BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034685
(87 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A2XCA0|MRS2H_ORYSI Putative magnesium transporter MRS2-H OS=Oryza sativa subsp. indica
GN=MRS2-H PE=3 SV=1
Length = 435
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 13 LSSMFSVDDVQKAAKRVQDALLEK--QQELERVKEFISDNTNLINLVQKLPEELHH 66
LS ++ D+ ++A V D L++ + LERV+ S T L+ VQK+ +E+ H
Sbjct: 206 LSYNSTISDLNRSAIAVLDDLMKSVSTRNLERVRSLKSSLTRLLASVQKVRDEVEH 261
>sp|A4W7T6|CAAL_ENT38 Carboxylate-amine ligase Ent638_1085 OS=Enterobacter sp. (strain
638) GN=Ent638_1085 PE=3 SV=1
Length = 373
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Query: 18 SVDDVQKAAKRVQDALLEKQ--QELERVKEFISDNTNLINLVQK 59
S + + A+ + AL+ KQ E +R+++FI+D +LI+LVQK
Sbjct: 321 SAEKLGGASAIAEIALMLKQGKSEAQRMRDFIADGGSLISLVQK 364
>sp|Q9IBG7|KCP_XENLA Kielin/chordin-like protein OS=Xenopus laevis GN=kcp PE=2 SV=1
Length = 2327
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 20 DDVQKAAKRVQDALLEKQQELERVKEFISDNTNLINLVQKLPEELHHGIMA--SSFWKSS 77
D Q+ V LL K L+R++E + TN+I++++ +L ++A S + S
Sbjct: 280 DHYQQQQSEVPAQLLAKDDRLQRLEEAVKGLTNMIDMIKSQNADLQARVIALESCECRRS 339
Query: 78 IFSWAFDTYQ 87
W YQ
Sbjct: 340 TCVWEDKEYQ 349
>sp|Q7A3J7|FNBA_STAAN Fibronectin-binding protein A OS=Staphylococcus aureus (strain
N315) GN=fnbA PE=3 SV=1
Length = 1038
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 6 AKGTVTSLSSMFSVDDVQKAAKRVQDALLEKQQELERVKEFISDNTNLINLVQKLPEELH 65
G VT+ S++ D +++ K + + +E KE+ ++ +NLI LV +LPEE
Sbjct: 632 GGGQVTTESNLVEFD--EESTKGIVTGAVSDHTTIEDTKEYTTE-SNLIELVDELPEE-- 686
Query: 66 HG 67
HG
Sbjct: 687 HG 688
>sp|Q99RD2|FNBA_STAAM Fibronectin-binding protein A OS=Staphylococcus aureus (strain Mu50
/ ATCC 700699) GN=fnbA PE=3 SV=1
Length = 1038
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 6 AKGTVTSLSSMFSVDDVQKAAKRVQDALLEKQQELERVKEFISDNTNLINLVQKLPEELH 65
G VT+ S++ D +++ K + + +E KE+ ++ +NLI LV +LPEE
Sbjct: 632 GGGQVTTESNLVEFD--EESTKGIVTGAVSDHTTIEDTKEYTTE-SNLIELVDELPEE-- 686
Query: 66 HG 67
HG
Sbjct: 687 HG 688
>sp|A7X6I5|FNBA_STAA1 Fibronectin-binding protein A OS=Staphylococcus aureus (strain Mu3
/ ATCC 700698) GN=fnbA PE=3 SV=1
Length = 1038
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 6 AKGTVTSLSSMFSVDDVQKAAKRVQDALLEKQQELERVKEFISDNTNLINLVQKLPEELH 65
G VT+ S++ D +++ K + + +E KE+ ++ +NLI LV +LPEE
Sbjct: 632 GGGQVTTESNLVEFD--EESTKGIVTGAVSDHTTIEDTKEYTTE-SNLIELVDELPEE-- 686
Query: 66 HG 67
HG
Sbjct: 687 HG 688
>sp|Q8NUU7|FNBA_STAAW Fibronectin-binding protein A OS=Staphylococcus aureus (strain MW2)
GN=fnbA PE=3 SV=1
Length = 1015
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 6 AKGTVTSLSSMFSVDDVQKAAKRVQDALLEKQQELERVKEFISDNTNLINLVQKLPEELH 65
G VT+ S++ D +++ K + + +E KE+ ++ +NLI LV +LPEE
Sbjct: 637 GGGQVTTESNLVEFD--EESTKGIVTGAVSDHTTIEDTKEYTTE-SNLIELVDELPEE-- 691
Query: 66 HG 67
HG
Sbjct: 692 HG 693
>sp|Q6G6H3|FNBA_STAAS Fibronectin-binding protein A OS=Staphylococcus aureus (strain
MSSA476) GN=fnbA PE=3 SV=1
Length = 1015
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 6 AKGTVTSLSSMFSVDDVQKAAKRVQDALLEKQQELERVKEFISDNTNLINLVQKLPEELH 65
G VT+ S++ D +++ K + + +E KE+ ++ +NLI LV +LPEE
Sbjct: 637 GGGQVTTESNLVEFD--EESTKGIVTGAVSDHTTIEDTKEYTTE-SNLIELVDELPEE-- 691
Query: 66 HG 67
HG
Sbjct: 692 HG 693
>sp|Q5HD51|FNBA_STAAC Fibronectin-binding protein A OS=Staphylococcus aureus (strain COL)
GN=fnbA PE=3 SV=1
Length = 1018
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 6 AKGTVTSLSSMFSVDDVQKAAKRVQDALLEKQQELERVKEFISDNTNLINLVQKLPEELH 65
G VT+ S++ D +++ K + + +E KE+ ++ +NLI LV +LPEE
Sbjct: 636 GGGQVTTESNLVEFD--EESTKGIVTGAVSDHTTVEDTKEYTTE-SNLIELVDELPEE-- 690
Query: 66 HG 67
HG
Sbjct: 691 HG 692
>sp|P14738|FNBA_STAA8 Fibronectin-binding protein A OS=Staphylococcus aureus (strain NCTC
8325) GN=fnbA PE=1 SV=1
Length = 1018
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 6 AKGTVTSLSSMFSVDDVQKAAKRVQDALLEKQQELERVKEFISDNTNLINLVQKLPEELH 65
G VT+ S++ D +++ K + + +E KE+ ++ +NLI LV +LPEE
Sbjct: 636 GGGQVTTESNLVEFD--EESTKGIVTGAVSDHTTVEDTKEYTTE-SNLIELVDELPEE-- 690
Query: 66 HG 67
HG
Sbjct: 691 HG 692
>sp|Q2FE03|FNBA_STAA3 Fibronectin-binding protein A OS=Staphylococcus aureus (strain
USA300) GN=fnbA PE=3 SV=1
Length = 1018
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 6 AKGTVTSLSSMFSVDDVQKAAKRVQDALLEKQQELERVKEFISDNTNLINLVQKLPEELH 65
G VT+ S++ D +++ K + + +E KE+ ++ +NLI LV +LPEE
Sbjct: 636 GGGQVTTESNLVEFD--EESTKGIVTGAVSDHTTVEDTKEYTTE-SNLIELVDELPEE-- 690
Query: 66 HG 67
HG
Sbjct: 691 HG 692
>sp|Q6GDU5|FNBA_STAAR Fibronectin-binding protein A OS=Staphylococcus aureus (strain
MRSA252) GN=fnbA PE=3 SV=1
Length = 965
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 6 AKGTVTSLSSMFSVDDVQKAAKRVQDALLEKQQELERVKEFISDNTNLINLVQKLPEELH 65
G VT+ S++ D +++ K + + +E KE+ ++ +NLI LV +LPEE
Sbjct: 639 GGGQVTTESNLVEFD--EESTKGIVTGAVSDHTTVEDTKEYTTE-SNLIELVDELPEE-- 693
Query: 66 HG 67
HG
Sbjct: 694 HG 695
>sp|Q10S25|MRS2H_ORYSJ Putative magnesium transporter MRS2-H OS=Oryza sativa subsp.
japonica GN=MRS2-H PE=2 SV=1
Length = 435
Score = 29.3 bits (64), Expect = 7.1, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 13 LSSMFSVDDVQKAAKRVQDALLEK--QQELERVKEFISDNTNLINLVQKLPEELHH 66
LS ++ D+ ++A V D L++ + LERV S T L+ VQK+ +E+ H
Sbjct: 206 LSYNSTISDLNRSAIAVLDDLMKSVSTRNLERVWSLKSSLTRLLASVQKVRDEVEH 261
>sp|Q9ZLQ0|PYRC_HELPJ Dihydroorotase OS=Helicobacter pylori (strain J99) GN=pyrC PE=3
SV=1
Length = 339
Score = 29.3 bits (64), Expect = 7.8, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 33 LLEKQQELERVKEFISDNTNLINLVQKLPEELHH 66
L EK LE ++ FISDN I + LP + H
Sbjct: 270 LFEKHNALENLQAFISDNAKKIYALDNLPSKKAH 303
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.126 0.350
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,787,380
Number of Sequences: 539616
Number of extensions: 935687
Number of successful extensions: 4631
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 4592
Number of HSP's gapped (non-prelim): 59
length of query: 87
length of database: 191,569,459
effective HSP length: 57
effective length of query: 30
effective length of database: 160,811,347
effective search space: 4824340410
effective search space used: 4824340410
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)