Query 034684
Match_columns 87
No_of_seqs 21 out of 23
Neff 2.3
Searched_HMMs 29240
Date Mon Mar 25 08:33:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034684.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034684hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ytt_A Zinc finger protein 473 40.0 18 0.00061 17.7 1.9 17 15-31 1-17 (46)
2 2elv_A Zinc finger protein 406 34.7 14 0.00047 17.1 0.8 13 19-31 2-14 (36)
3 2epr_A POZ-, at HOOK-, and zin 32.3 18 0.00063 18.0 1.2 40 15-68 1-40 (48)
4 2eom_A ZFP-95, zinc finger pro 31.1 30 0.001 17.0 1.8 15 17-31 3-17 (46)
5 3lio_A Iron superoxide dismuta 30.8 18 0.00061 25.9 1.2 16 54-69 74-89 (192)
6 1p7a_A BF3, BKLF, kruppel-like 30.6 20 0.00067 16.5 1.0 12 20-31 5-16 (37)
7 2ep0_A Zinc finger protein 28 30.2 23 0.00079 17.2 1.3 16 16-31 2-17 (46)
8 2akf_A Coronin-1A; coiled coil 30.0 24 0.00081 19.8 1.4 10 30-39 22-31 (32)
9 2eon_A ZFP-95, zinc finger pro 29.3 35 0.0012 16.7 1.9 37 18-68 4-40 (46)
10 2eln_A Zinc finger protein 406 29.2 19 0.00064 18.8 0.9 12 19-30 2-13 (38)
11 2eps_A POZ-, at HOOK-, and zin 29.0 25 0.00084 18.1 1.3 17 15-31 1-17 (54)
12 2elr_A Zinc finger protein 406 28.4 28 0.00097 15.7 1.4 12 20-31 3-14 (36)
13 2epp_A POZ-, at HOOK-, and zin 28.3 32 0.0011 20.1 1.9 38 17-68 4-41 (66)
14 2yth_A Zinc finger protein 224 28.1 20 0.0007 17.5 0.8 10 21-30 35-44 (46)
15 2elq_A Zinc finger protein 406 28.0 21 0.00072 16.4 0.9 13 19-31 2-14 (36)
16 2enh_A Zinc finger protein 28 27.7 37 0.0013 16.5 1.9 37 18-68 4-40 (46)
17 3tqj_A Superoxide dismutase [F 27.1 23 0.00079 25.9 1.3 16 54-69 75-90 (210)
18 2epu_A Zinc finger protein 32; 26.4 27 0.00093 16.9 1.2 15 17-31 3-17 (45)
19 3js4_A Superoxide dismutase; n 26.3 24 0.00081 26.0 1.2 16 54-69 102-117 (227)
20 1bhi_A CRE-BP1, ATF-2; CRE bin 26.1 19 0.00064 16.8 0.5 10 21-30 1-10 (38)
21 2kiw_A INT protein; alpha, str 26.1 93 0.0032 17.4 3.6 55 32-86 48-104 (111)
22 2ytp_A Zinc finger protein 484 25.9 25 0.00084 17.2 0.9 10 21-30 35-44 (46)
23 2gpc_A Iron superoxide dismuta 25.4 26 0.00089 25.0 1.3 16 54-69 76-91 (194)
24 2ent_A Krueppel-like factor 15 25.4 32 0.0011 16.7 1.3 14 17-30 3-16 (48)
25 1fv5_A First zinc finger of U- 25.3 25 0.00086 18.3 0.9 12 20-31 2-13 (36)
26 3iuf_A Zinc finger protein UBI 25.1 20 0.00069 18.2 0.5 35 21-69 2-37 (48)
27 2elm_A Zinc finger protein 406 25.0 19 0.00063 17.0 0.3 12 20-31 3-14 (37)
28 1my6_A Iron (III) superoxide d 24.8 27 0.00093 25.0 1.3 16 54-69 80-95 (199)
29 1va1_A Transcription factor SP 24.5 23 0.0008 16.6 0.7 11 20-30 2-12 (37)
30 2elo_A Zinc finger protein 406 24.4 23 0.00079 16.2 0.6 12 20-31 3-14 (37)
31 1uer_A SOD, superoxide dismuta 24.4 28 0.00096 24.8 1.3 16 54-69 75-90 (191)
32 1srk_A Zinc finger protein ZFP 24.2 22 0.00076 16.1 0.5 10 21-30 2-11 (35)
33 2el6_A Zinc finger protein 268 24.1 34 0.0012 16.6 1.3 15 17-31 3-17 (46)
34 2khf_A PLNJ; anti-microbial, b 24.0 34 0.0012 18.3 1.3 12 51-62 1-12 (26)
35 2nyb_A Superoxide dismutase [F 23.9 29 0.00099 24.8 1.3 16 54-69 74-89 (192)
36 2em6_A Zinc finger protein 224 23.9 29 0.00099 16.9 1.0 10 21-30 35-44 (46)
37 3h1s_A Superoxide dismutase; S 23.8 27 0.00094 25.0 1.2 15 54-69 78-92 (195)
38 2yto_A Zinc finger protein 484 23.8 23 0.00078 17.3 0.5 9 22-30 36-44 (46)
39 1pl4_A Superoxide dismutase [M 23.8 29 0.00099 24.8 1.3 15 55-69 76-90 (198)
40 2elt_A Zinc finger protein 406 23.8 28 0.00095 15.7 0.8 11 20-30 3-13 (36)
41 1ids_A Iron superoxide dismuta 22.9 35 0.0012 24.6 1.6 15 55-69 78-92 (207)
42 2emi_A Zinc finger protein 484 22.9 29 0.001 16.8 0.9 10 21-30 35-44 (46)
43 2elx_A Zinc finger protein 406 22.8 24 0.00082 15.8 0.5 11 21-31 2-12 (35)
44 1dt0_A Superoxide dismutase; p 22.5 32 0.0011 24.7 1.3 17 53-69 73-89 (197)
45 1mng_A Manganese superoxide di 22.5 38 0.0013 24.3 1.7 16 54-69 84-99 (203)
46 2els_A Zinc finger protein 406 22.5 31 0.0011 15.7 0.9 11 20-30 3-13 (36)
47 2eoz_A Zinc finger protein 473 22.0 27 0.00092 17.0 0.6 8 23-30 37-44 (46)
48 2ytf_A Zinc finger protein 268 21.9 36 0.0012 16.4 1.1 10 21-30 35-44 (46)
49 3dc5_A Superoxide dismutase [M 21.7 32 0.0011 24.7 1.2 15 54-69 76-90 (195)
50 2em4_A Zinc finger protein 28 21.6 29 0.001 16.9 0.7 10 21-30 35-44 (46)
51 1xre_A SODA-2, superoxide dism 21.6 34 0.0012 25.0 1.3 16 54-69 93-108 (217)
52 4f2n_A Superoxide dismutase; s 21.5 29 0.001 25.7 0.9 16 54-69 109-124 (230)
53 2ep1_A Zinc finger protein 484 21.4 34 0.0012 16.5 0.9 10 21-30 35-44 (46)
54 2eq3_A Zinc finger protein 347 21.1 35 0.0012 16.4 0.9 10 21-30 35-44 (46)
55 2awp_A Iron super-oxide dismut 21.0 35 0.0012 24.4 1.2 16 54-69 75-90 (198)
56 3iez_A RAS GTPase-activating-l 20.9 17 0.00058 24.5 -0.4 24 28-51 75-98 (114)
57 2eq1_A Zinc finger protein 347 20.7 38 0.0013 16.4 1.0 10 21-30 35-44 (46)
58 4ffk_A Superoxide dismutase; o 20.6 36 0.0012 25.0 1.3 16 54-69 93-110 (223)
59 2em8_A Zinc finger protein 224 20.5 46 0.0016 16.1 1.3 14 18-31 4-17 (46)
60 2elp_A Zinc finger protein 406 20.4 36 0.0012 15.6 0.8 12 20-31 3-14 (37)
61 2yts_A Zinc finger protein 484 20.4 40 0.0014 16.2 1.1 10 21-30 35-44 (46)
62 2rcv_A Superoxide dismutase [M 20.3 38 0.0013 24.3 1.3 16 54-69 83-98 (202)
63 2emg_A Zinc finger protein 484 20.3 39 0.0014 16.3 1.0 10 21-30 35-44 (46)
64 1coj_A Protein (superoxide dis 20.1 27 0.00094 25.2 0.5 16 54-69 82-97 (212)
No 1
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=39.96 E-value=18 Score=17.73 Aligned_cols=17 Identities=18% Similarity=0.466 Sum_probs=12.7
Q ss_pred CCCCCCcCCCCcCccch
Q 034684 15 GTPEGEHRQPKAHRCND 31 (87)
Q Consensus 15 g~~~~~~~~~rphRCND 31 (87)
|-+...|.+.++|.|+.
T Consensus 1 g~~~~~h~~~k~~~C~~ 17 (46)
T 2ytt_A 1 GSSGSSGEGEKPYQCSE 17 (46)
T ss_dssp CCCSSSCSCCCTTCCSS
T ss_pred CCCCCCCCCCCCeeCCC
Confidence 44566788899999973
No 2
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.74 E-value=14 Score=17.06 Aligned_cols=13 Identities=8% Similarity=0.020 Sum_probs=9.6
Q ss_pred CCcCCCCcCccch
Q 034684 19 GEHRQPKAHRCND 31 (87)
Q Consensus 19 ~~~~~~rphRCND 31 (87)
..|.+.+||.|+.
T Consensus 2 ~~h~~~k~~~C~~ 14 (36)
T 2elv_A 2 SSGSSGLLYDCHI 14 (36)
T ss_dssp CCSCCCCCEECSS
T ss_pred CCCCCCCCeECCC
Confidence 4567788999873
No 3
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=32.30 E-value=18 Score=18.01 Aligned_cols=40 Identities=25% Similarity=0.366 Sum_probs=23.7
Q ss_pred CCCCCCcCCCCcCccchhHHHHHHHHhhCCCCcccCchHHHHHHHHhcCCCCCC
Q 034684 15 GTPEGEHRQPKAHRCNDRAEDVIQACFEGNPFKTVPGPFKLFWQCMRSKPGEEP 68 (87)
Q Consensus 15 g~~~~~~~~~rphRCNDR~eDvlqa~fegn~~~tvp~~fkLfwrCmRSk~GeEP 68 (87)
|-+...+...++|.|+. .|-.|. ....|.+=|+...|+.|
T Consensus 1 g~~~~~~~~~k~~~C~~----------C~k~f~----~~~~L~~H~~~H~~~k~ 40 (48)
T 2epr_A 1 GSSGSSGRTRKQVACEI----------CGKIFR----DVYHLNRHKLSHSGEKP 40 (48)
T ss_dssp CCCCSCCCCCCSEEETT----------TTEEES----SHHHHHHHGGGSCSCCC
T ss_pred CCCCCCCCCCcCeeCCC----------CCcccC----CHHHHHHHHHhcCCCCC
Confidence 34566788889999973 233332 23344555666666654
No 4
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.14 E-value=30 Score=16.96 Aligned_cols=15 Identities=27% Similarity=0.643 Sum_probs=11.0
Q ss_pred CCCCcCCCCcCccch
Q 034684 17 PEGEHRQPKAHRCND 31 (87)
Q Consensus 17 ~~~~~~~~rphRCND 31 (87)
....|.+.++|.|+.
T Consensus 3 ~~~~h~~~k~~~C~~ 17 (46)
T 2eom_A 3 SGSSGHGERGHRCSD 17 (46)
T ss_dssp CCCCCCCCSSCCCSS
T ss_pred CCCCCCCCCCcCCCC
Confidence 345677889999974
No 5
>3lio_A Iron superoxide dismutase; cold adaptation, flexibility, thermal stability, psychrophilic protein, metal-binding, oxidoreduc; HET: TRE; 1.50A {Pseudoalteromonas haloplanktis} PDB: 3lj9_A* 3ljf_A* 3sdp_A
Probab=30.84 E-value=18 Score=25.91 Aligned_cols=16 Identities=25% Similarity=0.839 Sum_probs=12.9
Q ss_pred HHHHHHHhcCCCCCCC
Q 034684 54 KLFWQCMRSKPGEEPT 69 (87)
Q Consensus 54 kLfwrCmRSk~GeEP~ 69 (87)
.+||.||....|.+|.
T Consensus 74 ~~fw~~L~p~ggg~P~ 89 (192)
T 3lio_A 74 TFYWNSLSPNGGGAPT 89 (192)
T ss_dssp HHHHHTBCTTCCSSCC
T ss_pred HHHHHHcCCCCCCCCC
Confidence 4799999887777774
No 6
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=30.56 E-value=20 Score=16.50 Aligned_cols=12 Identities=25% Similarity=0.429 Sum_probs=9.3
Q ss_pred CcCCCCcCccch
Q 034684 20 EHRQPKAHRCND 31 (87)
Q Consensus 20 ~~~~~rphRCND 31 (87)
.|.+.||+.|+.
T Consensus 5 ~h~~~k~~~C~~ 16 (37)
T 1p7a_A 5 GSTGIKPFQCPD 16 (37)
T ss_dssp TTCCSSSBCCTT
T ss_pred cCCCCCCccCCC
Confidence 467789999974
No 7
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=30.23 E-value=23 Score=17.21 Aligned_cols=16 Identities=13% Similarity=0.281 Sum_probs=11.4
Q ss_pred CCCCCcCCCCcCccch
Q 034684 16 TPEGEHRQPKAHRCND 31 (87)
Q Consensus 16 ~~~~~~~~~rphRCND 31 (87)
-....|.+.++|.|+.
T Consensus 2 s~~~~h~~~~~~~C~~ 17 (46)
T 2ep0_A 2 SSGSSGTGEKPYKCDV 17 (46)
T ss_dssp CCCCSSTTCCSEECSS
T ss_pred CCCCCCCCCCCeeCcc
Confidence 3455677888999864
No 8
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=29.99 E-value=24 Score=19.81 Aligned_cols=10 Identities=50% Similarity=0.657 Sum_probs=8.3
Q ss_pred chhHHHHHHH
Q 034684 30 NDRAEDVIQA 39 (87)
Q Consensus 30 NDR~eDvlqa 39 (87)
-||+||-+||
T Consensus 22 ~drle~tvqa 31 (32)
T 2akf_A 22 LDRLEETVQA 31 (32)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 3899999886
No 9
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.31 E-value=35 Score=16.69 Aligned_cols=37 Identities=22% Similarity=0.337 Sum_probs=22.0
Q ss_pred CCCcCCCCcCccchhHHHHHHHHhhCCCCcccCchHHHHHHHHhcCCCCCC
Q 034684 18 EGEHRQPKAHRCNDRAEDVIQACFEGNPFKTVPGPFKLFWQCMRSKPGEEP 68 (87)
Q Consensus 18 ~~~~~~~rphRCNDR~eDvlqa~fegn~~~tvp~~fkLfwrCmRSk~GeEP 68 (87)
...|.+.|+|.|+. .|-.|.. ...|.+=++...|+.|
T Consensus 4 ~~~H~~~k~~~C~~----------C~k~f~~----~~~L~~H~~~H~~~k~ 40 (46)
T 2eon_A 4 GSSGTGEKPYKCQV----------CGKAFRV----SSHLVQHHSVHSGERP 40 (46)
T ss_dssp SSSCSSCCSCBCSS----------SCCBCSS----HHHHHHHTTTTTSCCS
T ss_pred CCCCCCCcccCCCC----------CCcccCc----HHHHHHHHHhcCCCCC
Confidence 45677889999973 4544433 2344445666666544
No 10
>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.22 E-value=19 Score=18.77 Aligned_cols=12 Identities=8% Similarity=0.160 Sum_probs=9.1
Q ss_pred CCcCCCCcCccc
Q 034684 19 GEHRQPKAHRCN 30 (87)
Q Consensus 19 ~~~~~~rphRCN 30 (87)
+.+.+.|||.|+
T Consensus 2 ~~~~gekp~~C~ 13 (38)
T 2eln_A 2 SSGSSGILLKCP 13 (38)
T ss_dssp CCSSCCCCEECS
T ss_pred CCCCCCCCCCCC
Confidence 456678999996
No 11
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=29.03 E-value=25 Score=18.12 Aligned_cols=17 Identities=18% Similarity=0.300 Sum_probs=12.9
Q ss_pred CCCCCCcCCCCcCccch
Q 034684 15 GTPEGEHRQPKAHRCND 31 (87)
Q Consensus 15 g~~~~~~~~~rphRCND 31 (87)
|.+...+.+.|+|.|+.
T Consensus 1 g~~~~~~~~~k~~~C~~ 17 (54)
T 2eps_A 1 GSSGSSGSVGKPYICQS 17 (54)
T ss_dssp CCCCCCCCSSCCEECSS
T ss_pred CCCCCCCCCCCCeECCC
Confidence 44567788889999974
No 12
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.41 E-value=28 Score=15.71 Aligned_cols=12 Identities=25% Similarity=0.432 Sum_probs=9.0
Q ss_pred CcCCCCcCccch
Q 034684 20 EHRQPKAHRCND 31 (87)
Q Consensus 20 ~~~~~rphRCND 31 (87)
.|.+.++|.|+.
T Consensus 3 ~h~~~~~~~C~~ 14 (36)
T 2elr_A 3 SGSSGKTHLCDM 14 (36)
T ss_dssp CCCCCSSCBCTT
T ss_pred CCCCCCCeecCc
Confidence 466778999973
No 13
>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=28.28 E-value=32 Score=20.05 Aligned_cols=38 Identities=13% Similarity=0.047 Sum_probs=25.2
Q ss_pred CCCCcCCCCcCccchhHHHHHHHHhhCCCCcccCchHHHHHHHHhcCCCCCC
Q 034684 17 PEGEHRQPKAHRCNDRAEDVIQACFEGNPFKTVPGPFKLFWQCMRSKPGEEP 68 (87)
Q Consensus 17 ~~~~~~~~rphRCNDR~eDvlqa~fegn~~~tvp~~fkLfwrCmRSk~GeEP 68 (87)
..+.+++.|||.|+. +|-.|.. ...|.+=||...|++.
T Consensus 4 ~~~~~~~ekpy~C~~----------CgK~F~~----~s~L~~H~r~Htg~~~ 41 (66)
T 2epp_A 4 GSSGLREAGILPCGL----------CGKVFTD----ANRLRQHEAQHGVTSL 41 (66)
T ss_dssp CSCSCCCCCCCCCTT----------TCCCCSC----HHHHHHHHHHHTTTSC
T ss_pred CCCCCCCccCcCCCC----------CCCccCC----HHHHHhhhhhhCCCcc
Confidence 346688999999984 5666643 2345566777777643
No 14
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.08 E-value=20 Score=17.51 Aligned_cols=10 Identities=20% Similarity=0.149 Sum_probs=5.7
Q ss_pred cCCCCcCccc
Q 034684 21 HRQPKAHRCN 30 (87)
Q Consensus 21 ~~~~rphRCN 30 (87)
|.+.+||.|+
T Consensus 35 H~~~k~~~C~ 44 (46)
T 2yth_A 35 HTGEKPSGPS 44 (46)
T ss_dssp GTTCCCSSCC
T ss_pred cCCCCCCCCC
Confidence 4455666665
No 15
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.02 E-value=21 Score=16.35 Aligned_cols=13 Identities=15% Similarity=0.312 Sum_probs=9.7
Q ss_pred CCcCCCCcCccch
Q 034684 19 GEHRQPKAHRCND 31 (87)
Q Consensus 19 ~~~~~~rphRCND 31 (87)
..|.+.+||.|+.
T Consensus 2 ~~h~~~k~~~C~~ 14 (36)
T 2elq_A 2 SSGSSGKPFKCSL 14 (36)
T ss_dssp CSSCCCCSEECSS
T ss_pred CCCCCCCCccCCC
Confidence 3567788999974
No 16
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.75 E-value=37 Score=16.48 Aligned_cols=37 Identities=22% Similarity=0.283 Sum_probs=22.2
Q ss_pred CCCcCCCCcCccchhHHHHHHHHhhCCCCcccCchHHHHHHHHhcCCCCCC
Q 034684 18 EGEHRQPKAHRCNDRAEDVIQACFEGNPFKTVPGPFKLFWQCMRSKPGEEP 68 (87)
Q Consensus 18 ~~~~~~~rphRCNDR~eDvlqa~fegn~~~tvp~~fkLfwrCmRSk~GeEP 68 (87)
...|.+.+++.|+. .|-.|... ..|.+=++...|+-|
T Consensus 4 ~~~h~~~k~~~C~~----------C~k~F~~~----~~L~~H~~~H~~~k~ 40 (46)
T 2enh_A 4 GSSGTGEKPYECDV----------CRKAFSHH----ASLTQHQRVHSGEKP 40 (46)
T ss_dssp CCCCCCSSSCBCTT----------TCCBCSSS----HHHHHHGGGSCCSCC
T ss_pred CCCcCCCCCcCCCC----------cCchhCCH----HHHHHHHHHhCCCCC
Confidence 44677889999973 45555332 334445666666654
No 17
>3tqj_A Superoxide dismutase [FE]; oxidoreductase; 2.00A {Coxiella burnetii}
Probab=27.08 E-value=23 Score=25.88 Aligned_cols=16 Identities=31% Similarity=1.147 Sum_probs=13.0
Q ss_pred HHHHHHHhcCCCCCCC
Q 034684 54 KLFWQCMRSKPGEEPT 69 (87)
Q Consensus 54 kLfwrCmRSk~GeEP~ 69 (87)
.+||.||....|.+|.
T Consensus 75 ~~Fw~~L~P~ggg~P~ 90 (210)
T 3tqj_A 75 TFYWHCMSPDGGGDPS 90 (210)
T ss_dssp HHHHHTBCTTCCSCCC
T ss_pred HHHHHhcCCCCCCCCC
Confidence 4799999987777775
No 18
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.41 E-value=27 Score=16.94 Aligned_cols=15 Identities=13% Similarity=0.304 Sum_probs=10.9
Q ss_pred CCCCcCCCCcCccch
Q 034684 17 PEGEHRQPKAHRCND 31 (87)
Q Consensus 17 ~~~~~~~~rphRCND 31 (87)
+...|.+.|++.|+.
T Consensus 3 ~~~~h~~~k~~~C~~ 17 (45)
T 2epu_A 3 SGSSGTGQKPFECTH 17 (45)
T ss_dssp CCCCCCSCCSEEETT
T ss_pred CCCCCCCCcCccCCC
Confidence 345677889999974
No 19
>3js4_A Superoxide dismutase; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.95A {Anaplasma phagocytophilum}
Probab=26.25 E-value=24 Score=25.99 Aligned_cols=16 Identities=31% Similarity=0.949 Sum_probs=13.1
Q ss_pred HHHHHHHhcCCCCCCC
Q 034684 54 KLFWQCMRSKPGEEPT 69 (87)
Q Consensus 54 kLfwrCmRSk~GeEP~ 69 (87)
.+||.||....|.+|.
T Consensus 102 s~FW~~L~P~ggg~P~ 117 (227)
T 3js4_A 102 DFYWQSMKPNGGGNPP 117 (227)
T ss_dssp HHHHHTBCTTCCSSCC
T ss_pred HHHHHhcCCCCCCCCC
Confidence 5799999987777775
No 20
>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=26.12 E-value=19 Score=16.75 Aligned_cols=10 Identities=20% Similarity=0.398 Sum_probs=7.0
Q ss_pred cCCCCcCccc
Q 034684 21 HRQPKAHRCN 30 (87)
Q Consensus 21 ~~~~rphRCN 30 (87)
|.+.||+.|+
T Consensus 1 H~~~k~~~C~ 10 (38)
T 1bhi_A 1 MSDDKPFLCT 10 (38)
T ss_dssp CTTCCCEECC
T ss_pred CCCCcceECC
Confidence 3456788886
No 21
>2kiw_A INT protein; alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus haemolyticus JCSC1435}
Probab=26.10 E-value=93 Score=17.40 Aligned_cols=55 Identities=9% Similarity=-0.070 Sum_probs=31.2
Q ss_pred hHHHHHHHHhhCCCCcccCchHHHHHHHHhc--CCCCCCCCcccccCCCCCcccccC
Q 034684 32 RAEDVIQACFEGNPFKTVPGPFKLFWQCMRS--KPGEEPTEPFTYLQLDPPKREVKL 86 (87)
Q Consensus 32 R~eDvlqa~fegn~~~tvp~~fkLfwrCmRS--k~GeEP~dpy~~L~l~pp~r~~~~ 86 (87)
-+++++..+..+-...|+-..+..+-++++- +.|--...|+..+.++..++.+.+
T Consensus 48 ~i~~~~~~l~~~~s~~t~~~~~~~lr~~~~~A~~~~~i~~nP~~~i~~pk~~~~~~~ 104 (111)
T 2kiw_A 48 DYQRFVDDISAQYSKNYVDSIVASTNMIFKYAYDTRLIKAMPSEGIKRPKKKVSVEL 104 (111)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTSCSCCTTTTCCCCSCCCCCCC
T ss_pred HHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHHHHhCChhhCccccCCCCCceeeeec
Confidence 4566666666665666655555544444332 245556677776666655555554
No 22
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.88 E-value=25 Score=17.19 Aligned_cols=10 Identities=20% Similarity=0.149 Sum_probs=5.8
Q ss_pred cCCCCcCccc
Q 034684 21 HRQPKAHRCN 30 (87)
Q Consensus 21 ~~~~rphRCN 30 (87)
|.+.|||.|+
T Consensus 35 H~~~k~~~C~ 44 (46)
T 2ytp_A 35 HTGEKPSGPS 44 (46)
T ss_dssp TSCCCCCSSC
T ss_pred hCCCCCCCCC
Confidence 4455666665
No 23
>2gpc_A Iron superoxide dismutase; alpha+beta structure, oxidoreductase; 1.90A {Trypanosoma cruzi} PDB: 3esf_A
Probab=25.40 E-value=26 Score=25.03 Aligned_cols=16 Identities=38% Similarity=0.924 Sum_probs=12.5
Q ss_pred HHHHHHHhcCCCCCCC
Q 034684 54 KLFWQCMRSKPGEEPT 69 (87)
Q Consensus 54 kLfwrCmRSk~GeEP~ 69 (87)
.+||.||.-..|.+|.
T Consensus 76 ~~fw~~L~P~gg~~P~ 91 (194)
T 2gpc_A 76 TFYWESMCPNGGGEPT 91 (194)
T ss_dssp HHHHHTBCTTCCSCCC
T ss_pred HHHHHhcCCCCCCCCC
Confidence 5799999876676774
No 24
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.38 E-value=32 Score=16.66 Aligned_cols=14 Identities=14% Similarity=0.285 Sum_probs=10.5
Q ss_pred CCCCcCCCCcCccc
Q 034684 17 PEGEHRQPKAHRCN 30 (87)
Q Consensus 17 ~~~~~~~~rphRCN 30 (87)
....|.+.|++.|+
T Consensus 3 ~~~~H~~~k~~~C~ 16 (48)
T 2ent_A 3 SGSSGTGEKPFACT 16 (48)
T ss_dssp CCCSSCCCCCEECC
T ss_pred CCCCcCCCCCeECC
Confidence 34567788999986
No 25
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B
Probab=25.31 E-value=25 Score=18.28 Aligned_cols=12 Identities=17% Similarity=0.285 Sum_probs=9.1
Q ss_pred CcCCCCcCccch
Q 034684 20 EHRQPKAHRCND 31 (87)
Q Consensus 20 ~~~~~rphRCND 31 (87)
...+.|||.|+.
T Consensus 2 ~~~gekp~~C~~ 13 (36)
T 1fv5_A 2 SLLKPARFMCLP 13 (36)
T ss_dssp CSSSCCCCEETT
T ss_pred CCCCccCeECCC
Confidence 456788999974
No 26
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}
Probab=25.13 E-value=20 Score=18.24 Aligned_cols=35 Identities=20% Similarity=0.151 Sum_probs=20.1
Q ss_pred cCCCCcCccchhHHHHHHHHhhCCCCcccCchHHHHHHHHh-cCCCCCCC
Q 034684 21 HRQPKAHRCNDRAEDVIQACFEGNPFKTVPGPFKLFWQCMR-SKPGEEPT 69 (87)
Q Consensus 21 ~~~~rphRCNDR~eDvlqa~fegn~~~tvp~~fkLfwrCmR-Sk~GeEP~ 69 (87)
|.+.|||.|+. +|-.|. ....|.+-|+ ...|+++.
T Consensus 2 Ht~~kp~~C~~----------C~k~F~----~~~~L~~H~~~~H~~e~~~ 37 (48)
T 3iuf_A 2 EDRDKPYACDI----------CGKRYK----NRPGLSYHYAHSHLAEEEG 37 (48)
T ss_dssp CTTTSCEECTT----------TCCEES----SHHHHHHHHHHSSCC----
T ss_pred CCCCcCEECCC----------cCcccC----CHHHHHHHhhhhcCCCCCC
Confidence 66789999973 455553 2344566677 77776654
No 27
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.99 E-value=19 Score=16.99 Aligned_cols=12 Identities=8% Similarity=0.166 Sum_probs=9.0
Q ss_pred CcCCCCcCccch
Q 034684 20 EHRQPKAHRCND 31 (87)
Q Consensus 20 ~~~~~rphRCND 31 (87)
.|.+.|||.|+.
T Consensus 3 ~H~~~k~~~C~~ 14 (37)
T 2elm_A 3 SGSSGHLYYCSQ 14 (37)
T ss_dssp SSSSSCEEECSS
T ss_pred ccCCCcCeECCC
Confidence 366788999973
No 28
>1my6_A Iron (III) superoxide dismutase; iron speroxide dismutase, thermophIle, reactive oxygen species, cyanobacteria, SOD, fesod; 1.60A {Thermosynechococcus elongatus} SCOP: a.2.11.1 d.44.1.1
Probab=24.81 E-value=27 Score=25.03 Aligned_cols=16 Identities=31% Similarity=0.860 Sum_probs=12.4
Q ss_pred HHHHHHHhcCCCCCCC
Q 034684 54 KLFWQCMRSKPGEEPT 69 (87)
Q Consensus 54 kLfwrCmRSk~GeEP~ 69 (87)
.+||.||.-..|.+|.
T Consensus 80 ~~fw~~L~P~gg~~P~ 95 (199)
T 1my6_A 80 TFFWNSLKPGGGGVPT 95 (199)
T ss_dssp HHHHHTBCTTCCSCCC
T ss_pred HHHHHHhccCCCCCCC
Confidence 5799999876676774
No 29
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}
Probab=24.54 E-value=23 Score=16.61 Aligned_cols=11 Identities=27% Similarity=0.631 Sum_probs=8.3
Q ss_pred CcCCCCcCccc
Q 034684 20 EHRQPKAHRCN 30 (87)
Q Consensus 20 ~~~~~rphRCN 30 (87)
++.+.|||.|+
T Consensus 2 ~~~~~k~~~C~ 12 (37)
T 1va1_A 2 DPGKKKQHICH 12 (37)
T ss_dssp CSSSCCCEECC
T ss_pred CCCCCCCCCCC
Confidence 35677889886
No 30
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.42 E-value=23 Score=16.24 Aligned_cols=12 Identities=8% Similarity=0.177 Sum_probs=8.9
Q ss_pred CcCCCCcCccch
Q 034684 20 EHRQPKAHRCND 31 (87)
Q Consensus 20 ~~~~~rphRCND 31 (87)
.|.+.+||.|+.
T Consensus 3 ~h~~~k~~~C~~ 14 (37)
T 2elo_A 3 SGSSGRSYSCPV 14 (37)
T ss_dssp CCCCCCCCEETT
T ss_pred CCCCCCCcCCCC
Confidence 366788999973
No 31
>1uer_A SOD, superoxide dismutase; metal-specific, cambialistic, oxidoreductase; 1.60A {Porphyromonas gingivalis} SCOP: a.2.11.1 d.44.1.1 PDB: 1qnn_A 1ues_A
Probab=24.40 E-value=28 Score=24.81 Aligned_cols=16 Identities=25% Similarity=0.617 Sum_probs=12.5
Q ss_pred HHHHHHHhcCCCCCCC
Q 034684 54 KLFWQCMRSKPGEEPT 69 (87)
Q Consensus 54 kLfwrCmRSk~GeEP~ 69 (87)
.+||.||....|.+|.
T Consensus 75 ~~fw~~L~P~gg~~P~ 90 (191)
T 1uer_A 75 NLYFTQFRPGKGGAPK 90 (191)
T ss_dssp HHHHHTBCTTCCSCCC
T ss_pred HHHHHhcCCCCCCCCC
Confidence 5899999876676774
No 32
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=24.21 E-value=22 Score=16.08 Aligned_cols=10 Identities=10% Similarity=0.358 Sum_probs=7.5
Q ss_pred cCCCCcCccc
Q 034684 21 HRQPKAHRCN 30 (87)
Q Consensus 21 ~~~~rphRCN 30 (87)
|.+.|++.|+
T Consensus 2 H~~~k~~~C~ 11 (35)
T 1srk_A 2 SSGKRPFVCR 11 (35)
T ss_dssp CSCCSCEECS
T ss_pred CCCCcCeeCC
Confidence 5567888887
No 33
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}
Probab=24.11 E-value=34 Score=16.64 Aligned_cols=15 Identities=7% Similarity=0.231 Sum_probs=10.7
Q ss_pred CCCCcCCCCcCccch
Q 034684 17 PEGEHRQPKAHRCND 31 (87)
Q Consensus 17 ~~~~~~~~rphRCND 31 (87)
....|.+.+++.|+.
T Consensus 3 h~~~h~~~k~~~C~~ 17 (46)
T 2el6_A 3 SGSSGAGVNPYKCSQ 17 (46)
T ss_dssp SCCSSCCCCSEECSS
T ss_pred CCCCCCCCCCeECCC
Confidence 345677888898863
No 34
>2khf_A PLNJ; anti-microbial, bacteriocin, peptide, two-peptide, antimicrobial protein; NMR {Lactobacillus plantarum} PDB: 2khg_A
Probab=23.98 E-value=34 Score=18.30 Aligned_cols=12 Identities=42% Similarity=1.104 Sum_probs=9.6
Q ss_pred chHHHHHHHHhc
Q 034684 51 GPFKLFWQCMRS 62 (87)
Q Consensus 51 ~~fkLfwrCmRS 62 (87)
++||+||.-+|.
T Consensus 1 gawknfwsslrk 12 (26)
T 2khf_A 1 GAWKNFWSSLRK 12 (26)
T ss_dssp CCHHHHHHHHHH
T ss_pred CcHHHHHHHHHh
Confidence 478999988874
No 35
>2nyb_A Superoxide dismutase [FE]; iron superoxide dismutase Q69E, fesod, oxidoreductase; 1.10A {Escherichia coli} SCOP: a.2.11.1 d.44.1.1 PDB: 2bkb_A 1isa_A 1isb_A 1isc_A 1za5_A 2w7w_A
Probab=23.93 E-value=29 Score=24.75 Aligned_cols=16 Identities=38% Similarity=1.182 Sum_probs=12.5
Q ss_pred HHHHHHHhcCCCCCCC
Q 034684 54 KLFWQCMRSKPGEEPT 69 (87)
Q Consensus 54 kLfwrCmRSk~GeEP~ 69 (87)
.+||.||.-..|.+|.
T Consensus 74 ~~fw~~L~P~gg~~P~ 89 (192)
T 2nyb_A 74 TFYWNCLAPNAGGEPT 89 (192)
T ss_dssp HHHHHTBCTTCCSCCC
T ss_pred HHHHHHhccCCCCCCC
Confidence 5799999876666774
No 36
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.90 E-value=29 Score=16.91 Aligned_cols=10 Identities=20% Similarity=0.149 Sum_probs=5.8
Q ss_pred cCCCCcCccc
Q 034684 21 HRQPKAHRCN 30 (87)
Q Consensus 21 ~~~~rphRCN 30 (87)
|.+.|||.|+
T Consensus 35 H~~~k~~~C~ 44 (46)
T 2em6_A 35 HTGEKPSGPS 44 (46)
T ss_dssp TSSSCCCCTT
T ss_pred cCCCCCCCCC
Confidence 4455666665
No 37
>3h1s_A Superoxide dismutase; SOBD, csgid, oxidoreductase, structura genomics; 1.90A {Francisella tularensis subsp}
Probab=23.84 E-value=27 Score=24.98 Aligned_cols=15 Identities=20% Similarity=0.913 Sum_probs=11.9
Q ss_pred HHHHHHHhcCCCCCCC
Q 034684 54 KLFWQCMRSKPGEEPT 69 (87)
Q Consensus 54 kLfwrCmRSk~GeEP~ 69 (87)
.+||.||..+.| +|.
T Consensus 78 ~~fw~~L~P~gg-~P~ 92 (195)
T 3h1s_A 78 TFYWNCLTPNKT-EAS 92 (195)
T ss_dssp HHHHHTBCSSCC-CCC
T ss_pred HHHHHhcCCCCC-CCC
Confidence 579999987766 664
No 38
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.81 E-value=23 Score=17.32 Aligned_cols=9 Identities=0% Similarity=-0.116 Sum_probs=4.6
Q ss_pred CCCCcCccc
Q 034684 22 RQPKAHRCN 30 (87)
Q Consensus 22 ~~~rphRCN 30 (87)
.+.+||.|+
T Consensus 36 ~~~k~~~C~ 44 (46)
T 2yto_A 36 TGERHSGPS 44 (46)
T ss_dssp TCCCBTTTB
T ss_pred CCCCCCCCC
Confidence 344555554
No 39
>1pl4_A Superoxide dismutase [MN], mitochondrial; oxidoreductase; 1.47A {Homo sapiens} SCOP: a.2.11.1 d.44.1.1 PDB: 1n0j_A 1luv_A 1msd_A 2adq_B 1pm9_A 3c3t_A 1ap6_A 1ap5_A 1var_A 3c3s_A 1em1_A 1qnm_A 1zte_A 1luw_A 2gds_A 1zuq_A 2adp_A* 1zsp_A 1n0n_A 2p4k_A ...
Probab=23.80 E-value=29 Score=24.79 Aligned_cols=15 Identities=33% Similarity=0.922 Sum_probs=11.8
Q ss_pred HHHHHHhcCCCCCCC
Q 034684 55 LFWQCMRSKPGEEPT 69 (87)
Q Consensus 55 LfwrCmRSk~GeEP~ 69 (87)
+||.||.-..|.+|.
T Consensus 76 ~fw~~L~P~ggg~P~ 90 (198)
T 1pl4_A 76 IFWTNLSPNGGGEPK 90 (198)
T ss_dssp HHHHTBCTTCCSCCC
T ss_pred HHHHhcCCCCCCCCC
Confidence 899999876666664
No 40
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.76 E-value=28 Score=15.74 Aligned_cols=11 Identities=18% Similarity=0.359 Sum_probs=8.4
Q ss_pred CcCCCCcCccc
Q 034684 20 EHRQPKAHRCN 30 (87)
Q Consensus 20 ~~~~~rphRCN 30 (87)
.|.+.+||.|+
T Consensus 3 ~h~~~k~~~C~ 13 (36)
T 2elt_A 3 SGSSGKPYKCP 13 (36)
T ss_dssp CSCCCCSEECS
T ss_pred CCCCCCCCCCC
Confidence 46677889987
No 41
>1ids_A Iron superoxide dismutase; 2.00A {Mycobacterium tuberculosis} SCOP: a.2.11.1 d.44.1.1 PDB: 1gn2_A 1gn3_A 1gn6_A 1gn4_A
Probab=22.91 E-value=35 Score=24.61 Aligned_cols=15 Identities=27% Similarity=0.957 Sum_probs=11.7
Q ss_pred HHHHHHhcCCCCCCC
Q 034684 55 LFWQCMRSKPGEEPT 69 (87)
Q Consensus 55 LfwrCmRSk~GeEP~ 69 (87)
+||.||.-..|.+|.
T Consensus 78 ~fw~~L~P~gg~~P~ 92 (207)
T 1ids_A 78 IWWKNLSPNGGDKPT 92 (207)
T ss_dssp HHHHHBCTTCCSCCC
T ss_pred HHHHhcCCCCCCCCC
Confidence 899999876566664
No 42
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.90 E-value=29 Score=16.81 Aligned_cols=10 Identities=30% Similarity=0.311 Sum_probs=5.4
Q ss_pred cCCCCcCccc
Q 034684 21 HRQPKAHRCN 30 (87)
Q Consensus 21 ~~~~rphRCN 30 (87)
|.+.+|+.|+
T Consensus 35 H~~~k~~~C~ 44 (46)
T 2emi_A 35 HRGEKPSGPS 44 (46)
T ss_dssp GCSCCCCSCC
T ss_pred hCCCCCCCCC
Confidence 3445566664
No 43
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=22.75 E-value=24 Score=15.79 Aligned_cols=11 Identities=9% Similarity=0.081 Sum_probs=7.8
Q ss_pred cCCCCcCccch
Q 034684 21 HRQPKAHRCND 31 (87)
Q Consensus 21 ~~~~rphRCND 31 (87)
|.+.++|.|+.
T Consensus 2 h~~~k~~~C~~ 12 (35)
T 2elx_A 2 SSGSSGYVCAL 12 (35)
T ss_dssp CCCCCSEECSS
T ss_pred CCCCCCeECCC
Confidence 45678888863
No 44
>1dt0_A Superoxide dismutase; pseudomonas ovalis, oxidoreductase; 2.10A {Pseudomonas putida} SCOP: a.2.11.1 d.44.1.1
Probab=22.53 E-value=32 Score=24.70 Aligned_cols=17 Identities=29% Similarity=1.081 Sum_probs=12.8
Q ss_pred HHHHHHHHhcCCCCCCC
Q 034684 53 FKLFWQCMRSKPGEEPT 69 (87)
Q Consensus 53 fkLfwrCmRSk~GeEP~ 69 (87)
=.+||.||....|.+|.
T Consensus 73 H~~fw~~L~P~gg~~P~ 89 (197)
T 1dt0_A 73 HTFYWNCLSPNAGGQPT 89 (197)
T ss_dssp HHHHHHTBCSSCCSCCC
T ss_pred HHHHHHHhccCCCCCCC
Confidence 36899999876666774
No 45
>1mng_A Manganese superoxide dismutase; oxidoreductase(superoxide acceptor); 1.80A {Thermus thermophilus} SCOP: a.2.11.1 d.44.1.1 PDB: 3mds_A
Probab=22.48 E-value=38 Score=24.32 Aligned_cols=16 Identities=31% Similarity=0.802 Sum_probs=11.9
Q ss_pred HHHHHHHhcCCCCCCC
Q 034684 54 KLFWQCMRSKPGEEPT 69 (87)
Q Consensus 54 kLfwrCmRSk~GeEP~ 69 (87)
.+||.||.-..|.+|.
T Consensus 84 ~~fw~~L~p~gg~~P~ 99 (203)
T 1mng_A 84 SLFWRLLTPGGAKEPV 99 (203)
T ss_dssp HHHHHHTCTTSCSSCC
T ss_pred HHHHhccCCCCCCCCC
Confidence 4799999766566664
No 46
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.47 E-value=31 Score=15.73 Aligned_cols=11 Identities=18% Similarity=0.356 Sum_probs=8.3
Q ss_pred CcCCCCcCccc
Q 034684 20 EHRQPKAHRCN 30 (87)
Q Consensus 20 ~~~~~rphRCN 30 (87)
.+...++|.|+
T Consensus 3 ~~~~~k~~~C~ 13 (36)
T 2els_A 3 SGSSGKIFTCE 13 (36)
T ss_dssp TTSCCCCEECT
T ss_pred CCCCCCCEECC
Confidence 45677889887
No 47
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.99 E-value=27 Score=17.04 Aligned_cols=8 Identities=13% Similarity=-0.093 Sum_probs=3.9
Q ss_pred CCCcCccc
Q 034684 23 QPKAHRCN 30 (87)
Q Consensus 23 ~~rphRCN 30 (87)
+.++|.|+
T Consensus 37 ~~~~~~C~ 44 (46)
T 2eoz_A 37 QETLSGPS 44 (46)
T ss_dssp SCCSSSCC
T ss_pred CCCCCCCC
Confidence 44555554
No 48
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.92 E-value=36 Score=16.36 Aligned_cols=10 Identities=20% Similarity=0.149 Sum_probs=5.7
Q ss_pred cCCCCcCccc
Q 034684 21 HRQPKAHRCN 30 (87)
Q Consensus 21 ~~~~rphRCN 30 (87)
|.+.+|+.|+
T Consensus 35 H~~~k~~~C~ 44 (46)
T 2ytf_A 35 HTGEKPSGPS 44 (46)
T ss_dssp SCSSSSSCCC
T ss_pred hCCCCCCCCC
Confidence 4455666664
No 49
>3dc5_A Superoxide dismutase [MN] 2; alpha hairpin N domain, alpha/beta C domain, oxidoreductase, manganese, metal-binding, mitochondrion; 1.70A {Caenorhabditis elegans} PDB: 3dc6_A
Probab=21.65 E-value=32 Score=24.67 Aligned_cols=15 Identities=33% Similarity=0.950 Sum_probs=11.5
Q ss_pred HHHHHHHhcCCCCCCC
Q 034684 54 KLFWQCMRSKPGEEPT 69 (87)
Q Consensus 54 kLfwrCmRSk~GeEP~ 69 (87)
.+||.||....| +|.
T Consensus 76 ~~fw~~l~P~gg-~P~ 90 (195)
T 3dc5_A 76 SIFWTNLAKDGG-EPS 90 (195)
T ss_dssp HHHHHTBCSSCC-CCC
T ss_pred HHHHHhcCCCCC-CCC
Confidence 389999987666 664
No 50
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.64 E-value=29 Score=16.89 Aligned_cols=10 Identities=20% Similarity=0.149 Sum_probs=5.4
Q ss_pred cCCCCcCccc
Q 034684 21 HRQPKAHRCN 30 (87)
Q Consensus 21 ~~~~rphRCN 30 (87)
|.+.|||.|+
T Consensus 35 H~~~k~~~C~ 44 (46)
T 2em4_A 35 HTGEKPSGPS 44 (46)
T ss_dssp HSSSSCCCCC
T ss_pred cCCCCCCCCC
Confidence 3445566664
No 51
>1xre_A SODA-2, superoxide dismutase; spine, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=21.55 E-value=34 Score=24.98 Aligned_cols=16 Identities=44% Similarity=1.043 Sum_probs=12.3
Q ss_pred HHHHHHHhcCCCCCCC
Q 034684 54 KLFWQCMRSKPGEEPT 69 (87)
Q Consensus 54 kLfwrCmRSk~GeEP~ 69 (87)
.+||.||.-..|.+|.
T Consensus 93 s~FW~~L~P~gg~~P~ 108 (217)
T 1xre_A 93 SLFWEVMSPRGGGEPN 108 (217)
T ss_dssp HHHHHTBCTTCCSCCC
T ss_pred HHHHHHhccCCCCCCC
Confidence 5799999876676764
No 52
>4f2n_A Superoxide dismutase; ssgcid, NIH, niaid, SBRI, emerald biostructures, structural national institute of allergy and infectious diseases; 1.85A {Leishmania major}
Probab=21.49 E-value=29 Score=25.66 Aligned_cols=16 Identities=25% Similarity=0.848 Sum_probs=13.2
Q ss_pred HHHHHHHhcCCCCCCC
Q 034684 54 KLFWQCMRSKPGEEPT 69 (87)
Q Consensus 54 kLfwrCmRSk~GeEP~ 69 (87)
.+||.||....|.+|.
T Consensus 109 s~Fw~~L~P~gg~~P~ 124 (230)
T 4f2n_A 109 SFFWKCLSPGGKPMPK 124 (230)
T ss_dssp HHHHHTBCTTCBCCCH
T ss_pred HHHHHhcCCCCCCChH
Confidence 5899999988777774
No 53
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.37 E-value=34 Score=16.49 Aligned_cols=10 Identities=10% Similarity=0.069 Sum_probs=5.5
Q ss_pred cCCCCcCccc
Q 034684 21 HRQPKAHRCN 30 (87)
Q Consensus 21 ~~~~rphRCN 30 (87)
|.+.+|+.|+
T Consensus 35 H~~~k~~~C~ 44 (46)
T 2ep1_A 35 HTGENPSGPS 44 (46)
T ss_dssp GSSSCCCSSS
T ss_pred hCCCCCCCCC
Confidence 4455566664
No 54
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.06 E-value=35 Score=16.44 Aligned_cols=10 Identities=20% Similarity=0.145 Sum_probs=5.3
Q ss_pred cCCCCcCccc
Q 034684 21 HRQPKAHRCN 30 (87)
Q Consensus 21 ~~~~rphRCN 30 (87)
|.+.+||.|+
T Consensus 35 H~~~k~~~C~ 44 (46)
T 2eq3_A 35 HTGKKPSGPS 44 (46)
T ss_dssp SCCCCCCCSC
T ss_pred hCCCCCCCCC
Confidence 4445556654
No 55
>2awp_A Iron super-oxide dismutase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.00A {Plasmodium knowlesi} PDB: 2bpi_A 2a03_A 2goj_A
Probab=20.99 E-value=35 Score=24.42 Aligned_cols=16 Identities=31% Similarity=0.843 Sum_probs=12.4
Q ss_pred HHHHHHHhcCCCCCCC
Q 034684 54 KLFWQCMRSKPGEEPT 69 (87)
Q Consensus 54 kLfwrCmRSk~GeEP~ 69 (87)
.+||.||.-..|.+|.
T Consensus 75 ~~fw~~L~P~gg~~P~ 90 (198)
T 2awp_A 75 SFYWDSMGPNCGGEPH 90 (198)
T ss_dssp HHHHHTBCTTCCSSCC
T ss_pred HHHHHhcCCCCCCCCC
Confidence 5799999776666774
No 56
>3iez_A RAS GTPase-activating-like protein iqgap2; structural genomics consortium, SGC, alternative splicing, calmodulin-binding, phosphoprotein; 1.50A {Homo sapiens} PDB: 4eza_A
Probab=20.91 E-value=17 Score=24.46 Aligned_cols=24 Identities=17% Similarity=0.274 Sum_probs=20.0
Q ss_pred ccchhHHHHHHHHhhCCCCcccCc
Q 034684 28 RCNDRAEDVIQACFEGNPFKTVPG 51 (87)
Q Consensus 28 RCNDR~eDvlqa~fegn~~~tvp~ 51 (87)
..+=+++|+||+-++|.+..++..
T Consensus 75 ~~~l~ldDLLq~Qye~~~~l~lfd 98 (114)
T 3iez_A 75 KVQLNIQDLLQMQYEGVAVMKMFD 98 (114)
T ss_dssp EEEEEHHHHHHHHHTTCCEEEEET
T ss_pred EEEeeHHHHHHHHHCCCceEEecC
Confidence 456689999999999999887754
No 57
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.71 E-value=38 Score=16.36 Aligned_cols=10 Identities=20% Similarity=0.149 Sum_probs=5.8
Q ss_pred cCCCCcCccc
Q 034684 21 HRQPKAHRCN 30 (87)
Q Consensus 21 ~~~~rphRCN 30 (87)
|.+.+||.|+
T Consensus 35 H~~~k~~~C~ 44 (46)
T 2eq1_A 35 HTGEKPSGPS 44 (46)
T ss_dssp TCCSCCSSCC
T ss_pred hCCCCCCCCC
Confidence 4455666664
No 58
>4ffk_A Superoxide dismutase; oxidoreductase, superoxide acceptor; 1.76A {Acidilobus saccharovorans}
Probab=20.64 E-value=36 Score=25.04 Aligned_cols=16 Identities=38% Similarity=0.790 Sum_probs=12.0
Q ss_pred HHHHHHHhcCC--CCCCC
Q 034684 54 KLFWQCMRSKP--GEEPT 69 (87)
Q Consensus 54 kLfwrCmRSk~--GeEP~ 69 (87)
.+||.||.... |.+|.
T Consensus 93 s~fw~~L~P~g~~gg~P~ 110 (223)
T 4ffk_A 93 TLYWLNMAPKGKGGGTPG 110 (223)
T ss_dssp HHHHHTBCCTTTSCSCCC
T ss_pred HHHHHhcCCCCCCCCCCC
Confidence 48999998665 66774
No 59
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.49 E-value=46 Score=16.14 Aligned_cols=14 Identities=14% Similarity=0.304 Sum_probs=10.1
Q ss_pred CCCcCCCCcCccch
Q 034684 18 EGEHRQPKAHRCND 31 (87)
Q Consensus 18 ~~~~~~~rphRCND 31 (87)
...|.+.+++.|+.
T Consensus 4 ~~~h~~~k~~~C~~ 17 (46)
T 2em8_A 4 GSSGSGEKPYKCVE 17 (46)
T ss_dssp CCCCCSCCSEECSS
T ss_pred CCCCCCCCCeECcc
Confidence 34577788999863
No 60
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.38 E-value=36 Score=15.58 Aligned_cols=12 Identities=17% Similarity=0.321 Sum_probs=8.8
Q ss_pred CcCCCCcCccch
Q 034684 20 EHRQPKAHRCND 31 (87)
Q Consensus 20 ~~~~~rphRCND 31 (87)
.|.+.+++.|+.
T Consensus 3 ~h~~~k~~~C~~ 14 (37)
T 2elp_A 3 SGSSGRAMKCPY 14 (37)
T ss_dssp SCCCCCCEECSS
T ss_pred CCCCCCCeECCC
Confidence 466778899873
No 61
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.36 E-value=40 Score=16.21 Aligned_cols=10 Identities=20% Similarity=0.149 Sum_probs=6.2
Q ss_pred cCCCCcCccc
Q 034684 21 HRQPKAHRCN 30 (87)
Q Consensus 21 ~~~~rphRCN 30 (87)
|.+.+||.|+
T Consensus 35 H~~~~p~~C~ 44 (46)
T 2yts_A 35 HTGEKPSGPS 44 (46)
T ss_dssp TSSCCSSCCC
T ss_pred cCCCCCcCCC
Confidence 4556667665
No 62
>2rcv_A Superoxide dismutase [MN]; bacillus subtilis,superoxide dismutase, manganese, metal- binding, oxidoreductase, phosphorylation; 1.60A {Bacillus subtilis} PDB: 1xuq_A 1jr9_A
Probab=20.34 E-value=38 Score=24.27 Aligned_cols=16 Identities=50% Similarity=1.012 Sum_probs=11.9
Q ss_pred HHHHHHHhcCCCCCCC
Q 034684 54 KLFWQCMRSKPGEEPT 69 (87)
Q Consensus 54 kLfwrCmRSk~GeEP~ 69 (87)
.+||.||.-..|.+|.
T Consensus 83 ~~fw~~L~p~gg~~P~ 98 (202)
T 2rcv_A 83 KLFWTLLSPNGGGEPT 98 (202)
T ss_dssp HHHHHTBCTTCCSCCC
T ss_pred HHHHHHhccCCCCCCC
Confidence 5799999766566664
No 63
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.29 E-value=39 Score=16.30 Aligned_cols=10 Identities=10% Similarity=0.132 Sum_probs=5.7
Q ss_pred cCCCCcCccc
Q 034684 21 HRQPKAHRCN 30 (87)
Q Consensus 21 ~~~~rphRCN 30 (87)
|.+.+||.|+
T Consensus 35 H~~~~~~~C~ 44 (46)
T 2emg_A 35 HTGERPSGPS 44 (46)
T ss_dssp TSCCCCSCSC
T ss_pred hCCCCCCCCC
Confidence 4455666664
No 64
>1coj_A Protein (superoxide dismutase); oxidoreductase; 1.90A {Aquifex pyrophilus} SCOP: a.2.11.1 d.44.1.1
Probab=20.07 E-value=27 Score=25.18 Aligned_cols=16 Identities=19% Similarity=0.482 Sum_probs=12.2
Q ss_pred HHHHHHHhcCCCCCCC
Q 034684 54 KLFWQCMRSKPGEEPT 69 (87)
Q Consensus 54 kLfwrCmRSk~GeEP~ 69 (87)
.+||.||.-..|.+|.
T Consensus 82 s~FW~~L~P~gg~~P~ 97 (212)
T 1coj_A 82 ELYFGMLTPGGKGEPS 97 (212)
T ss_dssp HHHHTTBCTTCBSCCC
T ss_pred HHHHHhcccCCCCCCC
Confidence 5799999766666664
Done!