BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>034684
MSETRPVPRRESPWGTPEGEHRQPKAHRCNDRAEDVIQACFEGNPFKTVPGPFKLFWQCM
RSKPGEEPTEPFTYLQLDPPKREVKLE

High Scoring Gene Products

Symbol, full name Information P value
AT1G05205 protein from Arabidopsis thaliana 3.3e-40

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  034684
        (87 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:505006100 - symbol:AT1G05205 "AT1G05205" speci...   428  3.3e-40   1


>TAIR|locus:505006100 [details] [associations]
            symbol:AT1G05205 "AT1G05205" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0009853 "photorespiration" evidence=RCA]
            EMBL:CP002684 GenomeReviews:CT485782_GR UniGene:At.10412
            UniGene:At.66937 EMBL:AY084452 EMBL:BT024538 IPI:IPI00517031
            RefSeq:NP_563730.1 STRING:Q8LG56 PaxDb:Q8LG56 PRIDE:Q8LG56
            EnsemblPlants:AT1G05205.1 GeneID:839266 KEGG:ath:AT1G05205
            TAIR:At1g05205 eggNOG:NOG276859 HOGENOM:HOG000272737
            InParanoid:Q8LG56 OMA:EGHREPK PhylomeDB:Q8LG56
            ProtClustDB:CLSN2687686 Genevestigator:Q8LG56 Uniprot:Q8LG56
        Length = 91

 Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
 Identities = 77/87 (88%), Positives = 81/87 (93%)

Query:     1 MSETRPVPRRESPWGTPEGEHRQPKAHRCNDRAEDVIQACFEGNPFKTVPGPFKLFWQCM 60
             MSETRPVPRRESPWG PEG HR+PKAHRCNDR EDVIQA FEGNPFKTVPGPFKLF++CM
Sbjct:     1 MSETRPVPRRESPWGLPEG-HREPKAHRCNDRVEDVIQALFEGNPFKTVPGPFKLFYRCM 59

Query:    61 RSKPGEEPTEPFTYLQLDPPKREVKLE 87
             RSKPGEEPTEPF YL L+PPKREVKLE
Sbjct:    60 RSKPGEEPTEPFKYLDLEPPKREVKLE 86


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.137   0.454    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       87        87   0.00091  102 3  12 22  0.38    30
                                                     29  0.48    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  516 (55 KB)
  Total size of DFA:  95 KB (2068 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  7.83u 0.18s 8.01t   Elapsed:  00:00:00
  Total cpu time:  7.83u 0.18s 8.01t   Elapsed:  00:00:00
  Start:  Thu May  9 23:12:49 2013   End:  Thu May  9 23:12:49 2013

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