~~evk~hY~~LveDV~~ 53 (87)
+. |.|.+|.|+.|-.|++.+..
T Consensus 64 l~-g~s~eeA~~~Yi~~v~~l~~ 85 (89)
T 3epy_A 64 KK-GLSTEDATSAYISKAKELIE 85 (89)
T ss_dssp TT-TCCHHHHHHHHHHHHHHHHH
T ss_pred hh-CCCHHHHHHHHHHHHHHHhh
Confidence 66 89999999999999998764
No 69
>2lbb_A Acyl COA binding protein; protein binding, structural genomi seattle structural genomics center for infectious disease,; NMR {Babesia bovis}
Probab=58.60 E-value=9 Score=24.67 Aligned_cols=28 Identities=25% Similarity=0.578 Sum_probs=21.7
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Q 034673 23 RWQNVARAVGGGKSPDDVKRHYDRLVEDLI 52 (87)
Q Consensus 23 RWekIA~~VpgGKS~~evk~hY~~LveDV~ 52 (87)
+|+--.+ +. |.|.+|.|+.|-.|++.+.
T Consensus 64 Kw~AW~~-l~-gmS~eeAm~~YI~lv~~l~ 91 (96)
T 2lbb_A 64 KWEAWNA-LR-GMSTESAKEAYVKLLDTLA 91 (96)
T ss_dssp HHHHHHH-TT-TCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHH-hc-CCCHHHHHHHHHHHHHHHh
Confidence 3444333 46 8999999999999999875
No 70
>3fp5_A Acyl-COA binding protein; ACBP, cacao disease, fatty acid metabolism, lipid binding protein; HET: MES; 1.61A {Moniliophthora perniciosa} SCOP: a.11.1.0
Probab=58.03 E-value=13 Score=24.22 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=20.3
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHH
Q 034673 31 VGGGKSPDDVKRHYDRLVEDLIFI 54 (87)
Q Consensus 31 VpgGKS~~evk~hY~~LveDV~~I 54 (87)
+. |.|.+|.|+.|-.|++.+..-
T Consensus 68 l~-gmS~eeA~~~YI~~v~~l~~~ 90 (106)
T 3fp5_A 68 VE-GTSKEVAYQKYVEKLLEILKK 90 (106)
T ss_dssp TT-TCCHHHHHHHHHHHHHHHHHH
T ss_pred cc-CCCHHHHHHHHHHHHHHHhcc
Confidence 56 899999999999999988764
No 71
>2cop_A Acyl-coenzyme A binding domain containing 6; acyl COA binding protein, COA binding protein, lipid binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.54 E-value=10 Score=24.82 Aligned_cols=28 Identities=25% Similarity=0.544 Sum_probs=22.1
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Q 034673 23 RWQNVARAVGGGKSPDDVKRHYDRLVEDLI 52 (87)
Q Consensus 23 RWekIA~~VpgGKS~~evk~hY~~LveDV~ 52 (87)
.|+--.+ +. |.|.+|.|+.|-.|++.+.
T Consensus 61 Kw~AW~~-l~-gms~eeAm~~YI~lv~~l~ 88 (109)
T 2cop_A 61 KWEAWKA-LG-DSSPSQAMQEYIAVVKKLD 88 (109)
T ss_dssp HHHHHHS-CT-TCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHH-hc-CCCHHHHHHHHHHHHHHHh
Confidence 3544333 56 8999999999999999886
No 72
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.89 E-value=34 Score=20.69 Aligned_cols=45 Identities=29% Similarity=0.482 Sum_probs=28.6
Q ss_pred CCHHHHHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Q 034673 1 MDPEQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYDRLVEDLI 52 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~~LveDV~ 52 (87)
+|.++-..+...+ . ..+-|+-+. |+.+-|.+||++.|..|+.-..
T Consensus 12 ~s~~~~~~~~~~~---~--~~~~y~iLg--v~~~as~~eIk~aYr~la~~~H 56 (90)
T 2ys8_A 12 FTKEQADAIRRIR---N--SKDSWDMLG--VKPGASRDEVNKAYRKLAVLLH 56 (90)
T ss_dssp CCHHHHHHHHHHH---T--CSSHHHHHT--CCTTCCHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHh---c--CCCHHHHcC--cCCCCCHHHHHHHHHHHHHHHC
Confidence 3455555555433 2 245455554 5548999999999999976554
No 73
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=53.68 E-value=19 Score=24.25 Aligned_cols=39 Identities=8% Similarity=0.152 Sum_probs=31.1
Q ss_pred hHHHHHHHHcCCCCC----HHHHHHHHHHHHHHHHHHHhCCCC
Q 034673 22 DRWQNVARAVGGGKS----PDDVKRHYDRLVEDLIFIESAQFP 60 (87)
Q Consensus 22 dRWekIA~~VpgGKS----~~evk~hY~~LveDV~~IEsg~v~ 60 (87)
..|..||..++-..+ ...++.+|...+........|..+
T Consensus 86 ~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~~~~g~~~ 128 (145)
T 2kk0_A 86 KLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSN 128 (145)
T ss_dssp TCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHHHHHTCCCC
T ss_pred CcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 579999999962222 578999999999999888888654
No 74
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=52.91 E-value=8.5 Score=25.36 Aligned_cols=44 Identities=27% Similarity=0.456 Sum_probs=27.2
Q ss_pred HHHHHHHHHhhcCCCCChH----HHHHHHHcCCCCCHHHHHHHHHHHHHH
Q 034673 5 QNKKFERALAVYDKDTPDR----WQNVARAVGGGKSPDDVKRHYDRLVED 50 (87)
Q Consensus 5 enK~FE~ALa~~~~~tpdR----WekIA~~VpgGKS~~evk~hY~~LveD 50 (87)
+.-+||-.+|..--+-..- =..||..+- |||.+|+++.|.. ..|
T Consensus 91 ~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ik-gkt~eeiR~~f~I-~~d 138 (141)
T 1fs1_B 91 QGTLFELILAANYLDIKGLLDVTCKTVANMIK-GKTPEEIRKTFNI-KND 138 (141)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT-TCCHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-CCCHHHHHHHcCC-CCC
Confidence 4556777666643222221 257999999 8999999988753 344
No 75
>2cqu_A Peroxisomal D3,D2-enoyl-COA isomerase; acyl-COA binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.48 E-value=19 Score=23.84 Aligned_cols=21 Identities=24% Similarity=0.466 Sum_probs=19.1
Q ss_pred cCCCCCHHHHHHHHHHHHHHHH
Q 034673 31 VGGGKSPDDVKRHYDRLVEDLI 52 (87)
Q Consensus 31 VpgGKS~~evk~hY~~LveDV~ 52 (87)
+. |.|.+|.|+.|-.|++.+.
T Consensus 76 l~-gms~eeAm~~YI~lv~~l~ 96 (116)
T 2cqu_A 76 LG-SLPKEAARQNYVDLVSSLS 96 (116)
T ss_dssp HC-SCCHHHHHHHHHHHHHHHC
T ss_pred hc-CCCHHHHHHHHHHHHHHHc
Confidence 46 8999999999999999886
No 76
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=52.10 E-value=16 Score=19.91 Aligned_cols=29 Identities=14% Similarity=0.253 Sum_probs=21.8
Q ss_pred hHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Q 034673 22 DRWQNVARAVGGGKSPDDVKRHYDRLVEDLI 52 (87)
Q Consensus 22 dRWekIA~~VpgGKS~~evk~hY~~LveDV~ 52 (87)
-.+..||..++ .|..-|+.+......-++
T Consensus 32 ~s~~eIA~~lg--is~~tv~~~~~ra~~~l~ 60 (70)
T 2o8x_A 32 LSYADAAAVCG--CPVGTIRSRVARARDALL 60 (70)
T ss_dssp CCHHHHHHHHT--SCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHC--cCHHHHHHHHHHHHHHHH
Confidence 34788888885 888888888876666555
No 77
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=51.76 E-value=34 Score=22.44 Aligned_cols=32 Identities=16% Similarity=0.218 Sum_probs=27.2
Q ss_pred ChHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Q 034673 21 PDRWQNVARAVGGGKSPDDVKRHYDRLVEDLIF 53 (87)
Q Consensus 21 pdRWekIA~~VpgGKS~~evk~hY~~LveDV~~ 53 (87)
...|..||..+. -.+...++.+|...+.....
T Consensus 69 ~k~W~~Va~~lg-~~~~~~Lr~~Y~k~L~~yE~ 100 (123)
T 1kkx_A 69 TQQWSMVAQRLQ-ISDYQQLESIYFRILLPYER 100 (123)
T ss_dssp SHHHHHHHHHHT-CCCHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHC-CChHHHHHHHHHHHHHHHHH
Confidence 369999999998 56699999999988877765
No 78
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=51.35 E-value=34 Score=22.26 Aligned_cols=38 Identities=11% Similarity=0.142 Sum_probs=29.7
Q ss_pred hHHHHHHHHcCCCCC----HHHHHHHHHHHHHHHHHHHhCCC
Q 034673 22 DRWQNVARAVGGGKS----PDDVKRHYDRLVEDLIFIESAQF 59 (87)
Q Consensus 22 dRWekIA~~VpgGKS----~~evk~hY~~LveDV~~IEsg~v 59 (87)
..|..||..++-..+ ...++.+|...+.......+|..
T Consensus 74 k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~yE~~~~~~~ 115 (128)
T 1c20_A 74 KLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLS 115 (128)
T ss_dssp TTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHHHHHHHHCCS
T ss_pred CcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 479999999963332 57899999998888887777643
No 79
>1hx1_B BAG-1, BAG-family molecular chaperone regulator-1; protein-protein complex, apoptosis, protein folding, molecul chaperone; 1.90A {Homo sapiens} SCOP: a.7.7.1 PDB: 3fzf_B* 3fzh_B* 3fzk_B* 3fzl_B* 3fzm_B* 3ldq_B* 3m3z_B*
Probab=50.20 E-value=11 Score=25.39 Aligned_cols=37 Identities=16% Similarity=0.299 Sum_probs=30.5
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 034673 23 RWQNVARAVGGGKSPDDVKRHYDRLVEDLIFIESAQFPLP 62 (87)
Q Consensus 23 RWekIA~~VpgGKS~~evk~hY~~LveDV~~IEsg~v~~P 62 (87)
-|.++.. |- ||++.+.++|..+-.++..||.|-++-|
T Consensus 9 ~lK~L~~-ve--ksv~~~~kkl~~~~~el~~iekGFL~ke 45 (114)
T 1hx1_B 9 ELKKLKH-LE--KSVEKIADQLEELNKELTGIQQGFLPKD 45 (114)
T ss_dssp HHHHHHH-HH--HHHHHHHHHHHHHHHHHHHHHHSCSCHH
T ss_pred HHHHHHH-HH--HHHHHHHHHHHHHHHHHHHHHHcccccH
Confidence 3666654 54 8999999999999999999999987643
No 80
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.03 E-value=34 Score=19.51 Aligned_cols=43 Identities=16% Similarity=0.177 Sum_probs=35.0
Q ss_pred CCHHHHHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHH
Q 034673 1 MDPEQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYD 45 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~ 45 (87)
+|.+|...||.++..-+--+...=+.||..+. -|...|+.=|.
T Consensus 14 ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~--l~~~qV~~WFq 56 (70)
T 2dmu_A 14 FTDEQLEALENLFQETKYPDVGTREQLARKVH--LREEKVEVWFK 56 (70)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHT--CCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCCCHHHHHHHHHHHC--CCHHHeehccc
Confidence 58899999999998876656666688999985 99999887664
No 81
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=49.69 E-value=30 Score=18.87 Aligned_cols=43 Identities=12% Similarity=0.103 Sum_probs=34.7
Q ss_pred CCHHHHHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHH
Q 034673 1 MDPEQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYD 45 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~ 45 (87)
+|.+|-..+|.+...-+--++..=+.+|..++ -|...|+.=|.
T Consensus 7 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~--l~~~qV~~WFq 49 (58)
T 1ig7_A 7 FTTAQLLALERKFRQKQYLSIAERAEFSSSLS--LTETQVKIWFQ 49 (58)
T ss_dssp CCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTT--CCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHC--cCHHHhhhhhh
Confidence 58899999999998877656666688899885 99999887664
No 82
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=49.10 E-value=33 Score=19.05 Aligned_cols=43 Identities=19% Similarity=0.272 Sum_probs=34.6
Q ss_pred CCHHHHHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHH
Q 034673 1 MDPEQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYD 45 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~ 45 (87)
+|.+|...+|.++..-+--+...=+.+|..++ -|...|+.=|.
T Consensus 10 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~--l~~~qV~~WFq 52 (61)
T 2hdd_A 10 FSSEQLARLKREFNENRYLTERRRQQLSSELG--LNEAQIKIWFK 52 (61)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHT--CCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCCCHHHHHHHHHHHC--cCHHHHHHHhh
Confidence 58899999999998877666666788999885 89988886554
No 83
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.67 E-value=45 Score=20.58 Aligned_cols=43 Identities=16% Similarity=0.213 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 034673 4 EQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYDRLV 48 (87)
Q Consensus 4 eenK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~~Lv 48 (87)
+|-.+||.+++.-++-+.+.-++||..|+ -+++-|+.=|..-.
T Consensus 15 ~ql~~Lk~yF~~n~~Ps~eei~~LA~~lg--L~~~VVrVWFqNrR 57 (71)
T 2da7_A 15 DHMSVLKAYYAMNMEPNSDELLKISIAVG--LPQEFVKEWFEQRK 57 (71)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHHHT--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHhC--CCHHHHHHHHhhcc
Confidence 56788999999999999999999999996 89888888776543
No 84
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=48.22 E-value=47 Score=20.65 Aligned_cols=54 Identities=7% Similarity=0.068 Sum_probs=41.3
Q ss_pred CCHHHHHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHh
Q 034673 1 MDPEQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYDRLVEDLIFIES 56 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~~LveDV~~IEs 56 (87)
.|.+|-..||.++..-+--+..+=+.+|..++ -|..+|+-=|..----.+..|.
T Consensus 18 ~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lg--Lte~qVkvWFqNRR~k~rk~~~ 71 (89)
T 2ecb_A 18 KTAEQLRVLQASFLNSSVLTDEELNRLRAQTK--LTRREIDAWFTEKKKSKALKEE 71 (89)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHSCCS
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhC--cChHHCeecccccchHHHHHHH
Confidence 47889999999998877666666678999885 9999999988766544444443
No 85
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=47.99 E-value=26 Score=22.92 Aligned_cols=30 Identities=23% Similarity=0.307 Sum_probs=25.3
Q ss_pred CCCChHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 034673 18 KDTPDRWQNVARAVGGGKSPDDVKRHYDRLVE 49 (87)
Q Consensus 18 ~~tpdRWekIA~~VpgGKS~~evk~hY~~Lve 49 (87)
++.+-.|..||+.++ -|...|.+|.+.|.+
T Consensus 14 ~~~~~s~~~la~~lg--~s~~tv~~rl~~L~~ 43 (162)
T 3i4p_A 14 EDSTLAVADLAKKVG--LSTTPCWRRIQKMEE 43 (162)
T ss_dssp TCSCSCHHHHHHHHT--CCHHHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHC--cCHHHHHHHHHHHHH
Confidence 344557999999996 999999999999964
No 86
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=47.55 E-value=19 Score=23.28 Aligned_cols=36 Identities=25% Similarity=0.455 Sum_probs=28.6
Q ss_pred hHHHHHHHHcCCCCC----HHHHHHHHHHHHHHHHHHHhCC
Q 034673 22 DRWQNVARAVGGGKS----PDDVKRHYDRLVEDLIFIESAQ 58 (87)
Q Consensus 22 dRWekIA~~VpgGKS----~~evk~hY~~LveDV~~IEsg~ 58 (87)
..|..||..++ -.+ ...++.+|...+.......+|.
T Consensus 62 ~~W~~Va~~lg-~~~~~~a~~~Lk~~Y~k~L~~yE~~~~~~ 101 (117)
T 2jrz_A 62 RRWARVAQRLN-YPPGKNIGSLLRSHYERIVYPYEMYQSGA 101 (117)
T ss_dssp TTHHHHHHHTT-CCTTCTHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred CcHHHHHHHhC-CCCCCcHHHHHHHHHHHHHHHHHHHHhcC
Confidence 57999999986 332 6789999998888888777664
No 87
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.43 E-value=40 Score=19.63 Aligned_cols=44 Identities=9% Similarity=0.208 Sum_probs=36.0
Q ss_pred CCHHHHHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHH
Q 034673 1 MDPEQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYDR 46 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~~ 46 (87)
+|.+|-..||.++..-+.-+...=+.||..+. -|...|+.=|..
T Consensus 14 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~--l~~~qV~~WFqN 57 (80)
T 2dmq_A 14 FKHHQLRTMKSYFAINHNPDAKDLKQLAQKTG--LTKRVLQVWFQN 57 (80)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTC--CCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhC--CCHHHhhHccHH
Confidence 58899999999998877666666788999885 999999877753
No 88
>2wh5_A Acyl-COA-binding domain-containing protein 4; alternative splicing, fatty acid metabolism, lipid transport, lipid binding protein; HET: STE ST9 COA; 2.60A {Homo sapiens}
Probab=47.40 E-value=26 Score=22.72 Aligned_cols=29 Identities=14% Similarity=0.265 Sum_probs=22.4
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Q 034673 23 RWQNVARAVGGGKSPDDVKRHYDRLVEDLIF 53 (87)
Q Consensus 23 RWekIA~~VpgGKS~~evk~hY~~LveDV~~ 53 (87)
.|+--.+ +. |.|.+|.++.|-.|++.+..
T Consensus 65 Kw~AW~~-l~-gms~eeA~~~YI~~v~~l~~ 93 (106)
T 2wh5_A 65 KWDAWNS-LG-KMSREEAMSAYITEMKLVAQ 93 (106)
T ss_dssp HHHHHHT-TT-TCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-hc-CCCHHHHHHHHHHHHHHHHH
Confidence 4554433 56 89999999999999988764
No 89
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=47.23 E-value=35 Score=18.85 Aligned_cols=43 Identities=12% Similarity=0.161 Sum_probs=34.6
Q ss_pred CCHHHHHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHH
Q 034673 1 MDPEQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYD 45 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~ 45 (87)
+|.+|-..+|.++..-+--+...=+.+|..++ -|...|+.=|.
T Consensus 8 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~--l~~~qV~~WFq 50 (60)
T 1jgg_A 8 FTRDQLGRLEKEFYKENYVSRPRRCELAAQLN--LPESTIKVWFQ 50 (60)
T ss_dssp CCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHT--SCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHC--cCHHHHHHhhH
Confidence 58899999999998877656666688999985 89998886654
No 90
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=47.04 E-value=15 Score=25.14 Aligned_cols=41 Identities=24% Similarity=0.454 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhhcCCCCCh----HHHHHHHHcCCCCCHHHHHHHHH
Q 034673 4 EQNKKFERALAVYDKDTPD----RWQNVARAVGGGKSPDDVKRHYD 45 (87)
Q Consensus 4 eenK~FE~ALa~~~~~tpd----RWekIA~~VpgGKS~~evk~hY~ 45 (87)
.+..+||-.+|..--+-.. -=..||..+- |||++|+++.|.
T Consensus 102 d~~~LfeLi~AAnyLdIk~Lldl~c~~vA~~ik-gktpeeiR~~f~ 146 (169)
T 3v7d_A 102 DQEMLYEIILAANYLNIKPLLDAGCKVVAEMIR-GRSPEEIRRTFN 146 (169)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT-TCCHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHc-CCCHHHHHHHcC
Confidence 3567888888886544432 2367899999 999999999875
No 91
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=45.63 E-value=40 Score=19.12 Aligned_cols=43 Identities=5% Similarity=0.094 Sum_probs=34.6
Q ss_pred CCHHHHHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHH
Q 034673 1 MDPEQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYD 45 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~ 45 (87)
+|.+|-..||.++..-+--+...=+.||..+. -|...|+.=|.
T Consensus 14 ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~--l~~~qV~~WFq 56 (70)
T 2da2_A 14 FTDYQLRVLQDFFDANAYPKDDEFEQLSNLLN--LPTRVIVVWFQ 56 (70)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSC--CCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhC--CCHHHhHHhhH
Confidence 58899999999998877656666678899885 89998887664
No 92
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=45.26 E-value=40 Score=18.96 Aligned_cols=43 Identities=12% Similarity=0.207 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHH
Q 034673 1 MDPEQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYD 45 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~ 45 (87)
+|.+|-..||.++..-+--++..=+.+|..++ -|...|+.=|.
T Consensus 10 ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~--l~~~qV~~WFq 52 (66)
T 1bw5_A 10 LNEKQLHTLRTCYAANPRPDALMKEQLVEMTG--LSPRVIRVWFQ 52 (66)
T ss_dssp CSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHT--SCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHC--cCHHHHHHHhH
Confidence 58899999999998876655566678899885 89988886654
No 93
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=45.16 E-value=46 Score=19.68 Aligned_cols=45 Identities=11% Similarity=0.256 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 034673 3 PEQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYDRLVE 49 (87)
Q Consensus 3 ~eenK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~~Lve 49 (87)
.+.+...-.+|..-+++.+-.=..||..++ .|...|.+|-..|.+
T Consensus 13 ~~~~~~IL~~L~~~~~~~~~t~~eLA~~Lg--vs~~tV~~~L~~L~~ 57 (77)
T 1qgp_A 13 QDQEQRILKFLEELGEGKATTAHDLSGKLG--TPKKEINRVLYSLAK 57 (77)
T ss_dssp HHHHHHHHHHHHHHCSSSCEEHHHHHHHHC--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCcCHHHHHHHHC--cCHHHHHHHHHHHHH
Confidence 344344447788877655666788999996 999999999888864
No 94
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=44.98 E-value=58 Score=20.72 Aligned_cols=42 Identities=14% Similarity=0.228 Sum_probs=31.1
Q ss_pred CHHHHHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 034673 2 DPEQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYDRLVE 49 (87)
Q Consensus 2 T~eenK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~~Lve 49 (87)
+..+.+.+ .+|... .+-.|..||+.++ -|..-|.+|.+.|.+
T Consensus 6 d~~~~~il-~~L~~~---~~~s~~ela~~lg--~s~~tv~~~l~~L~~ 47 (151)
T 2cyy_A 6 DEIDKKII-KILQND---GKAPLREISKITG--LAESTIHERIRKLRE 47 (151)
T ss_dssp CHHHHHHH-HHHHHC---TTCCHHHHHHHHC--SCHHHHHHHHHHHHH
T ss_pred CHHHHHHH-HHHHHc---CCCCHHHHHHHHC--cCHHHHHHHHHHHHH
Confidence 44455544 466654 3456999999996 999999999999954
No 95
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=44.31 E-value=43 Score=19.09 Aligned_cols=43 Identities=16% Similarity=0.285 Sum_probs=34.7
Q ss_pred CCHHHHHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHH
Q 034673 1 MDPEQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYD 45 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~ 45 (87)
+|.+|-..||.++..-+--+...=+.+|..+. -|...|+.=|.
T Consensus 14 ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~--l~~~qV~~WFq 56 (70)
T 2e1o_A 14 FSNDQTIELEKKFETQKYLSPPERKRLAKMLQ--LSERQVKTWFQ 56 (70)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTT--CCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHC--CCHHHhhHhhH
Confidence 58899999999998876655666678899885 99999987664
No 96
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=44.03 E-value=44 Score=19.07 Aligned_cols=43 Identities=19% Similarity=0.234 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHH
Q 034673 1 MDPEQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYD 45 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~ 45 (87)
+|.+|-..||.++..-+--+...=+.||..+. -|...|+.=|.
T Consensus 14 ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~--l~~~qV~~WFq 56 (70)
T 2cra_A 14 YSKGQLRELEREYAANKFITKDKRRKISAATS--LSERQITIWFQ 56 (70)
T ss_dssp SCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTC--CCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHC--CCHHHhhHhhH
Confidence 58899999999998876555566688899885 99999887664
No 97
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=43.43 E-value=44 Score=18.94 Aligned_cols=43 Identities=9% Similarity=0.259 Sum_probs=34.7
Q ss_pred CCHHHHHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHH
Q 034673 1 MDPEQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYD 45 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~ 45 (87)
+|.+|-..||.++..-+--+...=+.||..++ -|...|+.=|.
T Consensus 14 ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~--l~~~qV~~WFq 56 (70)
T 2da1_A 14 ITDDQLRVLRQYFDINNSPSEEQIKEMADKSG--LPQKVIKHWFR 56 (70)
T ss_dssp CCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHC--CCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhC--CCHHHHHHHhh
Confidence 58899999999998866555666788999985 99999887664
No 98
>1i6z_A BAG-family molecular chaperone regulator-1; triple helix bundle; NMR {Mus musculus} SCOP: a.7.7.1
Probab=42.80 E-value=17 Score=25.12 Aligned_cols=35 Identities=14% Similarity=0.261 Sum_probs=29.1
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhCCCC
Q 034673 23 RWQNVARAVGGGKSPDDVKRHYDRLVEDLIFIESAQFP 60 (87)
Q Consensus 23 RWekIA~~VpgGKS~~evk~hY~~LveDV~~IEsg~v~ 60 (87)
-|-++. .|- ||++.+..+|..+-.++..||.|.++
T Consensus 19 ~lKkL~-dve--ksv~~~~k~l~~l~~el~~iekGFL~ 53 (135)
T 1i6z_A 19 ELKKLK-DLE--VSAEKIANHLQELNKELSGIQQGFLA 53 (135)
T ss_dssp HHHHHH-HHH--HHHHHHHHHHHHHHHHHHHHHTSSSC
T ss_pred HHHHHH-HHH--HHHHHHHHHHHHHHHHHHHHHhcchh
Confidence 466544 365 88999999999999999999999865
No 99
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=42.60 E-value=50 Score=19.31 Aligned_cols=52 Identities=12% Similarity=-0.039 Sum_probs=39.2
Q ss_pred CCHHHHHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Q 034673 1 MDPEQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYDRLVEDLIFI 54 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~~LveDV~~I 54 (87)
+|.+|-..||.++..-+.-+...=+.||..+. -|...|+.=|..--.-.+..
T Consensus 14 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~--l~~~qV~~WFqNRR~k~rk~ 65 (80)
T 2dms_A 14 FTRAQLDVLEALFAKTRYPDIFMREEVALKIN--LPESRVQVWFKNRRAKCRQQ 65 (80)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTT--CCHHHHHHHHHHHHTHHHHT
T ss_pred CCHHHHHHHHHHHHccCCCCHHHHHHHHHHHC--cCHHHhhhhhHHHhHHhhHH
Confidence 58899999999998876655666678899885 99999998876544333433
No 100
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=42.48 E-value=59 Score=20.12 Aligned_cols=42 Identities=21% Similarity=0.312 Sum_probs=31.0
Q ss_pred CHHHHHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 034673 2 DPEQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYDRLVE 49 (87)
Q Consensus 2 T~eenK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~~Lve 49 (87)
+..+.+.+. +|... .+-.+..||+.++ -|..-|.++.+.|.+
T Consensus 3 d~~~~~il~-~L~~~---~~~~~~ela~~lg--~s~~tv~~~l~~L~~ 44 (141)
T 1i1g_A 3 DERDKIILE-ILEKD---ARTPFTEIAKKLG--ISETAVRKRVKALEE 44 (141)
T ss_dssp CSHHHHHHH-HHHHC---TTCCHHHHHHHHT--SCHHHHHHHHHHHHH
T ss_pred CHHHHHHHH-HHHHc---CCCCHHHHHHHHC--cCHHHHHHHHHHHHH
Confidence 444555554 66643 3446999999995 999999999999964
No 101
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=42.35 E-value=14 Score=24.80 Aligned_cols=20 Identities=30% Similarity=0.782 Sum_probs=17.4
Q ss_pred HHHHHHcCCCCCHHHHHHHHH
Q 034673 25 QNVARAVGGGKSPDDVKRHYD 45 (87)
Q Consensus 25 ekIA~~VpgGKS~~evk~hY~ 45 (87)
..||..+- |||.+|+++-|.
T Consensus 119 ~~vA~~ik-gkt~eeir~~f~ 138 (160)
T 2p1m_A 119 QTVADMIK-GKTPEEIRTTFN 138 (160)
T ss_dssp HHHHHTTT-TCCHHHHHHHTT
T ss_pred HHHHHHHc-CCCHHHHHHHcC
Confidence 47899999 899999998775
No 102
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=42.26 E-value=63 Score=20.40 Aligned_cols=41 Identities=12% Similarity=0.220 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 034673 3 PEQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYDRLVE 49 (87)
Q Consensus 3 ~eenK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~~Lve 49 (87)
.-+.+.+ .+|... .+-.|..||+.++ -|..-|.++.+.|.+
T Consensus 9 ~~d~~il-~~L~~~---~~~s~~ela~~lg--~s~~tv~~~l~~L~~ 49 (151)
T 2dbb_A 9 RVDMQLV-KILSEN---SRLTYRELADILN--TTRQRIARRIDKLKK 49 (151)
T ss_dssp HHHHHHH-HHHHHC---TTCCHHHHHHHTT--SCHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHc---CCCCHHHHHHHHC--cCHHHHHHHHHHHHH
Confidence 3444444 466553 4456999999996 999999999999954
No 103
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=42.22 E-value=43 Score=18.42 Aligned_cols=43 Identities=16% Similarity=0.259 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHH
Q 034673 1 MDPEQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYD 45 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~ 45 (87)
+|.+|-..||.++...+--++..=+.+|..++ -|...|..=|.
T Consensus 12 ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~--l~~~qV~~WFq 54 (61)
T 1akh_A 12 ISPQARAFLEEVFRRKQSLNSKEKEEVAKKCG--ITPLQVRVWFI 54 (61)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHT--SCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHC--cCHHHHHHHHH
Confidence 58889999999999877666666688899885 89888876553
No 104
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=42.21 E-value=51 Score=19.32 Aligned_cols=43 Identities=12% Similarity=0.156 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHH
Q 034673 1 MDPEQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYD 45 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~ 45 (87)
+|.+|...||.++..-+--+...=+.||..++ -|...|+.=|.
T Consensus 25 ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~--l~~~qV~~WFq 67 (81)
T 1fjl_A 25 FSASQLDELERAFERTQYPDIYTREELAQRTN--LTEARIQVWFQ 67 (81)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHT--CCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHC--cCHHHHHHHHH
Confidence 57899999999998866555555678899885 99999887664
No 105
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=42.17 E-value=44 Score=19.33 Aligned_cols=43 Identities=19% Similarity=0.246 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHH
Q 034673 1 MDPEQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYD 45 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~ 45 (87)
+|.+|-..||.++..-+.-+...=+.||..+. -|...|+.=|.
T Consensus 24 ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~--l~~~qV~~WFq 66 (80)
T 2da3_A 24 ITPEQLEILYQKYLLDSNPTRKMLDHIAHEVG--LKKRVVQVWFQ 66 (80)
T ss_dssp CCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHT--SCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHC--cCHHHhHHHhH
Confidence 47788889999988766555555678999985 89988887664
No 106
>3flv_A Acyl-COA-binding domain-containing protein 5; lipid binding, structural genomics, struct genomics consortium, SGC, lipid-binding, membrane; HET: STE COA; 1.70A {Homo sapiens}
Probab=41.37 E-value=32 Score=22.96 Aligned_cols=21 Identities=14% Similarity=0.343 Sum_probs=18.6
Q ss_pred cCCCCCHHHHHHHHHHHHHHHH
Q 034673 31 VGGGKSPDDVKRHYDRLVEDLI 52 (87)
Q Consensus 31 VpgGKS~~evk~hY~~LveDV~ 52 (87)
+. |.|.+|.|+.|-.+++.+.
T Consensus 88 l~-gmS~eeAm~~YI~~v~~l~ 108 (119)
T 3flv_A 88 LG-DMTKEEAMIAYVEEMKKII 108 (119)
T ss_dssp TT-TCCHHHHHHHHHHHHHHHH
T ss_pred cc-CCCHHHHHHHHHHHHHHHH
Confidence 56 8999999999999998765
No 107
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=41.29 E-value=20 Score=23.10 Aligned_cols=31 Identities=16% Similarity=0.224 Sum_probs=24.6
Q ss_pred hHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Q 034673 22 DRWQNVARAVGGGKSPDDVKRHYDRLVEDLIF 53 (87)
Q Consensus 22 dRWekIA~~VpgGKS~~evk~hY~~LveDV~~ 53 (87)
..|..||..++ -.+...++.+|...+.....
T Consensus 71 ~~W~~Va~~lg-~~~~~~Lr~~Y~k~L~~yE~ 101 (116)
T 2li6_A 71 QQWSMVAQRLQ-ISDYQQLESIYFRILLPYER 101 (116)
T ss_dssp TCHHHHHHHHT-SCCTTHHHHHHHHHHSHHHH
T ss_pred CcHHHHHHHhC-CChHHHHHHHHHHHHHHHHH
Confidence 47999999998 55578999999877655543
No 108
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.22 E-value=53 Score=19.24 Aligned_cols=43 Identities=19% Similarity=0.163 Sum_probs=34.6
Q ss_pred CCHHHHHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHH
Q 034673 1 MDPEQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYD 45 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~ 45 (87)
+|.+|-..||.++..-+--+...=+.||..+. -|...|+.=|.
T Consensus 24 ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~--L~~~qV~vWFq 66 (80)
T 2dmt_A 24 FTELQLMGLEKRFEKQKYLSTPDRIDLAESLG--LSQLQVKTWYQ 66 (80)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhC--CCHHHeeeccH
Confidence 58899999999998876555566678899885 99999887664
No 109
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=40.67 E-value=55 Score=19.26 Aligned_cols=43 Identities=16% Similarity=0.190 Sum_probs=33.8
Q ss_pred CCHHHHHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHH
Q 034673 1 MDPEQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYD 45 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~ 45 (87)
||..|...+|.+...-+--+...=..+|..++ -|...|+.=|.
T Consensus 11 ~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~--Lte~qVqvWFq 53 (69)
T 2l9r_A 11 MSHTQVIELERKFSHQKYLSAPERAHLAKNLK--LTETQVKIWFQ 53 (69)
T ss_dssp CCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTT--CCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhC--CChhheeecch
Confidence 78999999999998766544444567898885 99999887664
No 110
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=40.55 E-value=49 Score=18.63 Aligned_cols=44 Identities=14% Similarity=0.171 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHH
Q 034673 1 MDPEQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYDR 46 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~~ 46 (87)
+|.+|-..+|.++..-+--++..=+.+|..++ -|...|+.=|..
T Consensus 8 ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~--l~~~qV~~WFqN 51 (67)
T 2k40_A 8 FTQNQIEVLENVFRVNCYPGIDILEDLAQKLN--LELDRIQIWFQN 51 (67)
T ss_dssp CCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHT--CCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHC--cCHHHhhHhhHh
Confidence 58899999999988766555666688999885 999998876643
No 111
>3qf7_D MRE11; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima}
Probab=40.42 E-value=26 Score=20.32 Aligned_cols=25 Identities=12% Similarity=0.290 Sum_probs=18.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhCCC
Q 034673 35 KSPDDVKRHYDRLVEDLIFIESAQF 59 (87)
Q Consensus 35 KS~~evk~hY~~LveDV~~IEsg~v 59 (87)
+.-+-+.+-+++|++.|+.-|+|+.
T Consensus 22 ~~he~l~k~~~ell~evkkseaghh 46 (50)
T 3qf7_D 22 ENHEKLLKILDELLDEVKKSEAGHH 46 (50)
T ss_dssp TTHHHHHHHHHHHHHHHHHC-----
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccc
Confidence 5678889999999999999999864
No 112
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=39.92 E-value=54 Score=19.84 Aligned_cols=43 Identities=9% Similarity=0.244 Sum_probs=31.9
Q ss_pred HHHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Q 034673 5 QNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYDRLVED 50 (87)
Q Consensus 5 enK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~~LveD 50 (87)
+++++ .+|...+.+.+-.=..||..++ .|...|.+|-..|.++
T Consensus 12 ~~~IL-~~L~~~~pg~~~t~~eLA~~Lg--vsr~tV~~~L~~Le~~ 54 (81)
T 1qbj_A 12 EQRIL-KFLEELGEGKATTAHDLSGKLG--TPKKEINRVLYSLAKK 54 (81)
T ss_dssp HHHHH-HHHHHHCTTCCBCHHHHHHHHT--CCHHHHHHHHHHHHHT
T ss_pred HHHHH-HHHHHcCCCCCcCHHHHHHHHC--cCHHHHHHHHHHHHHC
Confidence 33433 6677767555666788999996 9999999998888653
No 113
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=39.90 E-value=56 Score=19.13 Aligned_cols=43 Identities=9% Similarity=0.112 Sum_probs=34.0
Q ss_pred CCHHHHHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHH
Q 034673 1 MDPEQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYD 45 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~ 45 (87)
+|.+|-..||.++..-+--+...=+.||..+. -|...|+.=|.
T Consensus 14 ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~--l~~~qV~vWFq 56 (80)
T 2cue_A 14 FTQEQIEALEKEFERTHYPDVFARERLAAKID--LPEARIQVWFS 56 (80)
T ss_dssp SCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTT--CCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhccCCCCHHHHHHHHHHhC--CCHHHhhHHHH
Confidence 57889999999988766555566678899885 99999987664
No 114
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=38.77 E-value=54 Score=18.60 Aligned_cols=43 Identities=14% Similarity=0.145 Sum_probs=34.7
Q ss_pred CCHHHHHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHH
Q 034673 1 MDPEQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYD 45 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~ 45 (87)
+|.+|-..||.++..-+--+...-+.||..++ -|...|+.=|.
T Consensus 9 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~--l~~~qV~~WFq 51 (68)
T 1zq3_P 9 FTSSQIAELEQHFLQGRYLTAPRLADLSAKLA--LGTAQVKIWFK 51 (68)
T ss_dssp CCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHT--SCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhC--cCHHHhhHhhH
Confidence 58889999999988866556666788999985 99999887664
No 115
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=38.11 E-value=55 Score=18.51 Aligned_cols=43 Identities=9% Similarity=0.108 Sum_probs=34.0
Q ss_pred CCHHHHHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHH
Q 034673 1 MDPEQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYD 45 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~ 45 (87)
+|.+|-..||.++..-+--+...=+.+|..++ -|...|+.=|.
T Consensus 10 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~--l~~~qV~~WFq 52 (68)
T 1yz8_P 10 FTSQQLQQLEATFQRNRYPDMSTREEIAVWTN--LTEARVRVWFK 52 (68)
T ss_dssp CCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTT--SCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCCCHHHHHHHHHHHC--cCHHHHHHHHH
Confidence 57889999999998866555555678999885 99999987664
No 116
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=38.03 E-value=51 Score=18.13 Aligned_cols=43 Identities=12% Similarity=0.158 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHH
Q 034673 1 MDPEQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYD 45 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~ 45 (87)
+|.+|...+|.++..-+--+...=+.+|..++ -|...|+.=|.
T Consensus 6 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~--l~~~qV~~WFq 48 (60)
T 3a02_A 6 FTSFQLEELEKAFSRTHYPDVFTREELAMKIG--LTEARIQVWFQ 48 (60)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHT--SCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHC--cCHHHHHHHhh
Confidence 58899999999998866544555577899885 89998886664
No 117
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=37.85 E-value=35 Score=23.31 Aligned_cols=43 Identities=21% Similarity=0.213 Sum_probs=25.0
Q ss_pred HHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 034673 6 NKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYDRLV 48 (87)
Q Consensus 6 nK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~~Lv 48 (87)
-..|++||...+.+.+.-|...+...-.-...++.+..|+..+
T Consensus 84 ~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 126 (308)
T 2ond_A 84 ANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLL 126 (308)
T ss_dssp HHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3567788875555556677776654321234556666665544
No 118
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=37.84 E-value=20 Score=23.86 Aligned_cols=40 Identities=28% Similarity=0.488 Sum_probs=25.7
Q ss_pred HHHHHHHHHhhcCCCCChH----HHHHHHHcCCCCCHHHHHHHHH
Q 034673 5 QNKKFERALAVYDKDTPDR----WQNVARAVGGGKSPDDVKRHYD 45 (87)
Q Consensus 5 enK~FE~ALa~~~~~tpdR----WekIA~~VpgGKS~~evk~hY~ 45 (87)
+.-+|+-.+|..--+-..- =..||..+- |||.+|+++.|.
T Consensus 96 ~~~l~eLl~AAnyL~I~~Lld~~c~~va~~i~-gkt~eeir~~f~ 139 (159)
T 2ast_A 96 QGTLFELILAANYLDIKGLLDVTCKTVANMIK-GKTPEEIRKTFN 139 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHS-SCCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCCHHHHHHHcC
Confidence 4456666666532222111 146889999 899999998875
No 119
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=37.71 E-value=59 Score=18.75 Aligned_cols=43 Identities=21% Similarity=0.209 Sum_probs=34.4
Q ss_pred CCHHHHHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHH
Q 034673 1 MDPEQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYD 45 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~ 45 (87)
+|.+|-..||.++..-+--+...=+.+|..++ -|...|+.=|.
T Consensus 14 ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~--l~~~qV~vWFq 56 (73)
T 2l7z_A 14 YTKVQLKELEREYATNKFITKDKRRRISATTN--LSERQVTIWFQ 56 (73)
T ss_dssp SCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHT--SCSHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHC--CCHHHHHHHHH
Confidence 57899999999998877656666678899885 88888887664
No 120
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.91 E-value=61 Score=18.41 Aligned_cols=43 Identities=14% Similarity=0.128 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHH
Q 034673 1 MDPEQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYD 45 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~ 45 (87)
+|.+|-..||.++..-+--+...=+.+|..+. -|...|+.=|.
T Consensus 14 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~--l~~~qV~~WFq 56 (70)
T 2djn_A 14 YSSFQLAALQRRFQKTQYLALPERAELAASLG--LTQTQVKIWFQ 56 (70)
T ss_dssp SCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSS--CCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhC--CCHHHHHHHHH
Confidence 58899999999988766545555578888885 99999887664
No 121
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=34.72 E-value=78 Score=19.26 Aligned_cols=45 Identities=9% Similarity=0.136 Sum_probs=37.3
Q ss_pred CCHHHHHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHH
Q 034673 1 MDPEQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYDRL 47 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~~L 47 (87)
+|.+|-..||.++..-+--++..=+.||..++ -|..+|+.=|..-
T Consensus 10 fT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tg--Lte~qIkvWFqNr 54 (76)
T 2ecc_A 10 KTKEQLAILKSFFLQCQWARREDYQKLEQITG--LPRPEIIQWFGDT 54 (76)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTC--CCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHC--cCHHHhhHHhHhh
Confidence 58899999999999877666667778999885 9999999877544
No 122
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=34.58 E-value=88 Score=19.79 Aligned_cols=42 Identities=17% Similarity=0.318 Sum_probs=30.5
Q ss_pred CHHHHHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 034673 2 DPEQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYDRLVE 49 (87)
Q Consensus 2 T~eenK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~~Lve 49 (87)
+..+.+.+ .+|... .+-.+..||+.++ -|..-|.+|.+.|.+
T Consensus 7 d~~d~~il-~~L~~~---~~~s~~ela~~lg--~s~~tv~~~l~~L~~ 48 (152)
T 2cg4_A 7 DNLDRGIL-EALMGN---ARTAYAELAKQFG--VSPETIHVRVEKMKQ 48 (152)
T ss_dssp CHHHHHHH-HHHHHC---TTSCHHHHHHHHT--SCHHHHHHHHHHHHH
T ss_pred CHHHHHHH-HHHHHc---CCCCHHHHHHHHC--cCHHHHHHHHHHHHH
Confidence 34444444 456554 3456999999996 999999999999954
No 123
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=34.38 E-value=62 Score=18.00 Aligned_cols=43 Identities=12% Similarity=0.113 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHH
Q 034673 1 MDPEQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYD 45 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~ 45 (87)
+|.+|-..||.++..-+--+...=+.+|..++ -|...|+.=|.
T Consensus 10 ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~--l~~~qV~~WFq 52 (63)
T 2h1k_A 10 YTRAQLLELEKEFLFNKYISRPRRVELAVMLN--LTERHIKIWFQ 52 (63)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHT--CCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhC--cCHHHhhHHHH
Confidence 58899999999998866555566678899885 89999886654
No 124
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=33.45 E-value=64 Score=17.89 Aligned_cols=43 Identities=9% Similarity=0.200 Sum_probs=31.6
Q ss_pred CCHHHHHHHHHHH---hhcCCCCChHHHHHHHHcCCCCCHHHHHHHHH
Q 034673 1 MDPEQNKKFERAL---AVYDKDTPDRWQNVARAVGGGKSPDDVKRHYD 45 (87)
Q Consensus 1 ~T~eenK~FE~AL---a~~~~~tpdRWekIA~~VpgGKS~~evk~hY~ 45 (87)
+|.++...+|..+ ...+--+++.=+.+|..++ -|..+|..=|.
T Consensus 10 ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~--L~~~qV~~WFq 55 (64)
T 1du6_A 10 MNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCG--ITVSQVSNWFG 55 (64)
T ss_dssp STTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHT--SCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHC--cCHHHHHHHHH
Confidence 4678889999999 4445445555678898885 89988876553
No 125
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=33.22 E-value=30 Score=21.21 Aligned_cols=24 Identities=21% Similarity=0.440 Sum_probs=19.1
Q ss_pred CHHHHHHHHHHHHHHHHHH---HhCCC
Q 034673 36 SPDDVKRHYDRLVEDLIFI---ESAQF 59 (87)
Q Consensus 36 S~~evk~hY~~LveDV~~I---Esg~v 59 (87)
|.++++++|..+.+||+.. .-|.|
T Consensus 28 ~~~~l~~~f~~~~edl~~~f~~~~G~V 54 (104)
T 1jmt_A 28 SDVEMQEHYDEFFEEVFTEMEEKYGEV 54 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCE
T ss_pred CHHHHHHHHHHHHHHHHHHhhccCCce
Confidence 6788999999999999873 34664
No 126
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A
Probab=32.97 E-value=64 Score=17.71 Aligned_cols=45 Identities=20% Similarity=0.419 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHHHhhcCCCC-----ChHHHHHHHHcCCCCCHHHHHHHHHH
Q 034673 1 MDPEQNKKFERALAVYDKDT-----PDRWQNVARAVGGGKSPDDVKRHYDR 46 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~t-----pdRWekIA~~VpgGKS~~evk~hY~~ 46 (87)
+|+++.+.+..++..|+.+. .+-+..+-..++ .-|.+++..-+..
T Consensus 5 ~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g-~~~~~~~~~~~~~ 54 (86)
T 2opo_A 5 DTPQDIADRERIFKRFDTNGDGKISSSELGDALKTLG-SVTPDEVRRMMAE 54 (86)
T ss_dssp -CHHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHTTT-TCCHHHHHHHHHH
T ss_pred CCHhhHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHcC-CCCHHHHHHHHHH
Confidence 57889999999999998764 345666666665 5777777655543
No 127
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=32.68 E-value=99 Score=19.82 Aligned_cols=42 Identities=19% Similarity=0.178 Sum_probs=30.6
Q ss_pred CHHHHHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 034673 2 DPEQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYDRLVE 49 (87)
Q Consensus 2 T~eenK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~~Lve 49 (87)
+..+.+.+ .+|+..+ +-.+..||+.++ -|..-|.+|.+.|.+
T Consensus 9 d~~~~~il-~~L~~~~---~~s~~ela~~lg--~s~~tv~~~l~~L~~ 50 (162)
T 2p5v_A 9 DKTDIKIL-QVLQENG---RLTNVELSERVA--LSPSPCLRRLKQLED 50 (162)
T ss_dssp CHHHHHHH-HHHHHCT---TCCHHHHHHHHT--SCHHHHHHHHHHHHH
T ss_pred CHHHHHHH-HHHHHcC---CCCHHHHHHHHC--cCHHHHHHHHHHHHH
Confidence 34444444 3666543 346899999996 999999999999954
No 128
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=32.56 E-value=80 Score=18.75 Aligned_cols=43 Identities=9% Similarity=0.005 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHHHhhc---CCCCChHHHHHHHHcCCCCCHHHHHHHHH
Q 034673 1 MDPEQNKKFERALAVY---DKDTPDRWQNVARAVGGGKSPDDVKRHYD 45 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~---~~~tpdRWekIA~~VpgGKS~~evk~hY~ 45 (87)
+|.++-..||..+..| +--+++.=+.||..++ -|..+|+.=|.
T Consensus 14 ~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~g--Ls~~qV~~WFq 59 (83)
T 2dmn_A 14 LPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTN--LSLLQISNWFI 59 (83)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHC--cCHHHhhHHhh
Confidence 5788999999999886 5555666778899885 99999987664
No 129
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=31.51 E-value=69 Score=18.30 Aligned_cols=40 Identities=13% Similarity=0.041 Sum_probs=30.7
Q ss_pred HHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHH
Q 034673 6 NKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYDR 46 (87)
Q Consensus 6 nK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~~ 46 (87)
...|+.-|..++-...-.|+.||..-. |-|..|+..-..+
T Consensus 9 ~~Il~~~l~~~~~~~~~dl~~la~~t~-G~SGADi~~l~~e 48 (78)
T 3kw6_A 9 LDILKIHSRKMNLTRGINLRKIAELMP-GASGAEVKGVCTE 48 (78)
T ss_dssp HHHHHHHHTTSEECTTCCHHHHHHTCT-TCCHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCccCHHHHHHHcC-CCCHHHHHHHHHH
Confidence 356777788777554456999999999 9999999875543
No 130
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=31.01 E-value=56 Score=21.90 Aligned_cols=48 Identities=19% Similarity=0.185 Sum_probs=35.3
Q ss_pred CCHHHHHHHHHHHhhcCC-CCChHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Q 034673 1 MDPEQNKKFERALAVYDK-DTPDRWQNVARAVGGGKSPDDVKRHYDRLVED 50 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~-~tpdRWekIA~~VpgGKS~~evk~hY~~LveD 50 (87)
||..|.+.++-.+....+ +.|-.-..||++++ -|..-|.+|-+.|+++
T Consensus 3 lt~~q~~il~~I~~~~~~~g~~~s~~eia~~lg--l~~~tv~~~l~~Le~~ 51 (196)
T 3k2z_A 3 LTERQRKVLLFIEEFIEKNGYPPSVREIARRFR--ITPRGALLHLIALEKK 51 (196)
T ss_dssp CCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHT--SCHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHHHHhCCCCCHHHHHHHcC--CCcHHHHHHHHHHHHC
Confidence 688899988887665432 33455788999996 6666788888888653
No 131
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=30.50 E-value=75 Score=17.80 Aligned_cols=41 Identities=7% Similarity=0.191 Sum_probs=17.5
Q ss_pred HHHHHHhhcCCCC--ChHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 034673 8 KFERALAVYDKDT--PDRWQNVARAVGGGKSPDDVKRHYDRLV 48 (87)
Q Consensus 8 ~FE~ALa~~~~~t--pdRWekIA~~VpgGKS~~evk~hY~~Lv 48 (87)
.|+.+|..+|... ++-|..+|.+.-.-.-.++.+..|+.++
T Consensus 61 ~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 103 (129)
T 2xev_A 61 QFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVA 103 (129)
T ss_dssp HHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555554332 3334444443321233444444444443
No 132
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=30.29 E-value=91 Score=18.66 Aligned_cols=56 Identities=13% Similarity=0.313 Sum_probs=35.6
Q ss_pred CCHHHHHHHHHHHhhcCCCC-----ChHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCCCC
Q 034673 1 MDPEQNKKFERALAVYDKDT-----PDRWQNVARAVGGGKSPDDVKRHYDRLVEDLIFIESAQFPLPNY 64 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~t-----pdRWekIA~~VpgGKS~~evk~hY~~LveDV~~IEsg~v~~P~y 64 (87)
||.+|-..+..++..|+.+. .+-+..+-..++-.-|..++..-+... +|.|.+..+
T Consensus 10 l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~--------~g~i~~~eF 70 (153)
T 2ovk_B 10 LSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAMLKEC--------PGQLNFTAF 70 (153)
T ss_dssp CCHHHHHHHHHHHHHHCCSTTTCCCHHHHHHHTTTTTSCCCHHHHHHHHHHS--------SSCCCSHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHhCCCCCHHHHHHHHHHc--------CCCCCHHHH
Confidence 68899999999999998643 344555444444335666666555443 676665433
No 133
>2c35_A Human RPB4, DNA-directed RNA polymerase II 16 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: a.60.8.2
Probab=30.05 E-value=99 Score=20.89 Aligned_cols=43 Identities=12% Similarity=0.011 Sum_probs=32.4
Q ss_pred CHHHHHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHH
Q 034673 2 DPEQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYDRL 47 (87)
Q Consensus 2 T~eenK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~~L 47 (87)
+++.-+.|..+|..|. -++.---.|++..| .|++|++--+..|
T Consensus 86 ~~e~~~~l~e~L~~~~-L~~~E~a~L~NL~P--~t~dEar~lipsl 128 (152)
T 2c35_A 86 NRETIASVRSLLLQKK-LHKFELACLANLCP--ETAEESKALIPSL 128 (152)
T ss_dssp SHHHHHHHHHHHHTSS-CCHHHHHHHHHHCC--SSHHHHHHHCGGG
T ss_pred CHHHHHHHHHHHHhcC-CCHHHHHHhccCCC--CCHHHHHHHHHhh
Confidence 4666778888888876 44555778999999 8999998665443
No 134
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=30.03 E-value=84 Score=18.19 Aligned_cols=44 Identities=16% Similarity=0.230 Sum_probs=35.0
Q ss_pred CCHHHHHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHH
Q 034673 1 MDPEQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYDR 46 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~~ 46 (87)
+|.+|-..||.++..-+--+...=+.||..++ -|...|+.=|..
T Consensus 16 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~--l~~~qV~~WFqN 59 (77)
T 1nk2_P 16 FTKAQTYELERRFRQQRYLSAPEREHLASLIR--LTPTQVKIWFQN 59 (77)
T ss_dssp CCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTT--CCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhC--CCHHHHHHHhHH
Confidence 58899999999998866555566678899885 999999877753
No 135
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.87 E-value=66 Score=18.76 Aligned_cols=45 Identities=7% Similarity=0.016 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHHHhhc----CCCCChHHHHHHHHcCCCCCHHHHHHHHHHH
Q 034673 1 MDPEQNKKFERALAVY----DKDTPDRWQNVARAVGGGKSPDDVKRHYDRL 47 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~----~~~tpdRWekIA~~VpgGKS~~evk~hY~~L 47 (87)
+|.+|-..||.++... +.-+...=+.||..++ -|...|+-=|.--
T Consensus 15 ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lg--L~~~qV~vWFqNr 63 (80)
T 2da4_A 15 FSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELN--VDCEIVRTWIGNR 63 (80)
T ss_dssp CCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHT--CCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhC--CCHHHhhHhHHHH
Confidence 5789999999998766 4333344577898885 9999998877543
No 136
>3ajb_B Peroxisomal biogenesis factor 19; all alpha, protein-protein complex, protein transport; 2.50A {Homo sapiens}
Probab=29.58 E-value=15 Score=21.50 Aligned_cols=17 Identities=35% Similarity=0.460 Sum_probs=13.7
Q ss_pred HHHHHHHHHHhhcCCCC
Q 034673 4 EQNKKFERALAVYDKDT 20 (87)
Q Consensus 4 eenK~FE~ALa~~~~~t 20 (87)
|=+.+++.||.-|++..
T Consensus 22 ELdeLLDSALeDFdKak 38 (49)
T 3ajb_B 22 ELEELLESALDDFDKAK 38 (49)
T ss_dssp HHHHHHHHHHTHHHHTS
T ss_pred HHHHHHHHHHHhhcccc
Confidence 44789999999998653
No 137
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=29.57 E-value=19 Score=22.70 Aligned_cols=42 Identities=26% Similarity=0.579 Sum_probs=28.5
Q ss_pred hHHHHHHHHcCCCCC----HHHHHHHHHHHHHHHHHHHhCC--CCCCC
Q 034673 22 DRWQNVARAVGGGKS----PDDVKRHYDRLVEDLIFIESAQ--FPLPN 63 (87)
Q Consensus 22 dRWekIA~~VpgGKS----~~evk~hY~~LveDV~~IEsg~--v~~P~ 63 (87)
..|..||..++...+ ...++.+|...+......-+|. .|+|.
T Consensus 55 ~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~yE~~~~~~~~~~~p~ 102 (107)
T 1ig6_A 55 RQWKHIYDELGGNPGSTSAATCTRRHYERLILPYERFIKGEEDKPLPP 102 (107)
T ss_dssp TTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTTTHHHHHHHTSSSSCT
T ss_pred CcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Confidence 479999999863222 3689999988776665554444 35553
No 138
>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A
Probab=29.50 E-value=99 Score=18.83 Aligned_cols=46 Identities=17% Similarity=0.354 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHHHhhcCCCC-----ChHHHHHHHHcCCCCCHHHHHHHHHH
Q 034673 1 MDPEQNKKFERALAVYDKDT-----PDRWQNVARAVGGGKSPDDVKRHYDR 46 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~t-----pdRWekIA~~VpgGKS~~evk~hY~~ 46 (87)
+|++|-+.|..|...|+.+. .+-+..+-..++..-+..++...+..
T Consensus 4 lt~eqi~el~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~ 54 (148)
T 2lmt_A 4 LTEEQIAEFKDAFVQFDKEGTGKIATRELGTLMRTLGQNPTEAELQDLIAE 54 (148)
T ss_dssp CCSHHHHHHHHHHHHHHCSSCCEEEGGGHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCCCeECHHHHHHHHHhcCCCchHHHHHHHHHh
Confidence 57899999999999998653 35566665555535677776655543
No 139
>3ejb_A Acyl carrier protein; protein-protein complex, cytochrome P450 fold, carrier protein, 4-helix bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Escherichia coli} SCOP: a.28.1.1 PDB: 3ejd_A* 3eje_A*
Probab=29.47 E-value=10 Score=23.26 Aligned_cols=38 Identities=5% Similarity=0.207 Sum_probs=20.3
Q ss_pred hHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhCCC
Q 034673 22 DRWQNVARAVGGGKSPDDVKRHYDRLVEDLIFIESAQF 59 (87)
Q Consensus 22 dRWekIA~~VpgGKS~~evk~hY~~LveDV~~IEsg~v 59 (87)
-+|...|...|...|..++..+...++.++..++...+
T Consensus 5 ~~~~~~~~~~~~~~t~~~i~~~l~~iia~~l~~~~~~i 42 (97)
T 3ejb_A 5 HHHHHSSGLVPRGSHMSTIEERVKKIIGEQLGVKQEEV 42 (97)
T ss_dssp -------------CCCCCHHHHHHHHHHHHSCCCTTTS
T ss_pred cCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCcCHHHC
Confidence 57999999999999999999999988888876655444
No 140
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=29.25 E-value=69 Score=17.00 Aligned_cols=43 Identities=16% Similarity=0.302 Sum_probs=28.3
Q ss_pred CCHHHHHHHHHHHhhcCCCC-----ChHHHHHHHHcCCCCCHHHHHHH
Q 034673 1 MDPEQNKKFERALAVYDKDT-----PDRWQNVARAVGGGKSPDDVKRH 43 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~t-----pdRWekIA~~VpgGKS~~evk~h 43 (87)
||.++...+..++..|+.+. .+-...+-..++-.-|..++..-
T Consensus 1 ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~ 48 (77)
T 2joj_A 1 LSEEQKQEIKEAFDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILEL 48 (77)
T ss_dssp CCHHHHHHHHHHHHHHCCSSSSEEEHHHHHHHHHHHTCCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHhCCCCCHHHHHHH
Confidence 68899999999999998754 24455555555423355555443
No 141
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=28.96 E-value=1.3e+02 Score=19.94 Aligned_cols=38 Identities=16% Similarity=0.246 Sum_probs=28.9
Q ss_pred HHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 034673 7 KKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYDRLVE 49 (87)
Q Consensus 7 K~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~~Lve 49 (87)
..+-.+|... .+-.|..||+.++ -|..-|.+|.+.|.+
T Consensus 30 ~~IL~~L~~~---~~~s~~eLA~~lg--lS~~tv~~rl~~L~~ 67 (171)
T 2e1c_A 30 KKIIKILQND---GKAPLREISKITG--LAESTIHERIRKLRE 67 (171)
T ss_dssp HHHHHHHHHC---TTCCHHHHHHHHT--SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc---CCCCHHHHHHHHC--cCHHHHHHHHHHHHH
Confidence 3344566654 3456899999996 999999999999954
No 142
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=28.96 E-value=91 Score=19.56 Aligned_cols=42 Identities=12% Similarity=0.173 Sum_probs=30.4
Q ss_pred CHHHHHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 034673 2 DPEQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYDRLVE 49 (87)
Q Consensus 2 T~eenK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~~Lve 49 (87)
+..+.+.+. +|+. +.+-.|..||+.++ -|..-|.+|.+.|.+
T Consensus 2 d~~~~~il~-~L~~---~~~~~~~ela~~lg--~s~~tv~~~l~~L~~ 43 (150)
T 2pn6_A 2 DEIDLRILK-ILQY---NAKYSLDEIAREIR--IPKATLSYRIKKLEK 43 (150)
T ss_dssp CHHHHHHHH-HHTT---CTTSCHHHHHHHHT--SCHHHHHHHHHHHHH
T ss_pred ChHHHHHHH-HHHH---cCCCCHHHHHHHHC--cCHHHHHHHHHHHHH
Confidence 344444443 5544 33567999999996 999999999999854
No 143
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.45 E-value=90 Score=18.01 Aligned_cols=44 Identities=11% Similarity=0.213 Sum_probs=35.2
Q ss_pred CCHHHHHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHH
Q 034673 1 MDPEQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYDR 46 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~~ 46 (87)
+|.+|-..||.++..-+--+...=+.+|..++ -|..+|+.=|..
T Consensus 15 ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~--l~~~qV~~WFqN 58 (76)
T 2dn0_A 15 KSHEQLSALKGSFCRNQFPGQSEVEHLTKVTG--LSTREVRKWFSD 58 (76)
T ss_dssp CCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhC--CChHHhhHHhHH
Confidence 58899999999998876555555678899885 999999877753
No 144
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=27.99 E-value=1.3e+02 Score=21.89 Aligned_cols=33 Identities=18% Similarity=0.390 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhhc-CCCCC-hHHHH----HHHHcCCCCC
Q 034673 4 EQNKKFERALAVY-DKDTP-DRWQN----VARAVGGGKS 36 (87)
Q Consensus 4 eenK~FE~ALa~~-~~~tp-dRWek----IA~~VpgGKS 36 (87)
.+.+.||.+|+.+ ..+.| +-|.+ +-...|.|.+
T Consensus 53 ~~r~~fE~~i~~~~~~dDPL~~w~~YIkW~ee~yP~g~~ 91 (223)
T 4aez_C 53 KERMGHERKIETSESLDDPLQVWIDYIKWTLDNFPQGET 91 (223)
T ss_dssp HHHHHHHHHHHHGGGSSCTHHHHHHHHHHHHHHCTTCCC
T ss_pred HHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCcCCCc
Confidence 3667899999996 45666 77755 5567786765
No 145
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=27.87 E-value=34 Score=20.16 Aligned_cols=42 Identities=14% Similarity=0.244 Sum_probs=27.3
Q ss_pred CCHHHHHHHHHHHhhcCCCCC-----hHHHHHHHHcCCCCCHHHHHHHH
Q 034673 1 MDPEQNKKFERALAVYDKDTP-----DRWQNVARAVGGGKSPDDVKRHY 44 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~tp-----dRWekIA~~VpgGKS~~evk~hY 44 (87)
||.+|.+.|..|+..|+.+.. +-...+-..+ |-+.+++.+-+
T Consensus 4 ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~--g~~~~~~~~i~ 50 (95)
T 1c07_A 4 VSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKT--GLPSTLLAHIW 50 (95)
T ss_dssp SCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTT--TCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHc--CCCHHHHHHHH
Confidence 678899999999999987542 2333333333 35666665544
No 146
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=26.14 E-value=52 Score=19.02 Aligned_cols=39 Identities=8% Similarity=0.003 Sum_probs=29.3
Q ss_pred HHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHH
Q 034673 6 NKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYD 45 (87)
Q Consensus 6 nK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~ 45 (87)
...|+.-|..++-...-.|+.||..-. |-|-.|+..-..
T Consensus 7 ~~Il~~~l~~~~~~~~vdl~~la~~t~-G~SGADi~~l~~ 45 (83)
T 3aji_B 7 RLIFSTITSKMNLSEEVDLEDYVARPD-KISGADINSICQ 45 (83)
T ss_dssp HHHHHHHHTTSCBCTTCCTHHHHTSSC-CCCHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCcccCHHHHHHHcC-CCCHHHHHHHHH
Confidence 346677777777544455999999999 999999987443
No 147
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=25.99 E-value=87 Score=17.06 Aligned_cols=43 Identities=14% Similarity=0.078 Sum_probs=33.0
Q ss_pred CCHHHHHHHHHHHhh---cCCCCChHHHHHHHHcCCCCCHHHHHHHHH
Q 034673 1 MDPEQNKKFERALAV---YDKDTPDRWQNVARAVGGGKSPDDVKRHYD 45 (87)
Q Consensus 1 ~T~eenK~FE~ALa~---~~~~tpdRWekIA~~VpgGKS~~evk~hY~ 45 (87)
+|.+|-..+|..+.. .+--+++.=+.+|..++ -|..+|..=|.
T Consensus 5 ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~g--l~~~qV~~WFq 50 (60)
T 1k61_A 5 FTKENVRILESWFAKNIENPYLDTKGLENLMKNTS--LSRIQIKNWVS 50 (60)
T ss_dssp CCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHC--cCHHHHHHHHH
Confidence 578899999999998 55445555577888885 89998877654
No 148
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=25.79 E-value=22 Score=22.08 Aligned_cols=13 Identities=15% Similarity=0.401 Sum_probs=6.4
Q ss_pred CHHHHHHHHHHHH
Q 034673 36 SPDDVKRHYDRLV 48 (87)
Q Consensus 36 S~~evk~hY~~Lv 48 (87)
|.+|+++.|..|+
T Consensus 29 s~~eIk~aYr~l~ 41 (109)
T 2qsa_A 29 DKQKLAKAYRALA 41 (109)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 4455555555443
No 149
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.78 E-value=91 Score=17.86 Aligned_cols=28 Identities=25% Similarity=0.407 Sum_probs=19.3
Q ss_pred ChHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Q 034673 21 PDRWQNVARAVGGGKSPDDVKRHYDRLVED 50 (87)
Q Consensus 21 pdRWekIA~~VpgGKS~~evk~hY~~LveD 50 (87)
.+-|+-+. |+.+-|.+||++.|..|+.-
T Consensus 7 ~~~y~iLg--v~~~a~~~~Ik~ayr~l~~~ 34 (79)
T 2dn9_A 7 GDYYQILG--VPRNASQKEIKKAYYQLAKK 34 (79)
T ss_dssp SCHHHHHT--CCTTCCHHHHHHHHHHHHHH
T ss_pred CCHHHHcC--CCCCCCHHHHHHHHHHHHHH
Confidence 34444444 44478999999999988653
No 150
>1ucr_A Protein DSVD; dissimilatory sulfite reductase D, DNA binding motif, sulfate-reducing bacteria, winged-helix motif, unknown function; 1.20A {Desulfovibrio vulgaris} SCOP: a.4.5.45 PDB: 1wq2_A
Probab=25.37 E-value=1.1e+02 Score=19.29 Aligned_cols=46 Identities=11% Similarity=0.085 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 034673 3 PEQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYDRLVE 49 (87)
Q Consensus 3 ~eenK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~~Lve 49 (87)
...++.+|-+-..-...+.=...-++..+| +....+|++--..||.
T Consensus 3 e~K~~Ile~l~~k~~~KskfYf~D~~k~~P-~~k~r~vKK~~~~LV~ 48 (78)
T 1ucr_A 3 EAKQKVVDFLNSKSGSKSKFYFNDFTDLFP-DMKQREVKKILTALVN 48 (78)
T ss_dssp HHHHHHHHHHSSHHHHSSCEEHHHHHHHCT-TSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchHHHHHHHcc-ccCHHHHHHHHHHHHh
Confidence 344555554433322233334567889999 8999999999888865
No 151
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=24.66 E-value=92 Score=22.06 Aligned_cols=46 Identities=20% Similarity=0.287 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHHHhhcCC--CCChHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 034673 1 MDPEQNKKFERALAVYDK--DTPDRWQNVARAVGGGKSPDDVKRHYDRLV 48 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~--~tpdRWekIA~~VpgGKS~~evk~hY~~Lv 48 (87)
++.+|.++.++.+..|.+ -+|..+..++..++ -...++..-...|+
T Consensus 135 ~~~~~~~~~~~i~~~~~~~g~~pp~~~dl~~~l~--~~~~~~~~~l~~l~ 182 (258)
T 1lva_A 135 FSETQKKLLKDLEDKYRVSRWQPPSFKEVAGSFN--LDPSELEELLHYLV 182 (258)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTSCCBHHHHHHHTT--CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCHHHHHhHhC--CCHHHHHHHHHHHH
Confidence 467888888888888843 34667888998886 56666655554443
No 152
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=24.60 E-value=91 Score=16.82 Aligned_cols=40 Identities=10% Similarity=0.071 Sum_probs=23.8
Q ss_pred HHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHH
Q 034673 7 KKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYDRL 47 (87)
Q Consensus 7 K~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~~L 47 (87)
+.|++||...|.+ +.-|..+|.+.-.-.-.++....|+..
T Consensus 25 ~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~a 64 (111)
T 2l6j_A 25 HCYDQLITAQPQN-PVGYSNKAMALIKLGEYTQAIQMCQQG 64 (111)
T ss_dssp HHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 5677777776654 677777776543233445555555544
No 153
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.51 E-value=64 Score=18.68 Aligned_cols=19 Identities=26% Similarity=0.424 Sum_probs=15.5
Q ss_pred cCCCCCHHHHHHHHHHHHH
Q 034673 31 VGGGKSPDDVKRHYDRLVE 49 (87)
Q Consensus 31 VpgGKS~~evk~hY~~Lve 49 (87)
|+.+-|.+||++.|..|+.
T Consensus 17 v~~~as~~eIk~ayr~l~~ 35 (82)
T 2ej7_A 17 VPRQASSEAIKKAYRKLAL 35 (82)
T ss_dssp CCTTCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 4447899999999999954
No 154
>1vp7_A Exodeoxyribonuclease VII small subunit; NP_881400.1, joint center for structural genomics, PSI, protein structure initiative; 2.40A {Bordetella pertussis tohama I} SCOP: a.7.13.1
Probab=24.38 E-value=47 Score=21.61 Aligned_cols=21 Identities=19% Similarity=0.278 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHhCCCCC
Q 034673 41 KRHYDRLVEDLIFIESAQFPL 61 (87)
Q Consensus 41 k~hY~~LveDV~~IEsg~v~~ 61 (87)
-..+..|.+=|..+|+|.+||
T Consensus 33 Eeal~eLEeIV~~LE~gel~L 53 (100)
T 1vp7_A 33 ETALAELESLVSAMENGTLPL 53 (100)
T ss_dssp HHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHHHHHHcCCCCH
Confidence 345567778888999999886
No 155
>1txl_A Metal-binding protein YODA; E.coli, structural genomics, NEW fold, PSI, protein structure initiative; 1.70A {Escherichia coli} SCOP: b.60.1.4 PDB: 1s7d_A 1oej_A 1oee_A 1oek_A
Probab=24.24 E-value=70 Score=23.52 Aligned_cols=33 Identities=24% Similarity=0.258 Sum_probs=25.5
Q ss_pred ChHHHHHHHHcCCCCCHHHHHHHHHHH-HHHHHHH
Q 034673 21 PDRWQNVARAVGGGKSPDDVKRHYDRL-VEDLIFI 54 (87)
Q Consensus 21 pdRWekIA~~VpgGKS~~evk~hY~~L-veDV~~I 54 (87)
.+-|+..|+.-+ .||++|+|..|..- .-||..|
T Consensus 74 d~v~~~kAk~~~-~~TaeeyKayy~~gYkTDv~~I 107 (215)
T 1txl_A 74 DPVFQKKADADK-TKTFAEIKDYYHKGYATDIEMI 107 (215)
T ss_dssp HHHHHHHHHHCT-TSCHHHHHHHHHHHHCCSEEEE
T ss_pred HHHHHHHHhhcC-CCCHHHHHHHHHhccCCCcceE
Confidence 467899998766 89999999999854 3355554
No 156
>1d2z_B Death domain of tube; six-helix bundle, linear array of death domains, plastic interfaces, apoptosis; HET: EPE; 2.00A {Drosophila melanogaster} SCOP: a.77.1.2
Probab=24.22 E-value=17 Score=25.59 Aligned_cols=37 Identities=11% Similarity=0.329 Sum_probs=24.2
Q ss_pred CChHHHHHHHHcCCCCCHHHHH------------HHHHHHHHHHHHHHh
Q 034673 20 TPDRWQNVARAVGGGKSPDDVK------------RHYDRLVEDLIFIES 56 (87)
Q Consensus 20 tpdRWekIA~~VpgGKS~~evk------------~hY~~LveDV~~IEs 56 (87)
..+.|.+++..||-+-...+|+ ...++=.++|+.||.
T Consensus 28 ~~d~WkkLm~~Ipk~l~~~~~~~~~~~~~~~~~~~~~kY~~~~i~~ie~ 76 (153)
T 1d2z_B 28 ENSCWRKLMSIIPKGMDVQACSGAGCLNFPAEIKKGFKYTAQDVFQIDE 76 (153)
T ss_dssp GGGHHHHHHHHCBSSCCHHHHHSTTCCCHHHHGGGCBSSCHHHHHHHHH
T ss_pred ccchHHHHHHhccccccccccccccccccccccccccCcCHHHHHHHHH
Confidence 3589999999999333455554 223344567777775
No 157
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=24.18 E-value=53 Score=19.34 Aligned_cols=16 Identities=19% Similarity=0.349 Sum_probs=13.5
Q ss_pred CCHHHHHHHHHHHHHH
Q 034673 35 KSPDDVKRHYDRLVED 50 (87)
Q Consensus 35 KS~~evk~hY~~LveD 50 (87)
-|.++|+++|+.|..-
T Consensus 19 a~~~~Ik~~yr~Lm~~ 34 (65)
T 2guz_B 19 LNMDKINNRFNYLFEV 34 (65)
T ss_dssp CSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 4889999999999653
No 158
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=24.17 E-value=67 Score=18.51 Aligned_cols=21 Identities=5% Similarity=0.010 Sum_probs=16.3
Q ss_pred cCC-CCCHHHHHHHHHHHHHHH
Q 034673 31 VGG-GKSPDDVKRHYDRLVEDL 51 (87)
Q Consensus 31 Vpg-GKS~~evk~hY~~LveDV 51 (87)
|+. +-|.+||+++|..|+.-.
T Consensus 22 l~~~~a~~~eIk~ayr~l~~~~ 43 (71)
T 2guz_A 22 LTENTLTKKKLKEVHRKIMLAN 43 (71)
T ss_dssp CCTTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHH
Confidence 443 478999999999997644
No 159
>1go3_F DNA-directed RNA polymerase subunit F; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: a.60.8.2
Probab=23.99 E-value=1.4e+02 Score=18.91 Aligned_cols=39 Identities=21% Similarity=0.224 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHH
Q 034673 4 EQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYD 45 (87)
Q Consensus 4 eenK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~ 45 (87)
++.+.+-..|..+. -++.-.-+||+..| +|.+|++--|-
T Consensus 50 e~a~~l~e~L~~~~-l~e~~a~~I~nl~P--~t~dElraii~ 88 (107)
T 1go3_F 50 EEAKKLVEELISLG-IDEKTAVKIADILP--EDLDDLRAIYY 88 (107)
T ss_dssp HHHHHHHHHHHHTT-CCHHHHHHHHHHCC--CSHHHHHHHST
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHhCC--CCHHHHHHHHh
Confidence 33333334455554 44566889999999 99999987653
No 160
>3top_A Maltase-glucoamylase, intestinal; membrane, hydrolase-hydrolase inhibitor complex; HET: ACR; 2.88A {Homo sapiens} PDB: 3ton_A*
Probab=23.93 E-value=74 Score=27.59 Aligned_cols=38 Identities=18% Similarity=0.256 Sum_probs=30.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCcc-ccCChH
Q 034673 34 GKSPDDVKRHYDRLVEDLIFIESAQFPLPNYKNTGNNCIG-ILADAP 79 (87)
Q Consensus 34 GKS~~evk~hY~~LveDV~~IEsg~v~~P~y~~~~~~~~~-~~~~~~ 79 (87)
|.|.+||.+.|..| .|+.++|-|+.-|-.-++ +..+++
T Consensus 268 Gptp~~Vi~qYt~L--------tG~p~mpP~WalGy~qsR~~Y~~~~ 306 (908)
T 3top_A 268 GPTPELVTQQYTEL--------IGRPVMVPYWSLGFQLCRYGYQNDS 306 (908)
T ss_dssp CSSHHHHHHHHHHH--------HCCCCCCCGGGGSCEECCTTCCSHH
T ss_pred CCCHHHHHHHHHHH--------hCCCCCCChhhhhcccccccCCCHH
Confidence 78999999999999 699999999887766544 444443
No 161
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=23.57 E-value=1.5e+02 Score=21.72 Aligned_cols=42 Identities=19% Similarity=0.314 Sum_probs=0.0
Q ss_pred HHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 034673 7 KKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYDRLVE 49 (87)
Q Consensus 7 K~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~~Lve 49 (87)
+.||.||..+| +.++-|...+...=.-...++++.-|+..+.
T Consensus 412 ~~~e~al~~~p-~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~ 453 (530)
T 2ooe_A 412 KIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 453 (530)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHh
No 162
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=23.49 E-value=1.3e+02 Score=18.16 Aligned_cols=43 Identities=26% Similarity=0.364 Sum_probs=35.3
Q ss_pred CCHHHHHHHHHHHhhcCCCCC--hHHHHHHHHcCCCCCHHHHHHHHH
Q 034673 1 MDPEQNKKFERALAVYDKDTP--DRWQNVARAVGGGKSPDDVKRHYD 45 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~tp--dRWekIA~~VpgGKS~~evk~hY~ 45 (87)
|+...+++++.|+..|.+..- -.-..||+..+ -|+.=+-+||.
T Consensus 2 m~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~ag--vs~~t~Y~~F~ 46 (170)
T 3egq_A 2 MTDQSVRIIEAALRLYMKKPPHEVSIEEIAREAK--VSKSLIFYHFE 46 (170)
T ss_dssp CCHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHT--SCHHHHHHHCS
T ss_pred ccHHHHHHHHHHHHHHHhcCCccCcHHHHHHHhC--CCchhHHHHcC
Confidence 788899999999999987553 35689999986 88888888883
No 163
>1iqq_A S3-RNAse; japanese PEAR, SELF-incompatibilit family ribonuclease, hydrolase; HET: NAG BMA MAN; 1.50A {Pyrus pyrifolia} SCOP: d.124.1.1
Probab=23.42 E-value=84 Score=21.39 Aligned_cols=40 Identities=25% Similarity=0.380 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhhc--CCCCChHHHHHHHHcCCCC--CHHHHHHH
Q 034673 4 EQNKKFERALAVY--DKDTPDRWQNVARAVGGGK--SPDDVKRH 43 (87)
Q Consensus 4 eenK~FE~ALa~~--~~~tpdRWekIA~~VpgGK--S~~evk~h 43 (87)
.|..=|+.||+.| ++-.--.+-+-+..+|.|+ |..++...
T Consensus 98 ~~~~YF~~a~~l~~~~k~n~~~~L~~~~I~P~~~~~t~~~I~~A 141 (200)
T 1iqq_A 98 NENHYFETVIKMYISKKQNVSRILSKAKIEPDGKKRALLDIENA 141 (200)
T ss_dssp SHHHHHHHHHHHHTTTCCCHHHHHHHTTCCSSCCEECHHHHHHH
T ss_pred CHHHHHHHHHHHHhhcccCHHHHHHHcCCccCCCeecHHHHHHH
Confidence 5778899999998 5454445555566788555 45555433
No 164
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=23.38 E-value=1.1e+02 Score=17.35 Aligned_cols=43 Identities=12% Similarity=0.033 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHHHhh---cCCCCChHHHHHHHHcCCCCCHHHHHHHHH
Q 034673 1 MDPEQNKKFERALAV---YDKDTPDRWQNVARAVGGGKSPDDVKRHYD 45 (87)
Q Consensus 1 ~T~eenK~FE~ALa~---~~~~tpdRWekIA~~VpgGKS~~evk~hY~ 45 (87)
+|.++...+|..+.. .+--+...=+.+|..++ -|..+|..=|.
T Consensus 14 ~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~--L~~~qV~~WFq 59 (73)
T 1x2n_A 14 LPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTN--LTLLQVNNWFI 59 (73)
T ss_dssp CCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHT--CCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHC--cCHHHHHHHhH
Confidence 578899999999976 34344555677888875 99999887664
No 165
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=23.24 E-value=1.2e+02 Score=17.52 Aligned_cols=41 Identities=7% Similarity=0.029 Sum_probs=27.4
Q ss_pred CCHHHHHHHHHHHhhcCCCCC-----hHHHHHHHHcCCCCCHHHHHHH
Q 034673 1 MDPEQNKKFERALAVYDKDTP-----DRWQNVARAVGGGKSPDDVKRH 43 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~tp-----dRWekIA~~VpgGKS~~evk~h 43 (87)
||.+|.+.|..|+..|+.+.. +-...+-..++ -+.+++.+-
T Consensus 3 ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g--~~~~~~~~i 48 (92)
T 1fi6_A 3 ITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSK--LPILELSHI 48 (92)
T ss_dssp CCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHS--SCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcC--CCHHHHHHH
Confidence 689999999999999987542 33444444443 566665554
No 166
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=23.24 E-value=72 Score=18.15 Aligned_cols=29 Identities=14% Similarity=0.346 Sum_probs=20.3
Q ss_pred ChHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Q 034673 21 PDRWQNVARAVGGGKSPDDVKRHYDRLVEDL 51 (87)
Q Consensus 21 pdRWekIA~~VpgGKS~~evk~hY~~LveDV 51 (87)
.+-++-+. |+.+-|.++|++.|..|+.-.
T Consensus 8 ~~~y~iLg--l~~~a~~~eIk~ayr~l~~~~ 36 (73)
T 2och_A 8 TGYYDVLG--VKPDASDNELKKAYRKMALKF 36 (73)
T ss_dssp CCHHHHHT--CCTTCCHHHHHHHHHHHHHHT
T ss_pred CCHHHHcC--CCCCCCHHHHHHHHHHHHHHH
Confidence 34444444 444789999999999997543
No 167
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=23.20 E-value=1.2e+02 Score=17.54 Aligned_cols=43 Identities=23% Similarity=0.231 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHH
Q 034673 1 MDPEQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYD 45 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~ 45 (87)
+|.+|...||.++..-+--+...=+.+|..++ -|...|+.=|.
T Consensus 20 ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~--l~~~qV~vWFq 62 (77)
T 1puf_A 20 YTKHQTLELEKEFLFNMYLTRDRRYEVARLLN--LTERQVKIWFQ 62 (77)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHT--CCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCCHHHHHHHHHHHC--cCHHHHHHHHH
Confidence 57889999999998866545555577899885 99999886664
No 168
>1ich_A TNF-1, tumor necrosis factor receptor-1; death domain, apoptosis; NMR {Homo sapiens} SCOP: a.77.1.2
Probab=22.59 E-value=78 Score=20.80 Aligned_cols=38 Identities=13% Similarity=0.059 Sum_probs=29.5
Q ss_pred CCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhC
Q 034673 19 DTPDRWQNVARAVGGGKSPDDVKRHYDRLVEDLIFIESA 57 (87)
Q Consensus 19 ~tpdRWekIA~~VpgGKS~~evk~hY~~LveDV~~IEsg 57 (87)
+.|.--..|+..|| ++.-.++.++--.-..+|..||..
T Consensus 11 ~~~~~l~~i~d~v~-~~~WK~~aRkLGLse~~Id~Ie~~ 48 (112)
T 1ich_A 11 DDPATLYAVVENVP-PLRWKEFVKRLGLSDHEIDRLELQ 48 (112)
T ss_dssp --CHHHHHHHHHSC-STTHHHHHHHHTCCHHHHHHHHHH
T ss_pred cchHHHHHHHHhCC-HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 34555678899999 899999999988777888888854
No 169
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=22.53 E-value=95 Score=18.36 Aligned_cols=19 Identities=32% Similarity=0.552 Sum_probs=11.5
Q ss_pred cCCCCCHHHHHHHHHHHHH
Q 034673 31 VGGGKSPDDVKRHYDRLVE 49 (87)
Q Consensus 31 VpgGKS~~evk~hY~~Lve 49 (87)
|+-+-|.+||++.|..|+.
T Consensus 25 v~~~as~~eIk~ayr~l~~ 43 (88)
T 2cug_A 25 VSRTASQADIKKAYKKLAR 43 (88)
T ss_dssp CCTTCCHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHH
Confidence 3335666777777766654
No 170
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=22.49 E-value=70 Score=18.89 Aligned_cols=16 Identities=6% Similarity=-0.006 Sum_probs=12.6
Q ss_pred CCHHHHHHHHHHHHHH
Q 034673 35 KSPDDVKRHYDRLVED 50 (87)
Q Consensus 35 KS~~evk~hY~~LveD 50 (87)
-|..++++.|..|+.-
T Consensus 25 a~~~eIk~aYr~la~~ 40 (79)
T 1faf_A 25 GDFGRMQQAYKQQSLL 40 (79)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 6888899999888643
No 171
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=22.38 E-value=82 Score=17.04 Aligned_cols=41 Identities=12% Similarity=0.079 Sum_probs=23.5
Q ss_pred HHHHHHHhhcCCCCCh-HHHHHHHHcCCCCCHHHHHHHHHHHH
Q 034673 7 KKFERALAVYDKDTPD-RWQNVARAVGGGKSPDDVKRHYDRLV 48 (87)
Q Consensus 7 K~FE~ALa~~~~~tpd-RWekIA~~VpgGKS~~evk~hY~~Lv 48 (87)
+.|+.||...|.+ +. -|..+|.+.-.-.-.++....|+..+
T Consensus 21 ~~~~~al~~~p~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al 62 (99)
T 2kc7_A 21 QALEEFLQTEPVG-KDEAYYLMGNAYRKLGDWQKALNNYQSAI 62 (99)
T ss_dssp HHHHHHHHHCSST-HHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCc-HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5677777776654 45 67666654431234555666665544
No 172
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=22.33 E-value=76 Score=18.18 Aligned_cols=20 Identities=30% Similarity=0.537 Sum_probs=16.0
Q ss_pred cCCCCCHHHHHHHHHHHHHH
Q 034673 31 VGGGKSPDDVKRHYDRLVED 50 (87)
Q Consensus 31 VpgGKS~~evk~hY~~LveD 50 (87)
|+.+-|.++|++.|..|+.-
T Consensus 11 v~~~as~~~Ik~ayr~l~~~ 30 (77)
T 1hdj_A 11 LARGASDEEIKRAYRRQALR 30 (77)
T ss_dssp CCTTCCHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 44478999999999999653
No 173
>3h3g_B Parathyroid hormone-related protein; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli}
Probab=22.27 E-value=87 Score=15.71 Aligned_cols=18 Identities=33% Similarity=0.805 Sum_probs=12.4
Q ss_pred CCCHHHHHHHH--HHHHHHH
Q 034673 34 GKSPDDVKRHY--DRLVEDL 51 (87)
Q Consensus 34 GKS~~evk~hY--~~LveDV 51 (87)
|+|..|.+++. ..|++.|
T Consensus 1 grs~Q~~rRr~wL~~ll~~v 20 (24)
T 3h3g_B 1 GKSIQDLRRRFFLHHLIAEI 20 (26)
T ss_dssp -CCHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHh
Confidence 68999999886 4555554
No 174
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.09 E-value=77 Score=18.19 Aligned_cols=19 Identities=42% Similarity=0.672 Sum_probs=15.5
Q ss_pred cCCCCCHHHHHHHHHHHHH
Q 034673 31 VGGGKSPDDVKRHYDRLVE 49 (87)
Q Consensus 31 VpgGKS~~evk~hY~~Lve 49 (87)
|+.+-|.+||++.|..|+.
T Consensus 15 v~~~as~~eIk~ayr~l~~ 33 (78)
T 2ctp_A 15 VSRGASDEDLKKAYRRLAL 33 (78)
T ss_dssp CCTTCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 4447899999999999854
No 175
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=22.02 E-value=1.3e+02 Score=17.61 Aligned_cols=43 Identities=7% Similarity=0.179 Sum_probs=33.0
Q ss_pred CCHHHHHHHHHHH---hhcCCCCChHHHHHHHHcCCCCCHHHHHHHHH
Q 034673 1 MDPEQNKKFERAL---AVYDKDTPDRWQNVARAVGGGKSPDDVKRHYD 45 (87)
Q Consensus 1 ~T~eenK~FE~AL---a~~~~~tpdRWekIA~~VpgGKS~~evk~hY~ 45 (87)
+|.++-..+|..+ ...+--+.+.=+.||..++ -|..+|+.=|.
T Consensus 8 ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~--l~~~qV~~WFq 53 (87)
T 1b72_B 8 FNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCG--ITVSQVSNWFG 53 (87)
T ss_dssp CCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHT--SCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHC--cCHHHHHHHHH
Confidence 5788999999999 5545445555677899885 99999987764
No 176
>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand, helix-loop- helix, nervous system, metal binding protein; NMR {Haemopis marmorata} PDB: 1yx8_A
Probab=22.00 E-value=7.7 Score=21.54 Aligned_cols=45 Identities=20% Similarity=0.166 Sum_probs=25.8
Q ss_pred CCHHHHHHHHHHHhhcCCCC-----ChHHHHHHHHcC--CCCCHHHHHHHHH
Q 034673 1 MDPEQNKKFERALAVYDKDT-----PDRWQNVARAVG--GGKSPDDVKRHYD 45 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~t-----pdRWekIA~~Vp--gGKS~~evk~hY~ 45 (87)
||.++...+..++..|+.+. .+-+..+-..++ .+-|.+++...+.
T Consensus 1 l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 52 (83)
T 1yx7_A 1 MACKVKAELEAAFKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEASA 52 (83)
T ss_dssp CCSCSCTHHHHHHHHHSSSCSSSCSHHHHHHHHHHHTTCTTTTTTTTHHHHH
T ss_pred CCccHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHccccCCCHHHHHHHHH
Confidence 45566677888889998653 233444444443 2455556555433
No 177
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=21.90 E-value=1.2e+02 Score=17.19 Aligned_cols=43 Identities=7% Similarity=0.179 Sum_probs=33.0
Q ss_pred CCHHHHHHHHHHH---hhcCCCCChHHHHHHHHcCCCCCHHHHHHHHH
Q 034673 1 MDPEQNKKFERAL---AVYDKDTPDRWQNVARAVGGGKSPDDVKRHYD 45 (87)
Q Consensus 1 ~T~eenK~FE~AL---a~~~~~tpdRWekIA~~VpgGKS~~evk~hY~ 45 (87)
+|.++-..+|..+ ...+--++..=+.+|..++ -|..+|+.=|.
T Consensus 8 ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~--L~~~qV~~WFq 53 (73)
T 1puf_B 8 FNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCG--ITVSQVSNWFG 53 (73)
T ss_dssp CCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHT--SCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHC--cCHHHHHHHHH
Confidence 5788999999999 5555445556678898885 99999987664
No 178
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=21.88 E-value=98 Score=19.91 Aligned_cols=42 Identities=12% Similarity=0.091 Sum_probs=25.6
Q ss_pred HHHHHHHhhcCCCC--ChHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 034673 7 KKFERALAVYDKDT--PDRWQNVARAVGGGKSPDDVKRHYDRLV 48 (87)
Q Consensus 7 K~FE~ALa~~~~~t--pdRWekIA~~VpgGKS~~evk~hY~~Lv 48 (87)
..|+++|..||.+. ++-|..++.+.-.-.-.++.+..|+.|.
T Consensus 168 ~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~ 211 (225)
T 2yhc_A 168 NRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIA 211 (225)
T ss_dssp HHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 56788888887653 3567777765432234555566666554
No 179
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=21.66 E-value=1.1e+02 Score=20.39 Aligned_cols=27 Identities=30% Similarity=0.379 Sum_probs=22.1
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Q 034673 24 WQNVARAVGGGKSPDDVKRHYDRLVEDLI 52 (87)
Q Consensus 24 WekIA~~VpgGKS~~evk~hY~~LveDV~ 52 (87)
...|+..++ -|..+++++|++|.+.+.
T Consensus 168 ~~ei~~~~~--vs~~ti~~~~~~l~~~l~ 194 (200)
T 1ais_B 168 QREVAEVAR--VTEVTVRNRYKELVEKLK 194 (200)
T ss_dssp HHHHHHHHT--CCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhC--CCHHHHHHHHHHHHHHcC
Confidence 467777664 899999999999988764
No 180
>2a9i_A IRAK-4, interleukin-1 receptor-associated kinase-4; hexahelical bundle, transferase; 1.70A {Mus musculus} PDB: 3mop_G
Probab=21.60 E-value=65 Score=20.86 Aligned_cols=12 Identities=25% Similarity=0.684 Sum_probs=10.7
Q ss_pred ChHHHHHHHHcC
Q 034673 21 PDRWQNVARAVG 32 (87)
Q Consensus 21 pdRWekIA~~Vp 32 (87)
.+.|.++|..|+
T Consensus 29 ~~~W~~La~~i~ 40 (113)
T 2a9i_A 29 QEGWKKLAVAIK 40 (113)
T ss_dssp GGHHHHHHHHCB
T ss_pred cccHHHHHHHHc
Confidence 378999999997
No 181
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=21.52 E-value=1.1e+02 Score=18.88 Aligned_cols=27 Identities=11% Similarity=0.156 Sum_probs=22.8
Q ss_pred hHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Q 034673 22 DRWQNVARAVGGGKSPDDVKRHYDRLVED 50 (87)
Q Consensus 22 dRWekIA~~VpgGKS~~evk~hY~~LveD 50 (87)
--=..||..++ -|+..|.+|-..|+++
T Consensus 31 ~sa~eLAk~Lg--iSk~aVr~~L~~Le~e 57 (82)
T 1oyi_A 31 ATAAQLTRQLN--MEKREVNKALYDLQRS 57 (82)
T ss_dssp EEHHHHHHHSS--SCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHC--cCHHHHHHHHHHHHHC
Confidence 44678999996 9999999999999653
No 182
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=21.52 E-value=1.5e+02 Score=18.24 Aligned_cols=44 Identities=2% Similarity=0.012 Sum_probs=34.8
Q ss_pred CCHHHHHHHHHHHhh-cCCCCChHHHHHHHHcCCCCCHHHHHHHHHH
Q 034673 1 MDPEQNKKFERALAV-YDKDTPDRWQNVARAVGGGKSPDDVKRHYDR 46 (87)
Q Consensus 1 ~T~eenK~FE~ALa~-~~~~tpdRWekIA~~VpgGKS~~evk~hY~~ 46 (87)
+|.+|-..|+.+++. -+.-+...=+.+|+..+ -++.-|+.=|.-
T Consensus 14 ~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tG--L~~~~IqVWFQN 58 (71)
T 1wi3_A 14 ISLEALGILQSFIHDVGLYPDQEAIHTLSAQLD--LPKHTIIKFFQN 58 (71)
T ss_dssp CCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSC--CCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhC--CCHHHHHHhhcc
Confidence 477899999999999 45555567799999885 888888876654
No 183
>1oeg_A Apolipoprotein E; sialic acid, heparin-binding, repeat, signal, disease mutation, polymorphism; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=21.51 E-value=43 Score=17.06 Aligned_cols=16 Identities=31% Similarity=0.601 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 034673 37 PDDVKRHYDRLVEDLI 52 (87)
Q Consensus 37 ~~evk~hY~~LveDV~ 52 (87)
++++++++..|++-|+
T Consensus 3 ~e~mr~Q~~~lveKvq 18 (26)
T 1oeg_A 3 VEDMQRQWAGLVEKVQ 18 (26)
T ss_dssp HHHTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4678888898888876
No 184
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=21.35 E-value=1.3e+02 Score=17.45 Aligned_cols=43 Identities=12% Similarity=0.087 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHH
Q 034673 1 MDPEQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYD 45 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~ 45 (87)
+|.+|-..||.++..-+.-+...=+.||..++ -|...|+.=|.
T Consensus 29 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~--l~~~qV~vWFq 71 (84)
T 2kt0_A 29 FSSTQLCVLNDRFQRQKYLSLQQMQELSNILN--LSYKQVKTWFQ 71 (84)
T ss_dssp CCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTT--CCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcC--CCHHHHHHHHH
Confidence 57889999999988766544444577898885 89988886664
No 185
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=21.28 E-value=1.6e+02 Score=18.43 Aligned_cols=42 Identities=17% Similarity=0.150 Sum_probs=30.3
Q ss_pred CHHHHHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 034673 2 DPEQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYDRLVE 49 (87)
Q Consensus 2 T~eenK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~~Lve 49 (87)
+.-+.+.+ .+|...+ +-.+..||+.++ -|..-|.+|.+.|.+
T Consensus 4 d~~d~~il-~~L~~~~---~~s~~ela~~lg--~s~~tv~~~l~~L~~ 45 (144)
T 2cfx_A 4 DQIDLNII-EELKKDS---RLSMRELGRKIK--LSPPSVTERVRQLES 45 (144)
T ss_dssp CHHHHHHH-HHHHHCS---CCCHHHHHHHHT--CCHHHHHHHHHHHHH
T ss_pred CHHHHHHH-HHHHHcC---CCCHHHHHHHHC--cCHHHHHHHHHHHHH
Confidence 44444444 3565543 455889999996 999999999999954
No 186
>1lnl_A Hemocyanin; deoxygenated form, oxygen, metal binding site, cooperativity, oxygen storage-transport complex; HET: NAG; 3.30A {Rapana thomasiana} SCOP: a.86.1.1 b.112.1.1
Probab=21.17 E-value=55 Score=25.11 Aligned_cols=30 Identities=20% Similarity=0.380 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHHHhhcCC-CCChHHHHHHHH
Q 034673 1 MDPEQNKKFERALAVYDK-DTPDRWQNVARA 30 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~-~tpdRWekIA~~ 30 (87)
||.+|.+.|-.||...-. ..+++|+.||..
T Consensus 13 Ls~~e~~~y~~A~~~l~~~~~~~~y~~~a~~ 43 (408)
T 1lnl_A 13 LSPAERASLVAALKSLQEDSSADGFQSLASF 43 (408)
T ss_dssp CCHHHHHHHHHHHHHHTTCCSTTSTTHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHCCCCccHHHHhhh
Confidence 789999999999998753 445678888863
No 187
>3d3z_A Actibind; RNAse, hydrolase; HET: NAG D3Z; 1.70A {Aspergillus niger}
Probab=21.17 E-value=1.1e+02 Score=21.97 Aligned_cols=43 Identities=9% Similarity=0.057 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhhcCCCCChHHHHHHHHcCCC---CCHHHHHHHHH
Q 034673 3 PEQNKKFERALAVYDKDTPDRWQNVARAVGGG---KSPDDVKRHYD 45 (87)
Q Consensus 3 ~eenK~FE~ALa~~~~~tpdRWekIA~~VpgG---KS~~evk~hY~ 45 (87)
.++..=|+.||+.|.+-.--.|-+=|.-+|+. -|..++...++
T Consensus 134 ~~~~~YF~~al~L~~k~n~~~~L~~~gI~P~~~~tyt~~~I~~Ai~ 179 (247)
T 3d3z_A 134 EEVGDFFQQVVDLFKTLDSYTALSDAGITPSEDATYKLSDIEDALA 179 (247)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHTTCCCCSSCCBCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhcCcHHHHHHCCccCCCCceECHHHHHHHHH
Confidence 56788999999999876545565556678832 15777766554
No 188
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.02 E-value=81 Score=18.69 Aligned_cols=27 Identities=15% Similarity=0.313 Sum_probs=18.5
Q ss_pred hHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Q 034673 22 DRWQNVARAVGGGKSPDDVKRHYDRLVED 50 (87)
Q Consensus 22 dRWekIA~~VpgGKS~~evk~hY~~LveD 50 (87)
+-|+-+. |+-+-|.+||++.|..|+.-
T Consensus 8 ~~y~iLg--v~~~as~~eIk~ayr~l~~~ 34 (88)
T 2ctr_A 8 SYYDILG--VPKSASERQIKKAFHKLAMK 34 (88)
T ss_dssp SHHHHHT--CCTTCCHHHHHHHHHHHHHH
T ss_pred CHHHHcC--cCCCCCHHHHHHHHHHHHHH
Confidence 4444443 44478999999999988654
No 189
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=20.69 E-value=1.2e+02 Score=17.23 Aligned_cols=43 Identities=2% Similarity=-0.082 Sum_probs=24.7
Q ss_pred HHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 034673 6 NKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYDRLVE 49 (87)
Q Consensus 6 nK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~~Lve 49 (87)
-+.|++||..+|.+ ++-|-.++.+.-.-.-.++-...|+..++
T Consensus 47 ~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 89 (117)
T 3k9i_A 47 EAVLANGVKQFPNH-QALRVFYAMVLYNLGRYEQGVELLLKIIA 89 (117)
T ss_dssp HHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35678888877765 56676666554322334555555554443
No 190
>1wh4_A IRAK4, interleukin-1 receptor-associated kinase 4; death domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.77.1.2
Probab=20.67 E-value=81 Score=20.84 Aligned_cols=13 Identities=23% Similarity=0.634 Sum_probs=11.2
Q ss_pred CChHHHHHHHHcC
Q 034673 20 TPDRWQNVARAVG 32 (87)
Q Consensus 20 tpdRWekIA~~Vp 32 (87)
.++.|.++|..|+
T Consensus 35 ~~~~Wr~LA~~i~ 47 (127)
T 1wh4_A 35 PQEGWKKLAVAIK 47 (127)
T ss_dssp STTHHHHHHHHCB
T ss_pred CcccHHHHHHHHc
Confidence 3488999999997
No 191
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=20.23 E-value=1.5e+02 Score=18.64 Aligned_cols=39 Identities=10% Similarity=-0.153 Sum_probs=17.7
Q ss_pred HHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHH
Q 034673 8 KFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYDRL 47 (87)
Q Consensus 8 ~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~~L 47 (87)
.|++||...| +.++-|..++.+.-.-+-.++-...|+..
T Consensus 58 ~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~Ai~~~~~a 96 (151)
T 3gyz_A 58 FFRFLCIYDF-YNVDYIMGLAAIYQIKEQFQQAADLYAVA 96 (151)
T ss_dssp HHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 4455554433 33455665554433223344444444433
No 192
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=20.21 E-value=1.2e+02 Score=16.42 Aligned_cols=43 Identities=16% Similarity=0.180 Sum_probs=32.9
Q ss_pred CCHHHHHHHHHHHhhcCCCCChHHHHHHHHcCCCCCHHHHHHHHH
Q 034673 1 MDPEQNKKFERALAVYDKDTPDRWQNVARAVGGGKSPDDVKRHYD 45 (87)
Q Consensus 1 ~T~eenK~FE~ALa~~~~~tpdRWekIA~~VpgGKS~~evk~hY~ 45 (87)
+|.+|-..+|.+...-+--++..=+.+|..++ -|...|+.=|.
T Consensus 4 ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~--l~~~qV~~WFq 46 (56)
T 3a03_A 4 FSRSQVLELERRFLRQKYLASAERAALAKALR--MTDAQVKTWFQ 46 (56)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHT--CCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhC--cCHHHhhHhhH
Confidence 47889999999998866545554567899885 89999886553
No 193
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=20.20 E-value=81 Score=19.25 Aligned_cols=16 Identities=19% Similarity=0.488 Sum_probs=13.4
Q ss_pred CCCHHHHHHHHHHHHH
Q 034673 34 GKSPDDVKRHYDRLVE 49 (87)
Q Consensus 34 GKS~~evk~hY~~Lve 49 (87)
+-|.+||++.|..|+.
T Consensus 14 ~as~~eIk~ayr~l~~ 29 (103)
T 1bq0_A 14 TAEEREIRKAYKRLAM 29 (103)
T ss_dssp SCCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHH
Confidence 6788999999988864
Done!