Query 034677
Match_columns 87
No_of_seqs 104 out of 1007
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 08:25:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034677.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034677hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3do8_A Phosphopantetheine aden 99.8 1.6E-19 5.5E-24 120.8 5.7 61 23-85 2-62 (148)
2 3nbk_A Phosphopantetheine aden 99.8 2.8E-18 9.6E-23 118.3 8.3 62 18-86 18-79 (177)
3 3nv7_A Phosphopantetheine aden 99.7 4.4E-18 1.5E-22 115.0 7.4 59 21-86 2-60 (157)
4 4f3r_A Phosphopantetheine aden 99.7 5.7E-18 1.9E-22 114.8 6.5 59 21-86 5-63 (162)
5 3nd5_A Phosphopantetheine aden 99.7 8.1E-18 2.8E-22 115.0 7.1 59 21-86 2-60 (171)
6 3f3m_A Phosphopantetheine aden 99.7 1.7E-17 5.9E-22 113.1 7.0 59 21-86 3-61 (168)
7 1vlh_A Phosphopantetheine aden 99.7 2.3E-17 8E-22 112.0 7.4 61 19-86 10-70 (173)
8 2qjt_B Nicotinamide-nucleotide 99.7 4.1E-17 1.4E-21 118.6 6.7 62 21-86 7-68 (352)
9 3k9w_A Phosphopantetheine aden 99.7 1.6E-16 5.5E-21 110.0 8.6 60 20-86 21-80 (187)
10 1qjc_A Phosphopantetheine aden 99.7 1.3E-16 4.5E-21 105.2 7.4 59 21-86 1-59 (158)
11 2b7l_A Glycerol-3-phosphate cy 99.7 1.1E-16 3.7E-21 103.5 5.5 61 21-83 1-61 (132)
12 1coz_A Protein (glycerol-3-pho 99.7 6.9E-17 2.4E-21 103.9 4.2 61 21-83 1-61 (129)
13 1lw7_A Transcriptional regulat 99.6 1.3E-16 4.5E-21 117.4 5.9 64 21-86 2-70 (365)
14 3h05_A Uncharacterized protein 99.6 1.1E-16 3.7E-21 109.7 5.0 58 22-86 3-60 (177)
15 1o6b_A Phosphopantetheine aden 99.6 7.6E-16 2.6E-20 103.1 8.5 59 21-86 2-60 (169)
16 1f9a_A Hypothetical protein MJ 99.6 5.5E-16 1.9E-20 104.2 7.4 60 23-87 2-62 (168)
17 2qtr_A Nicotinate (nicotinamid 99.6 5.2E-16 1.8E-20 105.0 7.3 62 22-86 3-65 (189)
18 3hl4_A Choline-phosphate cytid 99.6 1.8E-16 6E-21 113.6 5.0 67 15-83 70-138 (236)
19 1od6_A PPAT, phosphopantethein 99.6 7.2E-16 2.5E-20 101.9 7.7 60 21-86 1-60 (160)
20 1kam_A Deamido-NAD(+), nicotin 99.6 1.1E-15 3.6E-20 104.6 8.0 64 20-86 5-70 (194)
21 3elb_A Ethanolamine-phosphate 99.6 2.9E-16 9.8E-21 117.2 5.5 67 16-83 193-262 (341)
22 1yum_A 'probable nicotinate-nu 99.6 2.4E-15 8.2E-20 107.0 8.9 62 21-86 23-85 (242)
23 1k4m_A NAMN adenylyltransferas 99.6 2.8E-15 9.5E-20 103.9 8.5 60 23-86 4-65 (213)
24 2h29_A Probable nicotinate-nuc 99.6 2.4E-15 8.2E-20 102.5 7.7 63 21-86 2-65 (189)
25 3glv_A Lipopolysaccharide core 99.6 7.8E-16 2.7E-20 101.5 4.3 62 20-83 1-62 (143)
26 1ej2_A Nicotinamide mononucleo 99.6 4.1E-15 1.4E-19 101.0 7.4 60 22-86 4-64 (181)
27 3elb_A Ethanolamine-phosphate 99.6 3.9E-15 1.3E-19 111.1 6.1 63 18-83 4-67 (341)
28 2qjo_A Bifunctional NMN adenyl 99.5 5.2E-15 1.8E-19 106.7 4.9 61 21-85 7-67 (341)
29 1nup_A FKSG76; NAD biosynthesi 99.5 7E-14 2.4E-18 99.6 7.5 63 19-86 4-73 (252)
30 1kqn_A Nmnat, nicotinamide mon 99.4 1.5E-13 5.2E-18 99.6 6.8 64 18-86 5-75 (279)
31 1jhd_A Sulfate adenylyltransfe 98.8 1.7E-08 6E-13 76.5 8.0 60 21-86 192-252 (396)
32 2x0k_A Riboflavin biosynthesis 98.8 1.8E-08 6E-13 74.8 7.3 62 22-83 16-83 (338)
33 1v47_A ATP sulfurylase; produc 98.7 3.7E-08 1.3E-12 73.5 8.2 58 22-86 156-213 (349)
34 1mrz_A Riboflavin kinase/FMN a 98.7 2.4E-08 8E-13 73.0 5.4 59 24-83 2-65 (293)
35 2ejc_A Pantoate--beta-alanine 98.6 7.5E-08 2.6E-12 70.2 7.2 60 22-83 23-84 (280)
36 3gmi_A UPF0348 protein MJ0951; 98.4 1.5E-06 5.2E-11 65.1 8.1 61 19-84 50-112 (357)
37 3op1_A Macrolide-efflux protei 98.3 1.8E-06 6E-11 63.6 7.0 64 21-84 20-91 (308)
38 1v8f_A Pantoate-beta-alanine l 97.4 0.00072 2.5E-08 49.1 8.1 57 23-83 21-79 (276)
39 1r6x_A ATP:sulfate adenylyltra 97.0 0.0026 8.8E-08 48.2 7.8 59 22-86 188-246 (395)
40 1g8f_A Sulfate adenylyltransfe 97.0 0.0037 1.3E-07 48.5 8.7 59 22-86 189-247 (511)
41 3ag6_A Pantothenate synthetase 97.0 0.0043 1.5E-07 45.2 8.2 59 22-84 24-86 (283)
42 3cov_A Pantothenate synthetase 96.8 0.002 6.7E-08 47.4 5.1 59 24-83 35-96 (301)
43 3uk2_A Pantothenate synthetase 96.6 0.0044 1.5E-07 45.2 6.0 59 24-83 24-84 (283)
44 2gks_A Bifunctional SAT/APS ki 96.6 0.0077 2.6E-07 46.8 7.4 59 22-86 164-222 (546)
45 3q12_A Pantoate--beta-alanine 96.5 0.0033 1.1E-07 46.0 4.8 36 21-60 25-62 (287)
46 3inn_A Pantothenate synthetase 96.4 0.022 7.4E-07 42.1 8.8 58 22-83 44-105 (314)
47 1m8p_A Sulfate adenylyltransfe 96.3 0.0081 2.8E-07 47.0 6.4 59 22-86 191-249 (573)
48 3n8h_A Pantothenate synthetase 94.7 0.049 1.7E-06 39.4 4.9 34 26-60 28-61 (264)
49 3cr8_A Sulfate adenylyltranfer 94.7 0.15 5.1E-06 39.7 8.0 58 22-86 165-222 (552)
50 3mxt_A Pantothenate synthetase 93.7 0.058 2E-06 39.3 3.7 30 29-60 32-61 (285)
51 1x6v_B Bifunctional 3'-phospho 93.0 0.45 1.6E-05 37.8 8.0 59 22-86 413-477 (630)
52 4dlp_A Aminoacyl-tRNA syntheta 49.0 10 0.00035 28.8 2.5 19 22-40 26-47 (536)
53 1jil_A Tyrrs, tyrosyl-tRNA syn 45.6 92 0.0031 23.2 7.8 56 29-84 42-103 (420)
54 2ts1_A Tyrosyl-tRNA synthetase 40.6 1.1E+02 0.0038 22.8 7.1 56 29-84 40-101 (419)
55 3kfl_A Methionyl-tRNA syntheta 40.3 16 0.00053 28.1 2.4 19 21-39 26-47 (564)
56 3c8z_A Cysteinyl-tRNA syntheta 39.9 18 0.00063 26.6 2.6 17 23-39 41-59 (414)
57 1yi8_B Tryptophanyl-tRNA synth 39.2 21 0.00072 26.1 2.8 27 33-59 35-63 (351)
58 2d5b_A Methionyl-tRNA syntheta 39.2 16 0.00054 27.3 2.2 17 23-39 5-24 (500)
59 2cya_A Tyrosyl-tRNA synthetase 39.0 36 0.0012 24.9 4.1 28 32-59 47-76 (364)
60 2dlc_X Tyrosyl-tRNA synthetase 38.7 31 0.0011 25.5 3.7 29 30-58 46-79 (394)
61 1li5_A Cysrs, cysteinyl-tRNA s 34.5 27 0.00093 26.2 2.9 17 23-39 24-42 (461)
62 2pid_A Tyrosyl-tRNA synthetase 34.2 1.3E+02 0.0045 21.8 7.8 55 29-83 56-116 (356)
63 3h99_A Methionyl-tRNA syntheta 25.8 39 0.0013 25.7 2.4 20 21-40 18-40 (560)
64 2jan_A Tyrosyl-tRNA synthetase 25.4 1.1E+02 0.0038 23.0 4.8 51 29-82 42-100 (432)
65 1n3l_A Tyrosyl-tRNA synthetase 23.6 90 0.0031 22.8 4.0 27 32-58 47-75 (372)
66 1iq0_A Arginyl-tRNA synthetase 23.0 27 0.00093 27.0 1.1 16 24-39 107-124 (592)
67 2f9f_A First mannosyl transfer 22.9 1.4E+02 0.0047 18.2 4.5 29 18-47 20-48 (177)
68 2csx_A Methionyl-tRNA syntheta 22.8 40 0.0014 25.1 2.0 17 23-39 7-26 (497)
69 1jg7_A BGT, DNA beta-glucosylt 22.5 44 0.0015 24.1 2.0 17 16-32 176-192 (351)
70 3foc_A Tryptophanyl-tRNA synth 22.2 1.2E+02 0.0042 23.0 4.6 31 29-59 101-134 (451)
71 3djh_A Macrophage migration in 21.6 38 0.0013 20.2 1.3 11 23-33 46-56 (114)
72 3cex_A Uncharacterized protein 20.5 39 0.0013 21.3 1.3 12 34-45 158-169 (172)
73 2yxn_A Tyrosyl-tRNA synthetase 20.3 2.4E+02 0.0081 20.0 7.8 53 29-81 43-101 (322)
74 2zue_A Arginyl-tRNA synthetase 20.1 34 0.0012 26.8 1.1 10 30-39 131-140 (629)
No 1
>3do8_A Phosphopantetheine adenylyltransferase; protein with unknown function, structural genomics, MCSG, PSI-2, protein structure initiative; 1.60A {Archaeoglobus fulgidus}
Probab=99.78 E-value=1.6e-19 Score=120.84 Aligned_cols=61 Identities=33% Similarity=0.633 Sum_probs=54.6
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCcccccCCCCCCCCHHHHHHHHHHHH
Q 034677 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYI 85 (87)
Q Consensus 23 ~v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~~l 85 (87)
++++||||||+|.||+.++++|++++.|+|+|+|+++++++++ ..++.|+++|++|++.++
T Consensus 2 ~~i~gGtFDPiH~GHl~l~~~a~~~~~d~viv~v~~~~~~~k~--~~~~~~~~~R~~ml~~a~ 62 (148)
T 3do8_A 2 KVALGGTFEPLHEGHKKLIDVAIKLGGRDITIGVTSDRMARAR--IRSVLPFAIRAENVKRYV 62 (148)
T ss_dssp CEEEEECCSSCCHHHHHHHHHHHHHHTTCEEEEEECHHHHHHH--SCCCSCHHHHHHHHHHHH
T ss_pred EEEEEeeCCCCCHHHHHHHHHHHHhCCCEEEEEECCCcccccc--CCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999999999658999999999876422 367999999999999998
No 2
>3nbk_A Phosphopantetheine adenylyltransferase; PPAT, PHP; HET: PNS; 1.58A {Mycobacterium tuberculosis} PDB: 3nba_A* 3pnb_A* 4e1a_A 3lcj_A 3rba_A* 1tfu_A* 3rff_A 3rhs_A* 3uc5_A*
Probab=99.75 E-value=2.8e-18 Score=118.31 Aligned_cols=62 Identities=26% Similarity=0.341 Sum_probs=54.4
Q ss_pred CCcccEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCcccccCCCCCCCCHHHHHHHHHHHHh
Q 034677 18 DNSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIK 86 (87)
Q Consensus 18 ~~~~~~v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~~l~ 86 (87)
.+.|+++++||||||+|+||+.++++|++++ |+|+|+|+.++ +| ++..|.++|++|++..++
T Consensus 18 ~~~mki~i~~GsFDPiH~GHl~ii~~A~~~~-D~Viv~v~~np---~K---~~~~s~eeR~~mv~~a~~ 79 (177)
T 3nbk_A 18 GSHMTGAVCPGSFDPVTLGHVDIFERAAAQF-DEVVVAILVNP---AK---TGMFDLDERIAMVKESTT 79 (177)
T ss_dssp --CCCEEEEEECCTTCCHHHHHHHHHHHHHS-SEEEEEECCCT---TS---CCSSCHHHHHHHHHHHCT
T ss_pred CCCCEEEEEEEeeCCCCHHHHHHHHHHHHHC-CEEEEEEcCCC---CC---CCCCCHHHHHHHHHHHhC
Confidence 4678999999999999999999999999999 89999999774 34 478999999999998765
No 3
>3nv7_A Phosphopantetheine adenylyltransferase; helicobacter pylori 26695 strain, mutant I4V/N76Y, phosphopa adenylyltransferase; 1.75A {Helicobacter pylori} PDB: 3otw_A*
Probab=99.74 E-value=4.4e-18 Score=115.04 Aligned_cols=59 Identities=27% Similarity=0.464 Sum_probs=52.5
Q ss_pred ccEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCcccccCCCCCCCCHHHHHHHHHHHHh
Q 034677 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIK 86 (87)
Q Consensus 21 ~~~v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~~l~ 86 (87)
|+++++||||||+|.||+.++++|++++ |+|+|++++++ +| .++.|.++|++|++..++
T Consensus 2 m~i~i~~GsFDPiH~GHl~ii~~A~~~~-D~viv~v~~~~---~K---~~~~~~~eR~~ml~~a~~ 60 (157)
T 3nv7_A 2 QKVGIYPGTFDPVTNGHIDIIHRSSELF-EKLIVAVAHSS---AK---NPMFSLDERLKMIQLATK 60 (157)
T ss_dssp -CEEEEEECCTTCCHHHHHHHHHHHTTS-SEEEEEEECCG---GG---CCSSCHHHHHHHHHHHHT
T ss_pred CEEEEEEEEcCCCCHHHHHHHHHHHHhC-CceEEEEccCC---CC---CCCCCHHHHHHHHHHHhc
Confidence 5789999999999999999999999999 89999998874 34 578999999999998775
No 4
>4f3r_A Phosphopantetheine adenylyltransferase; phosphopantetheine adenylyltranferase; 2.25A {Coxiella burnetii}
Probab=99.73 E-value=5.7e-18 Score=114.83 Aligned_cols=59 Identities=22% Similarity=0.373 Sum_probs=49.8
Q ss_pred ccEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCcccccCCCCCCCCHHHHHHHHHHHHh
Q 034677 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIK 86 (87)
Q Consensus 21 ~~~v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~~l~ 86 (87)
|+++++||||||+|.||+.++++|++++ |+|+|+|+.++ .| .++.|.++|++|++..++
T Consensus 5 m~i~i~~GsFDPiH~GHl~li~~A~~~~-d~viv~v~~~~---~K---~~~~~~~~R~~m~~~~~~ 63 (162)
T 4f3r_A 5 KPIAIYPGTFDPLTNGHVDIIERALPLF-NKIIVACAPTS---RK---DPHLKLEERVNLIADVLT 63 (162)
T ss_dssp CCEEEEEECCTTCCHHHHHHHHHHGGGC-SEEEEEECCC------------CCHHHHHHHHHHHCC
T ss_pred eEEEEEEEEcCCCCHHHHHHHHHHHHHC-CcEEEEEecCC---cc---CCCCCHHHHHHHHHHhhC
Confidence 6899999999999999999999999999 89999999764 33 578999999999998764
No 5
>3nd5_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A BIO pathway; 2.30A {Enterococcus faecalis} SCOP: c.26.1.0 PDB: 3nd6_A* 3nd7_A*
Probab=99.72 E-value=8.1e-18 Score=114.99 Aligned_cols=59 Identities=25% Similarity=0.429 Sum_probs=49.8
Q ss_pred ccEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCcccccCCCCCCCCHHHHHHHHHHHHh
Q 034677 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIK 86 (87)
Q Consensus 21 ~~~v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~~l~ 86 (87)
|+++++||||||+|.||+.++++|++++ |+|+|+++.++ .| .+..|.++|++|++..++
T Consensus 2 m~i~i~~GsFDPiH~GHl~i~~~a~~~~-D~viv~v~~~~---~K---~~~~~~~~R~~ml~~a~~ 60 (171)
T 3nd5_A 2 RKIALFPGSFDPMTNGHLNLIERSAKLF-DEVIIGVFINT---SK---QTLFTPEEKKYLIEEATK 60 (171)
T ss_dssp CCEEEEEECCTTCCHHHHHHHHHHHTTC-SEEEEEEEC------------CCCHHHHHHHHHHHHT
T ss_pred CeEEEEEEEccccCHHHHHHHHHHHHHC-CCeEEEEecCC---CC---CCCCCHHHHHHHHHHHHc
Confidence 5789999999999999999999999999 89999997653 34 478999999999998875
No 6
>3f3m_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A BIO pathway, coenzyme A biosynthesis, nucleotidyltransferase; HET: PPS; 2.40A {Staphylococcus aureus} SCOP: c.26.1.0
Probab=99.71 E-value=1.7e-17 Score=113.08 Aligned_cols=59 Identities=31% Similarity=0.384 Sum_probs=50.5
Q ss_pred ccEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCcccccCCCCCCCCHHHHHHHHHHHHh
Q 034677 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIK 86 (87)
Q Consensus 21 ~~~v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~~l~ 86 (87)
.+++++||||||+|.||+.++++|++++ |+|+|+|+.++ .| .++.|.++|++|++..++
T Consensus 3 ~ki~i~~GsFDPiH~GHl~i~~~a~~~~-d~viv~v~~~p---~K---~~~~~~~~R~~ml~~a~~ 61 (168)
T 3f3m_A 3 HTIAVIPGSFDPITYGHLDIIERSTDRF-DEIHVCVLKNS---KK---EGTFSLEERMDLIEQSVK 61 (168)
T ss_dssp CCEEEEEECCTTCCHHHHHHHHHHGGGS-SEEEEEECC-----------CCSCHHHHHHHHHHHTT
T ss_pred ceEEEEEEEcCcCCHHHHHHHHHHHHhC-CEEEEEEcCCC---CC---CCCCCHHHHHHhHHHHhc
Confidence 4789999999999999999999999999 89999999764 33 578999999999998765
No 7
>1vlh_A Phosphopantetheine adenylyltransferase; TM0741, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: PNS; 2.20A {Thermotoga maritima} SCOP: c.26.1.3
Probab=99.71 E-value=2.3e-17 Score=112.02 Aligned_cols=61 Identities=26% Similarity=0.397 Sum_probs=52.5
Q ss_pred CcccEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCcccccCCCCCCCCHHHHHHHHHHHHh
Q 034677 19 NSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIK 86 (87)
Q Consensus 19 ~~~~~v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~~l~ 86 (87)
....++++||||||+|.||+.++++|++++ |+|+|+|++++. | ++..|.++|++|++..++
T Consensus 10 ~~~~i~i~~GsFdP~H~GHl~l~~~A~~~~-D~viv~v~~~~~---k---k~~~~~~~R~~ml~~a~~ 70 (173)
T 1vlh_A 10 HHHMKAVYPGSFDPITLGHVDIIKRALSIF-DELVVLVTENPR---K---KCMFTLEERKKLIEEVLS 70 (173)
T ss_dssp ---CEEEEEECCTTCCHHHHHHHHHHHTTC-SEEEEEEECCTT---C---CCSSCHHHHHHHHHHHTT
T ss_pred ccceEEEEEEEECcCcHHHHHHHHHHHHHC-CEEEEEEeCCCC---C---CCCCCHHHHHHHHHHHhc
Confidence 445689999999999999999999999999 899999999753 3 368999999999998765
No 8
>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B
Probab=99.68 E-value=4.1e-17 Score=118.57 Aligned_cols=62 Identities=16% Similarity=0.274 Sum_probs=53.8
Q ss_pred ccEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCcccccCCCCCCCCHHHHHHHHHHHHh
Q 034677 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIK 86 (87)
Q Consensus 21 ~~~v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~~l~ 86 (87)
++++++||||||+|+||+.++++|++++ |+++|+|.++++.+.+ .+..|+++|++||+..++
T Consensus 7 ~~~~i~~GtFdP~h~GHl~~~~~a~~~~-d~~~~~v~~~~~~~~~---~~~~~~~~R~~m~~~~~~ 68 (352)
T 2qjt_B 7 YDISVFIGRFQPFHKGHLHNIIIALQNS-KKVIINIGSCFNTPNI---KNPFSFEQRKQMIESDLQ 68 (352)
T ss_dssp EEEEEEEECCTTCCHHHHHHHHHHHHSE-EEEEEEEEEESCCCCS---SSCSCHHHHHHHHHHHHH
T ss_pred ccEEEEEEecCCCChHHHHHHHHHHHhC-CcEEEEECCCCCCccc---CCCCCHHHHHHHHHHHhc
Confidence 5789999999999999999999999998 7999999987654433 346899999999999873
No 9
>3k9w_A Phosphopantetheine adenylyltransferase; niaid, ssgcid, seattle structural genomics center for infect disease, coenzyme A, COA; HET: 4PS ADE PG4; 1.60A {Burkholderia pseudomallei} PDB: 3ikz_A* 3pxu_A*
Probab=99.68 E-value=1.6e-16 Score=110.00 Aligned_cols=60 Identities=30% Similarity=0.491 Sum_probs=53.6
Q ss_pred cccEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCcccccCCCCCCCCHHHHHHHHHHHHh
Q 034677 20 SYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIK 86 (87)
Q Consensus 20 ~~~~v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~~l~ 86 (87)
.|++++++|||||+|.||+.++++|++++ |+++|+|++++ .| .++.|.++|++|++..++
T Consensus 21 ~mki~v~~GsFDpiH~GHl~li~~A~~~~-d~viv~v~~~p---~K---~~l~s~eeR~~ml~~~~~ 80 (187)
T 3k9w_A 21 SMVVAVYPGTFDPLTRGHEDLVRRASSIF-DTLVVGVADSR---AK---KPFFSLEERLKIANEVLG 80 (187)
T ss_dssp CCCEEEEEECCTTCCHHHHHHHHHHHHHS-SEEEEEEECCG---GG---CCSSCHHHHHHHHHHHHT
T ss_pred CcEEEEEEEeCCcCcHHHHHHHHHHHHHC-CcEEEEEecCC---cc---CCCCCHHHHHHHHHHHhc
Confidence 37899999999999999999999999999 89999998863 33 579999999999999764
No 10
>1qjc_A Phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.64A {Escherichia coli} SCOP: c.26.1.3 PDB: 1h1t_A* 1gn8_A* 1b6t_A* 3l92_A* 3l93_A
Probab=99.67 E-value=1.3e-16 Score=105.17 Aligned_cols=59 Identities=19% Similarity=0.411 Sum_probs=51.3
Q ss_pred ccEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCcccccCCCCCCCCHHHHHHHHHHHHh
Q 034677 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIK 86 (87)
Q Consensus 21 ~~~v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~~l~ 86 (87)
++++++||||||+|.||+.++++|++.+ |+++++++.++ +| .++.|+++|++|++..++
T Consensus 1 ~~i~i~~GsFDpvH~GH~~l~~~a~~~~-d~v~v~~~~~p---~k---~~~~~~~~R~~ml~~a~~ 59 (158)
T 1qjc_A 1 QKRAIYPGTFDPITNGHIDIVTRATQMF-DHVILAIAASP---SK---KPMFTLEERVALAQQATA 59 (158)
T ss_dssp -CEEEEEECCTTCCHHHHHHHHHHHTTS-SEEEEEEESCC---SS---CCSSCHHHHHHHHHHHTT
T ss_pred CCEEEEEecCCCCCHHHHHHHHHHHHhC-CEEEEEECCCC---CC---CCCCCHHHHHHHHHHHHh
Confidence 4689999999999999999999999998 79999998874 23 358999999999998664
No 11
>2b7l_A Glycerol-3-phosphate cytidylyltransferase; rossmann fold; 3.00A {Staphylococcus aureus}
Probab=99.66 E-value=1.1e-16 Score=103.46 Aligned_cols=61 Identities=25% Similarity=0.358 Sum_probs=51.7
Q ss_pred ccEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCcccccCCCCCCCCHHHHHHHHHH
Q 034677 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEA 83 (87)
Q Consensus 21 ~~~v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~ 83 (87)
|++++++|+|||+|.||+.++++|++.+ ++++|+++.++...++. +.++.|.++|.+|++.
T Consensus 1 m~~~~~~G~FDp~H~GH~~li~~a~~~~-~~~~v~v~~~~~~~~~~-~~~l~~~~eR~~~l~~ 61 (132)
T 2b7l_A 1 MKRVITYGTYDLLHYGHIELLRRAREMG-DYLIVALSTDEFNQIKH-KKSYYDYEQRKMMLES 61 (132)
T ss_dssp CCEEEEEECCCSCCHHHHHHHHHHHHTS-SEEEEEEECHHHHHHTT-CCCSSCHHHHHHHHHT
T ss_pred CeEEEEeeecCcCCHHHHHHHHHHHHhC-CcEEEEEECCHHHhccC-CCCCCCHHHHHHHHHh
Confidence 5789999999999999999999999998 78999999986432222 2579999999999984
No 12
>1coz_A Protein (glycerol-3-phosphate cytidylyltransferase); HET: CTP; 2.00A {Bacillus subtilis} SCOP: c.26.1.2 PDB: 1n1d_A*
Probab=99.65 E-value=6.9e-17 Score=103.90 Aligned_cols=61 Identities=30% Similarity=0.389 Sum_probs=51.5
Q ss_pred ccEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCcccccCCCCCCCCHHHHHHHHHH
Q 034677 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEA 83 (87)
Q Consensus 21 ~~~v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~ 83 (87)
|++++++|+|||+|.||+.++++|++.+ ++++|+++.++..++|. +.++.|.++|.+|++.
T Consensus 1 m~~~~~~G~FDp~H~GH~~li~~a~~~~-d~~~v~v~~~~~~~~~~-~~~l~~~~eR~~~l~~ 61 (129)
T 1coz_A 1 MKKVITYGTFDLLHWGHIKLLERAKQLG-DYLVVAISTDEFNLQKQ-KKAYHSYEHRKLILET 61 (129)
T ss_dssp CCEEEEEECCCSCCHHHHHHHHHHHTTS-SEEEEEEECHHHHHHHT-CCCSSCHHHHHHHHTT
T ss_pred CcEEEEEEeCCCCCHHHHHHHHHHHHhC-CCeEEEEECCHHHhcCC-CCCCCCHHHHHHHHHh
Confidence 5789999999999999999999999998 78999999986322232 2579999999999984
No 13
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.65 E-value=1.3e-16 Score=117.36 Aligned_cols=64 Identities=22% Similarity=0.349 Sum_probs=53.5
Q ss_pred ccEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCcc-----cccCCCCCCCCHHHHHHHHHHHHh
Q 034677 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPML-----TNKQFAELIQPVDERMRNVEAYIK 86 (87)
Q Consensus 21 ~~~v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~~-----~~k~~~~~i~~~~~R~~~v~~~l~ 86 (87)
++++++||||||+|.||+.++++|++++ |+|+|+|+++++. +.++.+. ..|+++|++||+..++
T Consensus 2 ~~~~i~~GtFdP~h~GHl~~~~~a~~~~-d~v~v~~~~~~~~~~~~~~~~~~~~-~~~~~~R~~m~~~~~~ 70 (365)
T 1lw7_A 2 KKVGVIFGKFYPVHTGHINMIYEAFSKV-DELHVIVCSDTVRDLKLFYDSKMKR-MPTVQDRLRWMQQIFK 70 (365)
T ss_dssp CCEEEEEECCSSCCHHHHHHHHHHHTTC-SEEEEEEEECHHHHHHHHHHTTCSS-CCCHHHHHHHHHHHTS
T ss_pred CcEEEEEEeeCCCCHHHHHHHHHHHHHC-CEEEEEECCCCccccccccccccCC-CCCHHHHHHHHHHHhh
Confidence 4689999999999999999999999998 8999999998763 2111013 4999999999998875
No 14
>3h05_A Uncharacterized protein VPA0413; nucleotidylyl, transferase, MCSG, midwest center for structu genomics, PSI; 1.65A {Vibrio parahaemolyticus}
Probab=99.65 E-value=1.1e-16 Score=109.66 Aligned_cols=58 Identities=19% Similarity=0.244 Sum_probs=46.9
Q ss_pred cEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCcccccCCCCCCCCHHHHHHHHHHHHh
Q 034677 22 GAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIK 86 (87)
Q Consensus 22 ~~v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~~l~ 86 (87)
+++++||||||+|.||+.+++ |++.+ |+|+++|+.+.+ .| ++..|.++|++|++.+++
T Consensus 3 ~igi~gGsFdPih~GHl~i~~-a~~~~-d~v~~~p~~~~~--~k---~~~~~~~~R~~m~~~a~~ 60 (177)
T 3h05_A 3 KIAIFGSAFNPPSLGHKSVIE-SLSHF-DLVLLEPSIAHA--WG---KNMLDYPIRCKLVDAFIK 60 (177)
T ss_dssp EEEEEEECCSSCCHHHHHHHT-TCTTS-SEEEEEECC------------CCCHHHHHHHHHHHHH
T ss_pred EEEEEEeccchhhHHHHHHHH-HHHHC-CEEEEEECCCCC--CC---CCCCCHHHHHHHHHHHHh
Confidence 689999999999999999998 77777 899999988633 22 458999999999999875
No 15
>1o6b_A Phosphopantetheine adenylyltransferase; structural genomics; HET: ADP; 2.20A {Bacillus subtilis} SCOP: c.26.1.3
Probab=99.64 E-value=7.6e-16 Score=103.06 Aligned_cols=59 Identities=25% Similarity=0.345 Sum_probs=50.9
Q ss_pred ccEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCcccccCCCCCCCCHHHHHHHHHHHHh
Q 034677 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIK 86 (87)
Q Consensus 21 ~~~v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~~l~ 86 (87)
++++++||||||+|.||+.++++|++.+ |+++|+++.+ + .| .++.|.++|++|++..++
T Consensus 2 ~~i~i~~GsFDpvH~GH~~li~~a~~~~-d~v~v~~~~~-p--~k---~~l~~~~~R~~ml~~a~~ 60 (169)
T 1o6b_A 2 ASIAVCPGSFDPVTYGHLDIIKRGAHIF-EQVYVCVLNN-S--SK---KPLFSVEERCELLREVTK 60 (169)
T ss_dssp CCEEEEEECCTTCCHHHHHHHHHHHHHS-SEEEEEECCC-C--SS---CCSSCHHHHHHHHHHHHT
T ss_pred CcEEEEEEeeCCCCHHHHHHHHHHHHhC-CEEEEEECCC-C--cc---CCCCCHHHHHHHHHHHHh
Confidence 3689999999999999999999999999 8999988855 3 23 358899999999998764
No 16
>1f9a_A Hypothetical protein MJ0541; alpha/beta, transferase, structural genomics; HET: ATP; 2.00A {Methanocaldococcus jannaschii} SCOP: c.26.1.3
Probab=99.63 E-value=5.5e-16 Score=104.21 Aligned_cols=60 Identities=27% Similarity=0.341 Sum_probs=50.2
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEE-cCCCcccccCCCCCCCCHHHHHHHHHHHHhC
Q 034677 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGV-CDGPMLTNKQFAELIQPVDERMRNVEAYIKG 87 (87)
Q Consensus 23 ~v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv-~~d~~~~~k~~~~~i~~~~~R~~~v~~~l~~ 87 (87)
++++||||||+|.||+.++++|++.+ |+++|++ +.+++.+ + ....|.++|++|++..+++
T Consensus 2 i~i~~GsFdp~H~GH~~l~~~a~~~~-d~v~v~v~~~~~p~~--~--~~~~~~~~R~~m~~~~~~~ 62 (168)
T 1f9a_A 2 RGFIIGRFQPFHKGHLEVIKKIAEEV-DEIIIGIGSAQKSHT--L--ENPFTAGERILMITQSLKD 62 (168)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHTTTC-SEEEEEECSTTCCSS--S--SCCSCHHHHHHHHHHHHTT
T ss_pred EEEEEEecCCcCHHHHHHHHHHHHhC-CeEEEEEcCCCCCCC--C--CCCCCHHHHHHHHHHHHhc
Confidence 78999999999999999999999998 7999987 6665432 2 2356999999999998763
No 17
>2qtr_A Nicotinate (nicotinamide) nucleotide adenylyltran; NAD, nucleotidyltransferase, pyridine nucleotide biosynthesi transferase; HET: NXX; 1.70A {Bacillus anthracis} PDB: 3dv2_A 3mla_A* 3hfj_A* 3mlb_A* 3mmx_A* 3e27_A* 2qtn_A* 2qtm_A*
Probab=99.63 E-value=5.2e-16 Score=105.05 Aligned_cols=62 Identities=23% Similarity=0.283 Sum_probs=52.2
Q ss_pred cEEEEcccCCCCCHHHHHHHHHHHHHhc-CeEEEEEcCCCcccccCCCCCCCCHHHHHHHHHHHHh
Q 034677 22 GAVVLGGTFDRLHDGHRLFLKASAELAR-DRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIK 86 (87)
Q Consensus 22 ~~v~~gGtFDplH~GHl~ll~~a~~~~~-d~vivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~~l~ 86 (87)
+++++||||||+|.||+.++++|++.++ +.+++.++.+++.+. ..++.|+++|++|++..++
T Consensus 3 ~i~i~~GsFDPvH~GH~~li~~a~~~~~~d~v~~~~~~~~~~k~---~~~~~~~~~R~~ml~~~~~ 65 (189)
T 2qtr_A 3 KIGIIGGTFDPPHYGHLLIANEVYHALNLEEVWFLPNQIPPHKQ---GRNITSVESRLQMLELATE 65 (189)
T ss_dssp EEEEEEECCSSCCHHHHC-CHHHHHHTTCSEEEEEECSSCTTCT---TSCCCCHHHHHHHHHHHHT
T ss_pred eEEEEecCcccccHHHHHHHHHHHHHcCCCEEEEEECCCCCCcc---CCCCCCHHHHHHHHHHHhC
Confidence 6899999999999999999999999873 789999998776532 1458999999999998764
No 18
>3hl4_A Choline-phosphate cytidylyltransferase A; rossmann fold, phospholipid synthesis, phosphatidylcholine, phosphocholine, CTP, CDP-choline; HET: CDC; 2.20A {Rattus norvegicus}
Probab=99.63 E-value=1.8e-16 Score=113.60 Aligned_cols=67 Identities=27% Similarity=0.356 Sum_probs=57.9
Q ss_pred CCCCCcccEEEEcccCCCCCHHHHHHHHHHHHHh-cCeEEEEEcCCCccc-ccCCCCCCCCHHHHHHHHHH
Q 034677 15 ISPDNSYGAVVLGGTFDRLHDGHRLFLKASAELA-RDRIVVGVCDGPMLT-NKQFAELIQPVDERMRNVEA 83 (87)
Q Consensus 15 ~~~~~~~~~v~~gGtFDplH~GHl~ll~~a~~~~-~d~vivgv~~d~~~~-~k~~~~~i~~~~~R~~~v~~ 83 (87)
..|..++++|+++|||||+|.||+.+|++|++++ +|+|+|||++|+.+. +|+ .|+++.++|+++|+.
T Consensus 70 ~~~~~~~~~V~~~GtFD~~H~GHl~iL~rAk~lf~gD~LIVgV~~D~~v~~~Kg--~pi~s~eER~e~v~~ 138 (236)
T 3hl4_A 70 GTPCERPVRVYADGIFDLFHSGHARALMQAKNLFPNTYLIVGVCSDELTHNFKG--FTVMNENERYDAVQH 138 (236)
T ss_dssp CCCTTSCEEEEEEECCTTCCHHHHHHHHHHHTSSSSEEEEEEECCHHHHHHHTC--CCSSCHHHHHHHHHT
T ss_pred CCCCCCCeEEEEeccCCCCCHHHHHHHHHHHHhcCCCeEEEEEcccHHHhhcCC--CCCCCHHHHHHHHHH
Confidence 3556788899999999999999999999999996 479999999997653 343 689999999999985
No 19
>1od6_A PPAT, phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.5A {Thermus thermophilus} SCOP: c.26.1.3
Probab=99.63 E-value=7.2e-16 Score=101.95 Aligned_cols=60 Identities=25% Similarity=0.468 Sum_probs=49.1
Q ss_pred ccEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCcccccCCCCCCCCHHHHHHHHHHHHh
Q 034677 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIK 86 (87)
Q Consensus 21 ~~~v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~~l~ 86 (87)
|+ +++||||||+|.||+.++++|++.+ |+++++++.++ . |. ..++.|+++|++|++..++
T Consensus 1 m~-~v~~GsFdp~H~GH~~l~~~a~~~~-d~v~v~~~~~p-~--k~-~~~~~~~~~R~~ml~~a~~ 60 (160)
T 1od6_A 1 MH-VVYPGSFDPLTNGHLDVIQRASRLF-EKVTVAVLENP-S--KR-GQYLFSAEERLAIIREATA 60 (160)
T ss_dssp CE-EEEEECCTTCCHHHHHHHHHHHHHS-SEEEEEEECC---------CCSSCHHHHHHHHHHHTT
T ss_pred Ce-EEEEeeeCCCCHHHHHHHHHHHHHC-CEEEEEEcCCC-C--CC-CCCCCCHHHHHHHHHHHhc
Confidence 34 8999999999999999999999999 78999998653 2 32 1358999999999998764
No 20
>1kam_A Deamido-NAD(+), nicotinate-nucleotide adenylyltransferase; rossman fold; 2.10A {Bacillus subtilis} SCOP: c.26.1.3 PDB: 1kaq_A*
Probab=99.62 E-value=1.1e-15 Score=104.61 Aligned_cols=64 Identities=25% Similarity=0.229 Sum_probs=48.8
Q ss_pred cc-cEEEEcccCCCCCHHHHHHHHHHHHHhc-CeEEEEEcCCCcccccCCCCCCCCHHHHHHHHHHHHh
Q 034677 20 SY-GAVVLGGTFDRLHDGHRLFLKASAELAR-DRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIK 86 (87)
Q Consensus 20 ~~-~~v~~gGtFDplH~GHl~ll~~a~~~~~-d~vivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~~l~ 86 (87)
+| +++++||||||+|.||+.++++|++.++ +.++++++.+++.+. ..++.++++|++|++..++
T Consensus 5 ~m~~~~v~~GsFdp~H~GH~~l~~~a~~~~~~d~v~~~~~~~~~~k~---~~~~~~~~~R~~ml~~a~~ 70 (194)
T 1kam_A 5 GSKKIGIFGGTFDPPHNGHLLMANEVLYQAGLDEIWFMPNQIPPHKQ---NEDYTDSFHRVEMLKLAIQ 70 (194)
T ss_dssp -CCEEEEEEECCSSCCHHHHHHHHHHHHHTTCSEEEEEECCCC------------CHHHHHHHHHHHHT
T ss_pred CCcEEEEEEeccccccHHHHHHHHHHHHHhCCCEEEEEECCCCCCcC---CcCCCCHHHHHHHHHHHHc
Confidence 35 6899999999999999999999999873 789999987765431 1458999999999998765
No 21
>3elb_A Ethanolamine-phosphate cytidylyltransferase; kennedy pathway, CMP, CTP, phosphoethanolamine, cytidylyltra SGC, structural genomics consortium; HET: C5P; 2.00A {Homo sapiens}
Probab=99.62 E-value=2.9e-16 Score=117.21 Aligned_cols=67 Identities=28% Similarity=0.349 Sum_probs=57.8
Q ss_pred CCCCcccEEEEcccCCCCCHHHHHHHHHHHHHhcC--eEEEEEcCCCccc-ccCCCCCCCCHHHHHHHHHH
Q 034677 16 SPDNSYGAVVLGGTFDRLHDGHRLFLKASAELARD--RIVVGVCDGPMLT-NKQFAELIQPVDERMRNVEA 83 (87)
Q Consensus 16 ~~~~~~~~v~~gGtFDplH~GHl~ll~~a~~~~~d--~vivgv~~d~~~~-~k~~~~~i~~~~~R~~~v~~ 83 (87)
.|..+.++|+++|||||+|.||+.+|++|++++ | +|+|||++|+.+. .|+...|++|.++|.++|++
T Consensus 193 ~~~~~~~iv~~~GsFD~~h~GHl~~L~rA~~l~-D~~~LiVgV~~d~~v~~~Kg~~~pi~~~~ER~~~v~~ 262 (341)
T 3elb_A 193 EPQPGETVIYVAGAFDLFHIGHVDFLEKVHRLA-ERPYIIAGLHFDQEVNHYKGKNYPIMNLHERTLSVLA 262 (341)
T ss_dssp CCCTTCEEEEEEECCTTCCHHHHHHHHHHHTTS-SSEEEEEEEECHHHHHHHHCTTCCSSCHHHHHHHHHT
T ss_pred CCCCCCEEEEEecccCCCCHHHHHHHHHHHHhC-CCCEEEEEEccCHhhHhhcCCCCCCCCHHHHHHHHHH
Confidence 445667899999999999999999999999999 8 9999999997653 34433699999999999985
No 22
>1yum_A 'probable nicotinate-nucleotide adenylyltransferase; alpha/beta domain; HET: CIT NCN; 1.70A {Pseudomonas aeruginosa} PDB: 1yul_A* 1yun_A*
Probab=99.61 E-value=2.4e-15 Score=106.98 Aligned_cols=62 Identities=24% Similarity=0.223 Sum_probs=53.7
Q ss_pred ccEEEEcccCCCCCHHHHHHHHHHHHHhc-CeEEEEEcCCCcccccCCCCCCCCHHHHHHHHHHHHh
Q 034677 21 YGAVVLGGTFDRLHDGHRLFLKASAELAR-DRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIK 86 (87)
Q Consensus 21 ~~~v~~gGtFDplH~GHl~ll~~a~~~~~-d~vivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~~l~ 86 (87)
++++++||||||+|.||+.++++|++.++ |+|+|+|+.+++.+ . .++.++++|++|++..++
T Consensus 23 ~~i~i~~GsFdPiH~GHl~li~~a~~~~~ld~v~v~~~~~~p~K--~--~~~~~~~~R~~ml~~a~~ 85 (242)
T 1yum_A 23 KRIGLFGGTFDPVHIGHMRSAVEMAEQFALDELRLLPNARPPHR--E--TPQVSAAQRLAMVERAVA 85 (242)
T ss_dssp CEEEEEEECCTTCCHHHHHHHHHHHHHHTCSEEEEEECCCCGGG--S--CTTCCHHHHHHHHHHHHT
T ss_pred ceEEEEEeeCcHhhHHHHHHHHHHHHHcCCCEEEEEEcCCCCCC--C--CCCCCHHHHHHHHHHHhc
Confidence 46899999999999999999999999974 79999999987543 2 458899999999998764
No 23
>1k4m_A NAMN adenylyltransferase; nucleotidyltransferase; HET: NAD CIT; 1.90A {Escherichia coli} SCOP: c.26.1.3 PDB: 1k4k_A*
Probab=99.60 E-value=2.8e-15 Score=103.91 Aligned_cols=60 Identities=25% Similarity=0.281 Sum_probs=51.7
Q ss_pred E-EEEcccCCCCCHHHHHHHHHHHHHhc-CeEEEEEcCCCcccccCCCCCCCCHHHHHHHHHHHHh
Q 034677 23 A-VVLGGTFDRLHDGHRLFLKASAELAR-DRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIK 86 (87)
Q Consensus 23 ~-v~~gGtFDplH~GHl~ll~~a~~~~~-d~vivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~~l~ 86 (87)
+ +++||||||+|.||+.++++|.+.++ |++++.++.+++.+. .++.++++|++|++..++
T Consensus 4 i~~i~~GsFdPiH~GH~~l~~~a~~~~~~d~v~~~~~~~~~~k~----~~~~~~~~R~~ml~~a~~ 65 (213)
T 1k4m_A 4 LQALFGGTFDPVHYGHLKPVETLANLIGLTRVTIIPNNVPPHRP----QPEANSVQRKHMLELAIA 65 (213)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHHHHTCSCEEEEECSSCTTSC----CCSSCHHHHHHHHHHHHT
T ss_pred EEEEEEeCcCCCCHHHHHHHHHHHHHcCCCEEEEEECCCCCCCC----CCCCCHHHHHHHHHHHhc
Confidence 6 99999999999999999999999973 789999988766432 358999999999998765
No 24
>2h29_A Probable nicotinate-nucleotide adenylyltransferase; NADD, namnat, nmnat; HET: DND; 2.00A {Staphylococcus aureus} PDB: 2h2a_A*
Probab=99.60 E-value=2.4e-15 Score=102.47 Aligned_cols=63 Identities=17% Similarity=0.212 Sum_probs=53.0
Q ss_pred ccEEEEcccCCCCCHHHHHHHHHHHHHhc-CeEEEEEcCCCcccccCCCCCCCCHHHHHHHHHHHHh
Q 034677 21 YGAVVLGGTFDRLHDGHRLFLKASAELAR-DRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIK 86 (87)
Q Consensus 21 ~~~v~~gGtFDplH~GHl~ll~~a~~~~~-d~vivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~~l~ 86 (87)
++++++||||||+|.||+.++++|++.++ +.+++.++.+++.+.+ .++.++++|++|++..++
T Consensus 2 ~~~~v~~GsFdp~H~GH~~l~~~a~~~~~~d~v~~~~~~~~~~k~~---~~~~~~~~R~~m~~~a~~ 65 (189)
T 2h29_A 2 KKIVLYGGQFNPIHTAHMIVASEVFHELQPDEFYFLPSFMSPLKKH---HDFIDVQHRLTMIQMIID 65 (189)
T ss_dssp EEEEEEEECCTTCCHHHHHHHHHHHHHHCCSEEEEEECSBCTTSCC---CSSCCCHHHHHHHHHHHH
T ss_pred ceEEEEEecCCcccHHHHHHHHHHHHHcCCCEEEEEECCCCCCCcC---CCCCCHHHHHHHHHHHHc
Confidence 36899999999999999999999999874 7888888887765421 468899999999998764
No 25
>3glv_A Lipopolysaccharide core biosynthesis protein; structural GEN PSI, MCSG, protein structure initiative; HET: AMP; 1.99A {Thermoplasma volcanium GSS1}
Probab=99.59 E-value=7.8e-16 Score=101.48 Aligned_cols=62 Identities=31% Similarity=0.344 Sum_probs=52.4
Q ss_pred cccEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCcccccCCCCCCCCHHHHHHHHHH
Q 034677 20 SYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEA 83 (87)
Q Consensus 20 ~~~~v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~ 83 (87)
+|++++++|+|||+|.||+.++++|.+++ +.++|+++.++....+ ...++.|.++|.++++.
T Consensus 1 ~m~~v~~~G~FD~vH~GH~~li~~a~~~~-~~~~v~v~~~~~~~~~-~~~~l~~~~eR~~~l~~ 62 (143)
T 3glv_A 1 GMIRVMATGVFDILHLGHIHYLKESKKLG-DELVVVVARDSTARNN-GKIPIFDENSRLALISE 62 (143)
T ss_dssp CCCEEEEEECCSSCCHHHHHHHHHHHTTS-SEEEEEECCHHHHHHT-TCCCSSCHHHHHHHHTT
T ss_pred CceEEEEEeecCCCCHHHHHHHHHHHHhC-CCcEEEEECCcchhhc-CCCCCCCHHHHHHHHHh
Confidence 37899999999999999999999999998 6899999887533212 24689999999999976
No 26
>1ej2_A Nicotinamide mononucleotide adenylyltransferase; dinucleotide binding fold, structural genomics, PSI; HET: NAD; 1.90A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.26.1.3 PDB: 1m8g_A* 1hyb_A* 1m8j_A* 1m8f_A* 1m8k_A*
Probab=99.58 E-value=4.1e-15 Score=100.95 Aligned_cols=60 Identities=17% Similarity=0.173 Sum_probs=50.0
Q ss_pred cEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEE-cCCCcccccCCCCCCCCHHHHHHHHHHHHh
Q 034677 22 GAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGV-CDGPMLTNKQFAELIQPVDERMRNVEAYIK 86 (87)
Q Consensus 22 ~~v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv-~~d~~~~~k~~~~~i~~~~~R~~~v~~~l~ 86 (87)
+++++||||||+|.||+.++++|++.+ ++++|++ +.+++. |+ .+..|.++|++|++..+.
T Consensus 4 ~~~i~~G~Fdp~H~GH~~l~~~a~~~~-d~v~v~v~~~~~p~--~~--~~~~~~~~R~~~~~~a~~ 64 (181)
T 1ej2_A 4 MRGLLVGRMQPFHRGHLQVIKSILEEV-DELIICIGSAQLSH--SI--RDPFTAGERVMMLTKALS 64 (181)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHTTTC-SEEEEEECSTTCCS--SS--SSCSCHHHHHHHHHHHHH
T ss_pred eEEEEEEEcCCcCHHHHHHHHHHHHhC-CeeEEEECCCCCCc--CC--CCCCCHHHHHHHHHHHHh
Confidence 579999999999999999999999997 7899988 555433 32 346799999999998764
No 27
>3elb_A Ethanolamine-phosphate cytidylyltransferase; kennedy pathway, CMP, CTP, phosphoethanolamine, cytidylyltra SGC, structural genomics consortium; HET: C5P; 2.00A {Homo sapiens}
Probab=99.56 E-value=3.9e-15 Score=111.10 Aligned_cols=63 Identities=25% Similarity=0.373 Sum_probs=55.9
Q ss_pred CCcccEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCccc-ccCCCCCCCCHHHHHHHHHH
Q 034677 18 DNSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLT-NKQFAELIQPVDERMRNVEA 83 (87)
Q Consensus 18 ~~~~~~v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~~~-~k~~~~~i~~~~~R~~~v~~ 83 (87)
.+++++|++.|+||++|.||+.++++|++++ |+++||+++|+.+. +|+ .|++|.++|+++++.
T Consensus 4 ~~~~~~v~~~G~FD~lH~GH~~lL~~A~~l~-d~LiVgV~~d~~v~~~K~--~pi~s~eER~~~l~~ 67 (341)
T 3elb_A 4 GRRAVRVWCDGCYDMVHYGHSNQLRQARAMG-DYLIVGVHTDEEIAKHKG--PPVFTQEERYKMVQA 67 (341)
T ss_dssp CCCCCEEEEEECCCSCCHHHHHHHHHHHHTS-SEEEEEECCHHHHHHHSS--CCSSCHHHHHHHHHH
T ss_pred CCCceEEEEEeeCCCCCHHHHHHHHHHHHhC-CcCEEEeecCHHHhccCC--CCCCCHHHHHHHHHH
Confidence 3678899999999999999999999999999 79999999997553 343 599999999999987
No 28
>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP}
Probab=99.53 E-value=5.2e-15 Score=106.69 Aligned_cols=61 Identities=23% Similarity=0.284 Sum_probs=50.0
Q ss_pred ccEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCcccccCCCCCCCCHHHHHHHHHHHH
Q 034677 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYI 85 (87)
Q Consensus 21 ~~~v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~~l 85 (87)
|+++++||||||+|.||+.++++|++.+ |+++|++++++.-.++ ....+.++|++|++..+
T Consensus 7 ~~~~i~~G~FdP~H~GH~~li~~a~~~~-d~v~v~v~~~~~p~~~---~~~~~~~~R~~m~~~~~ 67 (341)
T 2qjo_A 7 YQYGIYIGRFQPFHLGHLRTLNLALEKA-EQVIIILGSHRVAADT---RNPWRSPERMAMIEACL 67 (341)
T ss_dssp EEEEEEEECCTTCCHHHHHHHHHHHHHE-EEEEEEEEEETCCCCS---SSCSCHHHHHHHHHTTS
T ss_pred eeEEEEEEEeCCCCHHHHHHHHHHHHhC-CeEEEEECCcccCCCC---CCCCCHHHHHHHHHHHh
Confidence 6799999999999999999999999999 7888877766432222 23479999999998765
No 29
>1nup_A FKSG76; NAD biosynthesis, mitochondria, pyridine adenylyltransferase catalysis, transferase; HET: NMN; 1.90A {Homo sapiens} SCOP: c.26.1.3 PDB: 1nuq_A* 1nur_A 1nus_A* 1nut_A* 1nuu_A*
Probab=99.48 E-value=7e-14 Score=99.59 Aligned_cols=63 Identities=10% Similarity=0.162 Sum_probs=48.4
Q ss_pred CcccEEEEcccCCCCCHHHHHHHHHHHHHhc-Ce--EE----EEEcCCCcccccCCCCCCCCHHHHHHHHHHHHh
Q 034677 19 NSYGAVVLGGTFDRLHDGHRLFLKASAELAR-DR--IV----VGVCDGPMLTNKQFAELIQPVDERMRNVEAYIK 86 (87)
Q Consensus 19 ~~~~~v~~gGtFDplH~GHl~ll~~a~~~~~-d~--vi----vgv~~d~~~~~k~~~~~i~~~~~R~~~v~~~l~ 86 (87)
+.++++++||||||+|.||+.++++|++.++ +. .+ +.++.+++ +| .++.+.++|++|++..++
T Consensus 4 ~~~~i~i~~GsFdPiH~GHl~l~~~a~~~~~~~~~~~vv~~~~~p~~~~~--~k---~~~~~~~~R~~m~~~ai~ 73 (252)
T 1nup_A 4 RIPVVLLACGSFNPITNMHLRMFEVARDHLHQTGMYQVIQGIISPVNDTY--GK---KDLAASHHRVAMARLALQ 73 (252)
T ss_dssp CEEEEEEEEECCTTCCHHHHHHHHHHHHHHHHTTSEEEEEEEEEECCTTC--SS---SCCCCHHHHHHHHHHHGG
T ss_pred CCceEEEEEecCcHhhHHHHHHHHHHHHHhcccCCceEEEEEEeCCCCcc--cC---CCCCCHHHHHHHHHHHhc
Confidence 3467899999999999999999999999874 21 33 33444433 23 357999999999999875
No 30
>1kqn_A Nmnat, nicotinamide mononucleotide adenylyl transferase; nucleotidyltransferase superfamily; HET: NAD; 2.20A {Homo sapiens} SCOP: c.26.1.3 PDB: 1kqo_A* 1kr2_A* 1kku_A 1gzu_A*
Probab=99.44 E-value=1.5e-13 Score=99.63 Aligned_cols=64 Identities=16% Similarity=0.247 Sum_probs=48.9
Q ss_pred CCcccEEEEcccCCCCCHHHHHHHHHHHHHhc-C---eEEEE---EcCCCcccccCCCCCCCCHHHHHHHHHHHHh
Q 034677 18 DNSYGAVVLGGTFDRLHDGHRLFLKASAELAR-D---RIVVG---VCDGPMLTNKQFAELIQPVDERMRNVEAYIK 86 (87)
Q Consensus 18 ~~~~~~v~~gGtFDplH~GHl~ll~~a~~~~~-d---~vivg---v~~d~~~~~k~~~~~i~~~~~R~~~v~~~l~ 86 (87)
.+..+++++||||||+|.||+.++++|++.++ + .|+++ ++.+++ +| ..+.+.++|++|++..++
T Consensus 5 ~~~~~i~i~gGsFDPiH~GHl~l~~~a~~~~~~d~~~~vvv~~f~P~~~~~--~K---~~l~s~~~R~~ml~~ai~ 75 (279)
T 1kqn_A 5 EKTEVVLLACGSFNPITNMHLRLFELAKDYMNGTGRYTVVKGIISPVGDAY--KK---KGLIPAYHRVIMAELATK 75 (279)
T ss_dssp -CEEEEEEEEECCTTCCHHHHHHHHHHHHHHHHTSSEEEEEEEEEECCGGG--CC---TTCCCHHHHHHHHHHHTT
T ss_pred CCCceEEEEEeeecHhhHHHHHHHHHHHHHhcccCCceEEEEEEcCCCCCc--cc---cCCCCHHHHHHHHHHHhc
Confidence 45577899999999999999999999999873 3 26443 444332 23 357999999999998764
No 31
>1jhd_A Sulfate adenylyltransferase; sulfurylase, APS, chemoautotroph, bromide; 1.70A {Sulfur-oxidizing endosymbiont ofriftia pachyptila} SCOP: b.122.1.3 c.26.1.5
Probab=98.79 E-value=1.7e-08 Score=76.48 Aligned_cols=60 Identities=23% Similarity=0.237 Sum_probs=50.1
Q ss_pred ccEEEEcccCCCCCHHHHHHHHHHHHHhc-CeEEEEEcCCCcccccCCCCCCCCHHHHHHHHHHHHh
Q 034677 21 YGAVVLGGTFDRLHDGHRLFLKASAELAR-DRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIK 86 (87)
Q Consensus 21 ~~~v~~gGtFDplH~GHl~ll~~a~~~~~-d~vivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~~l~ 86 (87)
-+.|+-+|||||+|.||+.+++.|++..+ |.|++.++..+ . | ....|.+.|++|++.+++
T Consensus 192 w~~VvafqTrNPiHrgH~~l~~~Ale~~~~D~vll~P~~g~-~--K---~~di~~~~R~~~~~~~~~ 252 (396)
T 1jhd_A 192 WSKVVAFQTRNPMHRAHEELCRMAMESLDADGVVVHMLLGK-L--K---KGDIPAPVRDAAIRTMAE 252 (396)
T ss_dssp CSSEEEEEESSCCCHHHHHHHHHHHHHHTCSEEEEEEEECC-C--C---TTCCCHHHHHHHHHHHHH
T ss_pred CceEEEeccCCCCchHHHHHHHHHHHHcCCCeEEEEECCCC-C--C---CCCCCHHHHHHHHHHHHH
Confidence 35677799999999999999999999984 68888888764 2 2 346899999999998875
No 32
>2x0k_A Riboflavin biosynthesis protein RIBF; riboflavin kinase, nucleotide-binding, transferase, ATP-BIND multifunctional enzyme; 1.95A {Corynebacterium ammoniagenes}
Probab=98.77 E-value=1.8e-08 Score=74.85 Aligned_cols=62 Identities=27% Similarity=0.365 Sum_probs=46.8
Q ss_pred cEEEEcccCCCCCHHHHHHHHHHHHHhc--CeEEEEEcCCCc----ccccCCCCCCCCHHHHHHHHHH
Q 034677 22 GAVVLGGTFDRLHDGHRLFLKASAELAR--DRIVVGVCDGPM----LTNKQFAELIQPVDERMRNVEA 83 (87)
Q Consensus 22 ~~v~~gGtFDplH~GHl~ll~~a~~~~~--d~vivgv~~d~~----~~~k~~~~~i~~~~~R~~~v~~ 83 (87)
..+++.|+||++|.||..|+++|.+.++ +...++++.++. +.......++.|.++|.++++.
T Consensus 16 ~~vvtiG~FDGvH~GHq~Li~~a~~~a~~~~~~~vvvtFdphP~~v~~~~~~~~~L~~~~eR~~ll~~ 83 (338)
T 2x0k_A 16 NSAVTIGVFDGVHRGHQKLINATVEKAREVGAKAIMVTFDPHPVSVFLPRRAPLGITTLAERFALAES 83 (338)
T ss_dssp CEEEEESCCTTCCHHHHHHHHHHHHHHHHHTCEEEEEEESSCHHHHHSTTCSCCBSSCHHHHHHHHHH
T ss_pred CeEEEEEeCCcccHHHHHHHHHHHHHHHHcCCcEEEEEecCCHHHHcCCccCCCCCCCHHHHHHHHHh
Confidence 4789999999999999999999999873 234667776652 1111112568999999999986
No 33
>1v47_A ATP sulfurylase; product binding complex, zinc, riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; HET: ADX; 2.49A {Thermus thermophilus} SCOP: b.122.1.3 c.26.1.5
Probab=98.73 E-value=3.7e-08 Score=73.53 Aligned_cols=58 Identities=26% Similarity=0.248 Sum_probs=49.2
Q ss_pred cEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCcccccCCCCCCCCHHHHHHHHHHHHh
Q 034677 22 GAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIK 86 (87)
Q Consensus 22 ~~v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~~l~ 86 (87)
+.|+-.|||||+|.||..+++.|++.. |.|++.+...+ . | ....|.+.|++|++.+++
T Consensus 156 ~~VvafqTrNPiHrgH~~l~~~ale~~-d~vll~P~~g~-~--K---~~d~~~~~R~~~~~~~i~ 213 (349)
T 1v47_A 156 RKVVAFQTRNAPHRAHEYLIRLGLELA-DGVLVHPILGA-K--K---PDDFPTEVIVEAYQALIR 213 (349)
T ss_dssp CSEEEEEESSCCCHHHHHHHHHHHHHS-SEEEEEEBCSC-C--C---TTSCCHHHHHHHHHHHHH
T ss_pred CeEEEeecCCCCchHHHHHHHHHHHhC-CcEEEEECCCC-C--C---CCCCCHHHHHHHHHHHHh
Confidence 566668999999999999999999986 89999888654 1 3 346999999999998875
No 34
>1mrz_A Riboflavin kinase/FMN adenylyltransferase; rossmann fold, flavin binding domain, 6-stranded beta barrel nucleotide binding domain; HET: CIT; 1.90A {Thermotoga maritima} SCOP: b.43.5.1 c.26.1.3 PDB: 1s4m_A* 1t6x_A* 1t6y_A* 1t6z_A* 2i1l_A
Probab=98.67 E-value=2.4e-08 Score=72.98 Aligned_cols=59 Identities=25% Similarity=0.307 Sum_probs=42.7
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHHhc--CeEEEEEcCCC---cccccCCCCCCCCHHHHHHHHHH
Q 034677 24 VVLGGTFDRLHDGHRLFLKASAELAR--DRIVVGVCDGP---MLTNKQFAELIQPVDERMRNVEA 83 (87)
Q Consensus 24 v~~gGtFDplH~GHl~ll~~a~~~~~--d~vivgv~~d~---~~~~k~~~~~i~~~~~R~~~v~~ 83 (87)
|++.|+||.+|.||..++++|.+.++ +...++++.|+ .++.+ ...++.|.++|.+++++
T Consensus 2 vvtiG~FDgvH~GH~~ll~~a~~~a~~~~~~~vVvtFdphP~~l~~~-~~~~l~~~~eR~~ll~~ 65 (293)
T 1mrz_A 2 VVSIGVFDGVHIGHQKVLRTMKEIAFFRKDDSLIYTISYPPEYFLPD-FPGLLMTVESRVEMLSR 65 (293)
T ss_dssp CEEEECCTTCCHHHHHHHHHHHHHHHHHTCCCEEEEESSCGGGGSTT-CCCBSSCHHHHHHHHTT
T ss_pred EEEEeeCccccHHHHHHHHHHHHHHHHcCCeEEEEEecCCHHHhCCC-CCCCCCCHHHHHHHHHh
Confidence 57789999999999999999999883 12334455442 22211 13569999999999875
No 35
>2ejc_A Pantoate--beta-alanine ligase; X-RAY diffraction, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Thermotoga maritima}
Probab=98.64 E-value=7.5e-08 Score=70.21 Aligned_cols=60 Identities=18% Similarity=0.307 Sum_probs=44.8
Q ss_pred cEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCC--cccccCCCCCCCCHHHHHHHHHH
Q 034677 22 GAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGP--MLTNKQFAELIQPVDERMRNVEA 83 (87)
Q Consensus 22 ~~v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~--~~~~k~~~~~i~~~~~R~~~v~~ 83 (87)
+++++ ||||-+|.||+.|+++|.+.+ +.++|++..+| +.++........++++|.++++.
T Consensus 23 ~V~~v-gtfdgLH~GH~sLI~~A~~~a-d~vVVSffvnP~qf~~~ed~~~yp~tle~d~~lL~~ 84 (280)
T 2ejc_A 23 TIGFV-PTMGYLHEGHLSLVRRARAEN-DVVVVSIFVNPTQFGPNEDYERYPRDFERDRKLLEK 84 (280)
T ss_dssp CEEEE-EECSCCCHHHHHHHHHHHHHS-SEEEEEECCCGGGCCTTSCGGGSCCCHHHHHHHHHT
T ss_pred EEEEE-cCCccccHHHHHHHHHHHHhC-CEEEEEEeCChHHhcCCcccccCCCCHHHHHHHHHH
Confidence 45666 899999999999999999998 79999985554 44332111224678999988864
No 36
>3gmi_A UPF0348 protein MJ0951; protein with unknown function, structural genomics, PSI, MCS protein structure initiative; 1.91A {Methanocaldococcus jannaschii}
Probab=98.36 E-value=1.5e-06 Score=65.07 Aligned_cols=61 Identities=18% Similarity=0.125 Sum_probs=45.5
Q ss_pred CcccEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCc--ccccCCCCCCCCHHHHHHHHHHH
Q 034677 19 NSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPM--LTNKQFAELIQPVDERMRNVEAY 84 (87)
Q Consensus 19 ~~~~~v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~--~~~k~~~~~i~~~~~R~~~v~~~ 84 (87)
...++++.-|.|||+|.||..++++|.+ . +.+++..+ .++ +. +....+.+..+|.++++..
T Consensus 50 ~~~~~v~~lG~FDg~H~GHq~lI~~a~~-~-~~~~~Vms-~~~~~vq--rg~~~l~~~~~R~~~~~~~ 112 (357)
T 3gmi_A 50 NKDKIVCDFTEYNPLHKGHKYALEKGKE-H-GIFISVLP-GPLERSG--RGIPYFLNRYIRAEMAIRA 112 (357)
T ss_dssp TCCCEEEEECCCTTCCHHHHHHHHHHHT-S-SEEEEEEC-CTTSBCT--TSSBCSSCHHHHHHHHHHH
T ss_pred CCCCEEEEEEecCccCHHHHHHHHHHHH-c-CCeEEEEc-CchHHhc--CCCCcCCCHHHHHHHHHHC
Confidence 3456888999999999999999999998 3 54554454 333 32 2235689999999998864
No 37
>3op1_A Macrolide-efflux protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PEG; 2.49A {Streptococcus pneumoniae}
Probab=98.29 E-value=1.8e-06 Score=63.60 Aligned_cols=64 Identities=25% Similarity=0.295 Sum_probs=45.6
Q ss_pred ccEEEEcccCCCCCHHHHHHHHHHHHHhcC--eEEEEEcCCC-c---ccc--cCCCCCCCCHHHHHHHHHHH
Q 034677 21 YGAVVLGGTFDRLHDGHRLFLKASAELARD--RIVVGVCDGP-M---LTN--KQFAELIQPVDERMRNVEAY 84 (87)
Q Consensus 21 ~~~v~~gGtFDplH~GHl~ll~~a~~~~~d--~vivgv~~d~-~---~~~--k~~~~~i~~~~~R~~~v~~~ 84 (87)
...+++-|+||-+|.||..++++|.+.+.. .-.+++|-++ + +.. ......+.+.++|.++++.+
T Consensus 20 ~~~vvtiG~FDGvH~GHq~li~~a~~~a~~~~~~~vV~TFdphP~~v~~~~~~~~~~~Lt~~~eK~~ll~~l 91 (308)
T 3op1_A 20 SDSVVVLGYFDGIHKGHQELFRVANKAARKDLLPIVVMTFNESPKIALEPYHPDLFLHILNPAERERKLKRE 91 (308)
T ss_dssp SCEEEEESCCSSCCHHHHHHHHHHHHHSSTTCCCEEEEEESSCTHHHHSCCCGGGGCBSSCHHHHHHHHHHH
T ss_pred CCeEEEEecCCcccHHHHHHHHHHHHHHHhcCCceEEEEecCCHHHHhCccccCCcccCCCHHHHHHHHHHc
Confidence 356888999999999999999999999731 2244455443 1 111 11135699999999999864
No 38
>1v8f_A Pantoate-beta-alanine ligase; rossmann fold, dimer, structural genomics, riken STR genomics/proteomics initiative, RSGI; HET: P6G; 1.90A {Thermus thermophilus} SCOP: c.26.1.4 PDB: 1ufv_A
Probab=97.42 E-value=0.00072 Score=49.09 Aligned_cols=57 Identities=18% Similarity=0.242 Sum_probs=43.1
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCc--ccccCCCCCCCCHHHHHHHHHH
Q 034677 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPM--LTNKQFAELIQPVDERMRNVEA 83 (87)
Q Consensus 23 ~v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~--~~~k~~~~~i~~~~~R~~~v~~ 83 (87)
.|.+-|. +|.||..|+++|.+.+ +.++|.+..+|. .++........++++|.+.++.
T Consensus 21 ~VpTmG~---lH~GH~~Li~~A~~~a-~~vVvsff~nP~qf~~~ed~~~yp~tle~d~~ll~~ 79 (276)
T 1v8f_A 21 FVPTMGY---LHRGHLALVERARREN-PFVVVSVFVNPLQFGPGEDYHRYPRDLERDRALLQE 79 (276)
T ss_dssp EEEECSS---CCHHHHHHHHHHHHHC-SEEEEEECCCGGGCCTTSSTTTSCCCHHHHHHHHHH
T ss_pred EEEeCCC---ccHHHHHHHHHHHHhC-CEEEEEEECCHHHhCCCcccCCCCcCHHHHHHHHHh
Confidence 3455666 9999999999999998 789999888753 3322222347889999998875
No 39
>1r6x_A ATP:sulfate adenylyltransferase; APS kinase-like domain; 1.40A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5
Probab=97.03 E-value=0.0026 Score=48.21 Aligned_cols=59 Identities=24% Similarity=0.193 Sum_probs=43.0
Q ss_pred cEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCcccccCCCCCCCCHHHHHHHHHHHHh
Q 034677 22 GAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIK 86 (87)
Q Consensus 22 ~~v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~~l~ 86 (87)
+.|+-..|+||+|.||..++.+++....+.|+|-+.... .| ..-.|.+.|++..+.+++
T Consensus 188 ~~VvafqtrNP~HraH~e~~~r~a~e~~~~lllhPlvG~---tK---~~Dip~~vR~~~~~~~l~ 246 (395)
T 1r6x_A 188 DRVVAFQTRNPMHRAHRELTVRAAREANAKVLIHPVVGL---TK---PGDIDHHTRVRVYQEIIK 246 (395)
T ss_dssp CCEEEECCSSCCCHHHHHHHHHHHHHTTCEEEECCBCSB---CC---TTCCCHHHHHHHHHHHGG
T ss_pred CcEEEeccCCCcchhhHHHHHHHHHHcCCcEEEEECCCC---CC---CCCCCHHHHHHHHHHHHH
Confidence 567778899999999966665555553466777665542 12 345899999999998875
No 40
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=97.00 E-value=0.0037 Score=48.52 Aligned_cols=59 Identities=24% Similarity=0.187 Sum_probs=43.5
Q ss_pred cEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCcccccCCCCCCCCHHHHHHHHHHHHh
Q 034677 22 GAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIK 86 (87)
Q Consensus 22 ~~v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~~l~ 86 (87)
+.|+-..|+||+|.||..++.+++....+.|++-+.-... | ..-.|.+.|++..+.+++
T Consensus 189 ~~v~afqtrnP~HraH~e~~~~~a~e~~~~lll~pl~g~~---k---~~di~~~~r~~~~~~~~~ 247 (511)
T 1g8f_A 189 DRVVAFQTRNPMHRAHRELTVRAAREANAKVLIHPVVGLT---K---PGDIDHHTRVRVYQEIIK 247 (511)
T ss_dssp CCEEEEEESSCCCHHHHHHHHHHHHHHTCEEEEEEBCSBC---S---TTCCCHHHHHHHHHHHGG
T ss_pred CcEEEEecCCCCchHHHHHHHHHHHHcCCcEEEEECCCCC---C---CCCCCHHHHHHHHHHHHH
Confidence 5677788999999999666655554434777777765532 2 345899999999998875
No 41
>3ag6_A Pantothenate synthetase; ATP-dependent enzyme, ATP-binding, nucleotide-binding, pantothenate biosynthesis; HET: PAJ PG4; 1.85A {Staphylococcus aureus} PDB: 3ag5_A* 2x3f_A*
Probab=96.95 E-value=0.0043 Score=45.15 Aligned_cols=59 Identities=25% Similarity=0.365 Sum_probs=41.5
Q ss_pred cEEE--EcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCC--cccccCCCCCCCCHHHHHHHHHHH
Q 034677 22 GAVV--LGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGP--MLTNKQFAELIQPVDERMRNVEAY 84 (87)
Q Consensus 22 ~~v~--~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~--~~~~k~~~~~i~~~~~R~~~v~~~ 84 (87)
++++ +-|. +|.||..|+++|.+.+ +.++|.+..+| +.++........+.+++.+.++..
T Consensus 24 ~I~fVpTmG~---lH~GH~~LI~~a~~~a-~~vVvsffvnP~qf~~~ed~~~yprtle~d~~ll~~~ 86 (283)
T 3ag6_A 24 TIGFIPTMGA---LHDGHLTMVRESVSTN-DITIVSVFVNPLQFGPNEDFDAYPRQIDKDLELVSEV 86 (283)
T ss_dssp CEEEEEECSS---CCHHHHHHHHHHHTTS-SEEEEEECCCGGGCCTTSSTTTSCCCHHHHHHHHHHH
T ss_pred cEEEEECCcc---ccHHHHHHHHHHHHhC-CEEEEEEeCChhhcCCccccccCCCCHHHHHHHHHhC
Confidence 3444 5554 9999999999999998 68888887665 223221223367889999888753
No 42
>3cov_A Pantothenate synthetase; pantothenate biosynthesis, enzym ligase, drug design, ATP-binding, magnesium, metal-binding; 1.50A {Mycobacterium tuberculosis} SCOP: c.26.1.4 PDB: 3cow_A* 3coy_A* 3coz_A* 3imc_A* 3ime_A* 3img_A* 3iob_A* 3ioc_A* 3iod_A* 3ioe_A* 3iub_A* 3iue_A* 3ivc_A* 3ivg_A* 3ivx_A* 2a84_A* 1n2b_A* 1n2e_A* 1n2g_A* 1n2h_A* ...
Probab=96.77 E-value=0.002 Score=47.36 Aligned_cols=59 Identities=24% Similarity=0.387 Sum_probs=41.5
Q ss_pred EEEcccCCCCCHHHHHHHHHHHH-HhcCeEEEEEcCCCc--ccccCCCCCCCCHHHHHHHHHH
Q 034677 24 VVLGGTFDRLHDGHRLFLKASAE-LARDRIVVGVCDGPM--LTNKQFAELIQPVDERMRNVEA 83 (87)
Q Consensus 24 v~~gGtFDplH~GHl~ll~~a~~-~~~d~vivgv~~d~~--~~~k~~~~~i~~~~~R~~~v~~ 83 (87)
+.+-.|+.-+|.||..|+++|.+ .+ +.++|.+..+|. .++........+++++.+.++.
T Consensus 35 vg~VpTmG~LH~GH~sLI~~A~~~~a-~~vVvSffvnP~qF~~~ed~~~yprtle~d~~lL~~ 96 (301)
T 3cov_A 35 VMLVPTMGALHEGHLALVRAAKRVPG-SVVVVSIFVNPMQFGAGGDLDAYPRTPDDDLAQLRA 96 (301)
T ss_dssp EEEEEECSCCCHHHHHHHHHHHTSTT-EEEEEEECCCGGGCCSSSHHHHSCCCHHHHHHHHHH
T ss_pred EEEEecCCcccHHHHHHHHHHHHhcC-CEEEEEEcCChhhcCCccccccCCCCHHHHHHHHHh
Confidence 44446666799999999999999 77 788888877652 2221111225778999888875
No 43
>3uk2_A Pantothenate synthetase; AMP, structural genomics, seattle S genomics center for infectious disease, ssgcid, ligase; HET: AMP; 2.25A {Burkholderia thailandensis} SCOP: c.26.1.0
Probab=96.60 E-value=0.0044 Score=45.17 Aligned_cols=59 Identities=17% Similarity=0.376 Sum_probs=43.8
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCcc--cccCCCCCCCCHHHHHHHHHH
Q 034677 24 VVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPML--TNKQFAELIQPVDERMRNVEA 83 (87)
Q Consensus 24 v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~~--~~k~~~~~i~~~~~R~~~v~~ 83 (87)
+-|-.|..-+|.||+.|+++|.+.+ +.++|.+.-++.- ++.....-..+.+++.++++.
T Consensus 24 ig~VPTMG~LH~GH~sLi~~A~~~~-d~vVvSifvnP~qf~~~ed~~~yprt~e~d~~ll~~ 84 (283)
T 3uk2_A 24 TAFVPTMGNLHEGHLSLMRLARQHG-DPVVASIFVNRLQFGPNEDFDKYPRTLQEDIEKLQK 84 (283)
T ss_dssp CEEEEECSSCCHHHHHHHHHHHTTC-SSEEEEECCCGGGSCTTSCTTTSCCCHHHHHHHHHT
T ss_pred EEEECCCCcccHHHHHHHHHHHHhC-CEEEEEEcCCHHHcCCcccccccCCCHHHHHHHHHH
Confidence 4555799999999999999999998 7888888776532 222223345778888888764
No 44
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=96.56 E-value=0.0077 Score=46.75 Aligned_cols=59 Identities=20% Similarity=0.115 Sum_probs=44.8
Q ss_pred cEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCcccccCCCCCCCCHHHHHHHHHHHHh
Q 034677 22 GAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIK 86 (87)
Q Consensus 22 ~~v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~~l~ 86 (87)
+.|+--=|+||+|.||..++.+|+...++.|+|-+..... | ..-.|.+.|++..+.+++
T Consensus 164 ~~v~afqtrnP~Hr~H~~l~~~a~~~~~~~llv~p~~g~~---k---~~di~~~~R~~~~~~~~~ 222 (546)
T 2gks_A 164 DKIVAFQTRNPMHRVHEELTKRAMEKVGGGLLLHPVVGLT---K---PGDVDVYTRMRIYKVLYE 222 (546)
T ss_dssp SCEEEECCSSCCCHHHHHHHHHHHHHHTSEEEECCBCSBC---C---TTSCCHHHHHHHHHHHHH
T ss_pred CcEEEEecCCCCcHHHHHHHHHHHHhcCCcEEEEeCcCCC---C---CCCCCHHHHHHHHHHHHH
Confidence 5566678999999999999999997533677776554421 2 346899999999998864
No 45
>3q12_A Pantoate--beta-alanine ligase; structural genomics, center for structural genomics of infec diseases, csgid; HET: PAF; 1.58A {Yersinia pestis} SCOP: c.26.1.4 PDB: 3q10_A* 3mue_A 1iho_A 3guz_A*
Probab=96.52 E-value=0.0033 Score=45.98 Aligned_cols=36 Identities=28% Similarity=0.433 Sum_probs=29.9
Q ss_pred ccEEE--EcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCC
Q 034677 21 YGAVV--LGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGP 60 (87)
Q Consensus 21 ~~~v~--~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~ 60 (87)
-++++ +-|. +|.||+.|+++|.+.+ |.++|++--||
T Consensus 25 ~~IgfVPTMG~---LH~GHlsLv~~Ar~~~-d~vVVSIFVNP 62 (287)
T 3q12_A 25 KRIALVPTMGN---LHEGHMTLVDEAKTRA-DVVVVTIFVNP 62 (287)
T ss_dssp CCEEEEEECSS---CCHHHHHHHHHHHTTS-SEEEEEECCCG
T ss_pred CeEEEEcCCCc---ccHHHHHHHHHHHHhC-CEEEEEeccCc
Confidence 35666 5664 9999999999999998 89999987775
No 46
>3inn_A Pantothenate synthetase; ssgcid, SBRI, UW, decode, NIH, niaid, pantoate beta alanine ligase, ATP-binding, cytoplasm, ligase; HET: ATP; 2.10A {Brucella melitensis}
Probab=96.43 E-value=0.022 Score=42.12 Aligned_cols=58 Identities=16% Similarity=0.209 Sum_probs=39.0
Q ss_pred cEEE--EcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCC--cccccCCCCCCCCHHHHHHHHHH
Q 034677 22 GAVV--LGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGP--MLTNKQFAELIQPVDERMRNVEA 83 (87)
Q Consensus 22 ~~v~--~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~--~~~~k~~~~~i~~~~~R~~~v~~ 83 (87)
++++ +-| -+|.||+.|+++|.+.+ |.++|.+--+| +.++.-...---+++...++++.
T Consensus 44 ~IgfVPTMG---~LH~GHlsLi~~A~~~~-d~vVVSIFVNP~QF~~~EDl~~YPRtle~D~~ll~~ 105 (314)
T 3inn_A 44 KIGFVPTMG---YLHKGHLELVRRARVEN-DVTLVSIFVNPLQFGANEDLGRYPRDLERDAGLLHD 105 (314)
T ss_dssp CEEEEEECS---SCCHHHHHHHHHHHHHC-SEEEEEECCCGGGSCTTSSTTTCCCCHHHHHHHHHH
T ss_pred eEEEEcCCC---ccCHHHHHHHHHHHHhC-CEEEEEECCChhhcCCCccccccCCCHHHHHHHHHh
Confidence 4555 445 59999999999999997 89999987765 22322221222556666666654
No 47
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=96.33 E-value=0.0081 Score=46.95 Aligned_cols=59 Identities=20% Similarity=0.141 Sum_probs=44.5
Q ss_pred cEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCcccccCCCCCCCCHHHHHHHHHHHHh
Q 034677 22 GAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIK 86 (87)
Q Consensus 22 ~~v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~~l~ 86 (87)
+.|+--=|+||+|.||..++.+|+...++.|+|-+..... | ..-.|.+.|++..+.+++
T Consensus 191 ~~v~afqtrnP~Hr~H~~l~~~a~~~~~~~llv~pl~g~~---k---~~di~~~~R~~~~~~~~~ 249 (573)
T 1m8p_A 191 SRVVAFQTRNPMHRAHRELTVRAARSRQANVLIHPVVGLT---K---PGDIDHFTRVRAYQALLP 249 (573)
T ss_dssp CSEEEECCSSCCCHHHHHHHHHHHHHTTCEEEECCBCCCC---C---TTCHHHHHHHHHHHHHGG
T ss_pred CeEEEEeeCCCcchhhHHHHHHHHHhcCCcEEEEeCCCCC---C---CCCCCHHHHHHHHHHHHH
Confidence 4555567899999999999999998744677776544321 2 345799999999998865
No 48
>3n8h_A Pantothenate synthetase; alpha-beta sandwich, ligase, structural genomics, structural of infectious diseases; HET: MSE AMP GOL; 2.00A {Francisella tularensis subsp} PDB: 3qtt_A*
Probab=94.67 E-value=0.049 Score=39.35 Aligned_cols=34 Identities=26% Similarity=0.457 Sum_probs=28.7
Q ss_pred EcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCC
Q 034677 26 LGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGP 60 (87)
Q Consensus 26 ~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~ 60 (87)
|--|---+|.||+.|+++|.+.+ |.++|.+--||
T Consensus 28 ~VPTMGaLH~GHlsLv~~Ar~~~-d~vVVSIFVNP 61 (264)
T 3n8h_A 28 FVPTMGALHNGHISLIKKAKSEN-DVVIVSIFVNP 61 (264)
T ss_dssp EEEECSSCCHHHHHHHHHHHHHC-SEEEEEECCCG
T ss_pred EECCCcchhHHHHHHHHHHHHhC-CEEEEEEccCc
Confidence 33566689999999999999998 89999987775
No 49
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.67 E-value=0.15 Score=39.74 Aligned_cols=58 Identities=12% Similarity=-0.027 Sum_probs=43.2
Q ss_pred cEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCcccccCCCCCCCCHHHHHHHHHHHHh
Q 034677 22 GAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIK 86 (87)
Q Consensus 22 ~~v~~gGtFDplH~GHl~ll~~a~~~~~d~vivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~~l~ 86 (87)
+++-| =|-||+|.||..++.+++...++.|++-+.-... | ..-.|.+.|++..+.+++
T Consensus 165 ~v~af-qtrnp~Hrah~~~~~~~~~~~~~~lll~pl~g~~---k---~~d~~~~~r~~~~~~~~~ 222 (552)
T 3cr8_A 165 RIIAW-QARQPMHRAQYEFCLKSAIENEANLLLHPQVGGD---I---TEAPAYFGLVRSFLAIRD 222 (552)
T ss_dssp SEEEE-CCSSCCCHHHHHHHHHHHHHTTCEEEECCBCCCC---T---TTCTTHHHHHHHHHHHGG
T ss_pred ceEEE-ecCCCCchHHHHHHHHHHHhcCCeEEEEeccCCC---C---CCCCCHHHHHHHHHHHHH
Confidence 34444 8999999999999999995544667765544321 2 457899999999998875
No 50
>3mxt_A Pantothenate synthetase; alpha-beta-alpha, structural genomics, center for structural of infectious diseases, csgid, ligase; HET: MSE; 1.85A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3uy4_A*
Probab=93.74 E-value=0.058 Score=39.31 Aligned_cols=30 Identities=33% Similarity=0.616 Sum_probs=25.2
Q ss_pred cCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCC
Q 034677 29 TFDRLHDGHRLFLKASAELARDRIVVGVCDGP 60 (87)
Q Consensus 29 tFDplH~GHl~ll~~a~~~~~d~vivgv~~d~ 60 (87)
|=--+|.||+.|+++|.+ + |.++|.+--||
T Consensus 32 TMGaLH~GHlsLv~~Ar~-~-d~VVVSIFVNP 61 (285)
T 3mxt_A 32 TMGFLHDGHLSLVKHAKT-Q-DKVIVSIFVNP 61 (285)
T ss_dssp ECSSCCHHHHHHHHHHTT-S-SEEEEEECCCG
T ss_pred CCCcccHHHHHHHHHHHh-C-CEEEEEeccCc
Confidence 333599999999999999 6 89999987765
No 51
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=92.98 E-value=0.45 Score=37.79 Aligned_cols=59 Identities=20% Similarity=0.234 Sum_probs=44.5
Q ss_pred cEEEEcccCCCCCHHHHHHHHHHHHHhcC------eEEEEEcCCCcccccCCCCCCCCHHHHHHHHHHHHh
Q 034677 22 GAVVLGGTFDRLHDGHRLFLKASAELARD------RIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIK 86 (87)
Q Consensus 22 ~~v~~gGtFDplH~GHl~ll~~a~~~~~d------~vivgv~~d~~~~~k~~~~~i~~~~~R~~~v~~~l~ 86 (87)
+.|+--=|-||+|.||..|.+.|++...| -|+|-+.-... | ..-.|.+.|++..+.+++
T Consensus 413 ~~VvafqtrNP~HraHe~l~~~a~~~~~d~g~~~~~lll~pl~G~t---k---~~di~~~~r~~~~~~~~~ 477 (630)
T 1x6v_B 413 DAVSAFQLRNPVHNGHALLMQDTHKQLLERGYRRPVLLLHPLGGWT---K---DDDVPLMWRMKQHAAVLE 477 (630)
T ss_dssp SEEEEEEESSCCCHHHHHHHHHHHHHHHHHTCSSEEEEEEEBCSCC---C---TTSCCHHHHHHHHHHHHH
T ss_pred CeEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCcEEEEeCcCCC---C---CCCCCHHHHHHHHHHHHH
Confidence 45555579999999999999999874213 47776655532 2 456899999999998886
No 52
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=49.03 E-value=10 Score=28.81 Aligned_cols=19 Identities=16% Similarity=0.085 Sum_probs=14.2
Q ss_pred cEEEEcccC---CCCCHHHHHH
Q 034677 22 GAVVLGGTF---DRLHDGHRLF 40 (87)
Q Consensus 22 ~~v~~gGtF---DplH~GHl~l 40 (87)
+..+++.+. +++|.||..-
T Consensus 26 ~~~i~~p~pypng~lHiGH~r~ 47 (536)
T 4dlp_A 26 KYYITTAIAYPNGKPHIGHAYE 47 (536)
T ss_dssp EEEEEECCBCCSSCCCHHHHHH
T ss_pred CEEEeCCCCCCCCCcCcchhHH
Confidence 456777765 7999999863
No 53
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=45.58 E-value=92 Score=23.22 Aligned_cols=56 Identities=27% Similarity=0.353 Sum_probs=29.7
Q ss_pred cCCCCCHHHHHHHHHHHHHh--cCeEEEEEcCCC-cccc---cCCCCCCCCHHHHHHHHHHH
Q 034677 29 TFDRLHDGHRLFLKASAELA--RDRIVVGVCDGP-MLTN---KQFAELIQPVDERMRNVEAY 84 (87)
Q Consensus 29 tFDplH~GHl~ll~~a~~~~--~d~vivgv~~d~-~~~~---k~~~~~i~~~~~R~~~v~~~ 84 (87)
|=+-+|.||+..+.....+- +-++++-+.+.. .+-. |...++..+.++-.++++.+
T Consensus 42 Tg~sLHlGh~v~l~~~~~lQ~~G~~~~~lIgd~ta~igdp~gk~~~R~~l~~e~i~~n~~~~ 103 (420)
T 1jil_A 42 TADSLHIGHLLPFLTLRRFQEHGHRPIVLIGGGTGMIGDPSGKSEERVLQTEEQVDKNIEGI 103 (420)
T ss_dssp SSSSCBHHHHHHHHHHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHCCCcEEEEEcCceeEecCCCccccccccCCHHHHHHHHHHH
Confidence 33339999988777666553 235555554432 1111 11234556666665555443
No 54
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=40.57 E-value=1.1e+02 Score=22.85 Aligned_cols=56 Identities=16% Similarity=0.140 Sum_probs=30.6
Q ss_pred cCCCCCHHHHHHHHHHHHHh--cCeEEEEEcCCC-cc--c-ccCCCCCCCCHHHHHHHHHHH
Q 034677 29 TFDRLHDGHRLFLKASAELA--RDRIVVGVCDGP-ML--T-NKQFAELIQPVDERMRNVEAY 84 (87)
Q Consensus 29 tFDplH~GHl~ll~~a~~~~--~d~vivgv~~d~-~~--~-~k~~~~~i~~~~~R~~~v~~~ 84 (87)
|=+-+|.||+..+.....+- +-++++-+.+.. .+ + -|...++..+.++-.++++.+
T Consensus 40 Tg~sLHlGh~v~l~~l~~lQ~~G~~~i~lIgd~ta~igdpsgk~~~R~~l~~e~i~~n~~~~ 101 (419)
T 2ts1_A 40 TADSLHIGHLATILTMRRFQQAGHRPIALVGGATGLIGDPSGKKSERTLNAKETVEAWSARI 101 (419)
T ss_dssp SSSSCBGGGHHHHHHHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHCCCcEEEEEcCceeEecCCCCccccccCCCHHHHHHHHHHH
Confidence 33449999988776666553 235555554332 11 1 111235566777766666544
No 55
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=40.28 E-value=16 Score=28.12 Aligned_cols=19 Identities=16% Similarity=0.055 Sum_probs=13.1
Q ss_pred ccEEEEcccC---CCCCHHHHH
Q 034677 21 YGAVVLGGTF---DRLHDGHRL 39 (87)
Q Consensus 21 ~~~v~~gGtF---DplH~GHl~ 39 (87)
-+..+++.+. +++|.||..
T Consensus 26 ~~~~i~~~~py~ng~lHiGH~r 47 (564)
T 3kfl_A 26 KVFFATTPIYYVNASPHIGHVY 47 (564)
T ss_dssp CCEEEEEEEEECSSCCCHHHHH
T ss_pred CCEEEeCCCCCCCCCCCcchhH
Confidence 3455555543 699999996
No 56
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=39.93 E-value=18 Score=26.63 Aligned_cols=17 Identities=29% Similarity=0.399 Sum_probs=13.0
Q ss_pred EEEEcccC--CCCCHHHHH
Q 034677 23 AVVLGGTF--DRLHDGHRL 39 (87)
Q Consensus 23 ~v~~gGtF--DplH~GHl~ 39 (87)
..++.|-+ +++|.||..
T Consensus 41 ~~y~~gPt~yg~~HiGHar 59 (414)
T 3c8z_A 41 TMYVCGITPYDATHLGHAA 59 (414)
T ss_dssp EEEECCCCTTSCCBHHHHH
T ss_pred eEEeCCCcCCCCcCccccH
Confidence 44556655 999999997
No 57
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=39.19 E-value=21 Score=26.05 Aligned_cols=27 Identities=30% Similarity=0.336 Sum_probs=15.8
Q ss_pred CCHHHHH-HHHHHHHHhc-CeEEEEEcCC
Q 034677 33 LHDGHRL-FLKASAELAR-DRIVVGVCDG 59 (87)
Q Consensus 33 lH~GHl~-ll~~a~~~~~-d~vivgv~~d 59 (87)
+|.||+. .+.....+-+ -.+++-+.+.
T Consensus 35 lHLGn~~g~l~~~~~lQ~~~~~~~~IaD~ 63 (351)
T 1yi8_B 35 LHLGHLAGSLQNRVRLQDEAELFVLLADV 63 (351)
T ss_dssp CBHHHHHHTHHHHHHHTSSSEEEEEECHH
T ss_pred ccHHHHHHHHHHHHHHHHhCCeEEEEecc
Confidence 9999987 5555533321 2455656553
No 58
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=39.19 E-value=16 Score=27.25 Aligned_cols=17 Identities=24% Similarity=0.243 Sum_probs=13.1
Q ss_pred EEEEcccC---CCCCHHHHH
Q 034677 23 AVVLGGTF---DRLHDGHRL 39 (87)
Q Consensus 23 ~v~~gGtF---DplH~GHl~ 39 (87)
..+++.+. +++|.||..
T Consensus 5 ~~i~~p~py~~g~lHiGH~r 24 (500)
T 2d5b_A 5 FYVTTPIYYVNAEPHLGHAY 24 (500)
T ss_dssp EEEECCCEETTSCCCHHHHH
T ss_pred EEEecCCCCCCCCcchhhHH
Confidence 45666665 899999996
No 59
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=39.01 E-value=36 Score=24.87 Aligned_cols=28 Identities=14% Similarity=0.039 Sum_probs=18.5
Q ss_pred CCCHHHHHHHHHHHHHh--cCeEEEEEcCC
Q 034677 32 RLHDGHRLFLKASAELA--RDRIVVGVCDG 59 (87)
Q Consensus 32 plH~GHl~ll~~a~~~~--~d~vivgv~~d 59 (87)
++|.||+..+.....+- +-.+++-+.+.
T Consensus 47 ~lHlG~l~~l~~~~~lQ~~G~~~~~~iaD~ 76 (364)
T 2cya_A 47 VAHIGWLVWMYKVKDLVEAGVDFSVLEATW 76 (364)
T ss_dssp SCBTHHHHHHHHHHHHHHTTCEEEEEECHH
T ss_pred CccHhHHHHHHHHHHHHHCCCCEEEEEeCc
Confidence 39999977776666553 24566666553
No 60
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=38.71 E-value=31 Score=25.49 Aligned_cols=29 Identities=17% Similarity=0.093 Sum_probs=18.7
Q ss_pred CCC---CCHHHHHHHHHHHHHh--cCeEEEEEcC
Q 034677 30 FDR---LHDGHRLFLKASAELA--RDRIVVGVCD 58 (87)
Q Consensus 30 FDp---lH~GHl~ll~~a~~~~--~d~vivgv~~ 58 (87)
||| +|.||+.-+.....+. +-.+++-+.+
T Consensus 46 ~~PTG~LHlG~~~~al~~~~~~q~g~~~ii~I~D 79 (394)
T 2dlc_X 46 TAPTGRPHCGYFVPMTKLADFLKAGCEVTVLLAD 79 (394)
T ss_dssp ECCCSCCBGGGHHHHHHHHHHHHTTCEEEEEECH
T ss_pred eCCCCCccHHHHHHHHHHHHHHHcCCcEEEEEcC
Confidence 565 9999987665444332 2567777765
No 61
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=34.53 E-value=27 Score=26.23 Aligned_cols=17 Identities=29% Similarity=0.339 Sum_probs=12.5
Q ss_pred EEEEcccC--CCCCHHHHH
Q 034677 23 AVVLGGTF--DRLHDGHRL 39 (87)
Q Consensus 23 ~v~~gGtF--DplH~GHl~ 39 (87)
.+++.|-- +++|.||+.
T Consensus 24 ~~yv~gPt~y~~~HiGHar 42 (461)
T 1li5_A 24 GMYVCGITVYDLCHIGHGR 42 (461)
T ss_dssp EEEECCCBSSSCCBHHHHH
T ss_pred eEEEcCCcCCCCCcccccH
Confidence 34555544 999999997
No 62
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=34.22 E-value=1.3e+02 Score=21.78 Aligned_cols=55 Identities=25% Similarity=0.235 Sum_probs=28.6
Q ss_pred cCCCCCHHHHHHHHHHHHHhc--CeEEEEEcCCC-cccc---cCCCCCCCCHHHHHHHHHH
Q 034677 29 TFDRLHDGHRLFLKASAELAR--DRIVVGVCDGP-MLTN---KQFAELIQPVDERMRNVEA 83 (87)
Q Consensus 29 tFDplH~GHl~ll~~a~~~~~--d~vivgv~~d~-~~~~---k~~~~~i~~~~~R~~~v~~ 83 (87)
|=+-+|.||+..+.....+-+ -.+++-+.+.. .+-+ +...++..+.++-.+.++.
T Consensus 56 Tg~sLHLGhl~~l~~~~~lQ~~G~~~~~lIaD~hal~~dp~g~~~~R~~l~~e~i~~n~~~ 116 (356)
T 2pid_A 56 TADSLHVGHLLALLGLFHLQRAGHNVIALVGGATARLGDPSGRTKEREALETERVRANARA 116 (356)
T ss_dssp SSSSCBHHHHHHHHHHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHH
T ss_pred CCCcccHHHHHHHHHHHHHHHCCCcEEEEEccceeeecCCcccccccccCCHHHHHHHHHH
Confidence 434499999877776665532 35566554432 1111 1112345566665555443
No 63
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=25.80 E-value=39 Score=25.71 Aligned_cols=20 Identities=25% Similarity=0.346 Sum_probs=14.1
Q ss_pred ccEEEEccc-C--CCCCHHHHHH
Q 034677 21 YGAVVLGGT-F--DRLHDGHRLF 40 (87)
Q Consensus 21 ~~~v~~gGt-F--DplH~GHl~l 40 (87)
-+..+++++ + +++|.||..-
T Consensus 18 ~~~~v~~~~py~ng~lHiGH~r~ 40 (560)
T 3h99_A 18 KKILVTCASPYANGSIHLGHMLE 40 (560)
T ss_dssp CEEEEEECCCBTTSCCBHHHHHH
T ss_pred CcEEEeCCCCCCCCCcchhhHHH
Confidence 445566664 4 6999999874
No 64
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=25.44 E-value=1.1e+02 Score=23.02 Aligned_cols=51 Identities=24% Similarity=0.225 Sum_probs=28.2
Q ss_pred cCCCCCHHHHHHHHHHHHHhc--CeEEEEE------cCCCcccccCCCCCCCCHHHHHHHHH
Q 034677 29 TFDRLHDGHRLFLKASAELAR--DRIVVGV------CDGPMLTNKQFAELIQPVDERMRNVE 82 (87)
Q Consensus 29 tFDplH~GHl~ll~~a~~~~~--d~vivgv------~~d~~~~~k~~~~~i~~~~~R~~~v~ 82 (87)
|=+-+|.||+..+.....+-+ -.+++-+ ++|+. +.. .++..+.++-.+.++
T Consensus 42 Tg~sLHLGhlv~l~~l~~lQ~~G~~~i~lIgD~ta~igdps-k~~--~R~~~~~e~i~~n~~ 100 (432)
T 2jan_A 42 TAPSLHAGHLVPLLTLRRFQRAGHRPIVLAGGATGMIGDPR-DVG--ERSLNEADTVAEWTE 100 (432)
T ss_dssp SSSSCBGGGHHHHHHHHHHHHTTCEEEEEECHHHHHHHCCC-CTT--TSGGGHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHHHCCCcEEEEEcCcEEEccCCc-ccc--cccCCCHHHHHHHHH
Confidence 444599999877766665532 3455555 34544 322 234455555555544
No 65
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=23.65 E-value=90 Score=22.76 Aligned_cols=27 Identities=11% Similarity=0.082 Sum_probs=16.9
Q ss_pred CCCHHHHHHHHHHHHHh--cCeEEEEEcC
Q 034677 32 RLHDGHRLFLKASAELA--RDRIVVGVCD 58 (87)
Q Consensus 32 plH~GHl~ll~~a~~~~--~d~vivgv~~ 58 (87)
.+|.||+.-+.....+. +-.+++-+.+
T Consensus 47 ~lHlG~~~~~l~~~~~~q~g~~~i~~I~D 75 (372)
T 1n3l_A 47 KPHVAYFVPMSKIADFLKAGCEVTILFAD 75 (372)
T ss_dssp CCBGGGHHHHHHHHHHHHTTCEEEEEECH
T ss_pred cccHHHHHHHHHHHHHHHCCCCEEEEEcC
Confidence 38999987665444332 2466776655
No 66
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=23.00 E-value=27 Score=27.03 Aligned_cols=16 Identities=31% Similarity=0.252 Sum_probs=11.6
Q ss_pred EEEccc--CCCCCHHHHH
Q 034677 24 VVLGGT--FDRLHDGHRL 39 (87)
Q Consensus 24 v~~gGt--FDplH~GHl~ 39 (87)
+.+.|- .+|+|.||+.
T Consensus 107 ve~~spn~~~~~HiGH~R 124 (592)
T 1iq0_A 107 VEHTSVNPNKELHVGHLR 124 (592)
T ss_dssp EECCCCCTTSCCBHHHHH
T ss_pred EEeeCCCCCCCCcchHHH
Confidence 344443 4899999998
No 67
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=22.88 E-value=1.4e+02 Score=18.20 Aligned_cols=29 Identities=10% Similarity=-0.127 Sum_probs=21.2
Q ss_pred CCcccEEEEcccCCCCCHHHHHHHHHHHHH
Q 034677 18 DNSYGAVVLGGTFDRLHDGHRLFLKASAEL 47 (87)
Q Consensus 18 ~~~~~~v~~gGtFDplH~GHl~ll~~a~~~ 47 (87)
+.+-.++++-|++++ ..|...+++.+..+
T Consensus 20 ~~~~~~i~~~G~~~~-~Kg~~~li~a~~~l 48 (177)
T 2f9f_A 20 KCYGDFWLSVNRIYP-EKRIELQLEVFKKL 48 (177)
T ss_dssp CCCCSCEEEECCSSG-GGTHHHHHHHHHHC
T ss_pred CCCCCEEEEEecccc-ccCHHHHHHHHHhC
Confidence 334456778888987 58988888877766
No 68
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=22.85 E-value=40 Score=25.08 Aligned_cols=17 Identities=29% Similarity=0.268 Sum_probs=11.6
Q ss_pred EEEEcc-cC--CCCCHHHHH
Q 034677 23 AVVLGG-TF--DRLHDGHRL 39 (87)
Q Consensus 23 ~v~~gG-tF--DplH~GHl~ 39 (87)
.++++. -+ +++|.||..
T Consensus 7 ~~i~~p~py~ng~lHiGH~~ 26 (497)
T 2csx_A 7 FYVTTPIYYVNDVPHLGHAY 26 (497)
T ss_dssp EEEEEEEEETTSCCCHHHHH
T ss_pred EEEecCCCCCCCccchhhHH
Confidence 344444 23 899999986
No 69
>1jg7_A BGT, DNA beta-glucosyltransferase; glycosyltransferase; HET: DNA UDP; 1.65A {Enterobacteria phage T4} SCOP: c.87.1.1 PDB: 1bgu_A* 1bgt_A* 1ixy_A* 1c3j_A* 1jej_A* 1jg6_A* 1j39_A* 1jiu_A* 1jiv_A* 1jix_A* 1m5r_A* 1nvk_A* 1qkj_A* 1sxp_A* 1sxq_A* 2bgt_A 2bgu_A* 1nzd_A* 1nzf_A*
Probab=22.46 E-value=44 Score=24.10 Aligned_cols=17 Identities=29% Similarity=0.583 Sum_probs=13.7
Q ss_pred CCCCcccEEEEcccCCC
Q 034677 16 SPDNSYGAVVLGGTFDR 32 (87)
Q Consensus 16 ~~~~~~~~v~~gGtFDp 32 (87)
.|..+++-+++||||--
T Consensus 176 ~~~~k~~d~iyggsfrs 192 (351)
T 1jg7_A 176 KPTKKTLDVIYGGSFRS 192 (351)
T ss_dssp CCCCCCEEEEEECCCGG
T ss_pred CCccceeeeeecccccc
Confidence 45577889999999964
No 70
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=22.22 E-value=1.2e+02 Score=22.99 Aligned_cols=31 Identities=23% Similarity=0.285 Sum_probs=18.3
Q ss_pred cCCCCCHHHHHHHHHHH---HHhcCeEEEEEcCC
Q 034677 29 TFDRLHDGHRLFLKASA---ELARDRIVVGVCDG 59 (87)
Q Consensus 29 tFDplH~GHl~ll~~a~---~~~~d~vivgv~~d 59 (87)
|=+.+|.||+.-+.... +.++..++|.+++.
T Consensus 101 TagsLHLGH~v~~~~l~~lQ~~~g~~v~I~IgD~ 134 (451)
T 3foc_A 101 SSGALHLGHLLPFIFTKYLQDAFKCYVVIQITDD 134 (451)
T ss_dssp CSSCCBHHHHHHHHHHHHHHHHHTCEEEEEECHH
T ss_pred CCCCccHHHHHHHHHHHHHHHccCceEEEEeeCc
Confidence 33679999987554222 22345677766554
No 71
>3djh_A Macrophage migration inhibitory factor; homotrimer, cytokine, inflammatory response, isomerase, phosphoprotein; 1.25A {Homo sapiens} SCOP: d.80.1.3 PDB: 1ca7_A* 1ljt_A* 2ooh_A* 2ooz_A* 3b9s_A* 2oow_A* 3ce4_A 3dji_A* 3ijg_A* 3ijj_A* 3smb_A* 3smc_A* 3u18_A* 4f2k_A* 1gd0_A* 1gcz_A* 3jsf_A* 3jsg_A* 3jtu_A* 3l5p_A* ...
Probab=21.59 E-value=38 Score=20.18 Aligned_cols=11 Identities=18% Similarity=0.446 Sum_probs=9.5
Q ss_pred EEEEcccCCCC
Q 034677 23 AVVLGGTFDRL 33 (87)
Q Consensus 23 ~v~~gGtFDpl 33 (87)
..+|||++||.
T Consensus 46 ~m~fgGs~~P~ 56 (114)
T 3djh_A 46 LMAFGGSSEPC 56 (114)
T ss_dssp EEEETTBCSSC
T ss_pred eEEEcCcCCCE
Confidence 57899999986
No 72
>3cex_A Uncharacterized protein; structural genomics, EF_3021, PSI-2, structure initiative, midwest center for structural genomic unknown function; 2.00A {Enterococcus faecalis}
Probab=20.48 E-value=39 Score=21.35 Aligned_cols=12 Identities=17% Similarity=0.540 Sum_probs=9.3
Q ss_pred CHHHHHHHHHHH
Q 034677 34 HDGHRLFLKASA 45 (87)
Q Consensus 34 H~GHl~ll~~a~ 45 (87)
|.||+.++++..
T Consensus 158 H~Gqa~~lRe~~ 169 (172)
T 3cex_A 158 HSGQAVYTRRLV 169 (172)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHh
Confidence 789998887654
No 73
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=20.32 E-value=2.4e+02 Score=20.01 Aligned_cols=53 Identities=21% Similarity=0.201 Sum_probs=27.7
Q ss_pred cCCCCCHHHHHHHHHHHHHhc--CeEEEEEcCCC-cccc---cCCCCCCCCHHHHHHHH
Q 034677 29 TFDRLHDGHRLFLKASAELAR--DRIVVGVCDGP-MLTN---KQFAELIQPVDERMRNV 81 (87)
Q Consensus 29 tFDplH~GHl~ll~~a~~~~~--d~vivgv~~d~-~~~~---k~~~~~i~~~~~R~~~v 81 (87)
|-+-+|.||+.-+.....+-+ ..+++.+.+-. .+-+ +...++..+.++-.+.+
T Consensus 43 Tg~slHlGh~l~l~~~~~lQ~~g~~~~~~i~D~~a~~~dp~g~~~~R~~l~~e~i~~n~ 101 (322)
T 2yxn_A 43 TADSLHLGHLVPLLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWV 101 (322)
T ss_dssp SSSSCBHHHHHHHHHHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHH
T ss_pred CCCcccHHHHHHHHHHHHHHHcCCcEEEEEccceeeecCCCCcccccccCCHHHHHHHH
Confidence 444499999887766665532 34555554432 1111 11124455666555554
No 74
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=20.06 E-value=34 Score=26.84 Aligned_cols=10 Identities=40% Similarity=0.474 Sum_probs=8.7
Q ss_pred CCCCCHHHHH
Q 034677 30 FDRLHDGHRL 39 (87)
Q Consensus 30 FDplH~GHl~ 39 (87)
.+|+|.||+.
T Consensus 131 ~~~~HiGH~R 140 (629)
T 2zue_A 131 TKPLHMGHAR 140 (629)
T ss_dssp TSCCBHHHHH
T ss_pred CCCCccchhH
Confidence 4789999997
Done!