BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034685
(87 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VCX|A Chain A, Crystal Structure Of A Putative GlyoxalaseBLEOMYCIN
RESISTANCE Protein From Rhodopseudomonas Palustris
Cga009
pdb|3VCX|B Chain B, Crystal Structure Of A Putative GlyoxalaseBLEOMYCIN
RESISTANCE Protein From Rhodopseudomonas Palustris
Cga009
Length = 164
Score = 29.3 bits (64), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 5 TAKGTVTSLSSMFSVDDVQKAAKRVQDA----LLEKQQELERVKEFISDNTN--LINLVQ 58
+G V+ L F VDD + R+Q A LL + E + FI+ + N LI++++
Sbjct: 84 AGRGQVSGLILNFEVDDPDREYARLQQAGLPILLTLRDEDFGQRHFITADPNGVLIDIIK 143
Query: 59 KLP 61
+P
Sbjct: 144 PIP 146
>pdb|2OV9|A Chain A, Crystal Structure Of Protein Rha08564, Thioesterase
Superfamily Protein
pdb|2OV9|B Chain B, Crystal Structure Of Protein Rha08564, Thioesterase
Superfamily Protein
pdb|2OV9|C Chain C, Crystal Structure Of Protein Rha08564, Thioesterase
Superfamily Protein
pdb|2OV9|D Chain D, Crystal Structure Of Protein Rha08564, Thioesterase
Superfamily Protein
Length = 216
Score = 28.9 bits (63), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 3 EPTAKGTV-TSLSSMFSVDDVQKAAKRVQDALLEKQQ---ELERVKE 45
E + GTV TS +VD AA+RV DALL + LERV E
Sbjct: 10 ENSPSGTVLTSPPDGSAVDRATDAARRVVDALLRTDRGNANLERVAE 56
>pdb|3HRK|A Chain A, Histidyl-Trna Synthetase From Trypanosoma Cruzi
(Histidyl-Adenylate Complex)
pdb|3HRK|B Chain B, Histidyl-Trna Synthetase From Trypanosoma Cruzi
(Histidyl-Adenylate Complex)
pdb|3LC0|A Chain A, Histidyl-Trna Synthetase From Trypanosoma Cruzi (Histidine
Complex)
Length = 456
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 12/44 (27%), Positives = 25/44 (56%)
Query: 3 EPTAKGTVTSLSSMFSVDDVQKAAKRVQDALLEKQQELERVKEF 46
EPT +T+ S+ S+D++ + +A+ E +Q E+V+ +
Sbjct: 235 EPTVVDAITTTLSLKSIDEIAQRVGEEHEAVKELRQFFEQVEAY 278
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 26.6 bits (57), Expect = 3.8, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 3 EPTAKGTVTSLSSM-----FSVDDVQKAAKRVQDALLEKQQELERVKE-FISDNTNLINL 56
EP GTV +S + V++ V +LLEK QE ERV + IS I +
Sbjct: 71 EPATSGTVNLFGKXPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGV 130
Query: 57 VQKLPEELHH 66
Q + +E+ +
Sbjct: 131 YQDIDDEIRN 140
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
Query: 22 VQKAAKRVQDALLEKQQELERVKEFISDNTNLI-----NLVQKLP 61
+++ +RV+ LLEK++ LERV E + + L +V+ LP
Sbjct: 435 IEEQYQRVKALLLEKREVLERVAETLLERETLTAEEFQRVVEGLP 479
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 26.2 bits (56), Expect = 4.3, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
Query: 22 VQKAAKRVQDALLEKQQELERVKEFISDNTNLI-----NLVQKLP 61
+++ +RV+ LLEK++ LERV E + + L +V+ LP
Sbjct: 426 IEEQYQRVKALLLEKREVLERVAETLLERETLTAEEFQRVVEGLP 470
>pdb|2AEV|A Chain A, Mj0158, Nabh4-Reduced Form
Length = 374
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 2 EEPTAKGTVTSLSSMFSVDDVQKAAKRVQDALLEKQQELERVKEFISDNTNLI 54
+ P G +L + F+++ ++KA +R ++ L K ++L + + I DN N++
Sbjct: 240 QPPLLAGIYRALKN-FNLERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIV 291
>pdb|2AEU|A Chain A, Mj0158, Apo Form
Length = 374
Score = 26.2 bits (56), Expect = 4.5, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 2 EEPTAKGTVTSLSSMFSVDDVQKAAKRVQDALLEKQQELERVKEFISDNTNLI 54
+ P G +L + F+++ ++KA +R ++ L K ++L + + I DN N++
Sbjct: 240 QPPLLAGIYRALKN-FNLERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIV 291
>pdb|1TT4|A Chain A, Structure Of Np459575, A Predicted Glutathione Synthase
From Salmonella Typhimurium
pdb|1TT4|B Chain B, Structure Of Np459575, A Predicted Glutathione Synthase
From Salmonella Typhimurium
Length = 396
Score = 25.8 bits (55), Expect = 5.7, Method: Composition-based stats.
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 39 ELERVKEFISDNTNLINLVQK 59
E + ++EFI+D +LI LVQK
Sbjct: 368 EAQYMREFIADGGSLIGLVQK 388
>pdb|1Z5V|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To
Gtpgammas
pdb|1Z5W|A Chain A, Crystal Structure Of Gamma-Tubulin Bound To Gtp
Length = 474
Score = 25.0 bits (53), Expect = 9.7, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 29/55 (52%)
Query: 11 TSLSSMFSVDDVQKAAKRVQDALLEKQQELERVKEFISDNTNLINLVQKLPEELH 65
TS+SS+F Q R ++A LE+ ++ + K+ + +VQ+L +E H
Sbjct: 382 TSISSLFERTCRQYDKLRKREAFLEQFRKEDMFKDNFDEMDTSREIVQQLIDEYH 436
>pdb|3CB2|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To Gdp
pdb|3CB2|B Chain B, Crystal Structure Of Human Gamma-Tubulin Bound To Gdp
Length = 475
Score = 25.0 bits (53), Expect = 9.9, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 29/55 (52%)
Query: 11 TSLSSMFSVDDVQKAAKRVQDALLEKQQELERVKEFISDNTNLINLVQKLPEELH 65
TS+SS+F Q R ++A LE+ ++ + K+ + +VQ+L +E H
Sbjct: 382 TSISSLFERTCRQYDKLRKREAFLEQFRKEDMFKDNFDEMDTSREIVQQLIDEYH 436
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.126 0.350
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,446,709
Number of Sequences: 62578
Number of extensions: 71861
Number of successful extensions: 238
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 223
Number of HSP's gapped (non-prelim): 22
length of query: 87
length of database: 14,973,337
effective HSP length: 55
effective length of query: 32
effective length of database: 11,531,547
effective search space: 369009504
effective search space used: 369009504
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 45 (21.9 bits)