Query 034677
Match_columns 87
No_of_seqs 104 out of 1007
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 05:20:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034677.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034677hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00777 phosphopantetheine ad 99.8 5E-20 1.1E-24 125.2 8.1 64 21-86 1-64 (153)
2 cd02164 PPAT_CoAS phosphopante 99.8 2.2E-19 4.7E-24 121.1 7.7 65 23-87 1-65 (143)
3 PLN02388 phosphopantetheine ad 99.8 1.4E-18 3E-23 121.0 8.5 83 4-86 2-84 (177)
4 COG1019 Predicted nucleotidylt 99.7 1.5E-18 3.3E-23 118.2 5.5 67 18-86 2-68 (158)
5 PRK00168 coaD phosphopantethei 99.7 7.2E-18 1.6E-22 114.6 8.2 59 21-86 1-59 (159)
6 TIGR00125 cyt_tran_rel cytidyl 99.7 1.1E-17 2.3E-22 97.7 7.0 62 23-86 1-62 (66)
7 PRK13964 coaD phosphopantethei 99.7 1.1E-17 2.3E-22 112.8 7.9 59 21-86 1-59 (140)
8 KOG3351 Predicted nucleotidylt 99.7 2.7E-18 5.9E-23 125.0 3.6 74 13-86 134-207 (293)
9 cd02173 ECT CTP:phosphoethanol 99.7 1.3E-17 2.9E-22 113.2 6.7 61 22-83 3-64 (152)
10 COG1057 NadD Nicotinic acid mo 99.7 3E-17 6.5E-22 115.8 8.4 65 20-87 2-67 (197)
11 PRK01170 phosphopantetheine ad 99.7 1.8E-17 3.9E-22 124.2 6.4 62 22-86 1-62 (322)
12 TIGR01510 coaD_prev_kdtB pante 99.7 8.7E-17 1.9E-21 108.8 7.5 57 23-86 1-57 (155)
13 cd02163 PPAT Phosphopantethein 99.7 9.4E-17 2E-21 108.6 7.6 57 23-86 1-57 (153)
14 cd02167 NMNAT_NadR Nicotinamid 99.7 1.5E-16 3.2E-21 108.5 7.8 61 23-87 1-61 (158)
15 cd02174 CCT CTP:phosphocholine 99.7 1.1E-16 2.3E-21 108.6 6.9 61 22-84 3-65 (150)
16 PRK06973 nicotinic acid mononu 99.7 4.2E-16 9.2E-21 112.8 8.6 63 19-86 20-83 (243)
17 PF01467 CTP_transf_2: Cytidyl 99.6 3.3E-16 7.2E-21 101.9 5.7 59 25-86 1-60 (157)
18 PRK00071 nadD nicotinic acid m 99.6 1.4E-15 3E-20 106.4 8.8 65 20-87 3-68 (203)
19 PRK07152 nadD putative nicotin 99.6 1.1E-15 2.4E-20 114.2 8.6 63 21-86 1-64 (342)
20 PRK08887 nicotinic acid mononu 99.6 1.1E-15 2.4E-20 105.4 7.7 60 21-87 2-61 (174)
21 cd02166 NMNAT_Archaea Nicotina 99.6 1.4E-15 3.1E-20 103.9 7.7 60 23-86 1-60 (163)
22 COG0615 TagD Cytidylyltransfer 99.6 4.2E-16 9E-21 105.1 4.9 61 22-83 2-62 (140)
23 PTZ00308 ethanolamine-phosphat 99.6 1.3E-15 2.7E-20 115.3 8.1 66 17-83 188-254 (353)
24 TIGR01527 arch_NMN_Atrans nico 99.6 1.7E-15 3.8E-20 104.2 7.8 60 23-86 1-60 (165)
25 COG0669 CoaD Phosphopantethein 99.6 1.4E-15 3.1E-20 104.0 7.1 59 21-86 2-60 (159)
26 PLN02406 ethanolamine-phosphat 99.6 1.3E-15 2.7E-20 117.4 7.6 63 18-83 50-113 (418)
27 TIGR01526 nadR_NMN_Atrans nico 99.6 2.2E-15 4.9E-20 112.3 8.3 62 21-86 1-62 (325)
28 cd02168 NMNAT_Nudix Nicotinami 99.6 2.5E-15 5.5E-20 104.5 7.9 60 24-87 2-61 (181)
29 TIGR00482 nicotinate (nicotina 99.6 2.2E-15 4.8E-20 104.8 7.3 59 25-86 1-60 (193)
30 cd02165 NMNAT Nicotinamide/nic 99.6 3.7E-15 8.1E-20 103.2 7.8 60 23-86 1-61 (192)
31 cd02170 cytidylyltransferase c 99.6 3E-15 6.5E-20 98.6 6.2 60 21-83 1-61 (136)
32 cd02039 cytidylyltransferase_l 99.6 6.3E-15 1.4E-19 95.5 7.0 61 23-85 1-61 (143)
33 cd02171 G3P_Cytidylyltransfera 99.6 4.6E-15 9.9E-20 96.9 6.1 62 21-84 1-62 (129)
34 PRK01153 nicotinamide-nucleoti 99.6 1.7E-14 3.7E-19 99.8 8.2 59 23-86 2-61 (174)
35 PRK05379 bifunctional nicotina 99.6 1.7E-14 3.7E-19 108.1 8.8 64 19-86 4-67 (340)
36 PLN02406 ethanolamine-phosphat 99.6 1.1E-14 2.3E-19 112.4 7.1 67 16-83 246-313 (418)
37 cd02156 nt_trans nucleotidyl t 99.5 2.3E-14 4.9E-19 90.9 6.7 58 23-84 1-58 (105)
38 PLN02413 choline-phosphate cyt 99.5 3.1E-14 6.7E-19 105.3 8.1 67 15-83 21-89 (294)
39 PLN02945 nicotinamide-nucleoti 99.5 1E-13 2.2E-18 99.5 8.1 70 13-87 14-89 (236)
40 PTZ00308 ethanolamine-phosphat 99.4 3.1E-13 6.7E-18 102.3 7.0 63 19-84 9-72 (353)
41 TIGR01518 g3p_cytidyltrns glyc 99.4 2.2E-13 4.8E-18 88.9 5.2 59 24-84 1-59 (125)
42 KOG2803 Choline phosphate cyti 99.4 6.4E-13 1.4E-17 99.5 5.7 62 19-83 6-68 (358)
43 cd02172 RfaE_N N-terminal doma 99.4 1.8E-12 3.8E-17 87.1 7.1 61 21-83 4-64 (144)
44 TIGR02199 rfaE_dom_II rfaE bif 99.4 1.8E-12 3.8E-17 87.0 7.0 63 21-84 11-74 (144)
45 cd09286 NMNAT_Eukarya Nicotina 99.4 2.2E-12 4.9E-17 92.2 7.8 59 23-86 2-67 (225)
46 PRK08099 bifunctional DNA-bind 99.4 2.2E-12 4.7E-17 98.9 8.2 67 19-86 50-120 (399)
47 TIGR00124 cit_ly_ligase [citra 99.4 2.9E-12 6.3E-17 96.3 7.6 58 21-87 139-196 (332)
48 COG2870 RfaE ADP-heptose synth 99.3 2E-12 4.3E-17 99.7 5.7 60 23-83 334-394 (467)
49 PRK13793 nicotinamide-nucleoti 99.3 6.7E-12 1.5E-16 88.7 7.8 63 20-86 3-65 (196)
50 PRK11316 bifunctional heptose 99.2 2.1E-11 4.5E-16 93.5 6.8 63 20-83 339-402 (473)
51 KOG2803 Choline phosphate cyti 99.2 7.8E-11 1.7E-15 88.5 6.5 67 16-83 193-260 (358)
52 cd02064 FAD_synthetase_N FAD s 99.1 4.5E-10 9.8E-15 77.4 6.5 61 24-84 2-68 (180)
53 cd02169 Citrate_lyase_ligase C 99.1 6.3E-10 1.4E-14 82.7 7.6 59 20-87 113-171 (297)
54 COG1056 NadR Nicotinamide mono 99.0 9.4E-10 2E-14 76.5 6.7 63 20-86 2-64 (172)
55 smart00764 Citrate_ly_lig Citr 99.0 1.8E-09 3.9E-14 75.3 6.7 51 28-87 6-56 (182)
56 PRK13671 hypothetical protein; 99.0 2.2E-09 4.9E-14 80.0 6.9 53 28-83 7-60 (298)
57 KOG2804 Phosphorylcholine tran 98.7 1.8E-08 3.8E-13 75.6 5.5 63 19-83 61-125 (348)
58 PRK07143 hypothetical protein; 98.5 6.5E-07 1.4E-11 66.2 7.2 64 19-83 13-76 (279)
59 PRK05627 bifunctional riboflav 98.4 6.4E-07 1.4E-11 66.8 6.5 62 23-84 15-82 (305)
60 PF06574 FAD_syn: FAD syntheta 98.2 6.4E-06 1.4E-10 56.1 6.4 64 21-84 5-74 (157)
61 TIGR00339 sopT ATP sulphurylas 98.0 3.7E-05 8.1E-10 59.1 8.2 59 22-86 184-243 (383)
62 PF08218 Citrate_ly_lig: Citra 98.0 2.7E-05 5.8E-10 54.7 5.9 49 28-85 6-54 (182)
63 TIGR00083 ribF riboflavin kina 97.9 3.4E-05 7.4E-10 57.3 6.3 59 25-84 2-66 (288)
64 PF05636 HIGH_NTase1: HIGH Nuc 97.7 0.0001 2.2E-09 56.8 5.6 53 28-82 8-60 (388)
65 PRK13670 hypothetical protein; 97.6 0.00015 3.1E-09 55.9 5.6 54 28-83 8-61 (388)
66 COG0196 RibF FAD synthase [Coe 97.4 0.00031 6.6E-09 52.8 5.4 64 21-84 15-84 (304)
67 COG1323 Predicted nucleotidylt 97.4 0.0003 6.5E-09 53.9 4.6 53 28-83 8-61 (358)
68 TIGR00018 panC pantoate--beta- 96.9 0.0038 8.3E-08 46.5 6.8 59 22-84 25-85 (282)
69 COG3053 CitC Citrate lyase syn 96.9 0.0033 7.1E-08 47.7 6.2 56 20-85 144-200 (352)
70 cd00560 PanC Pantoate-beta-ala 96.9 0.0042 9.1E-08 46.1 6.7 61 19-83 22-84 (277)
71 PRK00380 panC pantoate--beta-a 96.7 0.0075 1.6E-07 44.8 6.8 55 29-84 29-85 (281)
72 KOG3199 Nicotinamide mononucle 96.6 0.0081 1.7E-07 43.5 6.3 59 25-85 12-74 (234)
73 PLN02660 pantoate--beta-alanin 96.6 0.009 1.9E-07 44.6 6.8 60 21-84 23-84 (284)
74 PF01747 ATP-sulfurylase: ATP- 95.9 0.059 1.3E-06 38.7 7.5 59 22-86 21-79 (215)
75 cd00517 ATPS ATP-sulfurylase. 95.6 0.093 2E-06 40.2 7.9 59 22-86 157-216 (353)
76 COG2046 MET3 ATP sulfurylase ( 95.6 0.079 1.7E-06 41.2 7.5 60 20-86 182-241 (397)
77 PRK04149 sat sulfate adenylylt 95.5 0.1 2.2E-06 40.5 7.8 59 21-86 186-244 (391)
78 PRK05537 bifunctional sulfate 94.1 0.33 7.2E-06 39.2 7.7 60 21-86 186-245 (568)
79 PRK13477 bifunctional pantoate 94.0 0.065 1.4E-06 42.9 3.5 37 23-60 21-57 (512)
80 COG0414 PanC Panthothenate syn 93.7 0.12 2.7E-06 38.7 4.3 36 24-60 24-59 (285)
81 PF02569 Pantoate_ligase: Pant 93.5 0.12 2.7E-06 38.5 4.0 36 24-60 24-59 (280)
82 PLN02341 pfkB-type carbohydrat 87.0 0.15 3.2E-06 39.9 -0.6 29 20-48 413-441 (470)
83 COG1519 KdtA 3-deoxy-D-manno-o 82.4 0.62 1.3E-05 36.7 1.0 34 22-59 319-352 (419)
84 KOG3042 Panthothenate syntheta 81.2 2.9 6.2E-05 30.9 4.0 38 21-60 24-61 (283)
85 PRK13354 tyrosyl-tRNA syntheta 72.6 25 0.00054 27.4 7.3 54 29-84 43-104 (410)
86 COG0528 PyrH Uridylate kinase 71.4 20 0.00043 26.4 6.1 37 20-56 124-161 (238)
87 COG1908 FrhD Coenzyme F420-red 57.5 40 0.00086 22.6 5.0 65 13-87 22-89 (132)
88 cd00395 Tyr_Trp_RS_core cataly 53.6 76 0.0017 23.2 6.6 20 29-48 9-28 (273)
89 PRK12418 cysteinyl-tRNA synthe 52.2 34 0.00075 26.6 4.7 43 16-58 5-54 (384)
90 PF02662 FlpD: Methyl-viologen 51.1 33 0.00072 22.3 3.9 67 12-87 20-88 (124)
91 PLN02486 aminoacyl-tRNA ligase 50.5 50 0.0011 25.7 5.3 44 29-77 83-129 (383)
92 COG0162 TyrS Tyrosyl-tRNA synt 48.4 62 0.0013 25.4 5.6 49 29-82 42-93 (401)
93 TIGR03447 mycothiol_MshC cyste 45.7 48 0.001 26.1 4.6 43 16-58 32-81 (411)
94 cd00805 TyrRS_core catalytic c 41.6 1.4E+02 0.0029 21.7 7.1 56 29-84 10-71 (269)
95 PF11069 DUF2870: Protein of u 37.7 1E+02 0.0022 19.7 4.4 35 50-86 27-61 (98)
96 PRK05912 tyrosyl-tRNA syntheta 37.5 2E+02 0.0043 22.4 7.0 52 29-82 43-102 (408)
97 KOG4238 Bifunctional ATP sulfu 37.4 20 0.00043 28.7 1.4 25 23-47 417-441 (627)
98 COG1505 Serine proteases of th 37.1 1E+02 0.0023 25.8 5.5 68 16-86 575-644 (648)
99 PF04978 DUF664: Protein of un 34.9 24 0.00051 23.3 1.3 12 34-45 137-148 (150)
100 PF14034 Spore_YtrH: Sporulati 34.3 10 0.00022 24.5 -0.5 10 24-33 50-59 (102)
101 cd00671 ArgRS_core catalytic c 32.8 15 0.00033 25.6 0.1 26 30-55 12-43 (212)
102 PF00750 tRNA-synt_1d: tRNA sy 29.2 26 0.00057 26.5 0.9 11 30-40 32-42 (354)
103 cd00802 class_I_aaRS_core cata 28.2 1.6E+02 0.0036 18.7 4.6 12 30-41 9-20 (143)
104 PF09334 tRNA-synt_1g: tRNA sy 27.3 77 0.0017 24.4 3.1 30 31-60 12-47 (391)
105 COG1533 SplB DNA repair photol 27.0 1.7E+02 0.0036 21.9 4.8 49 37-86 131-180 (297)
106 PRK14534 cysS cysteinyl-tRNA s 26.9 37 0.00081 27.2 1.4 31 24-54 24-62 (481)
107 TIGR00398 metG methionyl-tRNA 26.6 79 0.0017 24.9 3.2 31 29-59 10-46 (530)
108 cd00672 CysRS_core catalytic c 25.8 1.1E+02 0.0023 21.6 3.4 32 28-59 29-66 (213)
109 PF15643 Tox-PL-2: Papain fold 25.0 34 0.00074 22.0 0.7 23 15-37 66-88 (100)
110 COG1564 THI80 Thiamine pyropho 23.3 53 0.0011 23.6 1.5 24 24-48 99-122 (212)
111 PRK14535 cysS cysteinyl-tRNA s 23.0 1.5E+02 0.0031 25.3 4.1 36 21-56 249-291 (699)
112 TIGR00234 tyrS tyrosyl-tRNA sy 23.0 1.6E+02 0.0034 22.7 4.1 30 29-58 40-71 (377)
113 PRK12285 tryptophanyl-tRNA syn 23.0 1.5E+02 0.0034 22.8 4.1 31 32-62 78-110 (368)
114 PF00579 tRNA-synt_1b: tRNA sy 22.7 1.3E+02 0.0029 21.7 3.5 31 29-60 15-47 (292)
115 KOG3419 Mitochondrial/chloropl 22.7 35 0.00075 22.3 0.4 9 26-34 36-44 (112)
116 cd03130 GATase1_CobB Type 1 gl 22.5 1.9E+02 0.0042 19.8 4.2 42 19-60 39-85 (198)
117 cd00668 Ile_Leu_Val_MetRS_core 21.9 66 0.0014 23.5 1.8 30 30-59 12-47 (312)
118 PF00749 tRNA-synt_1c: tRNA sy 21.4 1.3E+02 0.0028 22.5 3.3 31 30-60 11-44 (314)
119 COG0018 ArgS Arginyl-tRNA synt 21.3 35 0.00075 28.0 0.2 19 21-39 117-138 (577)
120 cd00806 TrpRS_core catalytic c 21.2 3.3E+02 0.0071 19.9 5.4 31 32-62 11-44 (280)
121 PF07685 GATase_3: CobB/CobQ-l 21.0 1.5E+02 0.0033 19.5 3.3 43 17-59 4-51 (158)
122 KOG4395 Transcription factor A 20.7 34 0.00074 25.7 0.1 14 23-36 271-284 (285)
123 TIGR00233 trpS tryptophanyl-tR 20.6 2.1E+02 0.0046 21.5 4.3 31 32-62 14-46 (328)
124 PLN02946 cysteine-tRNA ligase 20.4 2E+02 0.0042 23.7 4.3 36 22-57 82-124 (557)
No 1
>PRK00777 phosphopantetheine adenylyltransferase; Provisional
Probab=99.82 E-value=5e-20 Score=125.18 Aligned_cols=64 Identities=33% Similarity=0.670 Sum_probs=56.8
Q ss_pred ccEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCcccccCCCCCCCCHHHHHHHHHHHHh
Q 034677 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIK 86 (87)
Q Consensus 21 ~~~v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~~l~ 86 (87)
|++|++||||||+|.||+.++++|++++ ++|+||+++|+.++.++. .++.|+++|++||+.|++
T Consensus 1 ~~~v~~gGtFDplH~GH~~ll~~A~~~~-d~livgi~~d~~~~~~K~-~~i~~~e~R~~~v~~~~~ 64 (153)
T PRK00777 1 MMKVAVGGTFDPLHDGHRALLRKAFELG-KRVTIGLTSDEFAKSYKK-HKVRPYEVRLKNLKKFLK 64 (153)
T ss_pred CcEEEEecccCCCCHHHHHHHHHHHHcC-CEEEEEEcCCccccccCC-CCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999999998 799999999987743222 689999999999999986
No 2
>cd02164 PPAT_CoAS phosphopantetheine adenylyltransferase domain of eukaryotic and archaeal bifunctional enzymes. The PPAT domain of the bifunctional enzyme with PPAT and DPCK functions. The final two steps of the CoA biosynthesis pathway are catalyzed by phosphopantetheine adenylyltransferase (PPAT) and dephospho-CoA (dPCoA) kinase (DPCK). The PPAT reaction involves the reversible adenylation of 4'-phosphopantetheine to form 3'-dPCoA and PPi, and DPCK catalyses phosphorylation of the 3'-hydroxy group of the ribose moiety of dPCoA. In eukaryotes the two enzymes are part of a large multienzyme complex . Studies in Corynebacterium ammoniagenes suggested that separate enzymes were present, and this was confirmed through identification of the bacterial PPAT/CoAD.
Probab=99.80 E-value=2.2e-19 Score=121.06 Aligned_cols=65 Identities=42% Similarity=0.831 Sum_probs=57.3
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCcccccCCCCCCCCHHHHHHHHHHHHhC
Q 034677 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKG 87 (87)
Q Consensus 23 ~v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~~l~~ 87 (87)
+|++||||||+|.||+.++.+|++++.++++||+++++++++|.....+.|+++|++++++|+++
T Consensus 1 ~v~~GGtFD~lH~GH~~Ll~~a~~~~~d~v~vgvt~d~~~~~k~~~~~i~s~e~R~~~l~~~l~~ 65 (143)
T cd02164 1 KVAVGGTFDRLHDGHKILLSVAFLLAGEKLIIGVTSDELLKNKSLKELIEPYEERIANLHEFLVD 65 (143)
T ss_pred CEEEcccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCchhcccCCCCCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999999998778999999998776664445789999999999999863
No 3
>PLN02388 phosphopantetheine adenylyltransferase
Probab=99.77 E-value=1.4e-18 Score=120.98 Aligned_cols=83 Identities=78% Similarity=1.270 Sum_probs=74.0
Q ss_pred cccccccccCCCCCCCcccEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCcccccCCCCCCCCHHHHHHHHHH
Q 034677 4 AILDESVVNSNISPDNSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEA 83 (87)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~ 83 (87)
.--.|+++.++.++.+.+..|++|||||.+|.||..|+.+|++++.+.++||+++++.+.++.....+.|+++|.+.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~Vv~gGtFDgLH~GHq~LL~~A~~~a~~~vvIgft~~p~l~~k~~~~~I~~~e~R~~~l~~ 81 (177)
T PLN02388 2 VTVKDSVADSKLSPPNSYGAVVLGGTFDRLHDGHRLFLKAAAELARDRIVIGVCDGPMLSKKQFAELIQPIEERMHNVEE 81 (177)
T ss_pred cccccccccccCCCCCcCCeEEEEecCCccCHHHHHHHHHHHHhhhcCEEEecCCChhhcccCCCcccCCHHHHHHHHHH
Confidence 34467888889999999999999999999999999999999999867899999999987655446789999999999999
Q ss_pred HHh
Q 034677 84 YIK 86 (87)
Q Consensus 84 ~l~ 86 (87)
||+
T Consensus 82 fl~ 84 (177)
T PLN02388 82 YIK 84 (177)
T ss_pred HHH
Confidence 996
No 4
>COG1019 Predicted nucleotidyltransferase [General function prediction only]
Probab=99.75 E-value=1.5e-18 Score=118.23 Aligned_cols=67 Identities=36% Similarity=0.718 Sum_probs=61.4
Q ss_pred CCcccEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCcccccCCCCCCCCHHHHHHHHHHHHh
Q 034677 18 DNSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIK 86 (87)
Q Consensus 18 ~~~~~~v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~~l~ 86 (87)
..+++++++|||||++|.||..||..|.+.| +++++|+|+|++++.+ +.+.+.|++.|++.|.+|+.
T Consensus 2 ~~kfm~vavGGTFd~LH~GHk~LL~~A~~~G-~~v~IGlTsDe~~k~~-k~~~i~p~~~R~~~l~~fl~ 68 (158)
T COG1019 2 KIKFMKVAVGGTFDRLHDGHKKLLEVAFEIG-DRVTIGLTSDELAKKK-KKEKIEPYEVRLRNLRNFLE 68 (158)
T ss_pred CccceEEEecccchhhhhhHHHHHHHHHHhC-CeEEEEEccHHHHHHh-ccccCCcHHHHHHHHHHHHH
Confidence 3578899999999999999999999999999 7999999999999764 34889999999999999986
No 5
>PRK00168 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=99.74 E-value=7.2e-18 Score=114.65 Aligned_cols=59 Identities=22% Similarity=0.437 Sum_probs=52.7
Q ss_pred ccEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCcccccCCCCCCCCHHHHHHHHHHHHh
Q 034677 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIK 86 (87)
Q Consensus 21 ~~~v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~~l~ 86 (87)
|+++++||||||+|.||+.++++|++.+ |+|++++++++ .| .+..|+++|++|++.+++
T Consensus 1 ~~igi~gGsFdP~H~GHl~~~~~a~~~~-d~v~v~~~~~~---~k---~~~~~~~~R~~ml~~a~~ 59 (159)
T PRK00168 1 MKIAIYPGSFDPITNGHLDIIERASRLF-DEVIVAVAINP---SK---KPLFSLEERVELIREATA 59 (159)
T ss_pred CcEEEEeeecCCCCHHHHHHHHHHHHHC-CEEEEEECCCC---CC---CCCCCHHHHHHHHHHHHc
Confidence 5789999999999999999999999999 89999998764 23 468999999999999775
No 6
>TIGR00125 cyt_tran_rel cytidyltransferase-related domain. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate.
Probab=99.74 E-value=1.1e-17 Score=97.69 Aligned_cols=62 Identities=31% Similarity=0.456 Sum_probs=52.3
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCcccccCCCCCCCCHHHHHHHHHHHHh
Q 034677 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIK 86 (87)
Q Consensus 23 ~v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~~l~ 86 (87)
+++++|+|||+|.||+.++++|++.+ +.++|++.+++..+..+. .++.+.++|.+|++++..
T Consensus 1 i~~~~G~Fdp~H~GH~~~l~~a~~~~-~~~vv~i~~~~~~~~~~~-~~~~~~~~R~~~~~~~~~ 62 (66)
T TIGR00125 1 RVIFVGTFDPFHLGHLDLLERAKELF-DELIVGVGSDQFVNPLKG-EPVFSLEERLEMLKALKY 62 (66)
T ss_pred CEEEcCccCCCCHHHHHHHHHHHHhC-CEEEEEECchHhccccCC-CCCCCHHHHHHHHHHhcc
Confidence 58999999999999999999999999 488899988765543321 389999999999998764
No 7
>PRK13964 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=99.74 E-value=1.1e-17 Score=112.77 Aligned_cols=59 Identities=32% Similarity=0.515 Sum_probs=52.6
Q ss_pred ccEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCcccccCCCCCCCCHHHHHHHHHHHHh
Q 034677 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIK 86 (87)
Q Consensus 21 ~~~v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~~l~ 86 (87)
|+++++||||||+|.||+.++++|.+++ |+|+|+++.++ .| .+..|+++|++|+++.++
T Consensus 1 mkiai~~GSFDPih~GHl~ii~~A~~~~-D~v~v~v~~np---~K---~~~~s~e~R~~~l~~~~~ 59 (140)
T PRK13964 1 MKIAIYPGSFDPFHKGHLNILKKALKLF-DKVYVVVSINP---DK---SNASDLDSRFKNVKNKLK 59 (140)
T ss_pred CeEEEEeeeeCCCCHHHHHHHHHHHHhC-CEEEEEeccCC---CC---CCCCCHHHHHHHHHHHHc
Confidence 4689999999999999999999999999 89999998774 34 468999999999998875
No 8
>KOG3351 consensus Predicted nucleotidyltransferase [General function prediction only]
Probab=99.72 E-value=2.7e-18 Score=125.01 Aligned_cols=74 Identities=50% Similarity=0.886 Sum_probs=69.7
Q ss_pred CCCCCCCcccEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCcccccCCCCCCCCHHHHHHHHHHHHh
Q 034677 13 SNISPDNSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIK 86 (87)
Q Consensus 13 ~~~~~~~~~~~v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~~l~ 86 (87)
.+.+|.+++.++.+|||||.+|.||..||..|++++.++++||+++++++++|..++.++|+++|++-|.+|++
T Consensus 134 e~~~~a~~~~~~alGGTFDrLH~gHKvLLs~aa~la~~~lVvGV~d~elL~kK~~~Eliepie~R~~~V~~Fl~ 207 (293)
T KOG3351|consen 134 EKSGPANKFMVVALGGTFDRLHDGHKVLLSVAAELASDRLVVGVTDDELLKKKVLKELIEPIEERKEHVSNFLK 207 (293)
T ss_pred ccccchhcceeEEeccchhhhccchHHHHHHHHHHhhceEEEEecChHHHHHhHHHHHhhhHHHHHHHHHHHHH
Confidence 46678899999999999999999999999999999999999999999999888878999999999999999986
No 9
>cd02173 ECT CTP:phosphoethanolamine cytidylyltransferase (ECT). CTP:phosphoethanolamine cytidylyltransferase (ECT) catalyzes the conversion of phosphoethanolamine to CDP-ethanolamine as part of the CDP-ethanolamine biosynthesis pathway. ECT expression in hepatocytes is localized predominantly to areas of the cytoplasm that are rich in rough endoplasmic reticulum. Several ECTs, including yeast and human ECT, have large repetitive sequences located within their N- and C-termini.
Probab=99.72 E-value=1.3e-17 Score=113.18 Aligned_cols=61 Identities=36% Similarity=0.480 Sum_probs=53.9
Q ss_pred cEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCccc-ccCCCCCCCCHHHHHHHHHH
Q 034677 22 GAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLT-NKQFAELIQPVDERMRNVEA 83 (87)
Q Consensus 22 ~~v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~~~-~k~~~~~i~~~~~R~~~v~~ 83 (87)
++|+++|+||++|.||+.++++|++++ |+|+||+++|+.+. .|....|++|+++|.++|+.
T Consensus 3 ~iv~~~G~FD~~H~GHi~~L~~A~~lg-d~liVgV~~D~~~~~~K~~~~pi~~~~eR~~~v~~ 64 (152)
T cd02173 3 KVVYVDGAFDLFHIGHIEFLEKARELG-DYLIVGVHDDQTVNEYKGSNYPIMNLHERVLSVLA 64 (152)
T ss_pred eEEEEcCcccCCCHHHHHHHHHHHHcC-CEEEEEEeCcHHHHhhcCCCCCCCCHHHHHHHHHh
Confidence 689999999999999999999999998 89999999998764 34334699999999999965
No 10
>COG1057 NadD Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=99.72 E-value=3e-17 Score=115.80 Aligned_cols=65 Identities=22% Similarity=0.343 Sum_probs=58.0
Q ss_pred cccEEEEcccCCCCCHHHHHHHHHHHHHhc-CeEEEEEcCCCcccccCCCCCCCCHHHHHHHHHHHHhC
Q 034677 20 SYGAVVLGGTFDRLHDGHRLFLKASAELAR-DRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKG 87 (87)
Q Consensus 20 ~~~~v~~gGtFDplH~GHl~ll~~a~~~~~-d~vivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~~l~~ 87 (87)
.+++++|||||||+|.||+.++++|++..+ |+|++.++..++++.+ +...|.++|++|++.++++
T Consensus 2 ~~~i~lfGGsFdP~H~GHl~ia~~~~~~l~ld~vi~~ps~~~p~k~~---~~~a~~~~R~~Ml~la~~~ 67 (197)
T COG1057 2 MKKIALFGGSFDPPHYGHLLIAEEALDQLGLDKVIFLPSPVPPHKKK---KELASAEHRLAMLELAIED 67 (197)
T ss_pred CceEEEeccCCCCCCHHHHHHHHHHHHhcCCCeEEEecCCCCCCCCC---ccCCCHHHHHHHHHHHHhc
Confidence 478999999999999999999999999985 8999999999887543 5689999999999998864
No 11
>PRK01170 phosphopantetheine adenylyltransferase/unknown domain fusion protein; Provisional
Probab=99.71 E-value=1.8e-17 Score=124.18 Aligned_cols=62 Identities=34% Similarity=0.655 Sum_probs=55.3
Q ss_pred cEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCcccccCCCCCCCCHHHHHHHHHHHHh
Q 034677 22 GAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIK 86 (87)
Q Consensus 22 ~~v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~~l~ 86 (87)
.+|++|||||++|.||+.||++|++++ |+|+||+++|+++.+++ ..+ .|+++|+++|++||+
T Consensus 1 ~~V~vgGTFD~lH~GH~~lL~~A~~~g-d~LiVgvt~D~~~~~~k-~~~-~~~e~R~~~v~~fl~ 62 (322)
T PRK01170 1 MITVVGGTFSKLHKGHKALLKKAIETG-DEVVIGLTSDEYVRKNK-VYP-IPYEDRKRKLENFIK 62 (322)
T ss_pred CEEEEccccccCChHHHHHHHHHHHcC-CEEEEEEccHHHHHhcC-CCC-CCHHHHHHHHHHHHH
Confidence 379999999999999999999999988 89999999999886433 256 999999999999985
No 12
>TIGR01510 coaD_prev_kdtB pantetheine-phosphate adenylyltransferase, bacterial. This model describes pantetheine-phosphate adenylyltransferase, the penultimate enzyme of coenzyme A (CoA) biosynthesis in bacteria. It does not show any strong homology to eukaryotic enzymes of coenzyme A biosynthesis. This protein was previously designated KdtB and postulated (because of cytidyltransferase homology and proximity to kdtA) to be an enzyme of LPS biosynthesis, a cytidyltransferase for 3-deoxy-D-manno-2-octulosonic acid. However, no activity toward that compound was found with either CTP or ATP. The phylogenetic distribution of this enzyme is more consistent with coenzyme A biosynthesis than with LPS biosynthesis.
Probab=99.69 E-value=8.7e-17 Score=108.82 Aligned_cols=57 Identities=26% Similarity=0.454 Sum_probs=49.8
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCcccccCCCCCCCCHHHHHHHHHHHHh
Q 034677 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIK 86 (87)
Q Consensus 23 ~v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~~l~ 86 (87)
++++||||||+|.||+.++++|++.+ |+|+++|+.+ + .| .+..|+++|++|++..++
T Consensus 1 i~l~gGsFdP~H~GHl~l~~~a~~~~-d~v~~~~~~~-p--~k---~~~~~~~~R~~m~~~a~~ 57 (155)
T TIGR01510 1 IALYPGSFDPVTNGHLDIIKRAAALF-DEVIVAVAKN-P--SK---KPLFSLEERVELIKDATK 57 (155)
T ss_pred CEEEEeecCCCcHHHHHHHHHHHHhC-CEEEEEEcCC-C--CC---CCCcCHHHHHHHHHHHHh
Confidence 58999999999999999999999998 8999999854 2 23 357899999999999875
No 13
>cd02163 PPAT Phosphopantetheine adenylyltransferase. Phosphopantetheine adenylyltransferase (PPAT). PPAT is an essential enzyme in bacteria, responsible for catalyzing the rate-limiting step in coenzyme A (CoA) biosynthesis. The dinucleotide-binding fold of PPAT is homologous to class I aminoacyl-tRNA synthetases. CoA has been shown to inhibit PPAT and competes with ATP, PhP, and dPCoA. PPAT is a homohexamer in E. coli.
Probab=99.69 E-value=9.4e-17 Score=108.55 Aligned_cols=57 Identities=26% Similarity=0.493 Sum_probs=50.6
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCcccccCCCCCCCCHHHHHHHHHHHHh
Q 034677 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIK 86 (87)
Q Consensus 23 ~v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~~l~ 86 (87)
+++|||||||+|.||+.++++|.+.+ |+|++++++++ .| .+..+.++|++|++.+++
T Consensus 1 i~i~gGsFdP~H~GHl~l~~~a~~~~-d~v~v~~~~~~---~k---~~~~~~~~R~~ml~~a~~ 57 (153)
T cd02163 1 IAVYPGSFDPITNGHLDIIERASKLF-DEVIVAVAVNP---SK---KPLFSLEERVELIREATK 57 (153)
T ss_pred CEEEEeccCCCCHHHHHHHHHHHHHC-CEEEEEEcCCC---CC---CCCCCHHHHHHHHHHHHc
Confidence 47999999999999999999999998 89999998764 23 468999999999999875
No 14
>cd02167 NMNAT_NadR Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional NadR-like proteins. NMNAT domain of NadR protein. The NadR protein (NadR) is a bifunctional enzyme possessing both NMN adenylytransferase (NMNAT) and ribosylnicotinamide kinase (RNK) activities. Its function is essential for the growth and survival of H. influenzae and thus may present a new highly specific anti-infectious drug target. The N-terminal domain that hosts the NMNAT activity is closely related to archaeal NMNAT. The bound NAD at the active site of the NMNAT domain reveals several critical interactions between NAD and the protein.The NMNAT domain of hiNadR defines yet another member of the pyridine nucleotide adenylyltransferase
Probab=99.68 E-value=1.5e-16 Score=108.47 Aligned_cols=61 Identities=18% Similarity=0.303 Sum_probs=53.2
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCcccccCCCCCCCCHHHHHHHHHHHHhC
Q 034677 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKG 87 (87)
Q Consensus 23 ~v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~~l~~ 87 (87)
++++||+|||+|.||+.++++|++.+ |+|+|+|++.+..+.+ +...|.++|++|++..+++
T Consensus 1 igl~~G~F~P~H~GHl~li~~a~~~~-d~v~vi~~~~~~~~~~---~~~~~~~~R~~mi~~a~~~ 61 (158)
T cd02167 1 IGIVFGKFAPLHTGHVYLIYKALSQV-DELLIIVGSDDTRDDA---RTGLPLEKRLRWLREIFPD 61 (158)
T ss_pred CEEEeeccCCCCHHHHHHHHHHHHHC-CEEEEEECCCCccccc---CCCCCHHHHHHHHHHHhcC
Confidence 47899999999999999999999998 8999999998765433 4567999999999998763
No 15
>cd02174 CCT CTP:phosphocholine cytidylyltransferase. CTP:phosphocholine cytidylyltransferase (CCT) catalyzes the condensation of CTP and phosphocholine to form CDP-choline as the rate-limiting and regulatory step in the CDP-choline pathway. CCT is unique in that its enzymatic activity is regulated by the extent of its association with membrane structures. A current model posts that the elastic stress of the bilayer curvature is sensed by CCT and this governs the degree of membrane association, thus providing a mechanism for both positive and negative regulation of activity.
Probab=99.68 E-value=1.1e-16 Score=108.60 Aligned_cols=61 Identities=28% Similarity=0.421 Sum_probs=53.7
Q ss_pred cEEEEcccCCCCCHHHHHHHHHHHHHh-cCeEEEEEcCCCccc-ccCCCCCCCCHHHHHHHHHHH
Q 034677 22 GAVVLGGTFDRLHDGHRLFLKASAELA-RDRIVVGVCDGPMLT-NKQFAELIQPVDERMRNVEAY 84 (87)
Q Consensus 22 ~~v~~gGtFDplH~GHl~ll~~a~~~~-~d~vivgv~~d~~~~-~k~~~~~i~~~~~R~~~v~~~ 84 (87)
.+|+++|+||++|.||+.+|++|++++ +|+|+||+++|+.+. +|+ .|++|+++|.++|++.
T Consensus 3 ~rV~~~G~FDl~H~GHi~~L~~A~~lg~~d~LiVgV~sD~~~~~~k~--~pi~~~~eR~~~l~~~ 65 (150)
T cd02174 3 VRVYVDGCFDLFHYGHANALRQAKKLGPNDYLIVGVHSDEEIHKHKG--PPVMTEEERYEAVRHC 65 (150)
T ss_pred eEEEEeCccCCCCHHHHHHHHHHHHhCCCCEEEEEEecCHHHhhcCC--CCcCCHHHHHHHHHhc
Confidence 579999999999999999999999998 269999999998775 343 4999999999999854
No 16
>PRK06973 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=99.66 E-value=4.2e-16 Score=112.75 Aligned_cols=63 Identities=24% Similarity=0.368 Sum_probs=54.7
Q ss_pred CcccEEEEcccCCCCCHHHHHHHHHHHHHhc-CeEEEEEcCCCcccccCCCCCCCCHHHHHHHHHHHHh
Q 034677 19 NSYGAVVLGGTFDRLHDGHRLFLKASAELAR-DRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIK 86 (87)
Q Consensus 19 ~~~~~v~~gGtFDplH~GHl~ll~~a~~~~~-d~vivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~~l~ 86 (87)
..+++++|||||||+|.||+.++++|.+... |+|++.++.+++.| ....+.++|++|++..++
T Consensus 20 ~~~~IgifGGSFdPiH~GHl~ia~~~~~~l~ld~v~~iP~~~pp~K-----~~~~~~~~Rl~M~~lAi~ 83 (243)
T PRK06973 20 RPRRIGILGGTFDPIHDGHLALARRFADVLDLTELVLIPAGQPWQK-----ADVSAAEHRLAMTRAAAA 83 (243)
T ss_pred CCceEEEECCCCCCCcHHHHHHHHHHHHHcCCCEEEEEECCcCCCC-----CCCCCHHHHHHHHHHHHH
Confidence 4467899999999999999999999999975 89999999887643 346799999999998876
No 17
>PF01467 CTP_transf_2: Cytidylyltransferase; InterPro: IPR004820 This family includes []: Cholinephosphate cytidyltransferase (P49585 from SWISSPROT). Glycerol-3-phosphate cytidyltransferase (P27623 from SWISSPROT). CTP:cholinephosphate cytidylyltransferase (CCT) is a key regulatory enzyme in phosphatidylcholine biosynthesis that catalyzes the formation of CDP-choline. A comparison of the catalytic domains of CCTs from a wide variety of organisms reveals a large number of completely conserved residues. There may be a role for the conserved HXGH sequence in catalysis. The membrane-binding domain in rat CCT has been defined, and it has been suggested that lipids may play a role in inactivating the enzyme. A phosphorylation domain has been described [].; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1O6B_A 1H1T_A 1B6T_A 1GN8_A 1QJC_A 3ELB_A 3NBK_A 3NBA_A 1TFU_A 3LCJ_A ....
Probab=99.64 E-value=3.3e-16 Score=101.92 Aligned_cols=59 Identities=31% Similarity=0.498 Sum_probs=42.5
Q ss_pred EEcccCCCCCHHHHHHHHHHHHHhcC-eEEEEEcCCCcccccCCCCCCCCHHHHHHHHHHHHh
Q 034677 25 VLGGTFDRLHDGHRLFLKASAELARD-RIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIK 86 (87)
Q Consensus 25 ~~gGtFDplH~GHl~ll~~a~~~~~d-~vivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~~l~ 86 (87)
+|||||||+|.||+.++++|++.++. .+++.++..++.+.+ .+..|+++|++|++.+++
T Consensus 1 l~~GsFdP~H~GH~~~l~~a~~~~~~~~vi~v~~~~~~~k~~---~~~~~~~~R~~ml~~~~~ 60 (157)
T PF01467_consen 1 LFGGSFDPPHNGHLNLLREARELFDEDLVIVVPSDNSPHKDK---KPIFSFEERLEMLRAAFK 60 (157)
T ss_dssp EEEE--TT--HHHHHHHHHHHHHSSESEEEEEEEEHHCHSTT---SSSSTHHHHHHHHHHHHT
T ss_pred CeeeEcCcccHHHHHHHHHHHHhccccccccccccccccccc---cccCcHHHHHHHHHHHHh
Confidence 68999999999999999999999942 355555444443322 378999999999999875
No 18
>PRK00071 nadD nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=99.64 E-value=1.4e-15 Score=106.40 Aligned_cols=65 Identities=26% Similarity=0.348 Sum_probs=54.7
Q ss_pred cccEEEEcccCCCCCHHHHHHHHHHHHHhc-CeEEEEEcCCCcccccCCCCCCCCHHHHHHHHHHHHhC
Q 034677 20 SYGAVVLGGTFDRLHDGHRLFLKASAELAR-DRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKG 87 (87)
Q Consensus 20 ~~~~v~~gGtFDplH~GHl~ll~~a~~~~~-d~vivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~~l~~ 87 (87)
.+++++|||||||+|.||+.+++.|++..+ +.+++.++..++.+.+ ....|.++|++|++.++++
T Consensus 3 ~~~i~i~gGsFdP~H~GH~~l~~~a~~~~~~d~v~~~p~~~~~~k~~---~~~~~~~~R~~m~~~a~~~ 68 (203)
T PRK00071 3 MKRIGLFGGTFDPPHYGHLAIAEEAAERLGLDEVWFLPNPGPPHKPQ---KPLAPLEHRLAMLELAIAD 68 (203)
T ss_pred CcEEEEEeeCCCccCHHHHHHHHHHHHHcCCCEEEEEeCCCCCCCCC---CCCCCHHHHHHHHHHHhcC
Confidence 457899999999999999999999998774 7899999887765422 3578999999999998763
No 19
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=99.63 E-value=1.1e-15 Score=114.24 Aligned_cols=63 Identities=19% Similarity=0.308 Sum_probs=53.4
Q ss_pred ccEEEEcccCCCCCHHHHHHHHHHHHHhc-CeEEEEEcCCCcccccCCCCCCCCHHHHHHHHHHHHh
Q 034677 21 YGAVVLGGTFDRLHDGHRLFLKASAELAR-DRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIK 86 (87)
Q Consensus 21 ~~~v~~gGtFDplH~GHl~ll~~a~~~~~-d~vivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~~l~ 86 (87)
|++++|||||||+|.||+.+++.|.+..+ |+|++.|+.+++.|.+ ....+.++|++|++.+++
T Consensus 1 m~i~i~gGsFdP~H~GHl~la~~a~~~~~~d~v~~~p~~~~p~K~~---~~~~~~~~R~~m~~~a~~ 64 (342)
T PRK07152 1 MKIAIFGGSFDPIHKGHINIAKKAIKKLKLDKLFFVPTYINPFKKK---QKASNGEHRLNMLKLALK 64 (342)
T ss_pred CeEEEEeeCCCCcCHHHHHHHHHHHHHhCCCEEEEEeCCCCCCCCC---CCCCCHHHHHHHHHHHHh
Confidence 57899999999999999999999998854 8999999988775422 345666999999998875
No 20
>PRK08887 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=99.63 E-value=1.1e-15 Score=105.41 Aligned_cols=60 Identities=17% Similarity=0.244 Sum_probs=48.3
Q ss_pred ccEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCcccccCCCCCCCCHHHHHHHHHHHHhC
Q 034677 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKG 87 (87)
Q Consensus 21 ~~~v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~~l~~ 87 (87)
+++++|||||||+|.||+.+++++ ... |+|++.|+...+. + +...|+++|++|++..+++
T Consensus 2 ~~i~ifGGSFDP~H~GHl~ia~~~-~~~-d~v~~vP~~~~~~--~---k~~~~~~~R~~M~~~ai~~ 61 (174)
T PRK08887 2 KKIAVFGSAFNPPSLGHKSVIESL-SHF-DLVLLVPSIAHAW--G---KTMLDYETRCQLVDAFIQD 61 (174)
T ss_pred CeEEEeCCCCCCCCHHHHHHHHHh-hcC-CEEEEEECCCCcc--c---CCCCCHHHHHHHHHHHHhc
Confidence 368999999999999999999985 344 8999999874321 2 2467999999999988763
No 21
>cd02166 NMNAT_Archaea Nicotinamide/nicotinate mononucleotide adenylyltransferase, archaeal. This family of archaeal proteins exhibits nicotinamide-nucleotide adenylyltransferase (NMNAT) activity utilizing the salvage pathway to synthesize NAD. In some cases, the enzyme was tested and found also to have the activity of nicotinate-nucleotide adenylyltransferase an enzyme of NAD de novo biosynthesis, although with a higher Km. In some archaeal species, a number of proteins which are uncharacterized with respect to activity, are also present.
Probab=99.63 E-value=1.4e-15 Score=103.86 Aligned_cols=60 Identities=20% Similarity=0.266 Sum_probs=49.1
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCcccccCCCCCCCCHHHHHHHHHHHHh
Q 034677 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIK 86 (87)
Q Consensus 23 ~v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~~l~ 86 (87)
+++|||+|||+|.||+.++++|++.+ |+|+|++.++.... +. ..-.++++|++|++..++
T Consensus 1 ~~v~~G~FdP~H~GHl~~i~~a~~~~-d~l~v~v~s~~~~~-~~--~~~~~~~~R~~mi~~~~~ 60 (163)
T cd02166 1 RALFIGRFQPFHLGHLKVIKWILEEV-DELIIGIGSAQESH-TL--ENPFTAGERVLMIRRALE 60 (163)
T ss_pred CeEEeeccCCCCHHHHHHHHHHHHHC-CEEEEEecCCCCCC-CC--CCCCCHHHHHHHHHHHHH
Confidence 47999999999999999999999998 89999986654322 21 334788999999998765
No 22
>COG0615 TagD Cytidylyltransferase [Cell envelope biogenesis, outer membrane / Lipid metabolism]
Probab=99.62 E-value=4.2e-16 Score=105.11 Aligned_cols=61 Identities=31% Similarity=0.491 Sum_probs=51.7
Q ss_pred cEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCcccccCCCCCCCCHHHHHHHHHH
Q 034677 22 GAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEA 83 (87)
Q Consensus 22 ~~v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~ 83 (87)
.+|+.+||||.+|+||+++|++|.++| +.++|++..|+...+...+.|++|.++|.++|+.
T Consensus 2 ~rV~~~GtFDilH~GHi~~L~~Ak~lG-d~liVv~a~de~~~~~~k~~pi~~~~qR~evl~s 62 (140)
T COG0615 2 KRVWADGTFDILHPGHIEFLRQAKKLG-DELIVVVARDETVIKRKKRKPIMPEEQRAEVLES 62 (140)
T ss_pred cEEEEeeEEEEechhHHHHHHHHHHhC-CeEEEEEeccHHHHHhcCCCCCCCHHHHHHHHHc
Confidence 469999999999999999999999999 7888888777766431124899999999999875
No 23
>PTZ00308 ethanolamine-phosphate cytidylyltransferase; Provisional
Probab=99.62 E-value=1.3e-15 Score=115.31 Aligned_cols=66 Identities=30% Similarity=0.450 Sum_probs=56.7
Q ss_pred CCCcccEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCccc-ccCCCCCCCCHHHHHHHHHH
Q 034677 17 PDNSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLT-NKQFAELIQPVDERMRNVEA 83 (87)
Q Consensus 17 ~~~~~~~v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~~~-~k~~~~~i~~~~~R~~~v~~ 83 (87)
|....++|+++|+||++|.||+.+|++|+++| |+|+|||++|+.+. .|....|+++.++|..+|..
T Consensus 188 ~~~~~kiv~~~G~FDl~H~GHi~~L~~A~~lg-d~LIVgV~sD~~v~~~Kg~~~Pi~~~~eR~~~v~a 254 (353)
T PTZ00308 188 PKPGDRIVYVDGSFDLFHIGHIRVLQKARELG-DYLIVGVHEDQVVNEQKGSNYPIMNLNERVLGVLS 254 (353)
T ss_pred CCCCCeEEEECCccCCCCHHHHHHHHHHHHhC-CEEEEEEcchHHhHhhcCCCCCCCCHHHHHHHHHh
Confidence 33446899999999999999999999999998 89999999998664 44434699999999999964
No 24
>TIGR01527 arch_NMN_Atrans nicotinamide-nucleotide adenylyltransferase. In some archaeal species, a lower-scoring paralog, uncharacterized with respect to activity, is also present. These score between trusted and noise cutoffs.
Probab=99.62 E-value=1.7e-15 Score=104.22 Aligned_cols=60 Identities=23% Similarity=0.305 Sum_probs=49.3
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCcccccCCCCCCCCHHHHHHHHHHHHh
Q 034677 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIK 86 (87)
Q Consensus 23 ~v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~~l~ 86 (87)
++++||+|||+|.||+.++++|++.+ |+|+|++.+++. ++|. ..-.+.++|++|++..++
T Consensus 1 rgl~~G~FdP~H~GHl~ii~~a~~~~-D~lii~i~s~~~-~~k~--~~p~~~~eR~~mi~~al~ 60 (165)
T TIGR01527 1 RGFYIGRFQPFHLGHLEVIKKIAEEV-DELIIGIGSAQE-SHTL--ENPFTAGERILMITQSLK 60 (165)
T ss_pred CeEEEeccCCCCHHHHHHHHHHHHHC-CEEEEEEcCCCC-CCCC--CCCCCHHHHHHHHHHHHh
Confidence 47899999999999999999999998 899999877654 2222 234567999999988775
No 25
>COG0669 CoaD Phosphopantetheine adenylyltransferase [Coenzyme metabolism]
Probab=99.62 E-value=1.4e-15 Score=104.05 Aligned_cols=59 Identities=27% Similarity=0.455 Sum_probs=53.9
Q ss_pred ccEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCcccccCCCCCCCCHHHHHHHHHHHHh
Q 034677 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIK 86 (87)
Q Consensus 21 ~~~v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~~l~ 86 (87)
++++++.|||||+++||+.++++|..++ |+|+|+|..++. | .|..|+++|++++++.++
T Consensus 2 ~~iavypGSFDPiTnGHlDii~RA~~~F-d~viVaV~~np~---K---~plFsleER~~l~~~~~~ 60 (159)
T COG0669 2 MKIAVYPGSFDPITNGHLDIIKRASALF-DEVIVAVAINPS---K---KPLFSLEERVELIREATK 60 (159)
T ss_pred CeeEEeCCCCCCCccchHHHHHHHHHhc-cEEEEEEEeCCC---c---CCCcCHHHHHHHHHHHhc
Confidence 6799999999999999999999999999 899999988753 4 689999999999998764
No 26
>PLN02406 ethanolamine-phosphate cytidylyltransferase
Probab=99.62 E-value=1.3e-15 Score=117.43 Aligned_cols=63 Identities=33% Similarity=0.492 Sum_probs=56.1
Q ss_pred CCcccEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCccc-ccCCCCCCCCHHHHHHHHHH
Q 034677 18 DNSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLT-NKQFAELIQPVDERMRNVEA 83 (87)
Q Consensus 18 ~~~~~~v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~~~-~k~~~~~i~~~~~R~~~v~~ 83 (87)
.++..+|+++||||++|.||+++|++|+++| |+|+|||++|+.+. +|+ .|++|+++|+++|+.
T Consensus 50 ~~~~~rV~~~G~FDllH~GH~~~L~qAk~lG-d~LIVGV~SDe~i~~~Kg--~PV~~~eER~~~v~a 113 (418)
T PLN02406 50 KKKPVRVYMDGCFDMMHYGHANALRQARALG-DELVVGVVSDEEIIANKG--PPVTPMHERMIMVSG 113 (418)
T ss_pred CCCceEEEEcCeeCCCCHHHHHHHHHHHHhC-CEEEEEEecChhhhccCC--CCcCCHHHHHHHHHh
Confidence 3445689999999999999999999999999 89999999998774 553 699999999999976
No 27
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=99.61 E-value=2.2e-15 Score=112.29 Aligned_cols=62 Identities=23% Similarity=0.243 Sum_probs=53.5
Q ss_pred ccEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCcccccCCCCCCCCHHHHHHHHHHHHh
Q 034677 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIK 86 (87)
Q Consensus 21 ~~~v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~~l~ 86 (87)
|+++++||||||+|.||+.++++|+.++ |+|+|+|++.++.+++ .+..|.++|++|++..++
T Consensus 1 ~~i~i~~GsFdP~H~GHl~ii~~a~~~~-d~v~v~~~~~~~~~~~---~~~~~~~~R~~~l~~~~~ 62 (325)
T TIGR01526 1 KTIGVVFGKFYPLHTGHIYLIYEAFSKV-DELHIVVGSLFYDSKA---KRPPPVQDRLRWLREIFK 62 (325)
T ss_pred CcEEEEeeccCCCCHHHHHHHHHHHHHC-CEEEEEECCCCcCccC---CCCCCHHHHHHHHHHHhc
Confidence 4689999999999999999999999998 8999999886544322 567899999999998875
No 28
>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain. N-terminal NMNAT (Nicotinamide/nicotinate mononucleotide adenylyltransferase) domain of a novel bifunctional enzyme endowed with NMN adenylyltransferase and Nudix hydrolase activities. This domain is highly homologous to the archeal NMN adenyltransferase that catalyzes NAD synthesis from NMN and ATP. NMNAT is an essential enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. The C-terminal domain of this enzyme shares homology with the archaeal ADP-ribose pyrophosphatase, a member of the 'Nudix' hydrolase family.
Probab=99.61 E-value=2.5e-15 Score=104.51 Aligned_cols=60 Identities=22% Similarity=0.290 Sum_probs=51.3
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCcccccCCCCCCCCHHHHHHHHHHHHhC
Q 034677 24 VVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKG 87 (87)
Q Consensus 24 v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~~l~~ 87 (87)
++|||+|||+|.||+.++++|++.+ ++|+|++.+.+..+.+ +...++++|++|++..+++
T Consensus 2 ~l~~GrF~P~H~GHl~~i~~a~~~~-~~vii~i~s~~~~~~~---~~p~~~~eR~~mi~~~~~~ 61 (181)
T cd02168 2 LVYIGRFQPFHNGHLAVVLIALEKA-KKVIILIGSARTARNI---KNPWTSEEREVMIEAALSD 61 (181)
T ss_pred eEEeeccCCCCHHHHHHHHHHHHHC-CeEEEEeCCCCCCCCC---CCCcCHHHHHHHHHHHHhc
Confidence 6899999999999999999999999 6999999887554443 2458999999999998753
No 29
>TIGR00482 nicotinate (nicotinamide) nucleotide adenylyltransferase. This model represents the predominant bacterial/eukaryotic adenylyltransferase for nicotinamide-nucleotide, its deamido form nicotinate nucleotide, or both. The first activity, nicotinamide-nucleotide adenylyltransferase (EC 2.7.7.1), synthesizes NAD by the salvage pathway, while the second, nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) synthesizes the immediate precursor of NAD by the de novo pathway. In E. coli, NadD activity is biased toward the de novo pathway while salvage activity is channeled through the multifunctional NadR protein, but this division of labor may be exceptional. The given name of this model, nicotinate (nicotinamide) nucleotide adenylyltransferase, reflects the lack of absolute specificity with respect to substrate amidation state in most species.
Probab=99.61 E-value=2.2e-15 Score=104.77 Aligned_cols=59 Identities=20% Similarity=0.378 Sum_probs=50.5
Q ss_pred EEcccCCCCCHHHHHHHHHHHHHhc-CeEEEEEcCCCcccccCCCCCCCCHHHHHHHHHHHHh
Q 034677 25 VLGGTFDRLHDGHRLFLKASAELAR-DRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIK 86 (87)
Q Consensus 25 ~~gGtFDplH~GHl~ll~~a~~~~~-d~vivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~~l~ 86 (87)
+|||||||+|.||+.+++.|.+..+ |++++.++.+++.+.+ ....|+++|++|++..++
T Consensus 1 i~gGsFdP~H~GHl~l~~~a~~~~~~d~v~~~p~~~~p~k~~---~~~~~~~~R~~m~~~a~~ 60 (193)
T TIGR00482 1 LFGGSFDPIHYGHLLLAEEALDHLDLDKVIFVPTANPPHKKT---YEAASSHHRLAMLKLAIE 60 (193)
T ss_pred CccccCCccCHHHHHHHHHHHHHcCCCEEEEEeCCCCCCCCC---CCCCCHHHHHHHHHHHHh
Confidence 5899999999999999999999874 8999999988876532 335799999999998875
No 30
>cd02165 NMNAT Nicotinamide/nicotinate mononucleotide adenylyltransferase. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis.
Probab=99.60 E-value=3.7e-15 Score=103.21 Aligned_cols=60 Identities=23% Similarity=0.346 Sum_probs=51.6
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhc-CeEEEEEcCCCcccccCCCCCCCCHHHHHHHHHHHHh
Q 034677 23 AVVLGGTFDRLHDGHRLFLKASAELAR-DRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIK 86 (87)
Q Consensus 23 ~v~~gGtFDplH~GHl~ll~~a~~~~~-d~vivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~~l~ 86 (87)
++++||||||+|.||+.+++.|.+.++ |+|++.++.++.. |+ ....|+++|++|++.+++
T Consensus 1 i~i~gGsFdP~H~GH~~~~~~a~~~~~~d~v~~~~~~~~~~--k~--~~~~~~~~R~~m~~~~~~ 61 (192)
T cd02165 1 IALFGGSFDPPHLGHLAIAEEALEELGLDRVLLLPSANPPH--KP--PKPASFEHRLEMLKLAIE 61 (192)
T ss_pred CeEEeeCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCCCCCC--CC--CCCCCHHHHHHHHHHHHc
Confidence 579999999999999999999999984 7999999877653 22 467899999999999875
No 31
>cd02170 cytidylyltransferase cytidylyltransferase. The cytidylyltransferase family includes cholinephosphate cytidylyltransferase (CCT), glycerol-3-phosphate cytidylyltransferase, RafE and phosphoethanolamine cytidylyltransferase (ECT). All enzymes catalyze the transfer of a cytidylyl group from CTP to various substrates.
Probab=99.59 E-value=3e-15 Score=98.55 Aligned_cols=60 Identities=37% Similarity=0.560 Sum_probs=53.1
Q ss_pred ccEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCccc-ccCCCCCCCCHHHHHHHHHH
Q 034677 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLT-NKQFAELIQPVDERMRNVEA 83 (87)
Q Consensus 21 ~~~v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~~~-~k~~~~~i~~~~~R~~~v~~ 83 (87)
|++++++|+||++|.||+.++++|.+++ +.++|+++.++.+. +|. .+++|.++|.+++++
T Consensus 1 ~~~v~~~G~FD~~H~GH~~ll~~a~~~~-~~l~v~v~~~~~~~~~~~--~~~~~~~eR~~~l~~ 61 (136)
T cd02170 1 MKRVYAAGTFDIIHPGHIRFLEEAKKLG-DYLIVGVARDETVAKIKR--RPILPEEQRAEVVEA 61 (136)
T ss_pred CeEEEEcCccCCCCHHHHHHHHHHHHhC-CEEEEEECCcHHHHhcCC--CCCCCHHHHHHHHHc
Confidence 5789999999999999999999999998 79999999997553 332 589999999999997
No 32
>cd02039 cytidylyltransferase_like Cytidylyltransferase-like domain. Cytidylyltransferase-like domain. Many of these proteins are known to use CTP or ATP and release pyrophosphate. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown.
Probab=99.58 E-value=6.3e-15 Score=95.48 Aligned_cols=61 Identities=20% Similarity=0.344 Sum_probs=52.3
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCcccccCCCCCCCCHHHHHHHHHHHH
Q 034677 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYI 85 (87)
Q Consensus 23 ~v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~~l 85 (87)
+++++|+|||+|.||+.++++|++.+.+.++|++.++++.+.+ ..+..++++|++|++.+.
T Consensus 1 ~~~~~G~Fdp~H~GH~~ll~~a~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~R~~~l~~~~ 61 (143)
T cd02039 1 VGIIIGRFEPFHLGHLKLIKEALEEALDEVIIIIVSNPPKKKR--NKDPFSLHERVEMLKEIL 61 (143)
T ss_pred CeEEeeccCCcCHHHHHHHHHHHHHcCCceEEEEcCCChhhcc--cccCCCHHHHHHHHHHhc
Confidence 4799999999999999999999999856899999888764321 257899999999999876
No 33
>cd02171 G3P_Cytidylyltransferase glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidylyltransferase,(CDP-glycerol pyrophosphorylase). Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most, but not all, species encoding proteins in this family are Gram-positive bacteria. A closely related protein assigned a different function experimentally is a human ethanolamine-phosphate cytidylyltransferase.
Probab=99.58 E-value=4.6e-15 Score=96.90 Aligned_cols=62 Identities=29% Similarity=0.459 Sum_probs=53.3
Q ss_pred ccEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCcccccCCCCCCCCHHHHHHHHHHH
Q 034677 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAY 84 (87)
Q Consensus 21 ~~~v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~~ 84 (87)
|++++++|+||++|.||..++++|.+++ ++++++++.|+..+.+. ..++.|+++|.++++++
T Consensus 1 ~~~v~~~G~FDgvH~GH~~ll~~a~~~~-~~l~v~v~~d~~~~~~~-~~~~~~~~~R~~~l~~~ 62 (129)
T cd02171 1 MKVVITYGTFDLLHIGHLNLLERAKALG-DKLIVAVSTDEFNAGKG-KKAVIPYEQRAEILESI 62 (129)
T ss_pred CcEEEEeeeeccCCHHHHHHHHHHHHhC-CEEEEEEeccHhHHhcC-CCCCCCHHHHHHHHHcC
Confidence 5789999999999999999999999998 68999999887544332 36899999999999764
No 34
>PRK01153 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=99.56 E-value=1.7e-14 Score=99.78 Aligned_cols=59 Identities=20% Similarity=0.294 Sum_probs=48.7
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCC-CcccccCCCCCCCCHHHHHHHHHHHHh
Q 034677 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDG-PMLTNKQFAELIQPVDERMRNVEAYIK 86 (87)
Q Consensus 23 ~v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d-~~~~~k~~~~~i~~~~~R~~~v~~~l~ 86 (87)
+++|||+|||+|.||+.++++|++.+ |+|+|++.+. +..+. ..-.+.++|++|++..++
T Consensus 2 ~gl~~G~F~P~H~GHl~~i~~a~~~~-d~v~v~i~s~~~~~~~----~~p~~~~~R~~mi~~a~~ 61 (174)
T PRK01153 2 RALFIGRFQPFHKGHLEVIKWILEEV-DELIIGIGSAQESHTL----KNPFTAGERILMIRKALE 61 (174)
T ss_pred EEEEeeccCCCCHHHHHHHHHHHHhC-CEEEEEecCCCCCCCC----CCCCCHHHHHHHHHHHHh
Confidence 68999999999999999999999987 8999988654 33222 234688999999998875
No 35
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=99.56 E-value=1.7e-14 Score=108.12 Aligned_cols=64 Identities=19% Similarity=0.369 Sum_probs=54.6
Q ss_pred CcccEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCcccccCCCCCCCCHHHHHHHHHHHHh
Q 034677 19 NSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIK 86 (87)
Q Consensus 19 ~~~~~v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~~l~ 86 (87)
..++++++||+|||+|.||+.++++|++.+ |+|+|+|++......++ . ..++++|++|++..++
T Consensus 4 ~~~~~~~~~G~F~P~H~GHl~~i~~a~~~~-d~l~v~i~s~~~~~~~~--~-~~~~~~R~~mi~~~~~ 67 (340)
T PRK05379 4 RRYDYLVFIGRFQPFHNGHLAVIREALSRA-KKVIVLIGSADLARSIK--N-PFSFEERAQMIRAALA 67 (340)
T ss_pred ccceEEEEeeccCCCCHHHHHHHHHHHHHC-CEEEEEEccCCCCCcCC--C-CCCHHHHHHHHHHHhh
Confidence 468899999999999999999999999999 89999998764433332 3 4899999999999875
No 36
>PLN02406 ethanolamine-phosphate cytidylyltransferase
Probab=99.55 E-value=1.1e-14 Score=112.37 Aligned_cols=67 Identities=27% Similarity=0.419 Sum_probs=59.8
Q ss_pred CCCCcccEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCccc-ccCCCCCCCCHHHHHHHHHH
Q 034677 16 SPDNSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLT-NKQFAELIQPVDERMRNVEA 83 (87)
Q Consensus 16 ~~~~~~~~v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~~~-~k~~~~~i~~~~~R~~~v~~ 83 (87)
.|....++|+++|+||.+|.||+.+|++|.+++ +.|+||+++|+.+. +|+...|+++.++|..+|.+
T Consensus 246 ~p~~~~~iVyv~G~FDlfH~GHi~~L~~Ak~lG-d~LIVGV~sD~~v~~~KG~~~Pi~~~~ER~~~v~a 313 (418)
T PLN02406 246 GPGPDARIVYIDGAFDLFHAGHVEILRLARALG-DFLLVGIHTDQTVSAHRGAHRPIMNLHERSLSVLA 313 (418)
T ss_pred CCCCCCeEEEECCeeccCCHHHHHHHHHHHHhC-CEEEEEEeccHHHHHhcCCCCCCCCHHHHHHHHhc
Confidence 466788999999999999999999999999998 89999999998774 45445899999999999875
No 37
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=99.54 E-value=2.3e-14 Score=90.90 Aligned_cols=58 Identities=24% Similarity=0.297 Sum_probs=50.4
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCcccccCCCCCCCCHHHHHHHHHHH
Q 034677 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAY 84 (87)
Q Consensus 23 ~v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~~ 84 (87)
.+++||+|||+|.||+.++++|.+++ +.++++++.++..+.+ ..+.++++|.++++..
T Consensus 1 ~~~~~G~Fdp~H~GH~~l~~~a~~~~-d~~i~~i~~~~~~~~~---~~~~~~~~R~~~l~~~ 58 (105)
T cd02156 1 KARFPGEPGYLHIGHAKLICRAKGIA-DQCVVRIDDNPPVKVW---QDPHELEERKESIEED 58 (105)
T ss_pred CEEeCCCCCCCCHHHHHHHHHHHHhC-CcEEEEEcCCCccccc---CChHHHHHHHHHHHHH
Confidence 37899999999999999999999999 7999999988775432 3589999999999864
No 38
>PLN02413 choline-phosphate cytidylyltransferase
Probab=99.53 E-value=3.1e-14 Score=105.34 Aligned_cols=67 Identities=25% Similarity=0.407 Sum_probs=57.8
Q ss_pred CCCCCcccEEEEcccCCCCCHHHHHHHHHHHHHh-cCeEEEEEcCCCccc-ccCCCCCCCCHHHHHHHHHH
Q 034677 15 ISPDNSYGAVVLGGTFDRLHDGHRLFLKASAELA-RDRIVVGVCDGPMLT-NKQFAELIQPVDERMRNVEA 83 (87)
Q Consensus 15 ~~~~~~~~~v~~gGtFDplH~GHl~ll~~a~~~~-~d~vivgv~~d~~~~-~k~~~~~i~~~~~R~~~v~~ 83 (87)
.++..+-.+|++.|+||.+|.||+.+|++|.+++ ++.|||||++|+.+. .|+ .|+++.++|..+|+.
T Consensus 21 ~~~~~r~~rVyvdG~FDLfH~GHir~L~qAK~lg~~d~LIVGV~sDe~v~~~KG--rPIm~~~ER~e~V~a 89 (294)
T PLN02413 21 SSPSDRPVRVYADGIYDLFHFGHARSLEQAKKLFPNTYLLVGCCNDELTHKYKG--KTVMTEDERYESLRH 89 (294)
T ss_pred CCCCCCceEEEEeCchhhCCHHHHHHHHHHHHhCCCCEEEEEecccHHHHhcCC--CCCCCHHHHHHHHHh
Confidence 3445667899999999999999999999999997 479999999998774 443 699999999999875
No 39
>PLN02945 nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase
Probab=99.50 E-value=1e-13 Score=99.48 Aligned_cols=70 Identities=10% Similarity=0.123 Sum_probs=51.7
Q ss_pred CCCCCCCcccEEEEcccCCCCCHHHHHHHHHHHHHhc-CeE-----EEEEcCCCcccccCCCCCCCCHHHHHHHHHHHHh
Q 034677 13 SNISPDNSYGAVVLGGTFDRLHDGHRLFLKASAELAR-DRI-----VVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIK 86 (87)
Q Consensus 13 ~~~~~~~~~~~v~~gGtFDplH~GHl~ll~~a~~~~~-d~v-----ivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~~l~ 86 (87)
...++++...+.++||||||+|.||+.+++.|.+... +.+ ++.++.++.. | ....+.++|++|++..++
T Consensus 14 ~~~~~~~~~~v~i~GGSFdP~H~gHl~ia~~a~~~l~~d~~~~v~~~~~P~~~~~~--k---~~~~~~~~Rl~Ml~lai~ 88 (236)
T PLN02945 14 ANSTGPRTRVVLVATGSFNPPTYMHLRMFELARDALMSEGYHVLGGYMSPVNDAYK--K---KGLASAEHRIQMCQLACE 88 (236)
T ss_pred hcCccCCceEEEEEcCCCCCCcHHHHHHHHHHHHHHhhcCcEEEEEEECCCCcccc--c---CCCCCHHHHHHHHHHHhc
Confidence 3567777777889999999999999999999988863 443 2333333332 2 346799999999998775
Q ss_pred C
Q 034677 87 G 87 (87)
Q Consensus 87 ~ 87 (87)
+
T Consensus 89 ~ 89 (236)
T PLN02945 89 D 89 (236)
T ss_pred C
Confidence 3
No 40
>PTZ00308 ethanolamine-phosphate cytidylyltransferase; Provisional
Probab=99.43 E-value=3.1e-13 Score=102.34 Aligned_cols=63 Identities=29% Similarity=0.370 Sum_probs=55.4
Q ss_pred CcccEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCccc-ccCCCCCCCCHHHHHHHHHHH
Q 034677 19 NSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLT-NKQFAELIQPVDERMRNVEAY 84 (87)
Q Consensus 19 ~~~~~v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~~~-~k~~~~~i~~~~~R~~~v~~~ 84 (87)
.+..+|++.|+||.+|.||..++++|.+++ +.|+||+++|+.+. +|. .|+++.++|.++|+.+
T Consensus 9 ~~~~~v~~~G~FD~vH~GH~~~L~qAk~~g-~~Livgv~~d~~i~~~K~--~pi~~~eeR~~~l~~~ 72 (353)
T PTZ00308 9 PGTIRVWVDGCFDMLHFGHANALRQARALG-DELFVGCHSDEEIMRNKG--PPVMHQEERYEALRAC 72 (353)
T ss_pred CCcEEEEEEeecccCCHHHHHHHHHHHHhC-CEEEEEeCCHHHHhhcCC--CCCCCHHHHHHHHHhc
Confidence 345799999999999999999999999998 78999999998774 443 5799999999999864
No 41
>TIGR01518 g3p_cytidyltrns glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most but not all species encoding proteins in this family are Gram-positive bacteria.
Probab=99.43 E-value=2.2e-13 Score=88.92 Aligned_cols=59 Identities=29% Similarity=0.387 Sum_probs=50.6
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCcccccCCCCCCCCHHHHHHHHHHH
Q 034677 24 VVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAY 84 (87)
Q Consensus 24 v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~~ 84 (87)
|++.|+||.+|.||..++++|.+++ ++++|++++|+....++ ..++.|.++|.+++++.
T Consensus 1 v~~~G~FDg~H~GH~~~l~~a~~~~-~~~iv~v~~d~~~~~~~-~~~i~~~eeR~~~l~~~ 59 (125)
T TIGR01518 1 VLTYGTFDLLHWGHINLLERAKQLG-DYLIVALSTDEFNLQKQ-KKAYHSYEHRKLILETI 59 (125)
T ss_pred CEEcceeCCCCHHHHHHHHHHHHcC-CEEEEEEechHHHhhcC-CCCCCCHHHHHHHHHcC
Confidence 4678999999999999999999998 78999999998665332 47899999999998753
No 42
>KOG2803 consensus Choline phosphate cytidylyltransferase/Predicted CDP-ethanolamine synthase [Lipid transport and metabolism]
Probab=99.38 E-value=6.4e-13 Score=99.53 Aligned_cols=62 Identities=32% Similarity=0.419 Sum_probs=55.9
Q ss_pred CcccEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCcc-cccCCCCCCCCHHHHHHHHHH
Q 034677 19 NSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPML-TNKQFAELIQPVDERMRNVEA 83 (87)
Q Consensus 19 ~~~~~v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~~-~~k~~~~~i~~~~~R~~~v~~ 83 (87)
++-.+|++.|+||.+|+||.+.|.+|.++| ++|||||++|+.+ .||+ .|+++.+||++|++.
T Consensus 6 ~~~~rVw~DGCfDm~HyGHanaLrQAkalG-dkLivGVHsDeeI~~nKG--pPV~t~eERy~~v~~ 68 (358)
T KOG2803|consen 6 NRPVRVWADGCFDMVHYGHANALRQAKALG-DKLIVGVHSDEEITLNKG--PPVFTDEERYEMVKA 68 (358)
T ss_pred CCceeEEeccchhhhhhhhhHHHHHHHHhC-CeEEEEecchHHHHhcCC--CCcccHHHHHHHHhh
Confidence 445579999999999999999999999999 8999999999877 4665 899999999999975
No 43
>cd02172 RfaE_N N-terminal domain of RfaE. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in other organisms. Domain I is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose .
Probab=99.38 E-value=1.8e-12 Score=87.06 Aligned_cols=61 Identities=31% Similarity=0.391 Sum_probs=52.5
Q ss_pred ccEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCcccccCCCCCCCCHHHHHHHHHH
Q 034677 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEA 83 (87)
Q Consensus 21 ~~~v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~ 83 (87)
-+++++-|+||.+|.||..++++|.+++ +.++|+++.++.+... ...++.|.++|.+++++
T Consensus 4 ~~~vv~~G~FDgvH~GH~~ll~~a~~~~-~~~vv~~~~d~~~~~~-~~~~i~~~~eR~~~l~~ 64 (144)
T cd02172 4 KTVVLCHGVFDLLHPGHVRHLQAARSLG-DILVVSLTSDRYVNKG-PGRPIFPEDLRAEVLAA 64 (144)
T ss_pred CEEEEEecccCCCCHHHHHHHHHHHHhC-CeEEEEEeChHHhccC-CCCCCCCHHHHHHHHHc
Confidence 3578999999999999999999999998 6899999998765422 24789999999999875
No 44
>TIGR02199 rfaE_dom_II rfaE bifunctional protein, domain II. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. Domain I (TIGR02198) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=99.38 E-value=1.8e-12 Score=86.99 Aligned_cols=63 Identities=33% Similarity=0.490 Sum_probs=53.3
Q ss_pred ccEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCccc-ccCCCCCCCCHHHHHHHHHHH
Q 034677 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLT-NKQFAELIQPVDERMRNVEAY 84 (87)
Q Consensus 21 ~~~v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~~~-~k~~~~~i~~~~~R~~~v~~~ 84 (87)
.+++++.|+||.+|.||..++++|.+.+ +.++|+++.|+... .|+...|+.+.++|.++++++
T Consensus 11 ~~~v~~~G~FDgvH~GH~~ll~~a~~~~-~~~~v~v~~d~~~~~~k~~~~~l~~~eeR~~~l~~~ 74 (144)
T TIGR02199 11 KKIVFTNGCFDILHAGHVSYLQQARALG-DRLVVGVNSDASVKRLKGETRPINPEEDRAEVLAAL 74 (144)
T ss_pred CCEEEEeCcccccCHHHHHHHHHHHHhC-CccEEEEECCcCHHHhCCCCCCcCCHHHHHHHHHhc
Confidence 5789999999999999999999999998 67999999997543 232225799999999999874
No 45
>cd09286 NMNAT_Eukarya Nicotinamide/nicotinate mononucleotide adenylyltransferase, Eukaryotic. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis. This subfamily consists strictly of eukaryotic members and includes secondary structural elements not found in all NMNATs.
Probab=99.37 E-value=2.2e-12 Score=92.21 Aligned_cols=59 Identities=8% Similarity=0.195 Sum_probs=44.9
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhc-Ce-E-----EEEEcCCCcccccCCCCCCCCHHHHHHHHHHHHh
Q 034677 23 AVVLGGTFDRLHDGHRLFLKASAELAR-DR-I-----VVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIK 86 (87)
Q Consensus 23 ~v~~gGtFDplH~GHl~ll~~a~~~~~-d~-v-----ivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~~l~ 86 (87)
+.+|||||||+|.||+.+++.|.+..+ +. + ++.+..+++. | ....+.++|++|++..++
T Consensus 2 ~~~~gGSFdPiH~gHl~ia~~a~~~l~~~~~~~~v~~~~~P~~~~~~--k---~~~~~~~~Rl~Ml~lai~ 67 (225)
T cd09286 2 VLLACGSFNPITNMHLRMFELARDHLHETGRYEVVGGIISPVNDAYG--K---KGLASAKHRVAMCRLAVQ 67 (225)
T ss_pred EEEeCcCcCCCcHHHHHHHHHHHHHHHhhcCceeEEEEEEeeccCCC--C---CCCCCHHHHHHHHHHHHc
Confidence 468999999999999999999998873 33 2 2234444432 2 456799999999998875
No 46
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=99.37 E-value=2.2e-12 Score=98.86 Aligned_cols=67 Identities=19% Similarity=0.256 Sum_probs=54.0
Q ss_pred CcccEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCccc----ccCCCCCCCCHHHHHHHHHHHHh
Q 034677 19 NSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLT----NKQFAELIQPVDERMRNVEAYIK 86 (87)
Q Consensus 19 ~~~~~v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~~~----~k~~~~~i~~~~~R~~~v~~~l~ 86 (87)
..+++++++|+|||+|.||+.++++|+.++ |.|+|+|.++++.+ ++.......+.++|.+|+++.++
T Consensus 50 ~~~~~~v~~G~FdP~H~GH~~lI~~A~~~~-d~l~v~v~~~~~~~~~~~~~~~~~~~~s~~~R~~~l~~~~~ 120 (399)
T PRK08099 50 QMKKIGVVFGKFYPLHTGHIYLIQRACSQV-DELHIIICYDDERDRKLFEDSAMSQQPTVSDRLRWLLQTFK 120 (399)
T ss_pred hcCcEEEEEEecCCCCHHHHHHHHHHHHHC-CeeEEEEEccCCcchhhcccccccCCCCHHHHHHHHHHHhC
Confidence 446799999999999999999999999998 79999998776322 00112467899999999998765
No 47
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=99.35 E-value=2.9e-12 Score=96.32 Aligned_cols=58 Identities=19% Similarity=0.210 Sum_probs=50.3
Q ss_pred ccEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCcccccCCCCCCCCHHHHHHHHHHHHhC
Q 034677 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKG 87 (87)
Q Consensus 21 ~~~v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~~l~~ 87 (87)
-+++++||+|||+|.||+.++++|+.++ |.++|++... + ....|+++|++|+++.+++
T Consensus 139 ~~i~~~~g~fdP~t~GH~~li~~A~~~~-d~~~v~v~~~-----~---~~~f~~~~R~~~v~~~~~~ 196 (332)
T TIGR00124 139 NKIGSIVMNANPFTNGHRYLIEQAARQC-DWLHLFVVKE-----D---ASLFSYDERFALVKQGIQD 196 (332)
T ss_pred CcEEEEEeCcCCCchHHHHHHHHHHHHC-CEEEEEEEeC-----C---CCCCCHHHHHHHHHHHhcC
Confidence 4789999999999999999999999999 7888888532 2 4589999999999987753
No 48
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.33 E-value=2e-12 Score=99.72 Aligned_cols=60 Identities=32% Similarity=0.486 Sum_probs=54.5
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCccc-ccCCCCCCCCHHHHHHHHHH
Q 034677 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLT-NKQFAELIQPVDERMRNVEA 83 (87)
Q Consensus 23 ~v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~~~-~k~~~~~i~~~~~R~~~v~~ 83 (87)
+|+++|+||.+|.||..+|.+|..+| |+++||+++|...+ -|+..+|+.|.++|...+..
T Consensus 334 vvfTNGcFDIlH~GHvsyL~~Ar~lg-d~Livg~NsDaSvkrLKG~~RPin~~~~Ra~vLa~ 394 (467)
T COG2870 334 VVFTNGCFDILHAGHVTYLAQARALG-DRLIVGVNSDASVKRLKGESRPINSEEDRAAVLAA 394 (467)
T ss_pred EEEecchhhhccccHHHHHHHHHhhC-CeEEEEeccchhhhhhcCCCCCCCcHHHHHHHHhh
Confidence 89999999999999999999999999 89999999999886 35567999999999987754
No 49
>PRK13793 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=99.33 E-value=6.7e-12 Score=88.73 Aligned_cols=63 Identities=14% Similarity=0.193 Sum_probs=53.3
Q ss_pred cccEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCcccccCCCCCCCCHHHHHHHHHHHHh
Q 034677 20 SYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIK 86 (87)
Q Consensus 20 ~~~~v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~~l~ 86 (87)
.|+.+++.|.|.|+|.||+.+++.|++.+ |+|||++.+....... +.| +++.+|..|+...|.
T Consensus 3 ~yd~~v~iGRFQPfH~GHl~~I~~al~~~-devII~IGSA~~s~t~--~NP-FTa~ER~~MI~~aL~ 65 (196)
T PRK13793 3 TFDYLVFIGRFQPFHLAHMQTIEIALQQS-RYVILALGSAQMERNI--KNP-FLAIEREQMILSNFS 65 (196)
T ss_pred ceeEEEEEecCCCCcHHHHHHHHHHHHhC-CEEEEEEccCCCCCCC--CCC-CCHHHHHHHHHHhcc
Confidence 47889999999999999999999999999 7999999886543222 234 788999999998874
No 50
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional
Probab=99.23 E-value=2.1e-11 Score=93.54 Aligned_cols=63 Identities=30% Similarity=0.489 Sum_probs=54.4
Q ss_pred cccEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCccc-ccCCCCCCCCHHHHHHHHHH
Q 034677 20 SYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLT-NKQFAELIQPVDERMRNVEA 83 (87)
Q Consensus 20 ~~~~v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~~~-~k~~~~~i~~~~~R~~~v~~ 83 (87)
..++|++.|+||.+|.||+.++++|.+++ ++++||+++|+.+. .|+...|++++++|.++++.
T Consensus 339 ~~~iv~~~G~fD~~H~GH~~~l~~a~~~~-~~l~v~v~~d~~~~~~k~~~~pi~~~~~R~~~~~~ 402 (473)
T PRK11316 339 GEKIVMTNGCFDILHAGHVSYLANARKLG-DRLIVAVNSDASVKRLKGEGRPVNPLEQRMAVLAA 402 (473)
T ss_pred CCeEEEEecccccCCHHHHHHHHHHHHhC-CeeEEEEeCchhHHHhCCCCCCCCCHHHHHHHHHh
Confidence 35899999999999999999999999998 78999999998663 34334689999999999864
No 51
>KOG2803 consensus Choline phosphate cytidylyltransferase/Predicted CDP-ethanolamine synthase [Lipid transport and metabolism]
Probab=99.16 E-value=7.8e-11 Score=88.46 Aligned_cols=67 Identities=28% Similarity=0.438 Sum_probs=57.7
Q ss_pred CCCCcccEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCcccccC-CCCCCCCHHHHHHHHHH
Q 034677 16 SPDNSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQ-FAELIQPVDERMRNVEA 83 (87)
Q Consensus 16 ~~~~~~~~v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~~~~k~-~~~~i~~~~~R~~~v~~ 83 (87)
.|...-++|++.|.||.+|.||+..|+.|..++ |.+|||+.+|+....++ ...|+++..||...|.+
T Consensus 193 ~p~p~~kvVYvdGaFDLFH~GHl~~Le~ak~lg-dyLIvGI~~D~~vneykgs~~PiMnl~ER~Lsvla 260 (358)
T KOG2803|consen 193 EPKPTDKVVYVDGAFDLFHAGHLDFLEKAKRLG-DYLIVGIHTDQTVNEYKGSNYPIMNLHERVLSVLA 260 (358)
T ss_pred CCCCCCcEEEEcCchhhhccchHHHHHHHHhcc-CceEEEeecCcchhhhccCCCccchHHHHHHHHhh
Confidence 445567899999999999999999999999999 79999999998775443 35799999999988765
No 52
>cd02064 FAD_synthetase_N FAD synthetase, N-terminal domain of the bifunctional enzyme. FAD synthetase_N. N-terminal domain of the bifunctional riboflavin biosynthesis protein riboflavin kinase/FAD synthetase. These enzymes have both ATP:riboflavin 5'-phosphotransferase and ATP:FMN-adenylyltransferase activities. The N-terminal domain is believed to play a role in the adenylylation reaction of FAD synthetases. The C-terminal domain is thought to have kinase activity. FAD synthetase is present among all kingdoms of life. However, the bifunctional enzyme is not found in mammals, which use separate enzymes for FMN and FAD formation.
Probab=99.06 E-value=4.5e-10 Score=77.42 Aligned_cols=61 Identities=23% Similarity=0.331 Sum_probs=44.0
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHHhc--CeEEEEEcCCCcc----cccCCCCCCCCHHHHHHHHHHH
Q 034677 24 VVLGGTFDRLHDGHRLFLKASAELAR--DRIVVGVCDGPML----TNKQFAELIQPVDERMRNVEAY 84 (87)
Q Consensus 24 v~~gGtFDplH~GHl~ll~~a~~~~~--d~vivgv~~d~~~----~~k~~~~~i~~~~~R~~~v~~~ 84 (87)
+++-|+||++|.||..++++|.++++ +...+.++-++.- ..+....++.|.++|+++++..
T Consensus 2 vv~iG~FDgvH~GH~~ll~~a~~~a~~~~~~~vvv~f~~~p~~~~~~~~~~~~l~~~e~R~~~l~~l 68 (180)
T cd02064 2 VVAIGNFDGVHLGHQALIKTLKKIARERGLPSAVLTFDPHPREVFLPDKAPPRLTTLEEKLELLESL 68 (180)
T ss_pred EEEEecCCccCHHHHHHHHHHHHHHHHcCCCeEEEEECCCHHHHhCCCCCCCcCCCHHHHHHHHHHc
Confidence 67889999999999999999999973 2344444444321 1122246799999999999863
No 53
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=99.06 E-value=6.3e-10 Score=82.66 Aligned_cols=59 Identities=15% Similarity=0.150 Sum_probs=47.0
Q ss_pred cccEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCcccccCCCCCCCCHHHHHHHHHHHHhC
Q 034677 20 SYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKG 87 (87)
Q Consensus 20 ~~~~v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~~l~~ 87 (87)
-.+++.+-|||||+|.||+.++++|++.+ +.+.|.+-.. + .+..|+++|++|++..+++
T Consensus 113 ~~~~~~~~~~FDPiH~GHl~ii~~a~~~~-d~~~V~i~~~-----~---~~~~~~e~R~~ml~~ai~~ 171 (297)
T cd02169 113 GKKIAAIVMNANPFTLGHRYLVEKAAAEN-DWVHLFVVSE-----D---KSLFSFADRFKLVKKGTKH 171 (297)
T ss_pred CCceEEEEecCCCCchHHHHHHHHHHhhC-CeEEEEEEcC-----C---CCCCCHHHHHHHHHHHhCC
Confidence 35788888999999999999999999998 4555544322 1 3578999999999998763
No 54
>COG1056 NadR Nicotinamide mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=99.02 E-value=9.4e-10 Score=76.51 Aligned_cols=63 Identities=17% Similarity=0.253 Sum_probs=52.7
Q ss_pred cccEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCcccccCCCCCCCCHHHHHHHHHHHHh
Q 034677 20 SYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIK 86 (87)
Q Consensus 20 ~~~~v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~~l~ 86 (87)
+++++++-|.|.|+|-||+.+++.|++.. |+|+|++.++...-.. ..| .+..+|..|+++.|.
T Consensus 2 ~~~rgv~~GRFqP~H~GHl~vi~~al~~v-DeliI~iGSa~~~~t~--~nP-fTagER~~mi~~~L~ 64 (172)
T COG1056 2 RMKRGVYFGRFQPLHTGHLYVIKRALSKV-DELIIVIGSAQESHTL--KNP-FTAGERIPMIRDRLR 64 (172)
T ss_pred CceEEEEEeccCCccHhHHHHHHHHHHhC-CEEEEEEccCcccccc--cCC-CCccchhHHHHHHHH
Confidence 57889999999999999999999999998 8999999998643111 133 677999999998886
No 55
>smart00764 Citrate_ly_lig Citrate lyase ligase C-terminal domain. Proteins of this family contain the C-terminal domain of citrate lyase ligase EC:6.2.1.22.
Probab=98.98 E-value=1.8e-09 Score=75.27 Aligned_cols=51 Identities=22% Similarity=0.223 Sum_probs=40.0
Q ss_pred ccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCcccccCCCCCCCCHHHHHHHHHHHHhC
Q 034677 28 GTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKG 87 (87)
Q Consensus 28 GtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~~l~~ 87 (87)
-+|||+|+||+.++++|++++ +.++|++... + .+..|.++|++|++..+++
T Consensus 6 ~~~DPiH~GHl~i~~~a~~~~-d~~~V~v~p~-----~---~~~~s~e~R~~Mi~~a~~~ 56 (182)
T smart00764 6 MNANPFTLGHRYLVEQAAAEC-DWVHLFVVSE-----D---ASLFSFDERFALVKKGTKD 56 (182)
T ss_pred ECCCCCCHHHHHHHHHHHHHC-CceEEEEEeC-----C---CCCCCHHHHHHHHHHHhcc
Confidence 489999999999999999999 4555444322 1 2467999999999998763
No 56
>PRK13671 hypothetical protein; Provisional
Probab=98.95 E-value=2.2e-09 Score=79.98 Aligned_cols=53 Identities=11% Similarity=0.190 Sum_probs=44.3
Q ss_pred ccCCCCCHHHHHHHHHHHHHh-cCeEEEEEcCCCcccccCCCCCCCCHHHHHHHHHH
Q 034677 28 GTFDRLHDGHRLFLKASAELA-RDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEA 83 (87)
Q Consensus 28 GtFDplH~GHl~ll~~a~~~~-~d~vivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~ 83 (87)
-+|||+|+||+.+++++++.. .|.++++++++++.+ + ...+.+..+|.+|++.
T Consensus 7 aeFNP~H~GHl~~~~~a~~~~~~d~vi~vpSg~~~qr--g-~pa~~~~~~R~~ma~~ 60 (298)
T PRK13671 7 AEYNPFHNGHIYQINYIKNKFPNEKIIVILSGKYTQR--G-EIAVASFEKRKKIALK 60 (298)
T ss_pred eeeCCccHHHHHHHHHHHHhcCCCEEEEEECcCCCCC--C-CCCCCCHHHHHHHHHH
Confidence 489999999999999999986 389999998887643 2 2456699999999876
No 57
>KOG2804 consensus Phosphorylcholine transferase/cholinephosphate cytidylyltransferase [Lipid transport and metabolism]
Probab=98.74 E-value=1.8e-08 Score=75.59 Aligned_cols=63 Identities=24% Similarity=0.370 Sum_probs=54.1
Q ss_pred CcccEEEEcccCCCCCHHHHHHHHHHHHHh-cCeEEEEEcCCCcc-cccCCCCCCCCHHHHHHHHHH
Q 034677 19 NSYGAVVLGGTFDRLHDGHRLFLKASAELA-RDRIVVGVCDGPML-TNKQFAELIQPVDERMRNVEA 83 (87)
Q Consensus 19 ~~~~~v~~gGtFDplH~GHl~ll~~a~~~~-~d~vivgv~~d~~~-~~k~~~~~i~~~~~R~~~v~~ 83 (87)
.+--+|+..|.||.+|.||..-|.+|..++ +-+||||+++|..- +.| ...+++.++|++.|+.
T Consensus 61 ~RPVRVYADGIyDLFH~GHarqL~QaK~~FPNvyLiVGvc~De~Thk~K--G~TVm~e~ERyE~lrH 125 (348)
T KOG2804|consen 61 DRPVRVYADGIYDLFHYGHARQLEQAKKLFPNVYLIVGVCSDELTHKFK--GRTVMNENERYEALRH 125 (348)
T ss_pred CCceEEEccchHHHhhhhHHHHHHHHHHhCCCeEEEEeecCchhhhhcc--CceecChHHHHHHhhh
Confidence 444578999999999999999999999998 58999999999753 344 4789999999998864
No 58
>PRK07143 hypothetical protein; Provisional
Probab=98.47 E-value=6.5e-07 Score=66.20 Aligned_cols=64 Identities=20% Similarity=0.311 Sum_probs=46.3
Q ss_pred CcccEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCcccccCCCCCCCCHHHHHHHHHH
Q 034677 19 NSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEA 83 (87)
Q Consensus 19 ~~~~~v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~ 83 (87)
.....+++=|+||-+|.||..|+++|.+.+ +..+|...+++..-.+.....+.|.++|.+.++.
T Consensus 13 ~~~~~vvaiG~FDGvH~GHq~Ll~~a~~~~-~~~vV~tF~~P~~~~~~~~~~l~~~~er~~~l~~ 76 (279)
T PRK07143 13 KFEKPTFVLGGFESFHLGHLELFKKAKESN-DEIVIVIFKNPENLPKNTNKKFSDLNSRLQTLAN 76 (279)
T ss_pred CCCCeEEEEccCCcCCHHHHHHHHHHHHCC-CcEEEEEeCChHHhcccCcccCCCHHHHHHHHHH
Confidence 344567888999999999999999999876 5555555544321111123568999999999875
No 59
>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed
Probab=98.44 E-value=6.4e-07 Score=66.84 Aligned_cols=62 Identities=23% Similarity=0.349 Sum_probs=44.8
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhc--CeEEEEEcCCCcc----cccCCCCCCCCHHHHHHHHHHH
Q 034677 23 AVVLGGTFDRLHDGHRLFLKASAELAR--DRIVVGVCDGPML----TNKQFAELIQPVDERMRNVEAY 84 (87)
Q Consensus 23 ~v~~gGtFDplH~GHl~ll~~a~~~~~--d~vivgv~~d~~~----~~k~~~~~i~~~~~R~~~v~~~ 84 (87)
.+++-|+||-+|.||..++++|.+.++ ..-.+.++-++.- ..+....++.+.++|...++..
T Consensus 15 ~vv~iG~FDGvH~GHq~Ll~~a~~~a~~~~~~~~vitFd~~p~~~~~~~~~~~~l~t~eeR~~~l~~~ 82 (305)
T PRK05627 15 CVLTIGNFDGVHRGHQALLARAREIARERGLPSVVMTFEPHPREVFAPDKAPARLTPLRDKAELLAEL 82 (305)
T ss_pred EEEEEeeCCcCCHHHHHHHHHHHHHHHhcCCCEEEEEecCCHHHHcCCCCCCcCCCCHHHHHHHHHHc
Confidence 789999999999999999999999973 1122344444321 1122246799999999998763
No 60
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=98.19 E-value=6.4e-06 Score=56.12 Aligned_cols=64 Identities=27% Similarity=0.428 Sum_probs=39.1
Q ss_pred ccEEEEcccCCCCCHHHHHHHHHHHHHhc--CeEEEEEcCC--C--cccccCCCCCCCCHHHHHHHHHHH
Q 034677 21 YGAVVLGGTFDRLHDGHRLFLKASAELAR--DRIVVGVCDG--P--MLTNKQFAELIQPVDERMRNVEAY 84 (87)
Q Consensus 21 ~~~v~~gGtFDplH~GHl~ll~~a~~~~~--d~vivgv~~d--~--~~~~k~~~~~i~~~~~R~~~v~~~ 84 (87)
.+.+++=|+||-+|.||..|+++|.+.+. +...+.++-+ | .+........+.|.++|.+.++.+
T Consensus 5 ~~~~v~iG~FDGvH~GHq~Li~~~~~~a~~~~~~~~v~tF~~~P~~~~~~~~~~~~l~s~~ek~~~l~~~ 74 (157)
T PF06574_consen 5 KKSVVAIGNFDGVHLGHQKLIKKAVEIAKEKGLKSVVLTFDPHPKEVLNPDKPPKLLTSLEEKLELLESL 74 (157)
T ss_dssp S-EEEEES--TT--HHHHHHHHHHHHHHHHCT-EEEEEEESS-CHHHHSCTCCGGBSS-HHHHHHHHHHT
T ss_pred CCcEEEEeCCCCccHHHHHHHHHHhhhhhhcccceEEEEcccCHHHHhcCCCcccCCCCHHHHHHHHHHc
Confidence 45678889999999999999999999972 3333333333 2 111112235699999999999864
No 61
>TIGR00339 sopT ATP sulphurylase. Members of this family also include the dissimilatory sulfate adenylyltransferase (sat) of the sulfate reducer Archaeoglobus fulgidus.
Probab=98.01 E-value=3.7e-05 Score=59.14 Aligned_cols=59 Identities=25% Similarity=0.210 Sum_probs=48.4
Q ss_pred cEEEEcccCCCCCHHHHHHHHHHHHHh-cCeEEEEEcCCCcccccCCCCCCCCHHHHHHHHHHHHh
Q 034677 22 GAVVLGGTFDRLHDGHRLFLKASAELA-RDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIK 86 (87)
Q Consensus 22 ~~v~~gGtFDplH~GHl~ll~~a~~~~-~d~vivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~~l~ 86 (87)
+.|+--=||||+|.||..+++.|++.. .|.|++.+...+. | ....|.+.|+++++.+++
T Consensus 184 ~~Vvafqt~nPiHr~H~~l~~~a~e~l~~d~lll~P~~g~~---k---~~~~~~~~R~~~~~~~~~ 243 (383)
T TIGR00339 184 DTVVAFQTRNPMHRAHEELTKRAARSLPNAGVLVHPLVGLT---K---PGDIPAEVRMRAYEVLKE 243 (383)
T ss_pred CeEEEeccCCCCchHHHHHHHHHHHHcCCCeEEEEeCCCCC---C---CCCCCHHHHHHHHHHHHh
Confidence 566666899999999999999999983 2789888877732 3 367999999999998875
No 62
>PF08218 Citrate_ly_lig: Citrate lyase ligase C-terminal domain; InterPro: IPR013166 [Citrate (pro-3S)-lyase] ligase (6.2.1.22 from EC), also known as citrate lyase ligase, is responsible for acetylation of the prosthetic group (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase. It converts the inactive thiol form of the enzyme to the active form. In Clostridium sphenoides, citrate lyase ligase actively degrades citrate. In Clostridium sporosphaeroides and Lactococcus lactis, however, the enzyme is under stringent regulatory control. The enzyme's activity in anaerobic bacteria is modulated by phosphorylation and dephosphorylation []. The proteins in this entry represent the C-terminal domain of citrate lyase ligase.; GO: 0008771 [citrate (pro-3S)-lyase] ligase activity
Probab=97.95 E-value=2.7e-05 Score=54.70 Aligned_cols=49 Identities=20% Similarity=0.234 Sum_probs=39.1
Q ss_pred ccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCcccccCCCCCCCCHHHHHHHHHHHH
Q 034677 28 GTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYI 85 (87)
Q Consensus 28 GtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~~l 85 (87)
-.=||++.||..|+++|++.+ |.|.|=+.+.+ .-.+|+++|++||++=+
T Consensus 6 MNaNPFT~GH~yLiE~Aa~~~-d~l~vFVV~eD--------~S~Fpf~~R~~LVk~G~ 54 (182)
T PF08218_consen 6 MNANPFTLGHRYLIEQAAKEC-DWLHVFVVSED--------RSLFPFADRYELVKEGT 54 (182)
T ss_pred EcCCCCccHHHHHHHHHHHhC-CEEEEEEEccc--------cCcCCHHHHHHHHHHHh
Confidence 356999999999999999999 66666554432 34799999999998744
No 63
>TIGR00083 ribF riboflavin kinase/FMN adenylyltransferase. multifunctional enzyme: riboflavin kinase (EC 2.7.1.26) (flavokinase) / FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase).
Probab=97.91 E-value=3.4e-05 Score=57.26 Aligned_cols=59 Identities=24% Similarity=0.361 Sum_probs=39.5
Q ss_pred EEcccCCCCCHHHHHHHHHHHHHhc----CeEEEEEcCCC--cccccCCCCCCCCHHHHHHHHHHH
Q 034677 25 VLGGTFDRLHDGHRLFLKASAELAR----DRIVVGVCDGP--MLTNKQFAELIQPVDERMRNVEAY 84 (87)
Q Consensus 25 ~~gGtFDplH~GHl~ll~~a~~~~~----d~vivgv~~d~--~~~~k~~~~~i~~~~~R~~~v~~~ 84 (87)
++-|+||.+|.||..|++++.+.+. ..+++.....| .+... ....+.+.++|.++++.+
T Consensus 2 vaiG~FDGvH~GHq~Li~~~~~~a~~~~~~~~V~tF~phP~~~~~~~-~~~~l~~~~~k~~~l~~~ 66 (288)
T TIGR00083 2 LAIGYFDGLHLGHQALLQELKQIAEEKGLPPAVLLFEPHPSEQFNWL-TAPALTPLEDKARQLQIK 66 (288)
T ss_pred EEEEeCCccCHHHHHHHHHHHHHHHHhCCCEEEEEeCCChHHHhCcc-CCCCCCCHHHHHHHHHHc
Confidence 5669999999999999999998752 23333333322 11111 112389999999998753
No 64
>PF05636 HIGH_NTase1: HIGH Nucleotidyl Transferase; InterPro: IPR008513 This family consists of several bacterial proteins of unknown function.; PDB: 3GMI_A.
Probab=97.67 E-value=0.0001 Score=56.82 Aligned_cols=53 Identities=13% Similarity=0.270 Sum_probs=31.2
Q ss_pred ccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCcccccCCCCCCCCHHHHHHHHH
Q 034677 28 GTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVE 82 (87)
Q Consensus 28 GtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~~~~k~~~~~i~~~~~R~~~v~ 82 (87)
--|||+|+||+..++++++..+..++|+|-|..+.. +..+.+.+--.|.+|-.
T Consensus 8 aEYNPFHnGH~y~i~~~k~~~~ad~ii~vMSGnFvQ--RGEPAi~dKw~RA~~AL 60 (388)
T PF05636_consen 8 AEYNPFHNGHLYQIEQAKKITGADVIIAVMSGNFVQ--RGEPAIIDKWTRAEMAL 60 (388)
T ss_dssp ---TT--HHHHHHHHHHH---TSSEEEEEE--TTSB--TSSB-SS-HHHHHHHHH
T ss_pred EeECCccHHHHHHHHHHhccCCCCEEEEEECCCccc--CCCeeeCCHHHHHHHHH
Confidence 369999999999999999887645566666666653 33466889899988753
No 65
>PRK13670 hypothetical protein; Provisional
Probab=97.60 E-value=0.00015 Score=55.91 Aligned_cols=54 Identities=17% Similarity=0.270 Sum_probs=38.8
Q ss_pred ccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCcccccCCCCCCCCHHHHHHHHHH
Q 034677 28 GTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEA 83 (87)
Q Consensus 28 GtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~ 83 (87)
--|||+|.||..+++++.+.....++++|-+..++.. .. ..+.+..+|.+++..
T Consensus 8 aEfdg~H~GH~~~i~~a~~~a~~~~~~~Vmp~~f~qr-g~-p~i~~~~~R~~~a~~ 61 (388)
T PRK13670 8 VEYNPFHNGHLYHLNQAKKLTNADVTIAVMSGNFVQR-GE-PAIVDKWTRAKMALE 61 (388)
T ss_pred eeeCCcCHHHHHHHHHHHHHHhCCCcEEEecHHHhCC-CC-CCCCCHHHHHHHHHH
Confidence 4699999999999999999874233333335444432 22 449999999999875
No 66
>COG0196 RibF FAD synthase [Coenzyme metabolism]
Probab=97.44 E-value=0.00031 Score=52.78 Aligned_cols=64 Identities=30% Similarity=0.421 Sum_probs=42.3
Q ss_pred ccEEEEcccCCCCCHHHHHHHHHHHHHhc-CeE-EEEEcCCC-ccc-ccC--CCCCCCCHHHHHHHHHHH
Q 034677 21 YGAVVLGGTFDRLHDGHRLFLKASAELAR-DRI-VVGVCDGP-MLT-NKQ--FAELIQPVDERMRNVEAY 84 (87)
Q Consensus 21 ~~~v~~gGtFDplH~GHl~ll~~a~~~~~-d~v-ivgv~~d~-~~~-~k~--~~~~i~~~~~R~~~v~~~ 84 (87)
...+++=|.||-+|.||..++++|.+.+. +.+ .+.++-++ +.+ .+. ....+.|.++|.+.++.+
T Consensus 15 ~~~~l~IG~FDGvHlGHq~ll~~a~~~a~~~~~~~~VitF~p~P~~~~~~~~~~~~Lt~~~~k~~~l~~~ 84 (304)
T COG0196 15 RGCVLTIGNFDGVHLGHQKLLAQALEAAEKRGLPVVVITFEPHPRELLKPDKPPTRLTPLREKIRLLAGY 84 (304)
T ss_pred CCcEEEEEcCCccchhHHHHHHHHHHHHHHhCCceEEEEecCCCHHHcCCCCCccccCCHHHHHHHHHhc
Confidence 45677789999999999999999997762 122 22333332 211 111 123489999999988764
No 67
>COG1323 Predicted nucleotidyltransferase [General function prediction only]
Probab=97.36 E-value=0.0003 Score=53.92 Aligned_cols=53 Identities=17% Similarity=0.262 Sum_probs=40.2
Q ss_pred ccCCCCCHHHHHHHHHHHHHhc-CeEEEEEcCCCcccccCCCCCCCCHHHHHHHHHH
Q 034677 28 GTFDRLHDGHRLFLKASAELAR-DRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEA 83 (87)
Q Consensus 28 GtFDplH~GHl~ll~~a~~~~~-d~vivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~ 83 (87)
--|||+|+||..++++|.+++. |.+++++.+| +.. +....+.+..+|.+|...
T Consensus 8 ~eyNPfHnGH~y~i~~Ar~~~~~d~~i~~msgd-f~q--Rgepai~~k~~r~~~aL~ 61 (358)
T COG1323 8 AEYNPFHNGHQYHINKAREEFKGDEIIAVMSGD-FTQ--RGEPAIGHKWERKKMALE 61 (358)
T ss_pred eecCcccccHHHHHHHHHHhccCCceEEeeecc-hhh--cCCCccccHHHHHhhhhh
Confidence 4699999999999999999764 5666666555 432 234678999999998754
No 68
>TIGR00018 panC pantoate--beta-alanine ligase. This family is pantoate--beta-alanine ligase, the last enzyme of pantothenate biosynthesis.
Probab=96.94 E-value=0.0038 Score=46.49 Aligned_cols=59 Identities=27% Similarity=0.397 Sum_probs=41.6
Q ss_pred cEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCc--ccccCCCCCCCCHHHHHHHHHHH
Q 034677 22 GAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPM--LTNKQFAELIQPVDERMRNVEAY 84 (87)
Q Consensus 22 ~~v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~--~~~k~~~~~i~~~~~R~~~v~~~ 84 (87)
.-|.+-|. +|.||..|+++|.+.. +.++|.+..+|. .+......-..+.++|.++++++
T Consensus 25 g~VpTmG~---LH~GH~~LI~~a~~~a-~~vVvTffvnP~qf~~~ed~~~yp~tle~d~~ll~~~ 85 (282)
T TIGR00018 25 GFVPTMGN---LHDGHMSLIDRAVAEN-DVVVVSIFVNPMQFGPNEDLEAYPRTLEEDCALLEKL 85 (282)
T ss_pred EEEECCCc---ccHHHHHHHHHHHHhC-CeEEEEecCChHHhCCccccccCCCCHHHHHHHHHHc
Confidence 33445566 9999999999999998 678887766642 22221223467889999988753
No 69
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=96.92 E-value=0.0033 Score=47.68 Aligned_cols=56 Identities=16% Similarity=0.185 Sum_probs=42.8
Q ss_pred cccEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEE-EEcCCCcccccCCCCCCCCHHHHHHHHHHHH
Q 034677 20 SYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVV-GVCDGPMLTNKQFAELIQPVDERMRNVEAYI 85 (87)
Q Consensus 20 ~~~~v~~gGtFDplH~GHl~ll~~a~~~~~d~viv-gv~~d~~~~~k~~~~~i~~~~~R~~~v~~~l 85 (87)
+-+++..-..=||+..||..|+++|+..+ |-|-+ .|..| .-.+|+++|++||++=+
T Consensus 144 gkkIgaIVMNANPFTLGH~YLVEqAaaqc-DwlHLFvV~eD---------~S~f~y~~R~~Lv~~G~ 200 (352)
T COG3053 144 GKKIGAIVMNANPFTLGHRYLVEQAAAQC-DWLHLFVVKED---------SSLFPYEDRLDLVKKGT 200 (352)
T ss_pred CCeeEEEEEeCCCccchhHHHHHHHHhhC-CEEEEEEEecc---------cccCCHHHHHHHHHHhh
Confidence 34566666788999999999999999999 55543 34444 23699999999998643
No 70
>cd00560 PanC Pantoate-beta-alanine ligase. PanC Pantoate-beta-alanine ligase, also known as pantothenate synthase, catalyzes the formation of pantothenate from pantoate and alanine. PanC belongs to a large superfamily of nucleotidyltransferases that includes , ATP sulfurylase (ATPS), phosphopantetheine adenylyltransferase (PPAT), and the amino-acyl tRNA synthetases. The enzymes of this family are structurally similar and share a dinucleotide-binding domain.
Probab=96.91 E-value=0.0042 Score=46.08 Aligned_cols=61 Identities=21% Similarity=0.393 Sum_probs=42.8
Q ss_pred CcccEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCcc--cccCCCCCCCCHHHHHHHHHH
Q 034677 19 NSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPML--TNKQFAELIQPVDERMRNVEA 83 (87)
Q Consensus 19 ~~~~~v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~~--~~k~~~~~i~~~~~R~~~v~~ 83 (87)
+....|.+-|. +|.||..|+++|.+.+ +.++|.+..+|.- +......-..+.+++.+.++.
T Consensus 22 ~~ig~V~TmG~---LH~GH~~LI~~a~~~a-~~vVvtf~~nP~qf~~~ed~~~y~~t~e~d~~ll~~ 84 (277)
T cd00560 22 KTIGFVPTMGA---LHEGHLSLVRRARAEN-DVVVVSIFVNPLQFGPNEDLDRYPRTLEADLALLEE 84 (277)
T ss_pred CeEEEEECCCc---ccHHHHHHHHHHHHhC-CEEEEEecCChhhcCCcccccccCCCHHHHHHHHHH
Confidence 33444556666 9999999999999998 7888888666522 212122336778999988875
No 71
>PRK00380 panC pantoate--beta-alanine ligase; Reviewed
Probab=96.71 E-value=0.0075 Score=44.77 Aligned_cols=55 Identities=24% Similarity=0.399 Sum_probs=38.8
Q ss_pred cCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCc--ccccCCCCCCCCHHHHHHHHHHH
Q 034677 29 TFDRLHDGHRLFLKASAELARDRIVVGVCDGPM--LTNKQFAELIQPVDERMRNVEAY 84 (87)
Q Consensus 29 tFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~--~~~k~~~~~i~~~~~R~~~v~~~ 84 (87)
|..-+|.||..|+++|.+.. +.+++.+..+|. .+.......+.+.++|.++++.+
T Consensus 29 tmG~lH~GH~~Li~~a~~~a-~~vVvTf~~~P~qf~~~~~~~~~~~t~e~~~~ll~~~ 85 (281)
T PRK00380 29 TMGALHEGHLSLVREARAEA-DIVVVSIFVNPLQFGPNEDLDRYPRTLEADLALLEAA 85 (281)
T ss_pred ccCceeHHHHHHHHHHHHhC-CEEEEeCCCCHHHhCCCccccccCCCHHHHHHHHHHc
Confidence 44449999999999999998 677777765542 22121223467889999988764
No 72
>KOG3199 consensus Nicotinamide mononucleotide adenylyl transferase [Coenzyme transport and metabolism]
Probab=96.65 E-value=0.0081 Score=43.51 Aligned_cols=59 Identities=22% Similarity=0.291 Sum_probs=41.0
Q ss_pred EEcccCCCCCHHHHHHHHHHHHHh----cCeEEEEEcCCCcccccCCCCCCCCHHHHHHHHHHHH
Q 034677 25 VLGGTFDRLHDGHRLFLKASAELA----RDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYI 85 (87)
Q Consensus 25 ~~gGtFDplH~GHl~ll~~a~~~~----~d~vivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~~l 85 (87)
+..|+|||+.++|+.+.+-|.... .-+|+=|+-+.-.=.+|+ +.+.|..+|++|++...
T Consensus 12 ~A~gSFNpiT~~HLrmfElAkd~l~~t~~~~Vv~GimSPV~DaYkK--KgLipa~hrv~~~ElAt 74 (234)
T KOG3199|consen 12 LACGSFNPITNLHLRMFELAKDYLNETGRYRVVKGIMSPVGDAYKK--KGLIPAYHRVRMVELAT 74 (234)
T ss_pred EEecccCchhHHHHHHHHHHHHHHhccCCeEEEeeEecccchhhhc--cccchhhhHHHHHHhhh
Confidence 556799999999999999999875 134444433321001232 46899999999999764
No 73
>PLN02660 pantoate--beta-alanine ligase
Probab=96.64 E-value=0.009 Score=44.59 Aligned_cols=60 Identities=25% Similarity=0.362 Sum_probs=40.9
Q ss_pred ccEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCcc--cccCCCCCCCCHHHHHHHHHHH
Q 034677 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPML--TNKQFAELIQPVDERMRNVEAY 84 (87)
Q Consensus 21 ~~~v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~~--~~k~~~~~i~~~~~R~~~v~~~ 84 (87)
..-|.+=|. +|.||..|+++|.+.+ +.++|.+..+|.- ++........+.++|.++++.+
T Consensus 23 igfVpTmG~---LH~GH~~LI~~a~~~a-~~vVvTffvnP~qf~~~ed~~~yp~tle~d~~ll~~~ 84 (284)
T PLN02660 23 IALVPTMGY---LHEGHLSLVRAARARA-DVVVVSIYVNPGQFAPGEDLDTYPRDFDGDLRKLAAL 84 (284)
T ss_pred EEEEEcCch---hhHHHHHHHHHHHHhC-CEEEEEEeCChHHcCCccccccCCCCHHHHHHHHHHc
Confidence 333444455 9999999999999998 6777777655422 2121223467889999988763
No 74
>PF01747 ATP-sulfurylase: ATP-sulfurylase; InterPro: IPR002650 This entry consists of sulphate adenylyltransferase or ATP-sulfurylase (2.7.7.4 from EC) some of which are part of a bifunctional polypeptide chain associated with adenosyl phosphosulphate (APS) kinase, IPR002891 from INTERPRO. Both enzymes are required for PAPS (phosphoadenosine-phosphosulphate) synthesis from inorganic sulphate []. ATP sulfurylase catalyses the synthesis of adenosine-phosphosulphate APS from ATP and inorganic sulphate [].; GO: 0004781 sulfate adenylyltransferase (ATP) activity, 0000103 sulfate assimilation; PDB: 3CR8_B 1M8P_C 1I2D_B 1JHD_A 1V47_B 1X6V_B 1XNJ_A 1XJQ_B 2QJF_A 2GKS_B ....
Probab=95.91 E-value=0.059 Score=38.69 Aligned_cols=59 Identities=31% Similarity=0.336 Sum_probs=41.9
Q ss_pred cEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCcccccCCCCCCCCHHHHHHHHHHHHh
Q 034677 22 GAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIK 86 (87)
Q Consensus 22 ~~v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~~l~ 86 (87)
+.|+--=|-||+|.||..+.+.|++...+.|+|-+.-... | ..-.|.+.|++..+.+++
T Consensus 21 ~~VvafqtrnPlHraHe~l~~~a~e~~~~~lll~plvG~~---k---~~d~~~~~r~~~~~~~~~ 79 (215)
T PF01747_consen 21 RRVVAFQTRNPLHRAHEYLMRRALEKAGDGLLLHPLVGPT---K---PGDIPYEVRVRCYEALID 79 (215)
T ss_dssp SSEEEEEESS---HHHHHHHHHHHHHHTSEEEEEEBESB----S---TTSCCHHHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhcCcEEEEeccCCC---C---cCCCCHHHHHHHHHHHHH
Confidence 3444445699999999999999999975677776644421 2 457899999999988875
No 75
>cd00517 ATPS ATP-sulfurylase. ATP-sulfurylase (ATPS), also known as sulfate adenylate transferase, catalyzes the transfer of an adenylyl group from ATP to sulfate, forming adenosine 5'-phosphosulfate (APS). This reaction is generally accompanied by a further reaction, catalyzed by APS kinase, in which APS is phosphorylated to yield 3'-phospho-APS (PAPS). In some organisms the APS kinase is a separate protein, while in others it is incorporated with ATP sulfurylase in a bifunctional enzyme that catalyzes both reactions. In bifunctional proteins, the domain that performs the kinase activity can be attached at the N-terminal end of the sulfurylase unit or at the C-terminal end, depending on the organism. While the reaction is ubiquitous among organisms, the physiological role of the reaction varies. In some organisms it is used to generate APS from sulfate and ATP, while in others it proceeds in the opposite direction to generate ATP from APS and pyrophosphate. ATP sulfurylase can be
Probab=95.59 E-value=0.093 Score=40.20 Aligned_cols=59 Identities=29% Similarity=0.252 Sum_probs=46.0
Q ss_pred cEEEEcccCCCCCHHHHHHHHHHHHHhc-CeEEEEEcCCCcccccCCCCCCCCHHHHHHHHHHHHh
Q 034677 22 GAVVLGGTFDRLHDGHRLFLKASAELAR-DRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIK 86 (87)
Q Consensus 22 ~~v~~gGtFDplH~GHl~ll~~a~~~~~-d~vivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~~l~ 86 (87)
+.|+--=|-||+|.||..+.+.|++..+ +-|+|-+.-... | ..-.|.+.|++..+.+++
T Consensus 157 ~~VvafqtrnP~HraHe~l~~~a~~~~~~~~lll~plvG~~---k---~~d~~~~~r~~~~~~l~~ 216 (353)
T cd00517 157 RRVVAFQTRNPMHRAHEELMKRAAEKLLNDGLLLHPLVGWT---K---PGDVPDEVRMRAYEALLE 216 (353)
T ss_pred CeEEEeecCCCCchhhHHHHHHHHHHcCCCcEEEEeccCCC---C---CCCCCHHHHHHHHHHHHH
Confidence 4565568999999999999999999875 567766654431 2 457899999999988875
No 76
>COG2046 MET3 ATP sulfurylase (sulfate adenylyltransferase) [Inorganic ion transport and metabolism]
Probab=95.59 E-value=0.079 Score=41.22 Aligned_cols=60 Identities=27% Similarity=0.253 Sum_probs=45.7
Q ss_pred cccEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCcccccCCCCCCCCHHHHHHHHHHHHh
Q 034677 20 SYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIK 86 (87)
Q Consensus 20 ~~~~v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~~l~ 86 (87)
+-++++---|+||+|.||..+-+.|++.. |-|+|-+.-.. ++ ..-.+.+.|++..+.+++
T Consensus 182 gwk~vvafQTRNp~HraHEyl~K~Al~~v-dgllv~plVG~----tk--~gD~~~e~rm~~ye~l~~ 241 (397)
T COG2046 182 GWKTVVAFQTRNPPHRAHEYLQKRALEKV-DGLLVHPLVGA----TK--PGDIPDEVRMEYYEALLK 241 (397)
T ss_pred CCeEEEEEecCCCchHHHHHHHHHHHHhc-CcEEEEeeecc----cc--CCCchHHHHHHHHHHHHH
Confidence 46788888999999999999999999998 44555443322 22 346788999998888775
No 77
>PRK04149 sat sulfate adenylyltransferase; Reviewed
Probab=95.48 E-value=0.1 Score=40.54 Aligned_cols=59 Identities=27% Similarity=0.318 Sum_probs=45.4
Q ss_pred ccEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCcccccCCCCCCCCHHHHHHHHHHHHh
Q 034677 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIK 86 (87)
Q Consensus 21 ~~~v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~~l~ 86 (87)
-+.|+--=|-||+|.||..|.+.|++.+ |-+++-+.-... | ..-.|.+.|++..+.+++
T Consensus 186 w~~VvafqTrnP~HraHe~l~~~a~e~~-d~lll~plvG~~---k---~~di~~~~r~~~~~~~~~ 244 (391)
T PRK04149 186 WKTVVAFQTRNPPHRAHEYLQKCALEIV-DGLLLNPLVGET---K---SGDIPAEVRMEAYEALLK 244 (391)
T ss_pred CCeEEEeecCCCCchHHHHHHHHHHHhc-CeEEEecCcCCC---C---CCCCCHHHHHHHHHHHHH
Confidence 4566666789999999999999999988 566664444321 2 457899999999988875
No 78
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=94.05 E-value=0.33 Score=39.19 Aligned_cols=60 Identities=23% Similarity=0.162 Sum_probs=44.9
Q ss_pred ccEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCcccccCCCCCCCCHHHHHHHHHHHHh
Q 034677 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIK 86 (87)
Q Consensus 21 ~~~v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~~l~ 86 (87)
-+.|+--=|-||+|.||..+.+.|++..+..|++-+.-.. .| ..-.|++.|++..+.+++
T Consensus 186 w~~v~afqtrnP~Hr~He~l~~~a~~~~d~~lll~p~~G~---~k---~~d~~~~~r~~~~~~~~~ 245 (568)
T PRK05537 186 WRRVVAFQTRNPLHRAHEELTKRAAREVGANLLIHPVVGM---TK---PGDIDHFTRVRCYEALLD 245 (568)
T ss_pred CCcEEEEecCCCCcHHHHHHHHHHHHhcCCeEEEecCCCC---CC---CCCCCHHHHHHHHHHHHH
Confidence 3566666789999999999999999987435555443322 12 457899999999998875
No 79
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=93.97 E-value=0.065 Score=42.91 Aligned_cols=37 Identities=22% Similarity=0.407 Sum_probs=30.0
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCC
Q 034677 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGP 60 (87)
Q Consensus 23 ~v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~ 60 (87)
.+-|--|==-+|.||+.|+++|.+.+ |.++|.+--||
T Consensus 21 ~ig~VPTMG~LH~GHlsLi~~A~~~~-d~vVvSIFVNP 57 (512)
T PRK13477 21 TIGFVPTMGALHQGHLSLIRRARQEN-DVVLVSIFVNP 57 (512)
T ss_pred cEEEECCCcchhHHHHHHHHHHHHhC-CEEEEEEccCc
Confidence 34444677789999999999999997 89999986654
No 80
>COG0414 PanC Panthothenate synthetase [Coenzyme metabolism]
Probab=93.67 E-value=0.12 Score=38.65 Aligned_cols=36 Identities=31% Similarity=0.462 Sum_probs=29.9
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCC
Q 034677 24 VVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGP 60 (87)
Q Consensus 24 v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~ 60 (87)
+-|-=|--.+|.||+.|+++|.+.. |.++|.+--++
T Consensus 24 Vg~VPTMG~LH~GHlsLVr~A~~~~-d~VVVSIFVNP 59 (285)
T COG0414 24 VGLVPTMGNLHEGHLSLVRRAKKEN-DVVVVSIFVNP 59 (285)
T ss_pred EEEEcCCcccchHHHHHHHHHhhcC-CeEEEEEEeCh
Confidence 4444577789999999999999887 89999987765
No 81
>PF02569 Pantoate_ligase: Pantoate-beta-alanine ligase; InterPro: IPR003721 D-Pantothenate is synthesized via four enzymes from ketoisovalerate, which is an intermediate of branched-chain amino acid synthesis []. Pantoate-beta-alanine ligase, also know as pantothenate synthase, (6.3.2.1 from EC) catalyzes the formation of pantothenate from pantoate and alanine in the pantothenate biosynthesis pathway [].; GO: 0004592 pantoate-beta-alanine ligase activity, 0015940 pantothenate biosynthetic process; PDB: 3MUE_C 1V8F_B 1UFV_A 2X3F_B 1MOP_A 3COY_B 3IOC_A 1N2E_A 3IVX_A 1N2H_A ....
Probab=93.47 E-value=0.12 Score=38.50 Aligned_cols=36 Identities=25% Similarity=0.429 Sum_probs=24.5
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCC
Q 034677 24 VVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGP 60 (87)
Q Consensus 24 v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~ 60 (87)
+-|--|=--+|.||+.|+++|...+ |.++|.+--+|
T Consensus 24 igfVPTMGaLHeGHlsLi~~A~~~~-d~vVVSIFVNP 59 (280)
T PF02569_consen 24 IGFVPTMGALHEGHLSLIRRARAEN-DVVVVSIFVNP 59 (280)
T ss_dssp EEEEEE-SS--HHHHHHHHHHHHHS-SEEEEEE---G
T ss_pred EEEECCCchhhHHHHHHHHHHHhCC-CEEEEEECcCc
Confidence 3334566678999999999999988 89999987665
No 82
>PLN02341 pfkB-type carbohydrate kinase family protein
Probab=87.05 E-value=0.15 Score=39.94 Aligned_cols=29 Identities=10% Similarity=-0.038 Sum_probs=26.0
Q ss_pred cccEEEEcccCCCCCHHHHHHHHHHHHHh
Q 034677 20 SYGAVVLGGTFDRLHDGHRLFLKASAELA 48 (87)
Q Consensus 20 ~~~~v~~gGtFDplH~GHl~ll~~a~~~~ 48 (87)
.-+.++..|.||.+|.||+.+|.++...+
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (470)
T PLN02341 413 NEDDTFWAELLKNSDCSEISFLSKMAING 441 (470)
T ss_pred CcchhHHHHhhcccccchhhhhhhhhhcc
Confidence 45788999999999999999999998765
No 83
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=82.37 E-value=0.62 Score=36.69 Aligned_cols=34 Identities=21% Similarity=0.276 Sum_probs=25.2
Q ss_pred cEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCC
Q 034677 22 GAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDG 59 (87)
Q Consensus 22 ~~v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d 59 (87)
.++++||||++ +-|| ++|+-|+. + ..+|.|+..-
T Consensus 319 diAFVGGSlv~-~GGH-N~LEpa~~-~-~pvi~Gp~~~ 352 (419)
T COG1519 319 DIAFVGGSLVP-IGGH-NPLEPAAF-G-TPVIFGPYTF 352 (419)
T ss_pred cEEEECCcccC-CCCC-ChhhHHHc-C-CCEEeCCccc
Confidence 68999999999 6888 56665553 3 4788887654
No 84
>KOG3042 consensus Panthothenate synthetase [Coenzyme transport and metabolism]
Probab=81.21 E-value=2.9 Score=30.87 Aligned_cols=38 Identities=24% Similarity=0.316 Sum_probs=29.8
Q ss_pred ccEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCC
Q 034677 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGP 60 (87)
Q Consensus 21 ~~~v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~ 60 (87)
-+++++ -|--.+|.||..|++++.... ++.+|.+.-+|
T Consensus 24 ~tIgfV-PTMG~LHeGH~SLvrqs~~~~-~~tVVSIfVNP 61 (283)
T KOG3042|consen 24 ETIGFV-PTMGCLHEGHASLVRQSVKEN-TYTVVSIFVNP 61 (283)
T ss_pred CeEEEe-cccccccccHHHHHHHHHhhC-ceEEEEEEech
Confidence 344443 477789999999999999998 78888876664
No 85
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=72.56 E-value=25 Score=27.44 Aligned_cols=54 Identities=20% Similarity=0.206 Sum_probs=31.8
Q ss_pred cCCCCCHHHHHHHHHHHHHhc--CeEEEEEcC------CCcccccCCCCCCCCHHHHHHHHHHH
Q 034677 29 TFDRLHDGHRLFLKASAELAR--DRIVVGVCD------GPMLTNKQFAELIQPVDERMRNVEAY 84 (87)
Q Consensus 29 tFDplH~GHl~ll~~a~~~~~--d~vivgv~~------d~~~~~k~~~~~i~~~~~R~~~v~~~ 84 (87)
|-+.+|.||+..+...+.+-+ -++++.+.+ |+.-+. ..++..+.++..+.++.+
T Consensus 43 T~~sLHlGhlv~l~~l~~lq~~G~~~~~ligd~ta~igDpsgk~--~~R~~l~~e~i~~n~~~i 104 (410)
T PRK13354 43 TAPSLHIGHLVPLMKLKRFQDAGHRPVILIGGFTGKIGDPSGKS--KERKLLTDEQVQHNAKTY 104 (410)
T ss_pred CCCCcchhhHHHHHHHHHHHHcCCeEEEEEcccccccCCCCccc--ccccCCCHHHHHHHHHHH
Confidence 445699999888877776632 345555522 322122 234567777776666544
No 86
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=71.43 E-value=20 Score=26.36 Aligned_cols=37 Identities=16% Similarity=0.143 Sum_probs=28.1
Q ss_pred cccEEEEc-ccCCCCCHHHHHHHHHHHHHhcCeEEEEE
Q 034677 20 SYGAVVLG-GTFDRLHDGHRLFLKASAELARDRIVVGV 56 (87)
Q Consensus 20 ~~~~v~~g-GtFDplH~GHl~ll~~a~~~~~d~vivgv 56 (87)
+-++|+|| ||++|.|-=--..+.+|.+...|-++.+-
T Consensus 124 ~grVvIf~gGtg~P~fTTDt~AALrA~ei~ad~ll~at 161 (238)
T COG0528 124 KGRVVIFGGGTGNPGFTTDTAAALRAEEIEADVLLKAT 161 (238)
T ss_pred cCCEEEEeCCCCCCCCchHHHHHHHHHHhCCcEEEEec
Confidence 35777655 59999999999999999999855555544
No 87
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=57.53 E-value=40 Score=22.65 Aligned_cols=65 Identities=17% Similarity=0.256 Sum_probs=42.2
Q ss_pred CCCCCCCccc--EEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcC-CCcccccCCCCCCCCHHHHHHHHHHHHhC
Q 034677 13 SNISPDNSYG--AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCD-GPMLTNKQFAELIQPVDERMRNVEAYIKG 87 (87)
Q Consensus 13 ~~~~~~~~~~--~v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~-d~~~~~k~~~~~i~~~~~R~~~v~~~l~~ 87 (87)
++.+.+...| +|.+.|.+||- ++.+|+..|-|-|+|+=.. ++= . +...-.-.+.|++.+++.|.+
T Consensus 22 ~rmqyp~~vRiIrv~CsGrvn~~------fvl~Al~~GaDGV~v~GC~~geC---H-y~~GN~ka~rR~~~lke~l~e 89 (132)
T COG1908 22 SRMQYPPNVRIIRVMCSGRVNPE------FVLKALRKGADGVLVAGCKIGEC---H-YISGNYKAKRRMELLKELLKE 89 (132)
T ss_pred ccccCCCceEEEEeeccCccCHH------HHHHHHHcCCCeEEEecccccce---e-eeccchHHHHHHHHHHHHHHH
Confidence 3445555554 56999999985 7778888875666665333 331 1 113345678999999998864
No 88
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=53.64 E-value=76 Score=23.22 Aligned_cols=20 Identities=35% Similarity=0.338 Sum_probs=14.8
Q ss_pred cCCCCCHHHHHHHHHHHHHh
Q 034677 29 TFDRLHDGHRLFLKASAELA 48 (87)
Q Consensus 29 tFDplH~GHl~ll~~a~~~~ 48 (87)
|=+.+|.||+.-+.....+-
T Consensus 9 Tg~~lHlGh~~~l~~~~~lq 28 (273)
T cd00395 9 TADSLHIGHLIGLLTFRRFQ 28 (273)
T ss_pred CCCCccHHHHHHHHHHHHHH
Confidence 44579999998777776653
No 89
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=52.24 E-value=34 Score=26.57 Aligned_cols=43 Identities=19% Similarity=0.111 Sum_probs=24.9
Q ss_pred CCCCcccEEEEcc-cCCCCCHHHHHH------HHHHHHHhcCeEEEEEcC
Q 034677 16 SPDNSYGAVVLGG-TFDRLHDGHRLF------LKASAELARDRIVVGVCD 58 (87)
Q Consensus 16 ~~~~~~~~v~~gG-tFDplH~GHl~l------l~~a~~~~~d~vivgv~~ 58 (87)
.|+++.+..+||= .+|++|.||..- +.+.++..+..|....+.
T Consensus 5 ~~~~~v~~YvCGpTvY~~~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~ni 54 (384)
T PRK12418 5 APGGTATMYVCGITPYDATHLGHAATYLAFDLVNRVWRDAGHDVHYVQNV 54 (384)
T ss_pred CCCCeeEEEecCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEEec
Confidence 3444555544443 589999999864 445555544445444443
No 90
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=51.10 E-value=33 Score=22.25 Aligned_cols=67 Identities=16% Similarity=0.204 Sum_probs=44.0
Q ss_pred cCCCCCCCcccE--EEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCcccccCCCCCCCCHHHHHHHHHHHHhC
Q 034677 12 NSNISPDNSYGA--VVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKG 87 (87)
Q Consensus 12 ~~~~~~~~~~~~--v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~~l~~ 87 (87)
.++.+.+...++ +-+.|..||. ++.+|++.|-|-|+|+-..... +. +..--.-.+.|++.++..|++
T Consensus 20 ~~~~~~p~~vriIrvpC~Grv~~~------~il~Af~~GADGV~V~gC~~g~--Ch-~~~Gn~~a~~Rv~~~k~~L~~ 88 (124)
T PF02662_consen 20 VSRLQYPPNVRIIRVPCSGRVDPE------FILRAFEKGADGVLVAGCHPGD--CH-YREGNYRAEKRVERLKKLLEE 88 (124)
T ss_pred hccCCCCCCeEEEEccCCCccCHH------HHHHHHHcCCCEEEEeCCCCCC--CC-cchhhHHHHHHHHHHHHHHHH
Confidence 345666666654 5788999987 4677888876788886544321 11 113345578899999888763
No 91
>PLN02486 aminoacyl-tRNA ligase
Probab=50.53 E-value=50 Score=25.69 Aligned_cols=44 Identities=20% Similarity=0.243 Sum_probs=27.2
Q ss_pred cCCCCCHHHHHHHHHHHHHh---cCeEEEEEcCCCcccccCCCCCCCCHHHH
Q 034677 29 TFDRLHDGHRLFLKASAELA---RDRIVVGVCDGPMLTNKQFAELIQPVDER 77 (87)
Q Consensus 29 tFDplH~GHl~ll~~a~~~~---~d~vivgv~~d~~~~~k~~~~~i~~~~~R 77 (87)
|=+.+|.||+.-+.....+- +-.++|.++++...-. . ..+.++-
T Consensus 83 Sg~~lHlGHlv~~~~~~~lQ~~~~~~~~I~iaD~e~~~~----~-~~~~e~i 129 (383)
T PLN02486 83 SSEALHLGHLIPFMFTKYLQDAFKVPLVIQLTDDEKFLW----K-NLSVEES 129 (383)
T ss_pred CCccccHHHHHHHHHHHHHHHhCCCeEEEEecCHHHHhh----c-CCCHHHH
Confidence 44569999998887777653 3466666765432111 1 3666776
No 92
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=48.41 E-value=62 Score=25.43 Aligned_cols=49 Identities=22% Similarity=0.213 Sum_probs=28.3
Q ss_pred cCCCCCHHHHHHHHHHHHHhc--CeEEEEEcCC-CcccccCCCCCCCCHHHHHHHHH
Q 034677 29 TFDRLHDGHRLFLKASAELAR--DRIVVGVCDG-PMLTNKQFAELIQPVDERMRNVE 82 (87)
Q Consensus 29 tFDplH~GHl~ll~~a~~~~~--d~vivgv~~d-~~~~~k~~~~~i~~~~~R~~~v~ 82 (87)
|=+-+|.||+..+...+.+-+ -+++|-+.+- ..+- .|.-..++|..+-+
T Consensus 42 Ta~slHlGhlv~l~kL~~fQ~aGh~~ivLigd~ta~Ig-----DpsGk~e~r~~l~~ 93 (401)
T COG0162 42 TAPSLHLGHLVPLMKLRRFQDAGHKPIVLIGDATAMIG-----DPSGKSEERKLLTR 93 (401)
T ss_pred CCCccchhhHHHHHHHHHHHHCCCeEEEEecccceecC-----CCCCCHHHHhhccH
Confidence 455699999999988887742 3444444332 1221 33455555555543
No 93
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=45.73 E-value=48 Score=26.09 Aligned_cols=43 Identities=23% Similarity=0.182 Sum_probs=25.5
Q ss_pred CCCCcccEEEEcc-cCCCCCHHHHHH------HHHHHHHhcCeEEEEEcC
Q 034677 16 SPDNSYGAVVLGG-TFDRLHDGHRLF------LKASAELARDRIVVGVCD 58 (87)
Q Consensus 16 ~~~~~~~~v~~gG-tFDplH~GHl~l------l~~a~~~~~d~vivgv~~ 58 (87)
.|+...++.+||- .+|++|.||..- +.+.+++.+-.|....+.
T Consensus 32 ~p~~~v~~YvCGpTvY~~~HIGhart~V~~Dvl~R~lr~~G~~V~fV~ni 81 (411)
T TIGR03447 32 EPGPEAGMYVCGITPYDATHLGHAATYLTFDLVNRVWRDAGHRVHYVQNV 81 (411)
T ss_pred cCCCcceEEEeCCccCCCcccccchHHHHHHHHHHHHHhcCCceEEeeCC
Confidence 3444555555554 489999999864 455555544455544443
No 94
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=41.61 E-value=1.4e+02 Score=21.75 Aligned_cols=56 Identities=18% Similarity=0.231 Sum_probs=32.2
Q ss_pred cCCCCCHHHHHHHHHHHHHhc--CeEEEEEcCCCccc-ccC---CCCCCCCHHHHHHHHHHH
Q 034677 29 TFDRLHDGHRLFLKASAELAR--DRIVVGVCDGPMLT-NKQ---FAELIQPVDERMRNVEAY 84 (87)
Q Consensus 29 tFDplH~GHl~ll~~a~~~~~--d~vivgv~~d~~~~-~k~---~~~~i~~~~~R~~~v~~~ 84 (87)
|-+.+|.||+.-+.....+-+ -.+++-+.+...+- ++. ..++..+.++..+....+
T Consensus 10 Tg~~lHLG~~~~~~~~~~lq~~g~~~~ilI~D~~a~~~~~~~~~~~r~~~~~~~i~~~~~~~ 71 (269)
T cd00805 10 TAPSLHLGHLVPLMKLRDFQQAGHEVIVLIGDATAMIGDPSGKSEERKLLDLELIRENAKYY 71 (269)
T ss_pred CCCcccHHHHHHHHHHHHHHHCCCeEEEEECCCeeecCCCCCccccccCCCHHHHHHHHHHH
Confidence 456899999987776666642 35667666653321 110 123346666666555443
No 95
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=37.70 E-value=1e+02 Score=19.75 Aligned_cols=35 Identities=14% Similarity=0.122 Sum_probs=23.1
Q ss_pred CeEEEEEcCCCcccccCCCCCCCCHHHHHHHHHHHHh
Q 034677 50 DRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIK 86 (87)
Q Consensus 50 d~vivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~~l~ 86 (87)
.++||=++....-+- .++|.++.++|.+|...+..
T Consensus 27 tKiivKl~~~g~g~P--~REp~isee~qk~mm~~~~r 61 (98)
T PF11069_consen 27 TKIIVKLQKRGQGPP--PREPVISEEEQKAMMAYYYR 61 (98)
T ss_pred eeEEEEeccCCCCCC--CCCCCCCHHHHHHHHHHHHH
Confidence 467776655422211 23789999999999877643
No 96
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=37.50 E-value=2e+02 Score=22.43 Aligned_cols=52 Identities=17% Similarity=0.141 Sum_probs=28.3
Q ss_pred cCCCCCHHHHHHHHHHHHHhc--CeEEEEEc------CCCcccccCCCCCCCCHHHHHHHHH
Q 034677 29 TFDRLHDGHRLFLKASAELAR--DRIVVGVC------DGPMLTNKQFAELIQPVDERMRNVE 82 (87)
Q Consensus 29 tFDplH~GHl~ll~~a~~~~~--d~vivgv~------~d~~~~~k~~~~~i~~~~~R~~~v~ 82 (87)
|-+.+|.||+.-+.....+-+ .++++-+. +|+.-+. ...+..+.++-...++
T Consensus 43 Tg~slHlGhlv~l~~l~~lQ~~G~~~~~ligd~ta~igDpsgk~--~~r~~l~~e~i~~n~~ 102 (408)
T PRK05912 43 TAPSLHLGHLVPLLKLRRFQDAGHKPIALIGGFTGMIGDPSGKS--ETRKLLTREQVAENAE 102 (408)
T ss_pred CCCCccHHhHHHHHHHHHHHHCCCcEEEEEcCceeEcCCCCCCc--hhhccCCHHHHHHHHH
Confidence 556699999887766666532 34555442 2332111 1234556666555554
No 97
>KOG4238 consensus Bifunctional ATP sulfurylase/adenosine 5'-phosphosulfate kinase [Nucleotide transport and metabolism]
Probab=37.42 E-value=20 Score=28.73 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=18.3
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHH
Q 034677 23 AVVLGGTFDRLHDGHRLFLKASAEL 47 (87)
Q Consensus 23 ~v~~gGtFDplH~GHl~ll~~a~~~ 47 (87)
.|+.----||+|+||..|.+...+.
T Consensus 417 avfafqlrnpvhnghallm~dt~~~ 441 (627)
T KOG4238|consen 417 AVFAFQLRNPVHNGHALLMQDTRRR 441 (627)
T ss_pred eEEEeeecCccccchhhHhHhHHHH
Confidence 4454455699999999999766554
No 98
>COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]
Probab=37.07 E-value=1e+02 Score=25.83 Aligned_cols=68 Identities=13% Similarity=0.110 Sum_probs=42.1
Q ss_pred CCCCcccEE--EEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCcccccCCCCCCCCHHHHHHHHHHHHh
Q 034677 16 SPDNSYGAV--VLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIK 86 (87)
Q Consensus 16 ~~~~~~~~v--~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~~l~ 86 (87)
.++.+|--+ .++=.=|.+|+||-.....+++.....+++=..++.=+. ...+......+..++-.||+
T Consensus 575 ~~g~kYP~~LITTs~~DDRVHPaHarKfaa~L~e~~~pv~~~e~t~gGH~---g~~~~~~~A~~~a~~~afl~ 644 (648)
T COG1505 575 KPGQKYPPTLITTSLHDDRVHPAHARKFAAKLQEVGAPVLLREETKGGHG---GAAPTAEIARELADLLAFLL 644 (648)
T ss_pred CccccCCCeEEEcccccccccchHHHHHHHHHHhcCCceEEEeecCCccc---CCCChHHHHHHHHHHHHHHH
Confidence 344555433 344456899999999998888887556666555543221 12334444667777777765
No 99
>PF04978 DUF664: Protein of unknown function (DUF664); InterPro: IPR007061 The proteins in this family of unknown function contain several conserved histidines at their N terminus that may form a metal binding site.; PDB: 2OU6_A.
Probab=34.92 E-value=24 Score=23.34 Aligned_cols=12 Identities=33% Similarity=0.504 Sum_probs=9.9
Q ss_pred CHHHHHHHHHHH
Q 034677 34 HDGHRLFLKASA 45 (87)
Q Consensus 34 H~GHl~ll~~a~ 45 (87)
|.||+.++++..
T Consensus 137 H~GhadilRe~l 148 (150)
T PF04978_consen 137 HAGHADILRELL 148 (150)
T ss_dssp HHHHHHHHHHHH
T ss_pred ChhHHHHHHHHh
Confidence 889999988764
No 100
>PF14034 Spore_YtrH: Sporulation protein YtrH
Probab=34.34 E-value=10 Score=24.48 Aligned_cols=10 Identities=50% Similarity=1.072 Sum_probs=8.2
Q ss_pred EEEcccCCCC
Q 034677 24 VVLGGTFDRL 33 (87)
Q Consensus 24 v~~gGtFDpl 33 (87)
+-.|||||++
T Consensus 50 aAiGGTfd~~ 59 (102)
T PF14034_consen 50 AAIGGTFDTF 59 (102)
T ss_pred HHHhcCchHH
Confidence 3579999996
No 101
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=32.77 E-value=15 Score=25.56 Aligned_cols=26 Identities=23% Similarity=0.128 Sum_probs=15.7
Q ss_pred CCCCCHHHHHH------HHHHHHHhcCeEEEE
Q 034677 30 FDRLHDGHRLF------LKASAELARDRIVVG 55 (87)
Q Consensus 30 FDplH~GHl~l------l~~a~~~~~d~vivg 55 (87)
.+|+|.||+.- +.+.++..+-.|+..
T Consensus 12 ~~~~HiGH~R~~vigD~l~R~l~~~G~~V~~~ 43 (212)
T cd00671 12 TGPLHVGHLRNAIIGDSLARILEFLGYDVTRE 43 (212)
T ss_pred CCCccccccHHHHHHHHHHHHHHHCCCcEEEE
Confidence 57999999974 344444443445543
No 102
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=29.22 E-value=26 Score=26.49 Aligned_cols=11 Identities=36% Similarity=0.292 Sum_probs=7.6
Q ss_pred CCCCCHHHHHH
Q 034677 30 FDRLHDGHRLF 40 (87)
Q Consensus 30 FDplH~GHl~l 40 (87)
-=|+|.||++=
T Consensus 32 ~kplHvGHlR~ 42 (354)
T PF00750_consen 32 TKPLHVGHLRN 42 (354)
T ss_dssp TSS-BHHHHHH
T ss_pred CCCCcCCcchh
Confidence 34899999964
No 103
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=28.24 E-value=1.6e+02 Score=18.69 Aligned_cols=12 Identities=33% Similarity=0.285 Sum_probs=9.2
Q ss_pred CCCCCHHHHHHH
Q 034677 30 FDRLHDGHRLFL 41 (87)
Q Consensus 30 FDplH~GHl~ll 41 (87)
-.++|.||+.-.
T Consensus 9 ~~~~HlGh~~~~ 20 (143)
T cd00802 9 NGYLHIGHLRTI 20 (143)
T ss_pred CCCccHhHHHHH
Confidence 357999999843
No 104
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=27.34 E-value=77 Score=24.40 Aligned_cols=30 Identities=17% Similarity=0.119 Sum_probs=15.7
Q ss_pred CCCCHHHHHHH------HHHHHHhcCeEEEEEcCCC
Q 034677 31 DRLHDGHRLFL------KASAELARDRIVVGVCDGP 60 (87)
Q Consensus 31 DplH~GHl~ll------~~a~~~~~d~vivgv~~d~ 60 (87)
.++|.||+.-. .+...+-+..+++.-.+|+
T Consensus 12 g~lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDe 47 (391)
T PF09334_consen 12 GDLHLGHLYPYLAADVLARYLRLRGHDVLFVTGTDE 47 (391)
T ss_dssp SS-BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-
T ss_pred CCCCCChhHHHHHHHHHHHHHhhcccceeeEEecch
Confidence 46999999722 2222232366777666665
No 105
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]
Probab=26.96 E-value=1.7e+02 Score=21.93 Aligned_cols=49 Identities=18% Similarity=0.182 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhcCeEEEEEcCCC-cccccCCCCCCCCHHHHHHHHHHHHh
Q 034677 37 HRLFLKASAELARDRIVVGVCDGP-MLTNKQFAELIQPVDERMRNVEAYIK 86 (87)
Q Consensus 37 Hl~ll~~a~~~~~d~vivgv~~d~-~~~~k~~~~~i~~~~~R~~~v~~~l~ 86 (87)
|+.++.++.....-.|-|.++++. .+. |...+...|.++|++.++...+
T Consensus 131 Dld~l~~~~~~~~v~V~~Sitt~d~~l~-k~~EP~apsp~~Ri~al~~l~e 180 (297)
T COG1533 131 DLDLLLELAERGKVRVAVSITTLDEELA-KILEPRAPSPEERLEALKELSE 180 (297)
T ss_pred hHHHHHhhhhccceEEEEEeecCcHHHH-HhcCCCCcCHHHHHHHHHHHHH
Confidence 445555555443123344444533 121 1223456788999999987654
No 106
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=26.90 E-value=37 Score=27.23 Aligned_cols=31 Identities=23% Similarity=0.196 Sum_probs=19.3
Q ss_pred EEEcc--cCCCCCHHHHHH------HHHHHHHhcCeEEE
Q 034677 24 VVLGG--TFDRLHDGHRLF------LKASAELARDRIVV 54 (87)
Q Consensus 24 v~~gG--tFDplH~GHl~l------l~~a~~~~~d~viv 54 (87)
.+++| .+|++|.||..- +.+.++..+..|..
T Consensus 24 mY~CGpTVYd~~HiGh~r~~v~~Dvl~R~l~~~G~~V~~ 62 (481)
T PRK14534 24 VYACGPTVYNYAHIGNFRTYIFEDLLIKSLRLLKYNVNY 62 (481)
T ss_pred EEeCCCCCCCCCCccchhHHHHHHHHHHHHHHcCCceEE
Confidence 35555 499999999874 34555554334444
No 107
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=26.64 E-value=79 Score=24.94 Aligned_cols=31 Identities=13% Similarity=0.099 Sum_probs=17.8
Q ss_pred cCCCCCHHHHH------HHHHHHHHhcCeEEEEEcCC
Q 034677 29 TFDRLHDGHRL------FLKASAELARDRIVVGVCDG 59 (87)
Q Consensus 29 tFDplH~GHl~------ll~~a~~~~~d~vivgv~~d 59 (87)
.-+.+|.||+. ++.+.+.+.+..|......|
T Consensus 10 ~ng~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D 46 (530)
T TIGR00398 10 ANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTD 46 (530)
T ss_pred CCCCcccchhHHHHHHHHHHHHHHhcCCeEEEecccC
Confidence 34689999997 23333333334555555444
No 108
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=25.77 E-value=1.1e+02 Score=21.65 Aligned_cols=32 Identities=19% Similarity=0.047 Sum_probs=18.7
Q ss_pred ccCCCCCHHHHHH------HHHHHHHhcCeEEEEEcCC
Q 034677 28 GTFDRLHDGHRLF------LKASAELARDRIVVGVCDG 59 (87)
Q Consensus 28 GtFDplH~GHl~l------l~~a~~~~~d~vivgv~~d 59 (87)
-.++++|.||..- +.+.+.+.+..|+.....|
T Consensus 29 t~y~~~HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~d 66 (213)
T cd00672 29 TVYDYAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNIT 66 (213)
T ss_pred ccCCCcccccchhHHHHHHHHHHHHhcCCeeEEEeecC
Confidence 3478999999752 3344444334555555444
No 109
>PF15643 Tox-PL-2: Papain fold toxin 2
Probab=24.99 E-value=34 Score=21.97 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=17.8
Q ss_pred CCCCCcccEEEEcccCCCCCHHH
Q 034677 15 ISPDNSYGAVVLGGTFDRLHDGH 37 (87)
Q Consensus 15 ~~~~~~~~~v~~gGtFDplH~GH 37 (87)
.+.+..+.+.+.+=.||-+|++=
T Consensus 66 t~NG~H~gI~V~~~VFDNl~p~G 88 (100)
T PF15643_consen 66 TTNGRHYGIEVGEIVFDNLHPEG 88 (100)
T ss_pred eeCCEEEEEEEeeEEecccCccc
Confidence 45566688888888999999763
No 110
>COG1564 THI80 Thiamine pyrophosphokinase [Coenzyme metabolism]
Probab=23.30 E-value=53 Score=23.63 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=20.2
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHHh
Q 034677 24 VVLGGTFDRLHDGHRLFLKASAELA 48 (87)
Q Consensus 24 v~~gGtFDplH~GHl~ll~~a~~~~ 48 (87)
+.+||.+|+. .+|+.++.+..+.+
T Consensus 99 Ga~GGR~DH~-l~nl~ll~~~~~~~ 122 (212)
T COG1564 99 GALGGRLDHA-LANLFLLLRPAKSG 122 (212)
T ss_pred ecCCChHHHH-HHHHHHHHhhhhcc
Confidence 3579999999 99999999986654
No 111
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=23.05 E-value=1.5e+02 Score=25.26 Aligned_cols=36 Identities=17% Similarity=0.063 Sum_probs=21.2
Q ss_pred ccEEEEcc-cCCCCCHHHHHH------HHHHHHHhcCeEEEEE
Q 034677 21 YGAVVLGG-TFDRLHDGHRLF------LKASAELARDRIVVGV 56 (87)
Q Consensus 21 ~~~v~~gG-tFDplH~GHl~l------l~~a~~~~~d~vivgv 56 (87)
.+..+||= .+|++|.||..- +.+.++..+-.|....
T Consensus 249 V~mYvCGPTVYd~~HIGHaRt~V~~DVL~R~Lr~~Gy~V~fV~ 291 (699)
T PRK14535 249 VRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGYPLTYVR 291 (699)
T ss_pred eEEEecCCcCCCCCcccchhHHHHHHHHHHHHHHcCCceEEEe
Confidence 33444443 499999999864 4555555433444433
No 112
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=23.03 E-value=1.6e+02 Score=22.73 Aligned_cols=30 Identities=27% Similarity=0.296 Sum_probs=19.3
Q ss_pred cCCCCCHHHHHHHHHHHHHh--cCeEEEEEcC
Q 034677 29 TFDRLHDGHRLFLKASAELA--RDRIVVGVCD 58 (87)
Q Consensus 29 tFDplH~GHl~ll~~a~~~~--~d~vivgv~~ 58 (87)
|-|.+|.||+.-+.....+- +-++++-+.+
T Consensus 40 Tg~~lHlGh~v~l~~l~~lq~~G~~~~iligd 71 (377)
T TIGR00234 40 TAPSLHLGHLVPLLKLRDFQQAGHEVIVLLGD 71 (377)
T ss_pred CCCCccHHHHHHHHHHHHHHHCCCcEEEEEec
Confidence 66789999988776666553 1345555533
No 113
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=22.96 E-value=1.5e+02 Score=22.78 Aligned_cols=31 Identities=13% Similarity=0.292 Sum_probs=22.2
Q ss_pred CCCHHHHHHHHHHHHHhc--CeEEEEEcCCCcc
Q 034677 32 RLHDGHRLFLKASAELAR--DRIVVGVCDGPML 62 (87)
Q Consensus 32 plH~GHl~ll~~a~~~~~--d~vivgv~~d~~~ 62 (87)
.+|.||+.-+.....+-+ -.++|-+++...+
T Consensus 78 ~lHLGh~~~~~~~~~lQ~~g~~~~i~IaD~ha~ 110 (368)
T PRK12285 78 PMHIGHKMVFDELKWHQEFGANVYIPIADDEAY 110 (368)
T ss_pred CccHHHHHHHHHHHHHHhcCCCEEEEecchHHH
Confidence 699999977766666542 4678888777544
No 114
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=22.75 E-value=1.3e+02 Score=21.74 Aligned_cols=31 Identities=26% Similarity=0.205 Sum_probs=22.1
Q ss_pred cCCCCCHHHHHHHHHHHHHh--cCeEEEEEcCCC
Q 034677 29 TFDRLHDGHRLFLKASAELA--RDRIVVGVCDGP 60 (87)
Q Consensus 29 tFDplH~GHl~ll~~a~~~~--~d~vivgv~~d~ 60 (87)
|-+ +|.||+..+.....+- +-.+++-+.+..
T Consensus 15 Tg~-lHlG~l~~~~~~~~lq~~g~~~~i~iaD~~ 47 (292)
T PF00579_consen 15 TGD-LHLGHLVPIMKLIWLQKAGFKVIILIADLH 47 (292)
T ss_dssp SSS--BHHHHHHHHHHHHHHHTTSEEEEEEEHHH
T ss_pred CCc-ccchHHHHHHHHHHHHhcCCccceEecchh
Confidence 555 9999999998887775 357777776653
No 115
>KOG3419 consensus Mitochondrial/chloroplast ribosomal protein S16 [Translation, ribosomal structure and biogenesis]
Probab=22.69 E-value=35 Score=22.32 Aligned_cols=9 Identities=44% Similarity=0.553 Sum_probs=7.3
Q ss_pred EcccCCCCC
Q 034677 26 LGGTFDRLH 34 (87)
Q Consensus 26 ~gGtFDplH 34 (87)
.-|||||+-
T Consensus 36 ~lG~ydPlp 44 (112)
T KOG3419|consen 36 QLGTYDPLP 44 (112)
T ss_pred heecccCCC
Confidence 349999996
No 116
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=22.47 E-value=1.9e+02 Score=19.77 Aligned_cols=42 Identities=17% Similarity=0.249 Sum_probs=26.1
Q ss_pred CcccEEEEcccCCCCCHHHHHH----HHHHHHHh-cCeEEEEEcCCC
Q 034677 19 NSYGAVVLGGTFDRLHDGHRLF----LKASAELA-RDRIVVGVCDGP 60 (87)
Q Consensus 19 ~~~~~v~~gGtFDplH~GHl~l----l~~a~~~~-~d~vivgv~~d~ 60 (87)
..+..++++|.++.++...+.- .+...+.. .++.++|++...
T Consensus 39 ~~~D~lilPGG~~~~~~~~L~~~~~~~~~i~~~~~~g~pilgICgG~ 85 (198)
T cd03130 39 PDADGLYLGGGYPELFAEELSANQSMRESIRAFAESGGPIYAECGGL 85 (198)
T ss_pred CCCCEEEECCCchHHHHHHHHhhHHHHHHHHHHHHcCCCEEEEcccH
Confidence 3488999999998876655522 11122211 257888888764
No 117
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=21.89 E-value=66 Score=23.53 Aligned_cols=30 Identities=20% Similarity=0.142 Sum_probs=17.0
Q ss_pred CCCCCHHHHH------HHHHHHHHhcCeEEEEEcCC
Q 034677 30 FDRLHDGHRL------FLKASAELARDRIVVGVCDG 59 (87)
Q Consensus 30 FDplH~GHl~------ll~~a~~~~~d~vivgv~~d 59 (87)
.+++|.||.. ++.+.+.+.+..|......|
T Consensus 12 ~g~~HiGH~~~~i~~D~i~R~~r~~G~~v~~~~g~D 47 (312)
T cd00668 12 NGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWD 47 (312)
T ss_pred CCCcchhHHHHHHHHHHHHHHHHhCCCCCCCCCccC
Confidence 4679999986 33444444334444444444
No 118
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=21.43 E-value=1.3e+02 Score=22.46 Aligned_cols=31 Identities=19% Similarity=0.168 Sum_probs=20.8
Q ss_pred CCCCCHHHHHHHHHHHHHh---cCeEEEEEcCCC
Q 034677 30 FDRLHDGHRLFLKASAELA---RDRIVVGVCDGP 60 (87)
Q Consensus 30 FDplH~GHl~ll~~a~~~~---~d~vivgv~~d~ 60 (87)
--++|.||+.-+..+.... ++++++=+-+-.
T Consensus 11 tG~lHiG~~r~al~n~~~Ar~~~G~~iLRieDtD 44 (314)
T PF00749_consen 11 TGYLHIGHARTALLNYLFARKYGGKFILRIEDTD 44 (314)
T ss_dssp SSS-BHHHHHHHHHHHHHHHHTTSEEEEEEETSS
T ss_pred CCCcccchhHHHHHHHHHHhccCceEEEeccccc
Confidence 3579999998886555443 378888885543
No 119
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=21.32 E-value=35 Score=27.99 Aligned_cols=19 Identities=26% Similarity=0.211 Sum_probs=11.8
Q ss_pred ccEEEEcccCC---CCCHHHHH
Q 034677 21 YGAVVLGGTFD---RLHDGHRL 39 (87)
Q Consensus 21 ~~~v~~gGtFD---plH~GHl~ 39 (87)
.++++=--|=| |+|.||++
T Consensus 117 ~kV~iE~sSaNptkplHiGHlR 138 (577)
T COG0018 117 KKVVIEYSSANPTGPLHIGHLR 138 (577)
T ss_pred CEEEEEEeCCCCCCCcccchhh
Confidence 44444333433 79999996
No 120
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=21.21 E-value=3.3e+02 Score=19.92 Aligned_cols=31 Identities=26% Similarity=0.159 Sum_probs=21.5
Q ss_pred CCCHHHHHH-HHHHHHHh--cCeEEEEEcCCCcc
Q 034677 32 RLHDGHRLF-LKASAELA--RDRIVVGVCDGPML 62 (87)
Q Consensus 32 plH~GHl~l-l~~a~~~~--~d~vivgv~~d~~~ 62 (87)
.+|.||..- +.....+- +-.+++-|.+...+
T Consensus 11 ~lHLG~~~~al~~~~~lQ~ag~~~~~~IaD~ha~ 44 (280)
T cd00806 11 SLHLGHYLGAFRFWVWLQEAGYELFFFIADLHAL 44 (280)
T ss_pred hhhHHHHHHHHHHHHHHHhCCCCEEEEecchHHH
Confidence 699999988 66665553 24677777776543
No 121
>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []. Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process
Probab=20.96 E-value=1.5e+02 Score=19.51 Aligned_cols=43 Identities=19% Similarity=0.160 Sum_probs=27.4
Q ss_pred CCCcccEEEEcccCCCCCHHHHHH----HHHHHHHh-cCeEEEEEcCC
Q 034677 17 PDNSYGAVVLGGTFDRLHDGHRLF----LKASAELA-RDRIVVGVCDG 59 (87)
Q Consensus 17 ~~~~~~~v~~gGtFDplH~GHl~l----l~~a~~~~-~d~vivgv~~d 59 (87)
.+.....+++||+|+-+|.--+.- .+..++.. ....++|++..
T Consensus 4 ~~~~~D~i~lpGg~pe~~~~~l~~~~~~~~~I~~~~~~G~pi~aeCGG 51 (158)
T PF07685_consen 4 LPPDADGIYLPGGYPELFALELSRNRGLKEAIREAAEAGGPIYAECGG 51 (158)
T ss_pred CCCCCCEEEECCCcHHHHHHHHHHHhCHHHHHHHHHHcCCcEEEEchH
Confidence 356778999999999998766532 22222222 14677887764
No 122
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=20.73 E-value=34 Score=25.68 Aligned_cols=14 Identities=36% Similarity=0.520 Sum_probs=11.5
Q ss_pred EEEEcccCCCCCHH
Q 034677 23 AVVLGGTFDRLHDG 36 (87)
Q Consensus 23 ~v~~gGtFDplH~G 36 (87)
-.++|+.|||+|.|
T Consensus 271 ~~l~G~~~~~~~~~ 284 (285)
T KOG4395|consen 271 SALDGYPFDLLHSD 284 (285)
T ss_pred HHhcCCCCCCCCCC
Confidence 34789999999975
No 123
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=20.62 E-value=2.1e+02 Score=21.54 Aligned_cols=31 Identities=19% Similarity=0.213 Sum_probs=20.7
Q ss_pred CCCHHHHHHHHHHHHHh--cCeEEEEEcCCCcc
Q 034677 32 RLHDGHRLFLKASAELA--RDRIVVGVCDGPML 62 (87)
Q Consensus 32 plH~GHl~ll~~a~~~~--~d~vivgv~~d~~~ 62 (87)
.+|.||..-+....... +-.+++-+.+...+
T Consensus 14 ~~HlG~~l~~~~~~~~~q~~~~~~i~IaD~ha~ 46 (328)
T TIGR00233 14 KMHLGHYLGAIQTKWLQQFGVELFICIADLHAI 46 (328)
T ss_pred HhHHHHHHHHHHHHHHHhCCCCEEEEeecchhh
Confidence 69999988776665543 23577777776543
No 124
>PLN02946 cysteine-tRNA ligase
Probab=20.40 E-value=2e+02 Score=23.69 Aligned_cols=36 Identities=22% Similarity=0.132 Sum_probs=20.8
Q ss_pred cEEEEcc-cCCCCCHHHHHH------HHHHHHHhcCeEEEEEc
Q 034677 22 GAVVLGG-TFDRLHDGHRLF------LKASAELARDRIVVGVC 57 (87)
Q Consensus 22 ~~v~~gG-tFDplH~GHl~l------l~~a~~~~~d~vivgv~ 57 (87)
+..+||= .+|++|.||..- +.+.++..+-.|....+
T Consensus 82 ~~Y~CGpTvYd~~HIGhaR~~V~~Dvl~R~Lr~~Gy~V~~V~n 124 (557)
T PLN02946 82 GMYVCGVTAYDLSHIGHARVYVTFDVLYRYLKHLGYEVRYVRN 124 (557)
T ss_pred eEEEeCCccCCCCccccchhhHHHHHHHHHHHhcCCcEEEEEC
Confidence 3334443 599999999863 45555554344444443
Done!