BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034678
         (87 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O13622|MS116_SCHPO ATP-dependent RNA helicase mss116, mitochondrial
          OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
          GN=mss116 PE=3 SV=1
          Length = 535

 Score = 30.4 bits (67), Expect = 3.3,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 6/78 (7%)

Query: 1  MNAKGKAWIVAAIGAVEALKDQGFARWNYPLRSLKQHAETNLRSLVQANKLSSSSAMALS 60
          MN   K  I + +G     K QGF RWN  ++S +    + + S      LSS+   +LS
Sbjct: 1  MNISLKGAIFSTVGRFNLPKVQGFIRWNSTMKSQQPTLFSEVAS------LSSTFKNSLS 54

Query: 61 KVKDEKKIKESEESLRKV 78
          +   EK     +  L +V
Sbjct: 55 RAGFEKMTPVQQRVLNEV 72


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.312    0.123    0.355 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,159,753
Number of Sequences: 539616
Number of extensions: 657151
Number of successful extensions: 2663
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2657
Number of HSP's gapped (non-prelim): 9
length of query: 87
length of database: 191,569,459
effective HSP length: 57
effective length of query: 30
effective length of database: 160,811,347
effective search space: 4824340410
effective search space used: 4824340410
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)