Query 034684
Match_columns 87
No_of_seqs 21 out of 23
Neff 2.3
Searched_HMMs 13730
Date Mon Mar 25 08:33:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034684.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034684hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ct1a2 g.37.1.1 (A:8-43) Tran 52.3 1.9 0.00014 22.3 0.5 11 20-30 2-12 (36)
2 d1x6ea1 g.37.1.1 (A:8-40) Zinc 47.8 2.3 0.00016 21.8 0.4 11 21-31 2-12 (33)
3 d1p7aa_ g.37.1.1 (A:) Kruppel- 45.5 3.6 0.00026 21.0 1.0 13 19-31 4-16 (37)
4 d1srka_ g.37.1.1 (A:) Zinc fin 42.1 3.6 0.00026 21.3 0.6 10 21-30 2-11 (35)
5 d1x6ha2 g.37.1.1 (A:8-43) Tran 41.4 3.4 0.00025 21.1 0.5 12 20-31 2-13 (36)
6 d2epsa1 g.37.1.1 (A:408-446) P 41.1 4.6 0.00033 21.2 1.0 11 20-30 28-38 (39)
7 d1ix9a1 a.2.11.1 (A:1-90) Mn s 38.4 3.6 0.00026 24.8 0.3 8 54-61 82-89 (90)
8 d2cota2 g.37.1.1 (A:7-44) Zinc 34.7 6.6 0.00048 20.0 1.0 13 19-31 5-17 (38)
9 d1my6a1 a.2.11.1 (A:1-88) Fe s 32.1 5.2 0.00038 23.7 0.3 32 29-61 49-87 (88)
10 d1ma1a1 a.2.11.1 (A:4-91) Fe s 27.1 7.1 0.00052 23.2 0.3 8 54-61 78-85 (88)
11 d1mnga1 a.2.11.1 (A:1-92) Mn s 26.5 9.5 0.00069 22.8 0.8 8 54-61 84-91 (92)
12 d1idsa1 a.2.11.1 (A:2-85) Fe s 26.4 9.3 0.00068 22.5 0.7 8 54-61 76-83 (84)
13 d2p4ka1 a.2.11.1 (A:1-83) Mn s 25.7 8.4 0.00061 22.6 0.4 8 54-61 75-82 (83)
14 d1p7ga1 a.2.11.1 (A:12-103) Fe 25.2 5.3 0.00039 24.0 -0.6 13 53-65 79-91 (92)
15 d2dlka2 g.37.1.1 (A:38-73) Zin 22.8 9.2 0.00067 19.5 0.2 11 20-30 25-35 (36)
16 d1unfx1 a.2.11.1 (X:14-104) Fe 21.7 10 0.00076 22.5 0.3 8 54-61 83-90 (91)
17 d1ckia_ d.144.1.7 (A:) Casein 20.3 45 0.0033 21.1 3.3 45 28-74 243-290 (299)
No 1
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}
Probab=52.35 E-value=1.9 Score=22.26 Aligned_cols=11 Identities=27% Similarity=0.486 Sum_probs=9.5
Q ss_pred CcCCCCcCccc
Q 034684 20 EHRQPKAHRCN 30 (87)
Q Consensus 20 ~~~~~rphRCN 30 (87)
.|.+.|||.|+
T Consensus 2 ~HTgekP~~C~ 12 (36)
T d2ct1a2 2 THSGEKPYECY 12 (36)
T ss_dssp CCSCCCSEECT
T ss_pred ccCCCCCEeCC
Confidence 47899999996
No 2
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}
Probab=47.84 E-value=2.3 Score=21.83 Aligned_cols=11 Identities=27% Similarity=0.504 Sum_probs=9.4
Q ss_pred cCCCCcCccch
Q 034684 21 HRQPKAHRCND 31 (87)
Q Consensus 21 ~~~~rphRCND 31 (87)
|.+.|||.|+.
T Consensus 2 HTgekpy~C~~ 12 (33)
T d1x6ea1 2 HSGEKPYGCVE 12 (33)
T ss_dssp TTTCCCEECSS
T ss_pred cCCCCCeeCCC
Confidence 67899999984
No 3
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}
Probab=45.50 E-value=3.6 Score=21.01 Aligned_cols=13 Identities=23% Similarity=0.371 Sum_probs=10.6
Q ss_pred CCcCCCCcCccch
Q 034684 19 GEHRQPKAHRCND 31 (87)
Q Consensus 19 ~~~~~~rphRCND 31 (87)
-.|.+.|||.|+.
T Consensus 4 R~HTgeKPy~C~~ 16 (37)
T d1p7aa_ 4 RGSTGIKPFQCPD 16 (37)
T ss_dssp STTCCSSSBCCTT
T ss_pred CccCCccCeEeCC
Confidence 3588999999974
No 4
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=42.11 E-value=3.6 Score=21.26 Aligned_cols=10 Identities=10% Similarity=0.358 Sum_probs=8.6
Q ss_pred cCCCCcCccc
Q 034684 21 HRQPKAHRCN 30 (87)
Q Consensus 21 ~~~~rphRCN 30 (87)
+.+.|||.|+
T Consensus 2 ~TGekPy~C~ 11 (35)
T d1srka_ 2 SSGKRPFVCR 11 (35)
T ss_dssp CSCCSCEECS
T ss_pred CCCCccccCC
Confidence 6789999996
No 5
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}
Probab=41.40 E-value=3.4 Score=21.06 Aligned_cols=12 Identities=25% Similarity=0.492 Sum_probs=9.9
Q ss_pred CcCCCCcCccch
Q 034684 20 EHRQPKAHRCND 31 (87)
Q Consensus 20 ~~~~~rphRCND 31 (87)
.|.+.||+.|+.
T Consensus 2 ~HTgekPy~C~~ 13 (36)
T d1x6ha2 2 THTGEKPYACSH 13 (36)
T ss_dssp TCCCCCCEECSS
T ss_pred CCCCCCCEECCC
Confidence 478999999984
No 6
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=41.10 E-value=4.6 Score=21.20 Aligned_cols=11 Identities=27% Similarity=0.833 Sum_probs=9.2
Q ss_pred CcCCCCcCccc
Q 034684 20 EHRQPKAHRCN 30 (87)
Q Consensus 20 ~~~~~rphRCN 30 (87)
-|.+.|||.|+
T Consensus 28 ~Ht~ekpy~C~ 38 (39)
T d2epsa1 28 VHTSERPHKCQ 38 (39)
T ss_dssp TSCCCCCCCSS
T ss_pred ccCCCcCcCCc
Confidence 37889999996
No 7
>d1ix9a1 a.2.11.1 (A:1-90) Mn superoxide dismutase (MnSOD) {Escherichia coli [TaxId: 562]}
Probab=38.42 E-value=3.6 Score=24.77 Aligned_cols=8 Identities=38% Similarity=1.261 Sum_probs=6.8
Q ss_pred HHHHHHHh
Q 034684 54 KLFWQCMR 61 (87)
Q Consensus 54 kLfwrCmR 61 (87)
.+||+||+
T Consensus 82 ~~fW~~mk 89 (90)
T d1ix9a1 82 SLFWKGLK 89 (90)
T ss_dssp HHHHHTBC
T ss_pred HHHHHHhc
Confidence 58999996
No 8
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.70 E-value=6.6 Score=19.98 Aligned_cols=13 Identities=15% Similarity=0.600 Sum_probs=10.8
Q ss_pred CCcCCCCcCccch
Q 034684 19 GEHRQPKAHRCND 31 (87)
Q Consensus 19 ~~~~~~rphRCND 31 (87)
-.|.+.|||.|+.
T Consensus 5 ~~Ht~ekpy~C~~ 17 (38)
T d2cota2 5 WQQRERRRYKCDE 17 (38)
T ss_dssp SCCCCSCSSBCSS
T ss_pred cccCCCCCEecCC
Confidence 4588999999984
No 9
>d1my6a1 a.2.11.1 (A:1-88) Fe superoxide dismutase (FeSOD) {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=32.14 E-value=5.2 Score=23.66 Aligned_cols=32 Identities=25% Similarity=0.627 Sum_probs=18.6
Q ss_pred cchhHHHHHHHHhhCCCCcc-cC----ch--HHHHHHHHh
Q 034684 29 CNDRAEDVIQACFEGNPFKT-VP----GP--FKLFWQCMR 61 (87)
Q Consensus 29 CNDR~eDvlqa~fegn~~~t-vp----~~--fkLfwrCmR 61 (87)
.+..++++|.... ++.... +. +. =.+||+||+
T Consensus 49 ~~~~l~~ii~~~~-~~~~~~~v~nnagg~~NH~~fW~~m~ 87 (88)
T d1my6a1 49 ADKSLEDVIRTTY-GDAAKVGIFNNAAQVWNHTFFWNSLK 87 (88)
T ss_dssp GGSCHHHHHHHHT-TCTTCHHHHHHHHHHHHHHHHHHTBC
T ss_pred HhcCHHHHHHHHH-HhHHHHHHHhcchhHhhHHHHHhccC
Confidence 4556888887764 332211 11 22 268999995
No 10
>d1ma1a1 a.2.11.1 (A:4-91) Fe superoxide dismutase (FeSOD) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=27.11 E-value=7.1 Score=23.19 Aligned_cols=8 Identities=38% Similarity=0.899 Sum_probs=6.8
Q ss_pred HHHHHHHh
Q 034684 54 KLFWQCMR 61 (87)
Q Consensus 54 kLfwrCmR 61 (87)
.+||+||.
T Consensus 78 s~fW~~m~ 85 (88)
T d1ma1a1 78 LFFWGNMG 85 (88)
T ss_dssp HHHHHTBC
T ss_pred HHHhcccC
Confidence 68999996
No 11
>d1mnga1 a.2.11.1 (A:1-92) Mn superoxide dismutase (MnSOD) {Thermus thermophilus [TaxId: 274]}
Probab=26.53 E-value=9.5 Score=22.77 Aligned_cols=8 Identities=38% Similarity=1.161 Sum_probs=6.5
Q ss_pred HHHHHHHh
Q 034684 54 KLFWQCMR 61 (87)
Q Consensus 54 kLfwrCmR 61 (87)
.+||+||.
T Consensus 84 ~~fW~~m~ 91 (92)
T d1mnga1 84 SLFWRLLT 91 (92)
T ss_dssp HHHHHHTC
T ss_pred HHHHcccC
Confidence 48999984
No 12
>d1idsa1 a.2.11.1 (A:2-85) Fe superoxide dismutase (FeSOD) {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=26.38 E-value=9.3 Score=22.51 Aligned_cols=8 Identities=13% Similarity=0.958 Sum_probs=6.5
Q ss_pred HHHHHHHh
Q 034684 54 KLFWQCMR 61 (87)
Q Consensus 54 kLfwrCmR 61 (87)
.+||+||.
T Consensus 76 ~~fW~~m~ 83 (84)
T d1idsa1 76 TIWWKNLS 83 (84)
T ss_dssp HHHHHHBC
T ss_pred HHHhcccC
Confidence 58999984
No 13
>d2p4ka1 a.2.11.1 (A:1-83) Mn superoxide dismutase (MnSOD) {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.69 E-value=8.4 Score=22.63 Aligned_cols=8 Identities=25% Similarity=1.037 Sum_probs=6.4
Q ss_pred HHHHHHHh
Q 034684 54 KLFWQCMR 61 (87)
Q Consensus 54 kLfwrCmR 61 (87)
.+||+||.
T Consensus 75 ~~fW~~m~ 82 (83)
T d2p4ka1 75 SIFWTNLS 82 (83)
T ss_dssp HHHHHTBC
T ss_pred HHHhcccC
Confidence 58999984
No 14
>d1p7ga1 a.2.11.1 (A:12-103) Fe superoxide dismutase (FeSOD) {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=25.20 E-value=5.3 Score=23.96 Aligned_cols=13 Identities=23% Similarity=0.585 Sum_probs=9.5
Q ss_pred HHHHHHHHhcCCC
Q 034684 53 FKLFWQCMRSKPG 65 (87)
Q Consensus 53 fkLfwrCmRSk~G 65 (87)
=.+||+||...-|
T Consensus 79 H~~fW~~m~P~gg 91 (92)
T d1p7ga1 79 HSIFWPNMAPPGK 91 (92)
T ss_dssp HHHHTTTBCSBTT
T ss_pred HHHHHhccCCCCC
Confidence 3689999986543
No 15
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.85 E-value=9.2 Score=19.54 Aligned_cols=11 Identities=18% Similarity=0.431 Sum_probs=8.9
Q ss_pred CcCCCCcCccc
Q 034684 20 EHRQPKAHRCN 30 (87)
Q Consensus 20 ~~~~~rphRCN 30 (87)
.|.+.||+.|+
T Consensus 25 ~Htgekpy~C~ 35 (36)
T d2dlka2 25 LHSDTRDYICE 35 (36)
T ss_dssp HHHTSCCCSCC
T ss_pred eeCCCCCEeCC
Confidence 36789999995
No 16
>d1unfx1 a.2.11.1 (X:14-104) Fe superoxide dismutase (FeSOD) {Cowpea (Vigna unguiculata) [TaxId: 3917]}
Probab=21.67 E-value=10 Score=22.46 Aligned_cols=8 Identities=50% Similarity=1.825 Sum_probs=6.7
Q ss_pred HHHHHHHh
Q 034684 54 KLFWQCMR 61 (87)
Q Consensus 54 kLfwrCmR 61 (87)
.+||+||.
T Consensus 83 slfW~~m~ 90 (91)
T d1unfx1 83 DFFWECMK 90 (91)
T ss_dssp HHHHHTBC
T ss_pred HHHHhccC
Confidence 68999984
No 17
>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=20.25 E-value=45 Score=21.10 Aligned_cols=45 Identities=11% Similarity=0.103 Sum_probs=28.1
Q ss_pred ccchhHHHHHHHHhhCCCCcccCchHHHHHHHHhc---CCCCCCCCcccc
Q 034684 28 RCNDRAEDVIQACFEGNPFKTVPGPFKLFWQCMRS---KPGEEPTEPFTY 74 (87)
Q Consensus 28 RCNDR~eDvlqa~fegn~~~tvp~~fkLfwrCmRS---k~GeEP~dpy~~ 74 (87)
-|.+-+.|+|+.|+..||-.- +.|.-+.+++++ +.|....++|-|
T Consensus 243 ~~p~~~~~li~~cl~~~p~~R--P~~~~i~~~l~~~~~~~~~~~~~~~Dw 290 (299)
T d1ckia_ 243 GYPSEFATYLNFCRSLRFDDK--PDYSYLRQLFRNLFHRQGFSYDYVFDW 290 (299)
T ss_dssp TSCHHHHHHHHHHHHSCTTCC--CCHHHHHHHHHHHHHHHTCCCSCCCHH
T ss_pred CCCHHHHHHHHHHccCChhHC--cCHHHHHHHHHHHHHHcCCCCCCCcCc
Confidence 467889999999999988643 344333333332 445566666644
Done!