Query 034685
Match_columns 87
No_of_seqs 53 out of 55
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 08:34:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034685.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034685hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fxk_C Protein (prefoldin); ar 98.8 1.3E-08 4.4E-13 68.3 6.1 65 19-84 3-67 (133)
2 2zdi_C Prefoldin subunit alpha 98.3 8.7E-07 3E-11 60.9 4.5 62 21-84 13-77 (151)
3 2zqm_A Prefoldin beta subunit 89.9 1.6 5.4E-05 27.6 6.8 49 25-76 14-62 (117)
4 1fxk_A Prefoldin; archaeal pro 84.8 4.9 0.00017 24.9 6.8 51 23-76 7-57 (107)
5 3iv1_A Tumor susceptibility ge 84.5 2.9 0.0001 26.9 5.7 42 23-64 10-51 (78)
6 3fx7_A Putative uncharacterize 83.9 4.9 0.00017 26.6 6.7 49 15-63 4-67 (94)
7 3nmd_A CGMP dependent protein 81.1 5.9 0.0002 25.2 6.0 48 18-65 20-67 (72)
8 4fla_A Regulation of nuclear P 79.6 4.8 0.00017 28.1 5.8 35 25-62 115-149 (152)
9 3e98_A GAF domain of unknown f 77.2 6.3 0.00021 28.9 6.0 39 23-61 71-109 (252)
10 1gmj_A ATPase inhibitor; coile 75.7 12 0.00042 24.4 6.4 37 21-57 41-77 (84)
11 4ioe_A Secreted protein ESXB; 71.0 12 0.00043 21.9 5.3 29 17-45 9-37 (93)
12 4ath_A MITF, microphthalmia-as 70.9 8.5 0.00029 24.9 4.8 36 27-62 42-77 (83)
13 2aze_A Transcription factor DP 68.1 20 0.00068 25.6 6.7 41 21-61 9-49 (155)
14 3etw_A Adhesin A; antiparallel 66.9 24 0.00082 24.1 6.6 40 16-55 67-106 (119)
15 3zbh_A ESXA; unknown function, 66.9 17 0.00057 21.3 5.3 29 17-45 9-37 (99)
16 1zw0_A Type III secretion prot 66.3 16 0.00056 23.0 5.3 45 17-61 9-62 (66)
17 3u1c_A Tropomyosin alpha-1 cha 66.3 23 0.00078 22.7 6.2 42 22-63 18-59 (101)
18 3qks_A DNA double-strand break 65.8 5.2 0.00018 27.3 3.1 16 51-66 185-200 (203)
19 2q6q_A Spindle POLE BODY compo 65.4 16 0.00055 23.5 5.2 23 27-49 6-28 (74)
20 4i0x_A ESAT-6-like protein MAB 65.4 13 0.00044 22.7 4.6 30 18-47 1-30 (94)
21 3ph0_A ASCE; type III secretio 64.1 24 0.00083 22.2 6.0 43 18-60 13-64 (67)
22 3gwk_C SAG1039, putative uncha 64.1 20 0.00069 21.3 5.9 29 17-45 8-36 (98)
23 2j5u_A MREC protein; bacterial 63.1 7.8 0.00027 28.4 3.9 38 23-60 25-62 (255)
24 1ic2_A Tropomyosin alpha chain 63.1 23 0.0008 21.7 6.2 41 21-61 14-54 (81)
25 2avr_X Adhesion A; antiparalle 62.3 27 0.00091 24.0 6.2 39 17-55 68-106 (119)
26 2nrj_A HBL B protein; enteroto 62.1 26 0.0009 26.8 6.8 40 21-60 258-297 (346)
27 2p2u_A HOST-nuclease inhibitor 61.5 28 0.00096 24.2 6.3 11 71-81 88-98 (171)
28 3bvo_A CO-chaperone protein HS 61.5 16 0.00056 26.1 5.2 45 15-60 146-190 (207)
29 2lw1_A ABC transporter ATP-bin 58.9 24 0.00083 21.8 5.1 43 17-60 16-65 (89)
30 1rw2_A ATP-dependent DNA helic 58.9 34 0.0011 23.7 6.3 57 4-60 22-84 (152)
31 3uo3_A J-type CO-chaperone JAC 57.6 22 0.00074 24.9 5.2 42 18-60 119-160 (181)
32 2aze_A Transcription factor DP 57.1 42 0.0014 23.9 6.7 42 18-59 3-44 (155)
33 3tkl_B LIDA protein, substrate 56.7 2.3 7.8E-05 32.9 0.0 41 22-62 9-49 (267)
34 2zqm_A Prefoldin beta subunit 56.4 24 0.00082 21.9 4.8 41 11-51 57-97 (117)
35 1q08_A Zn(II)-responsive regul 55.2 31 0.0011 20.7 6.7 11 17-27 17-27 (99)
36 2uwj_E Type III export protein 55.2 37 0.0013 21.5 6.5 42 19-60 17-67 (70)
37 3ajw_A Flagellar FLIJ protein; 54.9 35 0.0012 21.7 5.6 31 22-52 24-54 (150)
38 3gpv_A Transcriptional regulat 51.5 20 0.0007 23.8 4.1 27 31-57 102-128 (148)
39 1pzw_A Transcription factor gr 51.2 26 0.0009 20.1 4.1 28 34-61 53-80 (80)
40 3u59_A Tropomyosin beta chain; 49.4 47 0.0016 21.0 6.3 34 26-59 64-97 (101)
41 3l9o_A ATP-dependent RNA helic 49.4 6.9 0.00024 34.1 1.8 67 20-86 647-717 (1108)
42 3us6_A Histidine-containing ph 49.1 18 0.00062 24.4 3.6 50 7-60 82-133 (153)
43 4ani_A Protein GRPE; chaperone 49.1 46 0.0016 24.4 6.0 40 20-59 59-98 (213)
44 1fxk_A Prefoldin; archaeal pro 48.7 39 0.0013 20.7 4.8 42 11-52 52-93 (107)
45 3gpv_A Transcriptional regulat 47.9 58 0.002 21.6 6.2 11 17-27 74-84 (148)
46 3rrk_A V-type ATPase 116 kDa s 47.3 65 0.0022 23.5 6.6 44 18-61 93-139 (357)
47 1t3j_A Mitofusin 1; coiled coi 47.0 59 0.002 21.4 5.9 30 31-60 47-76 (96)
48 1l8d_A DNA double-strand break 46.4 51 0.0017 20.5 6.6 50 8-57 47-97 (112)
49 1zxa_A CGMP-dependent protein 46.1 29 0.00099 21.6 3.9 35 29-63 16-50 (67)
50 2vs0_A Virulence factor ESXA; 45.8 43 0.0015 19.4 5.2 28 17-44 6-33 (97)
51 3u1c_A Tropomyosin alpha-1 cha 45.8 56 0.0019 20.8 6.3 17 42-58 80-96 (101)
52 2dq0_A Seryl-tRNA synthetase; 45.7 49 0.0017 26.2 6.1 21 52-75 98-118 (455)
53 2zvf_A Alanyl-tRNA synthetase; 45.6 39 0.0013 22.3 4.7 39 12-50 18-58 (171)
54 3gp4_A Transcriptional regulat 45.1 64 0.0022 21.3 6.2 16 33-48 90-105 (142)
55 3va9_A Sensor histidine kinase 45.0 25 0.00084 23.2 3.7 31 28-58 52-82 (164)
56 2djv_A Methionyl-tRNA syntheta 44.9 36 0.0012 21.3 4.2 52 7-58 3-64 (79)
57 3twe_A Alpha4H; unknown functi 44.6 16 0.00053 19.4 2.1 17 49-65 9-25 (27)
58 2y7c_A Type-1 restriction enzy 44.2 81 0.0028 22.7 6.6 39 18-56 161-199 (464)
59 1tu3_F RAB GTPase binding effe 44.1 26 0.00087 22.8 3.5 40 21-60 9-48 (79)
60 2wt7_A Proto-oncogene protein 43.5 48 0.0017 19.4 5.2 39 23-64 15-53 (63)
61 3u59_A Tropomyosin beta chain; 43.2 61 0.0021 20.5 6.2 38 24-61 20-57 (101)
62 4fla_A Regulation of nuclear P 42.5 82 0.0028 21.8 7.2 47 13-59 61-107 (152)
63 3nr7_A DNA-binding protein H-N 42.4 64 0.0022 20.5 6.7 34 15-48 22-55 (86)
64 1dh3_A Transcription factor CR 42.4 49 0.0017 19.2 6.2 42 22-66 13-54 (55)
65 1t3j_A Mitofusin 1; coiled coi 41.9 73 0.0025 21.0 6.2 40 21-60 44-83 (96)
66 3ibp_A Chromosome partition pr 40.3 67 0.0023 25.2 5.9 47 18-64 11-57 (302)
67 1wlq_A Geminin; coiled-coil; 2 39.6 76 0.0026 20.6 6.0 19 20-38 20-38 (83)
68 1fxk_C Protein (prefoldin); ar 39.0 50 0.0017 21.2 4.4 37 13-49 76-113 (133)
69 1ses_A Seryl-tRNA synthetase; 38.9 74 0.0025 24.8 6.1 37 35-74 75-112 (421)
70 1fd9_A Protein (macrophage inf 38.9 59 0.002 23.1 5.1 54 16-70 52-114 (213)
71 1nkp_A C-MYC, MYC proto-oncoge 38.5 71 0.0024 19.9 6.0 38 23-60 48-85 (88)
72 4e61_A Protein BIM1; EB1-like 38.1 30 0.001 23.2 3.3 35 12-49 2-36 (106)
73 2w6b_A RHO guanine nucleotide 37.6 69 0.0024 19.5 5.0 38 27-64 13-50 (56)
74 1wxp_A THO complex subunit 1; 36.8 24 0.00081 22.5 2.5 43 17-59 41-86 (110)
75 1k8k_E P21, ARP2/3 complex 21 36.6 38 0.0013 24.7 3.8 32 11-42 111-142 (178)
76 1q06_A Transcriptional regulat 36.4 87 0.003 20.3 6.7 11 17-27 58-68 (135)
77 1q2z_A ATP-dependent DNA helic 36.2 25 0.00085 23.1 2.6 29 8-36 1-34 (120)
78 1ykh_B RNA polymerase II holoe 36.0 68 0.0023 21.5 4.8 7 50-56 115-121 (132)
79 1xdx_A Tctex1 light chain prot 35.7 75 0.0026 20.2 4.8 52 15-70 11-66 (114)
80 2wvr_A Geminin; DNA replicatio 35.0 1.2E+02 0.004 22.7 6.3 16 18-33 95-110 (209)
81 1yke_B RNA polymerase II holoe 34.4 71 0.0024 22.0 4.8 14 46-59 111-124 (151)
82 3ghg_A Fibrinogen alpha chain; 34.3 99 0.0034 26.2 6.4 36 25-60 132-188 (562)
83 2dgc_A Protein (GCN4); basic d 34.1 75 0.0025 18.8 5.8 41 22-65 21-61 (63)
84 4ati_A MITF, microphthalmia-as 33.8 25 0.00085 23.2 2.3 32 29-60 79-110 (118)
85 1qsd_A Protein (beta-tubulin b 33.4 80 0.0027 20.6 4.7 29 21-49 12-40 (106)
86 3tso_C RAB11 family-interactin 33.3 94 0.0032 19.8 5.3 50 16-67 13-62 (75)
87 2y7c_A Type-1 restriction enzy 33.3 1.3E+02 0.0046 21.5 6.6 19 18-36 374-392 (464)
88 1uru_A Amphiphysin; endocytosi 33.2 1E+02 0.0035 20.8 5.5 31 33-63 128-158 (244)
89 1r8e_A Multidrug-efflux transp 33.1 1E+02 0.0035 21.2 5.5 33 27-59 82-114 (278)
90 1fad_A Protein (FADD protein); 33.1 36 0.0012 20.8 2.8 41 17-57 37-78 (99)
91 2dq3_A Seryl-tRNA synthetase; 33.0 73 0.0025 24.8 5.2 22 51-75 96-117 (425)
92 1yvi_A Histidine-containing ph 32.5 39 0.0013 22.3 3.1 50 7-60 83-134 (149)
93 3thf_A Protein shroom; coiled- 32.0 1.2E+02 0.0041 22.3 5.8 40 22-61 17-56 (190)
94 4a4z_A Antiviral helicase SKI2 31.6 23 0.0008 30.4 2.3 63 24-86 547-617 (997)
95 3qne_A Seryl-tRNA synthetase, 31.4 1.1E+02 0.0037 24.8 6.1 39 34-75 81-120 (485)
96 3teq_A Stromal interaction mol 31.3 85 0.0029 20.9 4.6 25 22-46 66-90 (101)
97 1xou_B Z5138 gene product; coi 30.8 70 0.0024 21.1 4.0 29 35-63 16-44 (95)
98 3err_A Fusion protein of micro 30.7 1.1E+02 0.0038 24.8 6.0 43 29-74 178-221 (536)
99 1wle_A Seryl-tRNA synthetase; 30.7 1.1E+02 0.0039 24.6 6.1 39 33-74 125-164 (501)
100 2p4w_A Transcriptional regulat 30.4 1.3E+02 0.0045 20.8 5.7 33 17-49 115-147 (202)
101 1gd2_E Transcription factor PA 29.9 99 0.0034 19.0 5.2 38 26-63 24-65 (70)
102 3sjd_D Golgi to ER traffic pro 29.8 88 0.003 18.4 4.3 24 11-34 8-31 (46)
103 1r8d_A Transcription activator 29.8 79 0.0027 19.5 4.1 20 38-57 82-101 (109)
104 3ls0_A SLL1638 protein, PSBQ; 29.7 49 0.0017 22.9 3.3 32 17-49 17-49 (133)
105 1fpo_A HSC20, chaperone protei 29.5 1.2E+02 0.0042 20.6 5.4 37 22-59 114-150 (171)
106 3a2a_A Voltage-gated hydrogen 28.7 1E+02 0.0035 18.8 5.2 36 27-62 14-49 (58)
107 1nlw_A MAD protein, MAX dimeri 28.4 1.1E+02 0.0036 18.8 6.1 41 20-60 40-80 (80)
108 1nkp_B MAX protein, MYC proto- 28.0 1E+02 0.0035 18.5 6.3 20 42-61 62-81 (83)
109 3lss_A Seryl-tRNA synthetase; 27.8 1.4E+02 0.0049 24.1 6.2 38 35-75 115-153 (484)
110 1b04_A Protein (DNA ligase); D 27.7 1E+02 0.0036 23.6 5.2 33 29-61 6-48 (318)
111 3hho_A CO-chaperone protein HS 27.2 1.4E+02 0.0049 20.2 5.4 38 22-60 118-155 (174)
112 3m4w_E Sigma-E factor negative 27.1 39 0.0013 22.4 2.3 49 5-59 20-68 (96)
113 3u0c_A Invasin IPAB, 62 kDa an 26.9 1.9E+02 0.0064 21.4 6.2 42 24-65 100-141 (201)
114 3zsu_A TLL2057 protein, cyanoq 26.8 37 0.0013 23.4 2.2 32 17-49 15-46 (130)
115 4etp_A Kinesin-like protein KA 26.7 1.8E+02 0.0062 22.5 6.4 52 22-73 15-70 (403)
116 1wlq_A Geminin; coiled-coil; 2 26.6 1.3E+02 0.0045 19.4 5.9 32 29-60 43-74 (83)
117 2olt_A Hypothetical protein; s 26.5 72 0.0025 21.8 3.7 27 53-80 54-80 (227)
118 3fav_B ESAT-6, 6 kDa early sec 26.2 1E+02 0.0035 17.9 4.3 23 20-42 8-30 (94)
119 3e1r_A Centrosomal protein of 26.2 1.2E+02 0.004 18.6 6.0 46 18-63 4-49 (58)
120 1r8e_A Multidrug-efflux transp 26.1 1.2E+02 0.0042 20.8 4.9 10 37-46 99-108 (278)
121 1h7c_A Tubulin-specific chaper 26.0 1.4E+02 0.0048 19.4 6.1 44 19-62 13-66 (108)
122 1vf7_A Multidrug resistance pr 26.0 1.9E+02 0.0066 21.1 7.2 72 12-84 70-159 (369)
123 1naf_A ADP-ribosylation factor 25.8 1.7E+02 0.0058 20.4 5.9 48 18-65 30-77 (158)
124 1ta8_A DNA ligase, NAD-depende 25.8 1.3E+02 0.0043 23.3 5.3 32 29-60 11-52 (332)
125 2zhg_A Redox-sensitive transcr 25.5 1.5E+02 0.0051 19.7 5.1 19 42-60 101-119 (154)
126 2wg5_A General control protein 25.4 1.1E+02 0.0037 19.7 4.2 10 52-61 28-37 (109)
127 2vz4_A Tipal, HTH-type transcr 25.3 67 0.0023 19.9 3.1 10 17-26 59-68 (108)
128 3vmx_A Voltage-gated hydrogen 25.2 1.1E+02 0.0038 18.0 5.2 33 28-60 8-40 (48)
129 1z23_A CRK-associated substrat 25.2 1.9E+02 0.0063 20.6 6.4 43 18-60 53-115 (163)
130 3tul_A Cell invasion protein S 25.2 1.9E+02 0.0065 20.7 5.9 42 24-65 52-93 (158)
131 2fyz_A Fusion protein, fusion 24.9 1.2E+02 0.0042 18.4 4.3 11 26-36 19-29 (63)
132 1svf_A Protein (fusion glycopr 24.8 1.2E+02 0.0043 18.4 4.5 29 21-49 25-53 (64)
133 2zxx_A Geminin; coiled-coil, c 24.6 1.4E+02 0.0048 19.0 5.7 12 22-33 18-29 (79)
134 1ci6_A Transcription factor AT 24.6 1.1E+02 0.0039 17.9 5.2 24 41-64 30-53 (63)
135 3oe2_A Peptidyl-prolyl CIS-tra 24.4 28 0.00095 25.2 1.3 67 16-85 63-139 (219)
136 4err_A Autotransporter adhesin 24.3 1.5E+02 0.0053 19.3 5.4 20 14-33 2-21 (90)
137 2x2e_A Dynamin-1; nitration, h 24.2 96 0.0033 22.5 4.2 27 20-46 291-317 (353)
138 2a7v_A Serine hydroxymethyltra 24.1 1.1E+02 0.0039 23.9 4.8 25 10-36 417-441 (490)
139 3qao_A LMO0526 protein, MERR-l 24.0 98 0.0033 22.3 4.2 52 17-68 61-113 (249)
140 3kdq_A Uncharacterized conserv 24.0 1.3E+02 0.0045 20.8 4.7 33 12-44 116-148 (154)
141 3flk_A Tartrate dehydrogenase/ 23.9 43 0.0015 26.2 2.4 31 6-36 292-333 (364)
142 1oxz_A ADP-ribosylation factor 23.9 2E+02 0.0068 20.5 6.2 47 19-65 47-93 (186)
143 3cr3_A PTS-dependent dihydroxy 23.9 1.7E+02 0.0057 20.5 5.3 46 16-61 1-56 (192)
144 3ffl_A Anaphase-promoting comp 23.8 94 0.0032 22.0 4.0 26 39-64 127-152 (167)
145 3rkg_A Magnesium transporter M 23.7 2.1E+02 0.0071 21.3 6.0 39 18-56 214-252 (261)
146 1ygt_A Cytoplasmic dynein ligh 23.5 1.2E+02 0.0041 19.2 4.1 52 15-70 8-63 (111)
147 1l8d_A DNA double-strand break 23.5 1.4E+02 0.0046 18.4 5.8 31 27-57 13-43 (112)
148 3ecd_A Serine hydroxymethyltra 23.2 1.9E+02 0.0067 20.1 5.8 19 18-36 379-397 (425)
149 3m91_A Proteasome-associated A 22.9 1.2E+02 0.0042 17.6 3.8 18 30-47 29-46 (51)
150 3q8t_A Beclin-1; autophagy, AT 22.8 1.5E+02 0.0052 18.7 6.2 38 26-63 34-75 (96)
151 3gwk_C SAG1039, putative uncha 22.8 1.2E+02 0.0042 17.7 6.4 24 20-43 18-41 (98)
152 2yqf_A Ankyrin-1; death domain 22.5 1.2E+02 0.004 19.1 3.9 42 17-58 41-86 (111)
153 3uq8_A DNA ligase; adenylated 22.5 1.7E+02 0.0057 22.5 5.4 31 30-60 3-43 (322)
154 1ezj_A Nucleocapsid phosphopro 22.4 1.6E+02 0.0056 20.0 4.8 39 25-63 60-98 (115)
155 3gp4_A Transcriptional regulat 22.3 1.7E+02 0.0059 19.1 6.7 9 17-25 60-68 (142)
156 3ra3_A P1C; coiled coil domain 22.2 98 0.0034 16.3 3.1 19 26-44 9-27 (28)
157 2l3l_A Tubulin-specific chaper 22.2 87 0.003 20.5 3.3 20 30-49 57-76 (111)
158 3cve_A Homer protein homolog 1 22.1 67 0.0023 20.1 2.6 11 30-40 20-30 (72)
159 2xz3_A Maltose ABC transporter 22.1 2.5E+02 0.0085 20.9 6.3 18 45-62 383-400 (463)
160 1abv_A Delta subunit of the F1 22.1 86 0.003 19.7 3.2 18 22-39 3-20 (134)
161 1ic2_A Tropomyosin alpha chain 22.1 1.4E+02 0.0048 18.0 6.3 39 27-65 34-72 (81)
162 1gu4_A CAAT/enhancer binding p 21.4 1.6E+02 0.0053 18.3 5.5 24 42-65 44-67 (78)
163 3us8_A Isocitrate dehydrogenas 21.3 41 0.0014 26.9 1.8 32 6-37 343-388 (427)
164 3gaa_A Uncharacterized protein 21.3 1.1E+02 0.0039 21.9 4.1 26 17-42 214-239 (252)
165 2gyq_A YCFI, putative structur 21.2 1.5E+02 0.0051 20.6 4.5 39 24-69 46-84 (173)
166 2v0o_A FCHO2, FCH domain only 21.2 2E+02 0.007 19.6 6.6 33 18-50 161-193 (276)
167 2xdj_A Uncharacterized protein 21.2 1.6E+02 0.0055 18.4 6.0 32 26-57 22-53 (83)
168 3ghg_A Fibrinogen alpha chain; 21.1 2.4E+02 0.0083 23.9 6.4 38 21-58 114-151 (562)
169 4glx_A DNA ligase; inhibitor, 21.0 96 0.0033 25.7 4.0 33 28-60 3-45 (586)
170 3hh0_A Transcriptional regulat 21.0 1.9E+02 0.0064 19.1 5.5 12 36-47 92-103 (146)
171 2hhp_A Poly(A) polymerase; tem 20.5 1.5E+02 0.0052 24.1 5.0 52 4-55 4-60 (530)
172 3fav_A ESAT-6-like protein ESX 20.4 1.4E+02 0.0048 17.7 3.8 15 50-64 63-77 (101)
173 3kqg_A Langerin, C-type lectin 20.4 64 0.0022 20.8 2.3 22 25-46 17-38 (182)
174 3aco_A Pacsin2, protein kinase 20.3 2.5E+02 0.0086 20.3 5.8 17 17-33 189-205 (350)
175 3u0c_A Invasin IPAB, 62 kDa an 20.1 2.7E+02 0.0092 20.6 5.9 34 30-63 99-132 (201)
176 2wuj_A Septum site-determining 20.0 1.4E+02 0.0047 17.2 4.2 36 17-62 20-55 (57)
No 1
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=98.77 E-value=1.3e-08 Score=68.28 Aligned_cols=65 Identities=14% Similarity=0.105 Sum_probs=60.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhchhhccccccccccccccccccccc
Q 034685 19 VDDVQKAAKRVQDALLEKQQELERVKEFISDNTNLINLVQKLPEELHHGIMASSFWKSSIFSWAFD 84 (87)
Q Consensus 19 ~~~~~~a~~~~~~ai~~~~~el~~~q~~~~Dy~~l~~~L~~LPdkLsh~IMV~PfGk~AfmPG~Lv 84 (87)
+++.......+++-+..+++++++|+...+||+.+++.|+.|+++-++++|| |+|..+|+||++.
T Consensus 3 ~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~~~~~~~~lv-plg~~~yv~a~i~ 67 (133)
T 1fxk_C 3 LAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLV-PVGAGSFIKAELK 67 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEE-EEETTEEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCeEEE-EcCCCcEEEEEEC
Confidence 4567778889999999999999999999999999999999999877899999 9999999999986
No 2
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=98.26 E-value=8.7e-07 Score=60.95 Aligned_cols=62 Identities=15% Similarity=0.093 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHhhchhhccccccccccccccccccccc
Q 034685 21 DVQKAAKRVQDALLEKQQELERV---KEFISDNTNLINLVQKLPEELHHGIMASSFWKSSIFSWAFD 84 (87)
Q Consensus 21 ~~~~a~~~~~~ai~~~~~el~~~---q~~~~Dy~~l~~~L~~LPdkLsh~IMV~PfGk~AfmPG~Lv 84 (87)
........+++-+..+.+.+.+| +.-..||..+++.|..|++ -+++||| |+|..+|+||++.
T Consensus 13 ql~~~~qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l~~l~~l~~-~~~~ilv-plg~~~yv~g~i~ 77 (151)
T 2zdi_C 13 KLAYEYQVLQAQAQILAQNLELLNLAKAEVQTVRETLENLKKIEE-EKPEILV-PIGAGSFLKGVIV 77 (151)
T ss_dssp HHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC-SSCEEEE-ECSSSCEEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CCceEEE-EcCCCeEEEEEEC
Confidence 34444566667778899999999 9999999999999999996 6799999 9999999999986
No 3
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=89.93 E-value=1.6 Score=27.56 Aligned_cols=49 Identities=12% Similarity=0.190 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhchhhccccccccccccc
Q 034685 25 AAKRVQDALLEKQQELERVKEFISDNTNLINLVQKLPEELHHGIMASSFWKS 76 (87)
Q Consensus 25 a~~~~~~ai~~~~~el~~~q~~~~Dy~~l~~~L~~LPdkLsh~IMV~PfGk~ 76 (87)
-..++++.+....++++.++.-.++++.+.+.|..||+. -.|.. ++|+.
T Consensus 14 ~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d--~~vy~-~iG~v 62 (117)
T 2zqm_A 14 QLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDD--AVVYK-TVGTL 62 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTT--CCEEE-EETTE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC--cHhHH-HhhHH
Confidence 355677888999999999999999999999999999974 45788 88854
No 4
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=84.82 E-value=4.9 Score=24.91 Aligned_cols=51 Identities=8% Similarity=0.079 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhchhhccccccccccccc
Q 034685 23 QKAAKRVQDALLEKQQELERVKEFISDNTNLINLVQKLPEELHHGIMASSFWKS 76 (87)
Q Consensus 23 ~~a~~~~~~ai~~~~~el~~~q~~~~Dy~~l~~~L~~LPdkLsh~IMV~PfGk~ 76 (87)
..-..++++.+....++++.++.-.++++.+.+.|..||+. -.|.. ++|+.
T Consensus 7 i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d--~~vy~-~iG~v 57 (107)
T 1fxk_A 7 LAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADD--AEVYK-SSGNI 57 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTT--CCEEE-EETTE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC--chHHH-HHhHH
Confidence 34456777888899999999999999999999999999984 44777 77864
No 5
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=84.54 E-value=2.9 Score=26.93 Aligned_cols=42 Identities=19% Similarity=0.191 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhchhhc
Q 034685 23 QKAAKRVQDALLEKQQELERVKEFISDNTNLINLVQKLPEEL 64 (87)
Q Consensus 23 ~~a~~~~~~ai~~~~~el~~~q~~~~Dy~~l~~~L~~LPdkL 64 (87)
.+++.|+++.+..++.|++.++...+|-..-...|+.+=.+|
T Consensus 10 DKLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l 51 (78)
T 3iv1_A 10 DKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRL 51 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 478899999999999999999999999988887777665444
No 6
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=83.88 E-value=4.9 Score=26.63 Aligned_cols=49 Identities=12% Similarity=0.166 Sum_probs=40.8
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHhHHHHHHHHhhchhh
Q 034685 15 SMFSVDDVQKAAKRVQDALLEKQQELERVK---------------EFISDNTNLINLVQKLPEE 63 (87)
Q Consensus 15 ~~~~~~~~~~a~~~~~~ai~~~~~el~~~q---------------~~~~Dy~~l~~~L~~LPdk 63 (87)
..+.++|+++-+..+++=.+..+++..+|. +|.++|+.++++|+.+-+.
T Consensus 4 a~~dpeElr~Fa~~L~~F~d~Lq~~~~~L~~~f~~L~sWqDqkr~kFee~fe~l~s~l~~f~e~ 67 (94)
T 3fx7_A 4 VQMDTEEVREFVGHLERFKELLREEVNSLSNHFHNLESWRDARRDKFSEVLDNLKSTFNEFDEA 67 (94)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 357899999999999999999988887653 6888999999999887653
No 7
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=81.06 E-value=5.9 Score=25.19 Aligned_cols=48 Identities=17% Similarity=0.289 Sum_probs=38.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhchhhcc
Q 034685 18 SVDDVQKAAKRVQDALLEKQQELERVKEFISDNTNLINLVQKLPEELH 65 (87)
Q Consensus 18 ~~~~~~~a~~~~~~ai~~~~~el~~~q~~~~Dy~~l~~~L~~LPdkLs 65 (87)
++.+++.+..+-.+.|....+.|+.+++-.++.++.+..|+.--||+.
T Consensus 20 ti~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 20 SLRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 366777777666666778888899999999999999999988777763
No 8
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=79.59 E-value=4.8 Score=28.11 Aligned_cols=35 Identities=29% Similarity=0.412 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhchh
Q 034685 25 AAKRVQDALLEKQQELERVKEFISDNTNLINLVQKLPE 62 (87)
Q Consensus 25 a~~~~~~ai~~~~~el~~~q~~~~Dy~~l~~~L~~LPd 62 (87)
...+++..+++|+..+.|++.++.+ |.+.+++|||
T Consensus 115 ~l~e~e~~leeyK~Kl~rv~~vkke---L~~hi~sLPD 149 (152)
T 4fla_A 115 VLSEKEKKLEEYKQKLARVTQVRKE---LKSHIQSLPD 149 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhcCCc
Confidence 3445555666666666666666654 3345566676
No 9
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=77.20 E-value=6.3 Score=28.95 Aligned_cols=39 Identities=13% Similarity=0.356 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhch
Q 034685 23 QKAAKRVQDALLEKQQELERVKEFISDNTNLINLVQKLP 61 (87)
Q Consensus 23 ~~a~~~~~~ai~~~~~el~~~q~~~~Dy~~l~~~L~~LP 61 (87)
.+..+++++.+.+.++++..+-....+|+++.+++..|-
T Consensus 71 erQ~~~LR~r~~~Le~~L~~Li~~A~~Ne~l~~~~~~l~ 109 (252)
T 3e98_A 71 ERQVRLLRERNIEMRHRLSQLMDVARENDRLFDKTRRLV 109 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344788999999999999999999999999988876553
No 10
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=75.66 E-value=12 Score=24.38 Aligned_cols=37 Identities=16% Similarity=0.300 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 034685 21 DVQKAAKRVQDALLEKQQELERVKEFISDNTNLINLV 57 (87)
Q Consensus 21 ~~~~a~~~~~~ai~~~~~el~~~q~~~~Dy~~l~~~L 57 (87)
.+.++.+.+.+-|...+++|+++++-++....-+..|
T Consensus 41 qL~~LKkkl~~el~~h~~ei~~le~~i~rhk~~i~~l 77 (84)
T 1gmj_A 41 QLAALKKHKENEISHHAKEIERLQKEIERHKQSIKKL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455566666667777777777776665544444433
No 11
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=71.04 E-value=12 Score=21.91 Aligned_cols=29 Identities=17% Similarity=0.370 Sum_probs=22.0
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034685 17 FSVDDVQKAAKRVQDALLEKQQELERVKE 45 (87)
Q Consensus 17 ~~~~~~~~a~~~~~~ai~~~~~el~~~q~ 45 (87)
..+++++.+++++.....+++..+.+|+.
T Consensus 9 v~~e~l~~~A~~~~~~~~~i~~~l~~L~~ 37 (93)
T 4ioe_A 9 ITPEELERIAGNFKNAAGEAQSQINRLEG 37 (93)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888888888777777766653
No 12
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=70.95 E-value=8.5 Score=24.95 Aligned_cols=36 Identities=22% Similarity=0.240 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhchh
Q 034685 27 KRVQDALLEKQQELERVKEFISDNTNLINLVQKLPE 62 (87)
Q Consensus 27 ~~~~~ai~~~~~el~~~q~~~~Dy~~l~~~L~~LPd 62 (87)
..+++.....+++..+.+.+..+|..|..++++|=.
T Consensus 42 ~~Lq~e~~r~~e~e~r~k~le~~n~~l~~riqELE~ 77 (83)
T 4ath_A 42 RKLQREQQRAKDLENRQKKLEHANRHLLLRVQELEM 77 (83)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 355677778888889999999999999999998843
No 13
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=68.09 E-value=20 Score=25.60 Aligned_cols=41 Identities=15% Similarity=0.159 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhch
Q 034685 21 DVQKAAKRVQDALLEKQQELERVKEFISDNTNLINLVQKLP 61 (87)
Q Consensus 21 ~~~~a~~~~~~ai~~~~~el~~~q~~~~Dy~~l~~~L~~LP 61 (87)
++..-..+.++.|..++++|+.|......|.+|.+|=..+=
T Consensus 9 ~Le~Ek~~~~~rI~~K~~~LqeL~~Q~vafknLv~RN~~~e 49 (155)
T 2aze_A 9 NLEVERQRRLERIKQKQSQLQELILQQIAFKNLVQRNRHAE 49 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566778888888888888888888888888766553
No 14
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=66.90 E-value=24 Score=24.08 Aligned_cols=40 Identities=30% Similarity=0.356 Sum_probs=35.1
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 034685 16 MFSVDDVQKAAKRVQDALLEKQQELERVKEFISDNTNLIN 55 (87)
Q Consensus 16 ~~~~~~~~~a~~~~~~ai~~~~~el~~~q~~~~Dy~~l~~ 55 (87)
.|.-++-...++.++..+.+++.+|...++.++.|+.+..
T Consensus 67 ~~yk~~y~~l~k~Y~~~~keLd~~ik~qekiIdnFE~ik~ 106 (119)
T 3etw_A 67 RFYKSQYQELASKYEDALKKLEAEMEQQKAVISDFEKIQA 106 (119)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667788899999999999999999999999999987754
No 15
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=66.88 E-value=17 Score=21.34 Aligned_cols=29 Identities=7% Similarity=0.210 Sum_probs=20.5
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034685 17 FSVDDVQKAAKRVQDALLEKQQELERVKE 45 (87)
Q Consensus 17 ~~~~~~~~a~~~~~~ai~~~~~el~~~q~ 45 (87)
..+++++.++.++.....+.+..+.+|+.
T Consensus 9 v~~~~l~~~A~~~~~~~~~i~~~l~~L~~ 37 (99)
T 3zbh_A 9 LTPEELRGVARQYNVESSNVTELIARLDQ 37 (99)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888777777776666665544
No 16
>1zw0_A Type III secretion protein; chaperone, translocation, export; 1.80A {Yersinia pestis} PDB: 2p58_A
Probab=66.32 E-value=16 Score=22.97 Aligned_cols=45 Identities=11% Similarity=0.191 Sum_probs=36.7
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHhHHHHHHHHhhch
Q 034685 17 FSVDDVQKAAKRVQDALLEKQQEL---------ERVKEFISDNTNLINLVQKLP 61 (87)
Q Consensus 17 ~~~~~~~~a~~~~~~ai~~~~~el---------~~~q~~~~Dy~~l~~~L~~LP 61 (87)
.+.+.++.+..++.+|+.+++.++ +.|++-.+-|++.+.-+.++-
T Consensus 9 ~~~d~~~~i~~~l~qAl~~vKRqL~~G~~pqqYQ~~q~q~~A~eaal~Iie~~~ 62 (66)
T 1zw0_A 9 HNVETVRSITMQLEMALTKLKKDMMRGGDAKQYQVWQRESKALESAIAIIHYVA 62 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346788999999999999998665 679998888998887777653
No 17
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=66.29 E-value=23 Score=22.73 Aligned_cols=42 Identities=21% Similarity=0.244 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhchhh
Q 034685 22 VQKAAKRVQDALLEKQQELERVKEFISDNTNLINLVQKLPEE 63 (87)
Q Consensus 22 ~~~a~~~~~~ai~~~~~el~~~q~~~~Dy~~l~~~L~~LPdk 63 (87)
.-.|.+++.++=.++++.-++..+...+..+|..+++.|.+.
T Consensus 18 ~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~e 59 (101)
T 3u1c_A 18 KENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDS 59 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 344555666555555555566666666666666666655544
No 18
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=65.76 E-value=5.2 Score=27.32 Aligned_cols=16 Identities=13% Similarity=0.306 Sum_probs=7.9
Q ss_pred HHHHHHHhhchhhccc
Q 034685 51 TNLINLVQKLPEELHH 66 (87)
Q Consensus 51 ~~l~~~L~~LPdkLsh 66 (87)
+.+.+.+..+|-..+|
T Consensus 185 ~~l~~~~~~~~~~~~~ 200 (203)
T 3qks_A 185 KEYRDILARTEGGHHH 200 (203)
T ss_dssp HHHHHHHHTTCSSCC-
T ss_pred HHHHHHHhhccCCccc
Confidence 3444555556655544
No 19
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=65.45 E-value=16 Score=23.46 Aligned_cols=23 Identities=30% Similarity=0.330 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 034685 27 KRVQDALLEKQQELERVKEFISD 49 (87)
Q Consensus 27 ~~~~~ai~~~~~el~~~q~~~~D 49 (87)
+++...+.+.|+||++|+..+..
T Consensus 6 KeL~~kl~~Kq~EI~rLnvlvgs 28 (74)
T 2q6q_A 6 KELNFKLREKQNEIFELKKIAET 28 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777788888888888765543
No 20
>4i0x_A ESAT-6-like protein MAB_3112; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=65.40 E-value=13 Score=22.69 Aligned_cols=30 Identities=13% Similarity=0.106 Sum_probs=20.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034685 18 SVDDVQKAAKRVQDALLEKQQELERVKEFI 47 (87)
Q Consensus 18 ~~~~~~~a~~~~~~ai~~~~~el~~~q~~~ 47 (87)
+|++++.++.++.....+.+.+|.+++...
T Consensus 1 tpeel~~~a~~~~~~~~~i~~~l~~l~~~v 30 (94)
T 4i0x_A 1 SIDEVGALSKFAASLADQMRAGSNSLDRDV 30 (94)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888777777777776665443
No 21
>3ph0_A ASCE; type III secretion system, chapero; 2.40A {Aeromonas hydrophila} PDB: 2q1k_A
Probab=64.14 E-value=24 Score=22.18 Aligned_cols=43 Identities=12% Similarity=0.132 Sum_probs=35.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHhHHHHHHHHhhc
Q 034685 18 SVDDVQKAAKRVQDALLEKQQEL---------ERVKEFISDNTNLINLVQKL 60 (87)
Q Consensus 18 ~~~~~~~a~~~~~~ai~~~~~el---------~~~q~~~~Dy~~l~~~L~~L 60 (87)
.+.+++++..++.+|+.+|+.++ +.|++-.+-|++.+.-|.++
T Consensus 13 ~~~~~~~i~~~L~qAl~~vKr~L~~G~~pqqyQ~~~~Q~~A~eAal~Iie~~ 64 (67)
T 3ph0_A 13 DPVFARELHAQLVQALGDVKRRLLRGGTQQQYQQWQQEADAIEAGLNIIEKI 64 (67)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34479999999999999999876 57998888898888877664
No 22
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=64.11 E-value=20 Score=21.30 Aligned_cols=29 Identities=7% Similarity=0.228 Sum_probs=21.3
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034685 17 FSVDDVQKAAKRVQDALLEKQQELERVKE 45 (87)
Q Consensus 17 ~~~~~~~~a~~~~~~ai~~~~~el~~~q~ 45 (87)
.++++++.+++++.....+.+..+.+|+.
T Consensus 8 V~~e~l~~~A~~~~~~~~~i~~~l~~L~~ 36 (98)
T 3gwk_C 8 LTPEELRSSAQKYTAGSQQVTEVLNLLTQ 36 (98)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888888777777777666553
No 23
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=63.14 E-value=7.8 Score=28.42 Aligned_cols=38 Identities=16% Similarity=0.180 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhc
Q 034685 23 QKAAKRVQDALLEKQQELERVKEFISDNTNLINLVQKL 60 (87)
Q Consensus 23 ~~a~~~~~~ai~~~~~el~~~q~~~~Dy~~l~~~L~~L 60 (87)
.+--+++++.+.++++++.+++..+.+|+.|.+.|..-
T Consensus 25 ~~eN~~Lk~e~~~l~~~~~~~~~l~~En~rLr~lL~~~ 62 (255)
T 2j5u_A 25 YTENQHLKERLEELAQLESEVADLKKENKDLKESLDIT 62 (255)
T ss_dssp -CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 33345677888889999999999999999999988743
No 24
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=63.10 E-value=23 Score=21.66 Aligned_cols=41 Identities=22% Similarity=0.246 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhch
Q 034685 21 DVQKAAKRVQDALLEKQQELERVKEFISDNTNLINLVQKLP 61 (87)
Q Consensus 21 ~~~~a~~~~~~ai~~~~~el~~~q~~~~Dy~~l~~~L~~LP 61 (87)
|...|.+++.++-.++++.-+++.+..++..+|..+++.|=
T Consensus 14 e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE 54 (81)
T 1ic2_A 14 DKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTE 54 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555555555555555443
No 25
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=62.27 E-value=27 Score=23.99 Aligned_cols=39 Identities=31% Similarity=0.379 Sum_probs=33.3
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 034685 17 FSVDDVQKAAKRVQDALLEKQQELERVKEFISDNTNLIN 55 (87)
Q Consensus 17 ~~~~~~~~a~~~~~~ai~~~~~el~~~q~~~~Dy~~l~~ 55 (87)
|=-++-..+++++.+.+.+...+|...+..+++|+.+..
T Consensus 68 ~yK~eY~~L~KkYk~~~~~Ld~eI~~qe~iI~nFe~Iq~ 106 (119)
T 2avr_X 68 FYKSQYQELASKYEDALKKLEAEMEQQKAVISDFEKIQA 106 (119)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334677888999999999999999999999999998853
No 26
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=62.10 E-value=26 Score=26.75 Aligned_cols=40 Identities=10% Similarity=0.180 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhc
Q 034685 21 DVQKAAKRVQDALLEKQQELERVKEFISDNTNLINLVQKL 60 (87)
Q Consensus 21 ~~~~a~~~~~~ai~~~~~el~~~q~~~~Dy~~l~~~L~~L 60 (87)
.+......+.+|+...+.-.-.|+.+.+||++|++.++.-
T Consensus 258 ~~~~l~~~I~~Ai~al~~l~~~W~~m~~~~~~l~~~I~~~ 297 (346)
T 2nrj_A 258 NINEMHKALDDAINALTYMSTQWHDLDSQYSGVLGHIENA 297 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556667788888888888999999999999999999983
No 27
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=61.54 E-value=28 Score=24.20 Aligned_cols=11 Identities=9% Similarity=-0.227 Sum_probs=7.9
Q ss_pred ccccccccccc
Q 034685 71 SSFWKSSIFSW 81 (87)
Q Consensus 71 ~PfGk~AfmPG 81 (87)
.|||+.+|==+
T Consensus 88 l~~G~v~~R~~ 98 (171)
T 2p2u_A 88 LGFGTIGFRLS 98 (171)
T ss_dssp CSSCBCCCCCC
T ss_pred eCCEEEEEEeC
Confidence 48999988533
No 28
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=61.49 E-value=16 Score=26.05 Aligned_cols=45 Identities=13% Similarity=0.080 Sum_probs=29.2
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhc
Q 034685 15 SMFSVDDVQKAAKRVQDALLEKQQELERVKEFISDNTNLINLVQKL 60 (87)
Q Consensus 15 ~~~~~~~~~~a~~~~~~ai~~~~~el~~~q~~~~Dy~~l~~~L~~L 60 (87)
++++.+++.++.+++++.++++.+++...=. ..|++...+.+.+|
T Consensus 146 ~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~-~~d~~~A~~~v~kL 190 (207)
T 3bvo_A 146 EAESEAAMKEIESIVKAKQKEFTDNVSSAFE-QDDFEEAKEILTKM 190 (207)
T ss_dssp HCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHH
Confidence 4556667777777888887777666655433 56677766665544
No 29
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=58.94 E-value=24 Score=21.84 Aligned_cols=43 Identities=9% Similarity=0.198 Sum_probs=29.7
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHhhc
Q 034685 17 FSVDDVQKAAKRVQDALLEKQQELERVKEFIS-------DNTNLINLVQKL 60 (87)
Q Consensus 17 ~~~~~~~~a~~~~~~ai~~~~~el~~~q~~~~-------Dy~~l~~~L~~L 60 (87)
+|-.+. |-.+.++..|+...+++..++.-.+ |++.+...+..|
T Consensus 16 LSykeq-rEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l 65 (89)
T 2lw1_A 16 LSYKLQ-RELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADM 65 (89)
T ss_dssp CCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHH
T ss_pred CCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHH
Confidence 455554 4457888999999999999888664 566665555444
No 30
>1rw2_A ATP-dependent DNA helicase II, 80 kDa subunit; KU80, NHEJ, structure, DNA-PK, DNA binding protein; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=58.88 E-value=34 Score=23.70 Aligned_cols=57 Identities=18% Similarity=0.239 Sum_probs=38.8
Q ss_pred CCCCcccccccccCChhHHHHHHHH----HHHHHHHHHHHHHHHHHH--HHhHHHHHHHHhhc
Q 034685 4 PTAKGTVTSLSSMFSVDDVQKAAKR----VQDALLEKQQELERVKEF--ISDNTNLINLVQKL 60 (87)
Q Consensus 4 ~~~kgt~tpl~~~~~~~~~~~a~~~----~~~ai~~~~~el~~~q~~--~~Dy~~l~~~L~~L 60 (87)
....|.|+-+++.=|++|-.++..+ +++|+.+.+..|.++-.- ...|+...+.|..|
T Consensus 22 ~l~~~~v~~Ig~~nPv~DFk~lL~~~~~~~~~A~~qM~~vI~~Ll~~s~~~~y~KA~ecL~~l 84 (152)
T 1rw2_A 22 SLAEGSVTSVGSVNPAENFRVLVKQKKASFEEASNQLINHIEQFLDTNETPYFMKSIDCIRAF 84 (152)
T ss_dssp CSSSSSSCSSSSSCTTHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHH
T ss_pred HhccCCCceeCCCCcHHHHHHHHHcCchhHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 3456778888888888888777643 777777777777777331 24666666666654
No 31
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=57.62 E-value=22 Score=24.89 Aligned_cols=42 Identities=14% Similarity=0.200 Sum_probs=32.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhc
Q 034685 18 SVDDVQKAAKRVQDALLEKQQELERVKEFISDNTNLINLVQKL 60 (87)
Q Consensus 18 ~~~~~~~a~~~~~~ai~~~~~el~~~q~~~~Dy~~l~~~L~~L 60 (87)
+.+++.++..++++.+.+|.+++++.-. ..||+...+.+.+|
T Consensus 119 ~~~~l~~l~~~~~~~~~~~~~~l~~~~~-~~d~~~A~~~~~kL 160 (181)
T 3uo3_A 119 DEAGVKLLEKQNKERIQDIEAQLGQCYN-DKDYAAAVKLTVEL 160 (181)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHH
Confidence 4567788888889999999888887665 45888888777665
No 32
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=57.10 E-value=42 Score=23.88 Aligned_cols=42 Identities=24% Similarity=0.277 Sum_probs=31.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhh
Q 034685 18 SVDDVQKAAKRVQDALLEKQQELERVKEFISDNTNLINLVQK 59 (87)
Q Consensus 18 ~~~~~~~a~~~~~~ai~~~~~el~~~q~~~~Dy~~l~~~L~~ 59 (87)
|..|.+++-.+-...++..+++.++||+...-+.++++++++
T Consensus 3 s~qe~~~Le~Ek~~~~~rI~~K~~~LqeL~~Q~vafknLv~R 44 (155)
T 2aze_A 3 FAQECQNLEVERQRRLERIKQKQSQLQELILQQIAFKNLVQR 44 (155)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445777777777777777777777788777777777777765
No 33
>3tkl_B LIDA protein, substrate of the DOT/ICM system; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Legionella pneumophila}
Probab=56.69 E-value=2.3 Score=32.87 Aligned_cols=41 Identities=29% Similarity=0.370 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhchh
Q 034685 22 VQKAAKRVQDALLEKQQELERVKEFISDNTNLINLVQKLPE 62 (87)
Q Consensus 22 ~~~a~~~~~~ai~~~~~el~~~q~~~~Dy~~l~~~L~~LPd 62 (87)
+.+|-+++++++.++.+-|.|.|.-+.-++.|-++|..|-.
T Consensus 9 ~~~a~ke~q~~~~~ye~ai~~~qen~~k~e~L~~rl~kLE~ 49 (267)
T 3tkl_B 9 TSQADKEIQKMLDEYEQAIKRAQENIKKGEELEKKLDKLER 49 (267)
T ss_dssp -----------------------------------------
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 44555666666666666666666666667888888877654
No 34
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=56.40 E-value=24 Score=21.91 Aligned_cols=41 Identities=7% Similarity=0.131 Sum_probs=29.3
Q ss_pred ccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 034685 11 TSLSSMFSVDDVQKAAKRVQDALLEKQQELERVKEFISDNT 51 (87)
Q Consensus 11 tpl~~~~~~~~~~~a~~~~~~ai~~~~~el~~~q~~~~Dy~ 51 (87)
-++|.+|=.-++..|...+.+.++.+..+++++++-.++.+
T Consensus 57 ~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~ 97 (117)
T 2zqm_A 57 KTVGTLIVKTTKDKAVAELKEKIETLEVRLNALERQEKKLN 97 (117)
T ss_dssp EEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677776667778888888888888877777765554443
No 35
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=55.22 E-value=31 Score=20.66 Aligned_cols=11 Identities=18% Similarity=0.537 Sum_probs=5.9
Q ss_pred CChhHHHHHHH
Q 034685 17 FSVDDVQKAAK 27 (87)
Q Consensus 17 ~~~~~~~~a~~ 27 (87)
||.+|.+...+
T Consensus 17 fsL~eIk~~l~ 27 (99)
T 1q08_A 17 FSLESIRELLS 27 (99)
T ss_dssp CCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 55555555443
No 36
>2uwj_E Type III export protein PSCE; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=55.16 E-value=37 Score=21.48 Aligned_cols=42 Identities=19% Similarity=0.222 Sum_probs=34.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHhHHHHHHHHhhc
Q 034685 19 VDDVQKAAKRVQDALLEKQQEL---------ERVKEFISDNTNLINLVQKL 60 (87)
Q Consensus 19 ~~~~~~a~~~~~~ai~~~~~el---------~~~q~~~~Dy~~l~~~L~~L 60 (87)
+.+++++..++.+|+.+|+.++ +.|++-.+-|++.+.-|.++
T Consensus 17 ~~~~~~i~~~L~qAl~~vKrqL~~G~~pqqyQ~~~qQ~~AieAal~Iie~i 67 (70)
T 2uwj_E 17 GTHAAALRQRLQAALAECRRELARGACPERFQFLQQQARALEGGLGILSQL 67 (70)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5689999999999999998776 56888888888887777654
No 37
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=54.91 E-value=35 Score=21.70 Aligned_cols=31 Identities=3% Similarity=0.197 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 034685 22 VQKAAKRVQDALLEKQQELERVKEFISDNTN 52 (87)
Q Consensus 22 ~~~a~~~~~~ai~~~~~el~~~q~~~~Dy~~ 52 (87)
+...-...+..+...+++|+.+..+.+||..
T Consensus 24 a~~~l~~a~~~~~~~~~~L~~L~~~~~~y~~ 54 (150)
T 3ajw_A 24 AARLLGEMRRGCQQAEEQLKMLIDYQNEYRS 54 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555667777888888888888753
No 38
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=51.49 E-value=20 Score=23.84 Aligned_cols=27 Identities=7% Similarity=-0.029 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 034685 31 DALLEKQQELERVKEFISDNTNLINLV 57 (87)
Q Consensus 31 ~ai~~~~~el~~~q~~~~Dy~~l~~~L 57 (87)
+.+.+.++++++++...+.-+..++.+
T Consensus 102 ~~~~~l~~~i~~L~~~~~~L~~~i~~~ 128 (148)
T 3gpv_A 102 QQEANVLQLIQDTEKNLKKIQQKIAKY 128 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444433333
No 39
>1pzw_A Transcription factor grauzone; dimerization, transcription regulation, treble-CLEF zinc FIN transcription; 2.00A {Drosophila melanogaster} SCOP: g.39.1.10
Probab=51.19 E-value=26 Score=20.06 Aligned_cols=28 Identities=4% Similarity=-0.052 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhch
Q 034685 34 LEKQQELERVKEFISDNTNLINLVQKLP 61 (87)
Q Consensus 34 ~~~~~el~~~q~~~~Dy~~l~~~L~~LP 61 (87)
..|.++++.+-.|..-.....+.|+++|
T Consensus 53 ~~C~~~l~~~~~Fr~~c~~~~~~L~~~~ 80 (80)
T 1pzw_A 53 NVCWTQVSEFHQFYVSIQEAQVIYATTS 80 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 7899999999999999999999999887
No 40
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=49.44 E-value=47 Score=20.99 Aligned_cols=34 Identities=15% Similarity=0.162 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhh
Q 034685 26 AKRVQDALLEKQQELERVKEFISDNTNLINLVQK 59 (87)
Q Consensus 26 ~~~~~~ai~~~~~el~~~q~~~~Dy~~l~~~L~~ 59 (87)
..++.++...+...-.+...-.++..+|.++++-
T Consensus 64 ~e~l~~a~~kLe~~ek~~~~AE~evasLnRriql 97 (101)
T 3u59_A 64 SESVKEAQEKLEQAEKKATDAEAEVASLNRRIQL 97 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333444444455555555553
No 41
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=49.37 E-value=6.9 Score=34.07 Aligned_cols=67 Identities=7% Similarity=0.068 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhHHHHHHHHhhchhhccccccccccccccccccccccc
Q 034685 20 DDVQKAAKRVQDALLEKQQELERV----KEFISDNTNLINLVQKLPEELHHGIMASSFWKSSIFSWAFDTY 86 (87)
Q Consensus 20 ~~~~~a~~~~~~ai~~~~~el~~~----q~~~~Dy~~l~~~L~~LPdkLsh~IMV~PfGk~AfmPG~Lv~~ 86 (87)
-+..+....+++.|.+.+++++.+ .....+|..+.+.|..+=+.+..-++-...+...+-||+||.+
T Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~v~~ 717 (1108)
T 3l9o_A 647 FQNVISVPVMEKKLAELKKDFDGIEVEDEENVKEYHEIEQAIKGYREDVRQVVTHPANALSFLQPGRLVEI 717 (1108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHCCTTEEEEE
T ss_pred HHHhhhhHHHHHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHHHHHHHHHHhChHHHHhhCCCCCEEEE
Confidence 334445555666666666666543 5678889999999988888877666552335556778888753
No 42
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=49.13 E-value=18 Score=24.39 Aligned_cols=50 Identities=14% Similarity=0.171 Sum_probs=33.6
Q ss_pred CcccccccccCChhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhHHHHHHHHhhc
Q 034685 7 KGTVTSLSSMFSVDDVQKAAKRVQDALLEKQQ--ELERVKEFISDNTNLINLVQKL 60 (87)
Q Consensus 7 kgt~tpl~~~~~~~~~~~a~~~~~~ai~~~~~--el~~~q~~~~Dy~~l~~~L~~L 60 (87)
||++-.++ ...+..+..+++++...... -...++..+.+|+.+.+.|+++
T Consensus 82 KGss~~lG----a~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~e~~~v~~~L~~~ 133 (153)
T 3us6_A 82 KGSSASIG----AQRVKNSCVAFRNFCEEQNIDACRRCLQQVKQEYLLVKNKLETL 133 (153)
T ss_dssp HHHHHHHT----CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhc----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666555 34777777777777643322 2456777888888888888765
No 43
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=49.08 E-value=46 Score=24.39 Aligned_cols=40 Identities=10% Similarity=0.144 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhh
Q 034685 20 DDVQKAAKRVQDALLEKQQELERVKEFISDNTNLINLVQK 59 (87)
Q Consensus 20 ~~~~~a~~~~~~ai~~~~~el~~~q~~~~Dy~~l~~~L~~ 59 (87)
+++..+.+++.+.-.+..+-.++|.....||++..+|..+
T Consensus 59 ~e~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~r 98 (213)
T 4ani_A 59 EELAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQ 98 (213)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4454555554444444444455666677888888887654
No 44
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=48.73 E-value=39 Score=20.66 Aligned_cols=42 Identities=10% Similarity=0.028 Sum_probs=29.6
Q ss_pred ccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 034685 11 TSLSSMFSVDDVQKAAKRVQDALLEKQQELERVKEFISDNTN 52 (87)
Q Consensus 11 tpl~~~~~~~~~~~a~~~~~~ai~~~~~el~~~q~~~~Dy~~ 52 (87)
-++|.+|=.-++..|...+.+.++....+++++++-.++-+.
T Consensus 52 ~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~ 93 (107)
T 1fxk_A 52 KSSGNILIRVAKDELTEELQEKLETLQLREKTIERQEERVMK 93 (107)
T ss_dssp EEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667766677788888888888888887777765554443
No 45
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=47.92 E-value=58 Score=21.56 Aligned_cols=11 Identities=0% Similarity=0.305 Sum_probs=5.5
Q ss_pred CChhHHHHHHH
Q 034685 17 FSVDDVQKAAK 27 (87)
Q Consensus 17 ~~~~~~~~a~~ 27 (87)
||.++++++.+
T Consensus 74 ~sL~eIk~~l~ 84 (148)
T 3gpv_A 74 MPIQKIKQFID 84 (148)
T ss_dssp CCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 45555555444
No 46
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=47.31 E-value=65 Score=23.54 Aligned_cols=44 Identities=14% Similarity=0.111 Sum_probs=30.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---HHHHhhch
Q 034685 18 SVDDVQKAAKRVQDALLEKQQELERVKEFISDNTNL---INLVQKLP 61 (87)
Q Consensus 18 ~~~~~~~a~~~~~~ai~~~~~el~~~q~~~~Dy~~l---~~~L~~LP 61 (87)
+.+++....+++.+.+.+..+++.+++.-.+..+.. ++.|..+.
T Consensus 93 ~~~~~e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~~~~l~~L~p~~ 139 (357)
T 3rrk_A 93 SLEEAEAVLRPVASRAEVLGKERAALEEEIQTIELFGKAAEKLAALA 139 (357)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhh
Confidence 356777777777777777777777777777777666 55555333
No 47
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=47.03 E-value=59 Score=21.42 Aligned_cols=30 Identities=17% Similarity=0.148 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHhhc
Q 034685 31 DALLEKQQELERVKEFISDNTNLINLVQKL 60 (87)
Q Consensus 31 ~ai~~~~~el~~~q~~~~Dy~~l~~~L~~L 60 (87)
++-.+...||.++.+-+.-.+.+++....|
T Consensus 47 ~t~~eL~~EI~~L~~eI~~LE~iqs~aK~L 76 (96)
T 1t3j_A 47 MTQKHLEEEIARLSKEIDQLEKMQNNSKLL 76 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 333444445555555555555555554444
No 48
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=46.41 E-value=51 Score=20.47 Aligned_cols=50 Identities=6% Similarity=0.056 Sum_probs=34.3
Q ss_pred cccccc-cccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 034685 8 GTVTSL-SSMFSVDDVQKAAKRVQDALLEKQQELERVKEFISDNTNLINLV 57 (87)
Q Consensus 8 gt~tpl-~~~~~~~~~~~a~~~~~~ai~~~~~el~~~q~~~~Dy~~l~~~L 57 (87)
|..-|+ ++-++++......+.++..+.+.+.++..++.-.++.+.-++.|
T Consensus 47 g~~CPvCgs~l~~~~~~~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l 97 (112)
T 1l8d_A 47 KGKCPVCGRELTDEHREELLSKYHLDLNNSKNTLAKLIDRKSELERELRRI 97 (112)
T ss_dssp SEECTTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555565 35566777777888888888888888887776666665544433
No 49
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=46.12 E-value=29 Score=21.56 Aligned_cols=35 Identities=11% Similarity=0.265 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhchhh
Q 034685 29 VQDALLEKQQELERVKEFISDNTNLINLVQKLPEE 63 (87)
Q Consensus 29 ~~~ai~~~~~el~~~q~~~~Dy~~l~~~L~~LPdk 63 (87)
..++|..+.+.+..|+...++.++.|+.|...=||
T Consensus 16 ~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK 50 (67)
T 1zxa_A 16 FAKILMLKEERIKELEKRLSEKEEEIQELKRKLHK 50 (67)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444544444444444444443333
No 50
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=45.77 E-value=43 Score=19.43 Aligned_cols=28 Identities=11% Similarity=0.165 Sum_probs=16.9
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 034685 17 FSVDDVQKAAKRVQDALLEKQQELERVK 44 (87)
Q Consensus 17 ~~~~~~~~a~~~~~~ai~~~~~el~~~q 44 (87)
..+++++.++.++.....+.+..+.+++
T Consensus 6 v~~~~l~~~A~~~~~~~~~l~~~l~~L~ 33 (97)
T 2vs0_A 6 MSPEEIRAKSQSYGQGSDQIRQILSDLT 33 (97)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777666666655555555443
No 51
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=45.75 E-value=56 Score=20.83 Aligned_cols=17 Identities=18% Similarity=0.110 Sum_probs=7.5
Q ss_pred HHHHHHHhHHHHHHHHh
Q 034685 42 RVKEFISDNTNLINLVQ 58 (87)
Q Consensus 42 ~~q~~~~Dy~~l~~~L~ 58 (87)
+...-.++..+|.++++
T Consensus 80 ~~~~aE~ev~~L~Rriq 96 (101)
T 3u1c_A 80 NAAKAESEVASLNRRIQ 96 (101)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333334444444444
No 52
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=45.67 E-value=49 Score=26.19 Aligned_cols=21 Identities=19% Similarity=0.221 Sum_probs=15.2
Q ss_pred HHHHHHhhchhhcccccccccccc
Q 034685 52 NLINLVQKLPEELHHGIMASSFWK 75 (87)
Q Consensus 52 ~l~~~L~~LPdkLsh~IMV~PfGk 75 (87)
.+.+.|..||.-++-+ | |.|+
T Consensus 98 ~~~~~~~~ipN~~~~~--v-P~g~ 118 (455)
T 2dq0_A 98 KIDYYLWRLPNITHPS--V-PVGK 118 (455)
T ss_dssp HHHHHHTTSCCCCCTT--S-CCCS
T ss_pred HHHHHHHhCCCCCCcc--C-CCCC
Confidence 4667788888877776 4 7775
No 53
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=45.58 E-value=39 Score=22.27 Aligned_cols=39 Identities=26% Similarity=0.419 Sum_probs=28.0
Q ss_pred cccccCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 034685 12 SLSSMFS--VDDVQKAAKRVQDALLEKQQELERVKEFISDN 50 (87)
Q Consensus 12 pl~~~~~--~~~~~~a~~~~~~ai~~~~~el~~~q~~~~Dy 50 (87)
-++++|+ ++++....+++.+.+.+.+.++++++.-...+
T Consensus 18 ~~a~~Lk~~~~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~ 58 (171)
T 2zvf_A 18 EASSILRVEPAKLPKTVERFFEEWKDQRKEIERLKSVIADL 58 (171)
T ss_dssp HHHHTTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455565 46888888888888888888888887655554
No 54
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=45.09 E-value=64 Score=21.29 Aligned_cols=16 Identities=13% Similarity=0.333 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 034685 33 LLEKQQELERVKEFIS 48 (87)
Q Consensus 33 i~~~~~el~~~q~~~~ 48 (87)
+.+.++++++++...+
T Consensus 90 ~~~l~~~i~~L~~~~~ 105 (142)
T 3gp4_A 90 RIELKNRIDVMQEALD 105 (142)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444443333
No 55
>3va9_A Sensor histidine kinase; four-alpha-helix bundle, histidine kinase family 9, phosphotransfer, transferase two-component system; 2.30A {Rhodopseudomonas palustris}
Probab=45.04 E-value=25 Score=23.23 Aligned_cols=31 Identities=16% Similarity=0.201 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Q 034685 28 RVQDALLEKQQELERVKEFISDNTNLINLVQ 58 (87)
Q Consensus 28 ~~~~ai~~~~~el~~~q~~~~Dy~~l~~~L~ 58 (87)
.++++..+....+.+++....|+.....+|.
T Consensus 52 pY~~a~~~~~~~l~~L~~l~~dnp~Q~~~l~ 82 (164)
T 3va9_A 52 SYIRARDALAARLDGLRAVLADNPEQIAHID 82 (164)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 3444444444444444444444444443333
No 56
>2djv_A Methionyl-tRNA synthetase; EC 6.1.1.10, WHEP-TRS domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.92 E-value=36 Score=21.26 Aligned_cols=52 Identities=6% Similarity=0.073 Sum_probs=29.8
Q ss_pred CcccccccccCChhHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHhHHHHHHHHh
Q 034685 7 KGTVTSLSSMFSVDDVQKAAKRVQDALLEKQ----------QELERVKEFISDNTNLINLVQ 58 (87)
Q Consensus 7 kgt~tpl~~~~~~~~~~~a~~~~~~ai~~~~----------~el~~~q~~~~Dy~~l~~~L~ 58 (87)
.|++.|-..-=...++.....+..+.|++.+ .+++.|...+.+|..+...--
T Consensus 3 ~~~~~~~~~~~~~~~l~~~V~~QG~~VR~LKa~kA~k~~i~~aV~~Ll~LKa~l~~~tg~~~ 64 (79)
T 2djv_A 3 SGSSGTTAKPQQIQALMDEVTKQGNIVRELKAQKADKNEVAAEVAKLLDLKKQLAVAEGKPP 64 (79)
T ss_dssp CSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTCCT
T ss_pred CCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhccCcHhHhhHHHHHHHHHHHHHHHhcCCCC
Confidence 4555444432233445555555566666555 567777777777777765433
No 57
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=44.56 E-value=16 Score=19.37 Aligned_cols=17 Identities=24% Similarity=0.378 Sum_probs=11.2
Q ss_pred hHHHHHHHHhhchhhcc
Q 034685 49 DNTNLINLVQKLPEELH 65 (87)
Q Consensus 49 Dy~~l~~~L~~LPdkLs 65 (87)
+.+.|+++|.+|-+||.
T Consensus 9 eledlqerlrklrkklr 25 (27)
T 3twe_A 9 ELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 44567777777777663
No 58
>2y7c_A Type-1 restriction enzyme ecoki specificity prote; transferase; 18.00A {Escherichia coli} PDB: 2y7h_A*
Probab=44.22 E-value=81 Score=22.70 Aligned_cols=39 Identities=8% Similarity=0.089 Sum_probs=22.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 034685 18 SVDDVQKAAKRVQDALLEKQQELERVKEFISDNTNLINL 56 (87)
Q Consensus 18 ~~~~~~~a~~~~~~ai~~~~~el~~~q~~~~Dy~~l~~~ 56 (87)
|.+|++++++.+......+.+-++.+++..+-++.+.+.
T Consensus 161 pl~EQ~~Iv~~Ld~~~~~id~~~~~~~~~~~~l~~~k~~ 199 (464)
T 2y7c_A 161 PLAEQKIIAEKLDTLLAQVDSTKARFEQIPQILKRFRQA 199 (464)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888877665554444444444444444444333
No 59
>1tu3_F RAB GTPase binding effector protein 1; rabaptin5, effector-binding, protein transport; HET: GNP; 2.31A {Homo sapiens} SCOP: h.1.27.2
Probab=44.10 E-value=26 Score=22.78 Aligned_cols=40 Identities=18% Similarity=0.126 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhc
Q 034685 21 DVQKAAKRVQDALLEKQQELERVKEFISDNTNLINLVQKL 60 (87)
Q Consensus 21 ~~~~a~~~~~~ai~~~~~el~~~q~~~~Dy~~l~~~L~~L 60 (87)
.+.+...+++..+...+++++.-+.+-.||-.|...|+.=
T Consensus 9 ~Le~~~~e~k~kv~~LQ~eLdtsE~VQrDFVkLSQsLQvq 48 (79)
T 1tu3_F 9 TVEQLMFEEKNKAQRLQTELDVSEQVQRDFVKLSQTLQVQ 48 (79)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677788888999999999999999999998887753
No 60
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=43.51 E-value=48 Score=19.41 Aligned_cols=39 Identities=18% Similarity=0.201 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhchhhc
Q 034685 23 QKAAKRVQDALLEKQQELERVKEFISDNTNLINLVQKLPEEL 64 (87)
Q Consensus 23 ~~a~~~~~~ai~~~~~el~~~q~~~~Dy~~l~~~L~~LPdkL 64 (87)
++.+.+=.+.+.+.+++.+. ...+|..|...+..|-..+
T Consensus 15 ~rcR~rKk~~~~~Le~~v~~---L~~~n~~L~~ei~~L~~e~ 53 (63)
T 2wt7_A 15 AKCRNRRRELTDTLQAETDQ---LEDEKSALQTEIANLLKEK 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555544 4467777777776665543
No 61
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=43.21 E-value=61 Score=20.46 Aligned_cols=38 Identities=21% Similarity=0.289 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhch
Q 034685 24 KAAKRVQDALLEKQQELERVKEFISDNTNLINLVQKLP 61 (87)
Q Consensus 24 ~a~~~~~~ai~~~~~el~~~q~~~~Dy~~l~~~L~~LP 61 (87)
.|.+++.++=.++++.-++..+..++..+|...++.|.
T Consensus 20 ~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE 57 (101)
T 3u59_A 20 NAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTE 57 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33444444433333333334444444444444444333
No 62
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=42.50 E-value=82 Score=21.75 Aligned_cols=47 Identities=17% Similarity=0.241 Sum_probs=29.9
Q ss_pred ccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhh
Q 034685 13 LSSMFSVDDVQKAAKRVQDALLEKQQELERVKEFISDNTNLINLVQK 59 (87)
Q Consensus 13 l~~~~~~~~~~~a~~~~~~ai~~~~~el~~~q~~~~Dy~~l~~~L~~ 59 (87)
|.++=.-++..++.+.+.+|.....+=..+|.+-..|=..|++.|..
T Consensus 61 l~klkDk~~~e~l~~~veeA~~~L~eYn~rL~~E~~dR~~L~~~L~~ 107 (152)
T 4fla_A 61 LEKITDKEAAERLSKTVDEACLLLAEYNGRLAAELEDRRQLARMLVE 107 (152)
T ss_dssp GGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555677777777777766666666666666666666665554
No 63
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=42.43 E-value=64 Score=20.52 Aligned_cols=34 Identities=6% Similarity=0.161 Sum_probs=26.6
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034685 15 SMFSVDDVQKAAKRVQDALLEKQQELERVKEFIS 48 (87)
Q Consensus 15 ~~~~~~~~~~a~~~~~~ai~~~~~el~~~q~~~~ 48 (87)
.=++.+++..+.+++..+|++.+++-+..++-..
T Consensus 22 rel~le~Lee~leKl~~VveERree~~~~~~~~~ 55 (86)
T 3nr7_A 22 RESTLETLEEMLEKLEVVVNERREEESAAAAEVE 55 (86)
T ss_dssp HTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468899999999999999999888666554433
No 64
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=42.36 E-value=49 Score=19.16 Aligned_cols=42 Identities=12% Similarity=0.262 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhchhhccc
Q 034685 22 VQKAAKRVQDALLEKQQELERVKEFISDNTNLINLVQKLPEELHH 66 (87)
Q Consensus 22 ~~~a~~~~~~ai~~~~~el~~~q~~~~Dy~~l~~~L~~LPdkLsh 66 (87)
+++.+.+=++-+.+...++..| ..+|..|...+..|-..++|
T Consensus 13 A~rSR~RKk~~~~~LE~~v~~L---~~eN~~L~~~~~~L~~~~~~ 54 (55)
T 1dh3_A 13 ARESRRKKKEYVKSLENRVAVL---ENQNKTLIEELKALKDLYSH 54 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHTTSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhcc
Confidence 3444445555667776665554 56899999999998887776
No 65
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=41.89 E-value=73 Score=20.98 Aligned_cols=40 Identities=15% Similarity=0.325 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhc
Q 034685 21 DVQKAAKRVQDALLEKQQELERVKEFISDNTNLINLVQKL 60 (87)
Q Consensus 21 ~~~~a~~~~~~ai~~~~~el~~~q~~~~Dy~~l~~~L~~L 60 (87)
.|..+.+.+++-|.+...+|.+++...+....|.+.=.-|
T Consensus 44 ~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L 83 (96)
T 1t3j_A 44 QVDMTQKHLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQL 83 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 5666778888899999999999998888888777754443
No 66
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=40.26 E-value=67 Score=25.16 Aligned_cols=47 Identities=13% Similarity=0.121 Sum_probs=40.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhchhhc
Q 034685 18 SVDDVQKAAKRVQDALLEKQQELERVKEFISDNTNLINLVQKLPEEL 64 (87)
Q Consensus 18 ~~~~~~~a~~~~~~ai~~~~~el~~~q~~~~Dy~~l~~~L~~LPdkL 64 (87)
.+.++...+..+++..++.+++++++.+..--+-++++.|..|-+..
T Consensus 11 ~~~~~~e~r~~lr~~~eql~~~i~~L~~~ap~W~~aq~al~rL~eq~ 57 (302)
T 3ibp_A 11 SVSNAREERMALRQEQEQLQSRIQSLMQRAPVWLAAQNSLNQLSEQC 57 (302)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHh
Confidence 45677888889999999999999999999999999999998887754
No 67
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=39.60 E-value=76 Score=20.56 Aligned_cols=19 Identities=21% Similarity=0.228 Sum_probs=9.2
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 034685 20 DDVQKAAKRVQDALLEKQQ 38 (87)
Q Consensus 20 ~~~~~a~~~~~~ai~~~~~ 38 (87)
.=|..++.+-+.|+.+.-+
T Consensus 20 ~YWk~lAE~Rr~AL~eaL~ 38 (83)
T 1wlq_A 20 QYWKEVAEQRRKALYEALK 38 (83)
T ss_dssp THHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455555555555543333
No 68
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=38.98 E-value=50 Score=21.17 Aligned_cols=37 Identities=11% Similarity=0.197 Sum_probs=23.0
Q ss_pred ccc-cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034685 13 LSS-MFSVDDVQKAAKRVQDALLEKQQELERVKEFISD 49 (87)
Q Consensus 13 l~~-~~~~~~~~~a~~~~~~ai~~~~~el~~~q~~~~D 49 (87)
||. .|=.-....|.+-+...++.+...++.+++....
T Consensus 76 lG~g~~vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~ 113 (133)
T 1fxk_C 76 VGAGVAIKKNFEDAMESIKSQKNELESTLQKMGENLRA 113 (133)
T ss_dssp EETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 453 4444456677777777777777777666654443
No 69
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=38.94 E-value=74 Score=24.77 Aligned_cols=37 Identities=19% Similarity=0.264 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHhH-HHHHHHHhhchhhccccccccccc
Q 034685 35 EKQQELERVKEFISDN-TNLINLVQKLPEELHHGIMASSFW 74 (87)
Q Consensus 35 ~~~~el~~~q~~~~Dy-~~l~~~L~~LPdkLsh~IMV~PfG 74 (87)
+.+++++.+++-..+. +.+.+.|..||.-++-++ |.|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~~~~v---p~g 112 (421)
T 1ses_A 75 ALGEEAKRLEEALREKEARLEALLLQVPLPPWPGA---PVG 112 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCTTS---CSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC---CCC
Confidence 3344444444333332 345667888888777763 666
No 70
>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A*
Probab=38.85 E-value=59 Score=23.15 Aligned_cols=54 Identities=19% Similarity=0.331 Sum_probs=35.2
Q ss_pred cCChhHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHhHHHHHHHHhhchhhccccccc
Q 034685 16 MFSVDDVQKAAKRVQDALLEKQQ---------ELERVKEFISDNTNLINLVQKLPEELHHGIMA 70 (87)
Q Consensus 16 ~~~~~~~~~a~~~~~~ai~~~~~---------el~~~q~~~~Dy~~l~~~L~~LPdkLsh~IMV 70 (87)
.++.++.+.+...+++.+...++ ..+.-++|..+|.. ..-+.++|..|.|.|..
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~v~~~~sGl~y~vl~ 114 (213)
T 1fd9_A 52 ALTEQQMKDVLNKFQKDLMAKRTAEFNKKADENKVKGEAFLTENKN-KPGVVVLPSGLQYKVIN 114 (213)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-STTEEECTTSCEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCCcEECCCccEEEEEe
Confidence 47889999888887776655432 22233444444432 23367899999999987
No 71
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=38.50 E-value=71 Score=19.90 Aligned_cols=38 Identities=16% Similarity=0.182 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhc
Q 034685 23 QKAAKRVQDALLEKQQELERVKEFISDNTNLINLVQKL 60 (87)
Q Consensus 23 ~~a~~~~~~ai~~~~~el~~~q~~~~Dy~~l~~~L~~L 60 (87)
.+|.+.++.--.+.+.-..........++.|...|+.|
T Consensus 48 ~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 48 KKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444433333333333334455668888888888766
No 72
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=38.11 E-value=30 Score=23.24 Aligned_cols=35 Identities=23% Similarity=0.361 Sum_probs=18.0
Q ss_pred cccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034685 12 SLSSMFSVDDVQKAAKRVQDALLEKQQELERVKEFISD 49 (87)
Q Consensus 12 pl~~~~~~~~~~~a~~~~~~ai~~~~~el~~~q~~~~D 49 (87)
||+|+.+ +++-.+..++.|.+..+++..|+...++
T Consensus 2 ~~~s~~a---l~~eL~~~~~ei~~L~~ei~eLk~~ve~ 36 (106)
T 4e61_A 2 PLGSLVA---IQAELTKSQETIGSLNEEIEQYKGTVST 36 (106)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5665443 3333444444555566666665554444
No 73
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=37.62 E-value=69 Score=19.51 Aligned_cols=38 Identities=16% Similarity=0.268 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhchhhc
Q 034685 27 KRVQDALLEKQQELERVKEFISDNTNLINLVQKLPEEL 64 (87)
Q Consensus 27 ~~~~~ai~~~~~el~~~q~~~~Dy~~l~~~L~~LPdkL 64 (87)
=.+++-|.+.+++..++++..++-.....+|.++-.++
T Consensus 13 YaLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~ 50 (56)
T 2w6b_A 13 YALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKV 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777888888888888888888888887765443
No 74
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=36.78 E-value=24 Score=22.48 Aligned_cols=43 Identities=19% Similarity=0.227 Sum_probs=29.1
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHhh
Q 034685 17 FSVDDVQKAAKRVQDALLEKQQELERVKEFI---SDNTNLINLVQK 59 (87)
Q Consensus 17 ~~~~~~~~a~~~~~~ai~~~~~el~~~q~~~---~Dy~~l~~~L~~ 59 (87)
|+..++..+.......-+.|.+-|..|+... .-.+.|++.|..
T Consensus 41 ~~~~~I~~ie~~~~~~~eq~~~mL~~W~~r~G~~AT~~~L~~AL~~ 86 (110)
T 1wxp_A 41 MKDSEIRQIECDSEDMKMRAKQLLVAWQDQEGVHATPENLINALNK 86 (110)
T ss_dssp CCHHHHHHHHHHCSSHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHHHHHhhCcCcHHHHHHHHHHH
Confidence 7777777777555555678899999998775 334555555543
No 75
>1k8k_E P21, ARP2/3 complex 21 kDa subunit, P21-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: a.148.1.1 PDB: 1tyq_E* 1u2v_E* 2p9i_E* 2p9k_E* 2p9l_E 2p9n_E* 2p9p_E* 2p9s_E* 2p9u_E* 3dxk_E* 3dxm_E* 3rse_E
Probab=36.61 E-value=38 Score=24.69 Aligned_cols=32 Identities=13% Similarity=0.169 Sum_probs=27.7
Q ss_pred ccccccCChhHHHHHHHHHHHHHHHHHHHHHH
Q 034685 11 TSLSSMFSVDDVQKAAKRVQDALLEKQQELER 42 (87)
Q Consensus 11 tpl~~~~~~~~~~~a~~~~~~ai~~~~~el~~ 42 (87)
-||.++|..+.-+.-++.+++-+.++++|+..
T Consensus 111 FpLn~~y~~P~~~~e~d~lR~Yl~QlRqEl~~ 142 (178)
T 1k8k_E 111 FPLNAIYAKPANKQEDEVMRAYLQQLRQETGL 142 (178)
T ss_dssp CTTTTTSCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccccccCCCChhHHHHHHHHHHHHHHHHHH
Confidence 48999999887778888899999999999876
No 76
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=36.37 E-value=87 Score=20.29 Aligned_cols=11 Identities=9% Similarity=0.425 Sum_probs=6.2
Q ss_pred CChhHHHHHHH
Q 034685 17 FSVDDVQKAAK 27 (87)
Q Consensus 17 ~~~~~~~~a~~ 27 (87)
||.+++.++.+
T Consensus 58 ~sl~eI~~~l~ 68 (135)
T 1q06_A 58 FNLEESGELVN 68 (135)
T ss_dssp CCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 56666655543
No 77
>1q2z_A ATP-dependent DNA helicase II, 80 kDa subunit; KU, DNA repair, protein structure, spectroscopy, DNA-PK, KU86, KU80, protein binding; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=36.17 E-value=25 Score=23.13 Aligned_cols=29 Identities=10% Similarity=0.228 Sum_probs=15.6
Q ss_pred ccccccccc---C--ChhHHHHHHHHHHHHHHHH
Q 034685 8 GTVTSLSSM---F--SVDDVQKAAKRVQDALLEK 36 (87)
Q Consensus 8 gt~tpl~~~---~--~~~~~~~a~~~~~~ai~~~ 36 (87)
|+++|+... + ..+.+.+|.+.+++.|.++
T Consensus 1 G~~nPv~DFk~ll~~~~~~~~~A~~qm~~vI~~L 34 (120)
T 1q2z_A 1 GPVNPAENFRVLVKQKKASFEEASNQLINHIEQF 34 (120)
T ss_dssp CCCCHHHHHHHHTSSSCCTTTHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHcCchhHHHHHHHHHHHHHHH
Confidence 667775432 3 2234566666666666444
No 78
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=35.99 E-value=68 Score=21.47 Aligned_cols=7 Identities=14% Similarity=0.306 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 034685 50 NTNLINL 56 (87)
Q Consensus 50 y~~l~~~ 56 (87)
-+.+.+.
T Consensus 115 ~e~ll~~ 121 (132)
T 1ykh_B 115 KEKLMRH 121 (132)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 79
>1xdx_A Tctex1 light chain protein; chlamydomonas flagella, tctex1 dimer, solution structure, contractIle protein; NMR {Chlamydomonas reinhardtii}
Probab=35.66 E-value=75 Score=20.23 Aligned_cols=52 Identities=19% Similarity=0.272 Sum_probs=32.3
Q ss_pred ccCChhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhHHHHHHHHhhchhhccccccc
Q 034685 15 SMFSVDDVQKAAKRVQDALLEK----QQELERVKEFISDNTNLINLVQKLPEELHHGIMA 70 (87)
Q Consensus 15 ~~~~~~~~~~a~~~~~~ai~~~----~~el~~~q~~~~Dy~~l~~~L~~LPdkLsh~IMV 70 (87)
.-|++++++.+.+++-+...+. ..+..+|-.-+.| .+.++|..|.. .|++.|
T Consensus 11 ~~f~~~~v~~ii~~~l~~~L~~~~Y~~~~~~~~~~~i~~--~i~~~lk~l~~--~YK~iV 66 (114)
T 1xdx_A 11 AAFVADDVSNIIKESIDAVLQNQQYSEAKVSQWTSSCLE--HCIKRLTALNK--PFKYVV 66 (114)
T ss_dssp CSCCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHH--HHHHHHHHHTC--SSEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHH--HHHHHHHhhCC--CceEEE
Confidence 4599999998887765544222 2455666665554 56667776654 465554
No 80
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=35.01 E-value=1.2e+02 Score=22.72 Aligned_cols=16 Identities=25% Similarity=0.256 Sum_probs=8.1
Q ss_pred ChhHHHHHHHHHHHHH
Q 034685 18 SVDDVQKAAKRVQDAL 33 (87)
Q Consensus 18 ~~~~~~~a~~~~~~ai 33 (87)
|..=|..+|.+-+.|+
T Consensus 95 se~YWk~lAE~RR~AL 110 (209)
T 2wvr_A 95 SSQYWKEVAEKRRKAL 110 (209)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHH
Confidence 3334555555555554
No 81
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=34.44 E-value=71 Score=22.03 Aligned_cols=14 Identities=21% Similarity=0.321 Sum_probs=5.7
Q ss_pred HHHhHHHHHHHHhh
Q 034685 46 FISDNTNLINLVQK 59 (87)
Q Consensus 46 ~~~Dy~~l~~~L~~ 59 (87)
...+-+.+.+.++.
T Consensus 111 ~v~eae~ll~~v~~ 124 (151)
T 1yke_B 111 AIKKKEKLLRHVDS 124 (151)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444444433
No 82
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=34.33 E-value=99 Score=26.20 Aligned_cols=36 Identities=11% Similarity=0.191 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------------------HhHHHHHHHHhhc
Q 034685 25 AAKRVQDALLEKQQELERVKEFI---------------------SDNTNLINLVQKL 60 (87)
Q Consensus 25 a~~~~~~ai~~~~~el~~~q~~~---------------------~Dy~~l~~~L~~L 60 (87)
-.+-+|..|++...+|+||+.-+ .||++++..|..+
T Consensus 132 nIrvLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~QKQLeQv 188 (562)
T 3ghg_A 132 HIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQKQLEQV 188 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchheeecchHHHHHHHHHHHHH
Confidence 33556667777788888887654 4788888777643
No 83
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=34.10 E-value=75 Score=18.84 Aligned_cols=41 Identities=20% Similarity=0.301 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhchhhcc
Q 034685 22 VQKAAKRVQDALLEKQQELERVKEFISDNTNLINLVQKLPEELH 65 (87)
Q Consensus 22 ~~~a~~~~~~ai~~~~~el~~~q~~~~Dy~~l~~~L~~LPdkLs 65 (87)
+++-+.+=++.+.+...+++.| ..+|..|...+..|=..|.
T Consensus 21 ArrsR~RK~~~~~~Le~~v~~L---~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 21 ARRSRARKLQRMKQLEDKVEEL---LSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHh
Confidence 4445555556666666666665 4788888888887766554
No 84
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=33.78 E-value=25 Score=23.20 Aligned_cols=32 Identities=25% Similarity=0.239 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhc
Q 034685 29 VQDALLEKQQELERVKEFISDNTNLINLVQKL 60 (87)
Q Consensus 29 ~~~ai~~~~~el~~~q~~~~Dy~~l~~~L~~L 60 (87)
+++.+...+++..+......+|+.|..+++.|
T Consensus 79 Lq~~~~~l~~~~~~~~~l~~~n~~L~~riqeL 110 (118)
T 4ati_A 79 LQREQQRAKDLENRQKKLEHANRHLLLRVQEL 110 (118)
T ss_dssp HHHHHHHHHHHCC-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444445555667788888877766
No 85
>1qsd_A Protein (beta-tubulin binding post-chaperonin cofactor); four-helix-bundle, chaperone; 2.20A {Saccharomyces cerevisiae} SCOP: a.7.5.1
Probab=33.36 E-value=80 Score=20.64 Aligned_cols=29 Identities=14% Similarity=0.117 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034685 21 DVQKAAKRVQDALLEKQQELERVKEFISD 49 (87)
Q Consensus 21 ~~~~a~~~~~~ai~~~~~el~~~q~~~~D 49 (87)
-+.|+.++..=--.+.+++.++++++++|
T Consensus 12 ~vkRL~KE~~~Y~kE~~~q~~riek~k~~ 40 (106)
T 1qsd_A 12 ALKRLTKEEGYYQQELKDQEAHVAKLKED 40 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45566665544445555555566666554
No 86
>3tso_C RAB11 family-interacting protein 2; RAS GTPase fold (RAB25), vesicle trafficking, endosome, PROT transport; HET: GNP; 1.80A {Homo sapiens} PDB: 2k6s_A
Probab=33.33 E-value=94 Score=19.80 Aligned_cols=50 Identities=14% Similarity=0.360 Sum_probs=38.2
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhchhhcccc
Q 034685 16 MFSVDDVQKAAKRVQDALLEKQQELERVKEFISDNTNLINLVQKLPEELHHG 67 (87)
Q Consensus 16 ~~~~~~~~~a~~~~~~ai~~~~~el~~~q~~~~Dy~~l~~~L~~LPdkLsh~ 67 (87)
-.|-+|+-++.-..+.-|.....++..|+.+++. =|.+-..+=|.-|...
T Consensus 13 ~ltreELi~l~lk~~~~l~~k~~~v~eLEdYID~--LLvRVME~~P~iLq~p 62 (75)
T 3tso_C 13 SLTYEEVLQELVKHKELLRRKDTHIRELEDYIDN--LLVRVMEETPSILRVP 62 (75)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHCGGGGBSS
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhCcHHhhCC
Confidence 3577899999999999999999999999988764 3455556677766643
No 87
>2y7c_A Type-1 restriction enzyme ecoki specificity prote; transferase; 18.00A {Escherichia coli} PDB: 2y7h_A*
Probab=33.29 E-value=1.3e+02 Score=21.53 Aligned_cols=19 Identities=16% Similarity=0.277 Sum_probs=12.5
Q ss_pred ChhHHHHHHHHHHHHHHHH
Q 034685 18 SVDDVQKAAKRVQDALLEK 36 (87)
Q Consensus 18 ~~~~~~~a~~~~~~ai~~~ 36 (87)
|.+|++++++.+.+....+
T Consensus 374 pl~EQ~~Iv~~l~~~~~~i 392 (464)
T 2y7c_A 374 PVKEQAEIVRRVEQLFAYA 392 (464)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 5678888887766654433
No 88
>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1
Probab=33.20 E-value=1e+02 Score=20.84 Aligned_cols=31 Identities=16% Similarity=0.198 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhhchhh
Q 034685 33 LLEKQQELERVKEFISDNTNLINLVQKLPEE 63 (87)
Q Consensus 33 i~~~~~el~~~q~~~~Dy~~l~~~L~~LPdk 63 (87)
+.+.+..+.....-.-||++..++|.++.++
T Consensus 128 ~~~i~~~ikKR~~k~lDyD~~~~~l~kl~~k 158 (244)
T 1uru_A 128 FPEMKKKVEKRNRKLIDYDGQRHSFQNLQAN 158 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3445556666666667888888887777653
No 89
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=33.14 E-value=1e+02 Score=21.23 Aligned_cols=33 Identities=3% Similarity=0.018 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhh
Q 034685 27 KRVQDALLEKQQELERVKEFISDNTNLINLVQK 59 (87)
Q Consensus 27 ~~~~~ai~~~~~el~~~q~~~~Dy~~l~~~L~~ 59 (87)
.-+++.+.+.++++++++...+.-+.+++.++.
T Consensus 82 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~~ 114 (278)
T 1r8e_A 82 AFYTEQERQIREKLDFLSALEQTISLVKKRMKR 114 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666666666666655555555543
No 90
>1fad_A Protein (FADD protein); apoptosis, death domain; NMR {Mus musculus} SCOP: a.77.1.2
Probab=33.12 E-value=36 Score=20.83 Aligned_cols=41 Identities=15% Similarity=0.135 Sum_probs=26.8
Q ss_pred CChhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 034685 17 FSVDDVQKAAKRV-QDALLEKQQELERVKEFISDNTNLINLV 57 (87)
Q Consensus 17 ~~~~~~~~a~~~~-~~ai~~~~~el~~~q~~~~Dy~~l~~~L 57 (87)
|+..++..+..+. .+.-+.|.+-|..|..-......+..++
T Consensus 37 ~~~~~I~~I~~~~~~d~~eq~~~mL~~W~~~~g~~At~~~L~ 78 (99)
T 1fad_A 37 VSEAKMDGIEEKYPRSLSERVRESLKVWKNAEKKNASVAGLV 78 (99)
T ss_dssp CCHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHGGGGSHHHHH
T ss_pred CCHHHHHHHHHHCCCCHHHHHHHHHHHHHhccCCCCcHHHHH
Confidence 6777777777665 3555788888999987764433333333
No 91
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=33.02 E-value=73 Score=24.81 Aligned_cols=22 Identities=18% Similarity=0.172 Sum_probs=16.2
Q ss_pred HHHHHHHhhchhhcccccccccccc
Q 034685 51 TNLINLVQKLPEELHHGIMASSFWK 75 (87)
Q Consensus 51 ~~l~~~L~~LPdkLsh~IMV~PfGk 75 (87)
+.+.+.|..||.-++.+ | |.|+
T Consensus 96 ~~~~~~~~~ipN~~~~~--v-p~g~ 117 (425)
T 2dq3_A 96 EELKNTLLWIPNLPHPS--V-PVGE 117 (425)
T ss_dssp HHHHHHHHTSCCCCCTT--S-CCCS
T ss_pred HHHHHHHHhCCCCCCCC--C-CCCC
Confidence 35677888899887776 4 7775
No 92
>1yvi_A Histidine-containing phosphotransfer protein; structural genomics, protein structure initiative, PSI, CESG, AK104879, phosphorelay mediator, HP1; 2.00A {Oryza sativa} SCOP: a.24.10.2 PDB: 2q4f_A 1wn0_A
Probab=32.50 E-value=39 Score=22.28 Aligned_cols=50 Identities=20% Similarity=0.201 Sum_probs=31.8
Q ss_pred CcccccccccCChhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhHHHHHHHHhhc
Q 034685 7 KGTVTSLSSMFSVDDVQKAAKRVQDALLEK--QQELERVKEFISDNTNLINLVQKL 60 (87)
Q Consensus 7 kgt~tpl~~~~~~~~~~~a~~~~~~ai~~~--~~el~~~q~~~~Dy~~l~~~L~~L 60 (87)
||++-.|| ...+..+..++++..... ..-...++..+.+|+.+.+.|+++
T Consensus 83 KGssa~lG----a~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~e~~~~~~~L~~~ 134 (149)
T 1yvi_A 83 KGSSASVG----AQKVKFTCMQFRQFCQDKSRDGCLMALAVVRNDFYDLRNKFQTM 134 (149)
T ss_dssp HHHHHHHT----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHh----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666665 346666777776655332 222456777778888888887764
No 93
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=31.98 E-value=1.2e+02 Score=22.27 Aligned_cols=40 Identities=15% Similarity=0.136 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhch
Q 034685 22 VQKAAKRVQDALLEKQQELERVKEFISDNTNLINLVQKLP 61 (87)
Q Consensus 22 ~~~a~~~~~~ai~~~~~el~~~q~~~~Dy~~l~~~L~~LP 61 (87)
-..+.+.+...|...+++-+.++.-.++|+++-+.|..+-
T Consensus 17 k~ELi~~L~~kL~~L~~eqe~l~ee~~~N~~lG~~vea~V 56 (190)
T 3thf_A 17 MDELIKHLNQKIVSLKREQQTISEECSANDRLGQDLFAKL 56 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3457788888999999999999999999998888777653
No 94
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=31.58 E-value=23 Score=30.38 Aligned_cols=63 Identities=11% Similarity=0.071 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--------HHHHhHHHHHHHHhhchhhccccccccccccccccccccccc
Q 034685 24 KAAKRVQDALLEKQQELERVK--------EFISDNTNLINLVQKLPEELHHGIMASSFWKSSIFSWAFDTY 86 (87)
Q Consensus 24 ~a~~~~~~ai~~~~~el~~~q--------~~~~Dy~~l~~~L~~LPdkLsh~IMV~PfGk~AfmPG~Lv~~ 86 (87)
+...+.++.+....+++.... .-..+|-.+...+..+-.++...++=+|.+...|-||++|.+
T Consensus 547 ~~~~~~~~~l~~l~~~~~~~~~~~c~~c~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~gr~v~~ 617 (997)
T 4a4z_A 547 TLQPEHEKQIKVLQEELQTIEYKSCEICDNDIEKFLELMLAYKEATVNLMQEMVKSPSILHILKEGRLVAF 617 (997)
T ss_dssp HHHHHHHHHHHHHHHHHHC--------------CHHHHHHHHHHHHHHHHHHHTTSTTHHHHTCTTEEEEE
T ss_pred hhhHHHHHHHHHHHHHHHHhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhcCHhHHhhCCCCCEEEE
Confidence 344445555555555544321 234567788888888888887777766788888899998853
No 95
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=31.39 E-value=1.1e+02 Score=24.84 Aligned_cols=39 Identities=13% Similarity=0.103 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHhH-HHHHHHHhhchhhcccccccccccc
Q 034685 34 LEKQQELERVKEFISDN-TNLINLVQKLPEELHHGIMASSFWK 75 (87)
Q Consensus 34 ~~~~~el~~~q~~~~Dy-~~l~~~L~~LPdkLsh~IMV~PfGk 75 (87)
.+.+++|+.+++-..+. +.+.+.|..||.-++-+ | |.|+
T Consensus 81 ~~l~~~i~~le~~~~~~~~~~~~~l~~iPN~~~~~--v-P~g~ 120 (485)
T 3qne_A 81 EKLSNEKKEIIEKEAEADKNLRSKINQVGNIVHES--V-VDSQ 120 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCTT--S-CCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcc--C-CCCC
Confidence 33444444444444433 34557788888777666 4 6664
No 96
>3teq_A Stromal interaction molecule 1; signaling protein; 1.90A {Homo sapiens}
Probab=31.28 E-value=85 Score=20.89 Aligned_cols=25 Identities=16% Similarity=0.286 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 034685 22 VQKAAKRVQDALLEKQQELERVKEF 46 (87)
Q Consensus 22 ~~~a~~~~~~ai~~~~~el~~~q~~ 46 (87)
+..|...+.+...+.++.+.||++.
T Consensus 66 Il~Ak~aL~evt~~l~Er~~RW~qI 90 (101)
T 3teq_A 66 ILTAKQALSEATAALRERLHRWQQI 90 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777778888999999864
No 97
>1xou_B Z5138 gene product; coiled coil, helix bundle, heterodimer, structural protein/chaperone complex; 2.80A {Escherichia coli} SCOP: a.231.1.2
Probab=30.82 E-value=70 Score=21.06 Aligned_cols=29 Identities=24% Similarity=0.394 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhchhh
Q 034685 35 EKQQELERVKEFISDNTNLINLVQKLPEE 63 (87)
Q Consensus 35 ~~~~el~~~q~~~~Dy~~l~~~L~~LPdk 63 (87)
..+.+|+..++.+.+++.+.++++.|.++
T Consensus 16 kirseie~ikkiiaefdvvke~v~~l~ek 44 (95)
T 1xou_B 16 KIRSEIEAIKKIIAEFDVVKESVNELSEK 44 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34678888999999999999888887665
No 98
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=30.74 E-value=1.1e+02 Score=24.84 Aligned_cols=43 Identities=16% Similarity=0.220 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-HHHHHHHHhhchhhccccccccccc
Q 034685 29 VQDALLEKQQELERVKEFISD-NTNLINLVQKLPEELHHGIMASSFW 74 (87)
Q Consensus 29 ~~~ai~~~~~el~~~q~~~~D-y~~l~~~L~~LPdkLsh~IMV~PfG 74 (87)
+.+.+...+++++.+++-... -+.|.+.+..||.-++-++ |.|
T Consensus 178 l~~eV~pLk~eLk~lE~eL~e~e~eL~~lll~ipN~~~~~v---p~g 221 (536)
T 3err_A 178 MLKRVEPLRNELQKLEDDAKDNQQKLEALLLQVPLPPWPGA---PVG 221 (536)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCTTS---CCS
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCC---CCC
Confidence 334444555555555544443 3456678888998777664 556
No 99
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=30.66 E-value=1.1e+02 Score=24.60 Aligned_cols=39 Identities=13% Similarity=0.078 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHhH-HHHHHHHhhchhhccccccccccc
Q 034685 33 LLEKQQELERVKEFISDN-TNLINLVQKLPEELHHGIMASSFW 74 (87)
Q Consensus 33 i~~~~~el~~~q~~~~Dy-~~l~~~L~~LPdkLsh~IMV~PfG 74 (87)
+.+.+++++.+++-..+. +.+.+.|..||.-++-++ |.|
T Consensus 125 ~~~l~~~i~~l~~~~~~~~~~l~~~l~~iPN~~~~~v---P~g 164 (501)
T 1wle_A 125 GREIRKQLTLLYPKEAQLEEQFYLRALRLPNQTHPDV---PVG 164 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCTTC---CCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC---CCC
Confidence 344444444444444443 356678888998777764 666
No 100
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=30.35 E-value=1.3e+02 Score=20.84 Aligned_cols=33 Identities=12% Similarity=0.170 Sum_probs=14.3
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034685 17 FSVDDVQKAAKRVQDALLEKQQELERVKEFISD 49 (87)
Q Consensus 17 ~~~~~~~~a~~~~~~ai~~~~~el~~~q~~~~D 49 (87)
++.++...+.+.+...+......+.++++..++
T Consensus 115 ~~~~e~~~~~~~l~~~L~~l~~~l~~le~~~~~ 147 (202)
T 2p4w_A 115 KSQEPINVKMRELAEFLHELNERIREIIEEKRE 147 (202)
T ss_dssp SSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455544444444444444444444443333
No 101
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=29.86 E-value=99 Score=18.95 Aligned_cols=38 Identities=32% Similarity=0.409 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHhhchhh
Q 034685 26 AKRVQDALLEKQQELERVKEF----ISDNTNLINLVQKLPEE 63 (87)
Q Consensus 26 ~~~~~~ai~~~~~el~~~q~~----~~Dy~~l~~~L~~LPdk 63 (87)
+.+=++-|.++..++..++.- ..+|+.|...+..|-.+
T Consensus 24 ReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~E 65 (70)
T 1gd2_E 24 RKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEE 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455566666666655432 34555555555555433
No 102
>3sjd_D Golgi to ER traffic protein 2; ATPase, receptor complex, TA-protein biogenesis, GET pathway hydrolase-transport protein complex; HET: ADP; 4.60A {Saccharomyces cerevisiae}
Probab=29.80 E-value=88 Score=18.36 Aligned_cols=24 Identities=4% Similarity=0.149 Sum_probs=13.3
Q ss_pred ccccccCChhHHHHHHHHHHHHHH
Q 034685 11 TSLSSMFSVDDVQKAAKRVQDALL 34 (87)
Q Consensus 11 tpl~~~~~~~~~~~a~~~~~~ai~ 34 (87)
-|.+|-+|..|.+|+.++=+++--
T Consensus 8 ~~~~~~lsa~EkaRLrRERR~aKi 31 (46)
T 3sjd_D 8 HPMGSELTEAEKRRLLRERRQKKF 31 (46)
T ss_dssp -------CHHHHHHHHHHHHHHHH
T ss_pred CCccccccHHHHHHHHHHHHHHHH
Confidence 488899999999988887766653
No 103
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=29.77 E-value=79 Score=19.50 Aligned_cols=20 Identities=10% Similarity=0.087 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHhHHHHHHHH
Q 034685 38 QELERVKEFISDNTNLINLV 57 (87)
Q Consensus 38 ~el~~~q~~~~Dy~~l~~~L 57 (87)
++++.+++-+.+.+.+++.|
T Consensus 82 ~~~~~l~~~i~~l~~~~~~l 101 (109)
T 1r8d_A 82 SQKEILMKKKQRMDEMIQTI 101 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334443343333444433
No 104
>3ls0_A SLL1638 protein, PSBQ; photosynthesis, four helix bundle; 1.80A {Synechocystis SP} PDB: 3ls1_A
Probab=29.66 E-value=49 Score=22.91 Aligned_cols=32 Identities=13% Similarity=0.358 Sum_probs=24.5
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHh
Q 034685 17 FSVDDVQKAAKRVQDALLEKQQELER-VKEFISD 49 (87)
Q Consensus 17 ~~~~~~~~a~~~~~~ai~~~~~el~~-~q~~~~D 49 (87)
.|+++..++.. +.+.|.+.++.+.. |+.++++
T Consensus 17 ysp~~i~~Iq~-y~~~i~~ar~Rl~e~L~~lI~~ 49 (133)
T 3ls0_A 17 YSPEKIAQLQV-YVNPIAVARDGMEKRLQGLIAD 49 (133)
T ss_dssp CCHHHHHHHHH-HHHHHHHHHHHHHHTHHHHHHT
T ss_pred cCHHHHHHHHH-HHHHHHHHHHHhHHHHHHHhhh
Confidence 78888777754 55678888888888 8888764
No 105
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=29.53 E-value=1.2e+02 Score=20.58 Aligned_cols=37 Identities=14% Similarity=0.113 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhh
Q 034685 22 VQKAAKRVQDALLEKQQELERVKEFISDNTNLINLVQK 59 (87)
Q Consensus 22 ~~~a~~~~~~ai~~~~~el~~~q~~~~Dy~~l~~~L~~ 59 (87)
+..+..++++.+.+|.+++...=. ..|++...+.+.+
T Consensus 114 l~~l~~~~~~~~~~~~~~l~~~~~-~~~~~~A~~~~~k 150 (171)
T 1fpo_A 114 LESFIKRVKKMFDTRHQLMVEQLD-NETWDAAADTCRK 150 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-hCcHHHHHHHHHH
Confidence 444445555555555555543332 3366665555543
No 106
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=28.70 E-value=1e+02 Score=18.83 Aligned_cols=36 Identities=14% Similarity=0.183 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhchh
Q 034685 27 KRVQDALLEKQQELERVKEFISDNTNLINLVQKLPE 62 (87)
Q Consensus 27 ~~~~~ai~~~~~el~~~q~~~~Dy~~l~~~L~~LPd 62 (87)
.+++|.=.....++++|+..-+.-+.=|+||..|=.
T Consensus 14 ~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LLk 49 (58)
T 3a2a_A 14 LRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLLR 49 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666667777777777777777777777776643
No 107
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=28.43 E-value=1.1e+02 Score=18.84 Aligned_cols=41 Identities=12% Similarity=0.225 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhc
Q 034685 20 DDVQKAAKRVQDALLEKQQELERVKEFISDNTNLINLVQKL 60 (87)
Q Consensus 20 ~~~~~a~~~~~~ai~~~~~el~~~q~~~~Dy~~l~~~L~~L 60 (87)
.=+.+|.+.+.+--.+.+.-....+....+++.|...|..|
T Consensus 40 ~iL~kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~l 80 (80)
T 1nlw_A 40 SLLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLEKL 80 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34455555444433333333344445556777777777654
No 108
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=28.02 E-value=1e+02 Score=18.49 Aligned_cols=20 Identities=20% Similarity=0.257 Sum_probs=12.8
Q ss_pred HHHHHHHhHHHHHHHHhhch
Q 034685 42 RVKEFISDNTNLINLVQKLP 61 (87)
Q Consensus 42 ~~q~~~~Dy~~l~~~L~~LP 61 (87)
........++.|...|..|.
T Consensus 62 e~~~L~~~~~~L~~~l~~L~ 81 (83)
T 1nkp_B 62 DIDDLKRQNALLEQQVRALG 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 33444567777777777664
No 109
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=27.79 E-value=1.4e+02 Score=24.11 Aligned_cols=38 Identities=8% Similarity=0.109 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHhH-HHHHHHHhhchhhcccccccccccc
Q 034685 35 EKQQELERVKEFISDN-TNLINLVQKLPEELHHGIMASSFWK 75 (87)
Q Consensus 35 ~~~~el~~~q~~~~Dy-~~l~~~L~~LPdkLsh~IMV~PfGk 75 (87)
+.+++++.+++-..+. +.+.+.|..+|.-++-++ |.|+
T Consensus 115 ~l~~~i~~le~~~~~~~~~~~~~l~~iPN~~~~~v---P~g~ 153 (484)
T 3lss_A 115 DLSDQVAGLAKEAQQLEEERDKLMLNVGNILHESV---PIAQ 153 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCTTS---CCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccC---CCCC
Confidence 3444444444433333 356688899998777664 6664
No 110
>1b04_A Protein (DNA ligase); DNA replication; 2.80A {Geobacillus stearothermophilus} SCOP: d.142.2.2
Probab=27.71 E-value=1e+02 Score=23.57 Aligned_cols=33 Identities=12% Similarity=0.097 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHH----------HhHHHHHHHHhhch
Q 034685 29 VQDALLEKQQELERVKEFI----------SDNTNLINLVQKLP 61 (87)
Q Consensus 29 ~~~ai~~~~~el~~~q~~~----------~Dy~~l~~~L~~LP 61 (87)
.++.|.+++++|++|..-. .+|+.|.+.|..|=
T Consensus 6 ~~~~~~~L~~~l~~~~~~YY~~d~p~IsD~eYD~L~~eL~~lE 48 (318)
T 1b04_A 6 AERRAAELRELLNRYGYEYYVLDRPSVPDAEYDRLMQELIAIE 48 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSCCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHH
Confidence 4567889999999999543 57999999988764
No 111
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=27.16 E-value=1.4e+02 Score=20.24 Aligned_cols=38 Identities=13% Similarity=0.051 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhc
Q 034685 22 VQKAAKRVQDALLEKQQELERVKEFISDNTNLINLVQKL 60 (87)
Q Consensus 22 ~~~a~~~~~~ai~~~~~el~~~q~~~~Dy~~l~~~L~~L 60 (87)
+.++..++++.+.+|.++++..-.- .||+...+.+.+|
T Consensus 118 l~~l~~~~~~~~~~~~~~l~~~~~~-~d~~~A~~~~~kL 155 (174)
T 3hho_A 118 LVAFDTKVTAMQRHYLAQLQGQLAQ-SEWLAAADQIRKL 155 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHH
Confidence 6666677777777777777665543 4777776666544
No 112
>3m4w_E Sigma-E factor negative regulatory protein; RSEA, RSEB, RSEP, stress response, sigma factor, periplasm, membrane, transmembrane; 2.30A {Escherichia coli}
Probab=27.05 E-value=39 Score=22.38 Aligned_cols=49 Identities=18% Similarity=0.272 Sum_probs=24.2
Q ss_pred CCCcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhh
Q 034685 5 TAKGTVTSLSSMFSVDDVQKAAKRVQDALLEKQQELERVKEFISDNTNLINLVQK 59 (87)
Q Consensus 5 ~~kgt~tpl~~~~~~~~~~~a~~~~~~ai~~~~~el~~~q~~~~Dy~~l~~~L~~ 59 (87)
+.-|++.|.+ +..+....+..--+ ...+++-.|+..+..||+ |+.||..
T Consensus 20 P~~GsasPVS--l~~ps~~~~~~~~~---~qv~eQrrRInAmLQdye-LQrRl~~ 68 (96)
T 3m4w_E 20 PMMGKASPVS--LGVPSEATANNGQQ---QQVQEQRRRINAMLQDYE-LQRRLHS 68 (96)
T ss_dssp CTTCTTCCCC--CC--------------------CHHHHHHHHHHHH-HHHHHTC
T ss_pred ccCCccccee--ecCCccccccchhH---HHHHHHHHHHHHHHHHHH-HHHHhcc
Confidence 4578999988 55443332211111 234455578889999997 6666643
No 113
>3u0c_A Invasin IPAB, 62 kDa antigen; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.05A {Shigella flexneri} PDB: 3gz1_P
Probab=26.90 E-value=1.9e+02 Score=21.45 Aligned_cols=42 Identities=12% Similarity=0.194 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhchhhcc
Q 034685 24 KAAKRVQDALLEKQQELERVKEFISDNTNLINLVQKLPEELH 65 (87)
Q Consensus 24 ~a~~~~~~ai~~~~~el~~~q~~~~Dy~~l~~~L~~LPdkLs 65 (87)
-+.++.++|-+..++.+..+.....-|.++.+.++++--+|+
T Consensus 100 TaL~eAQ~AtD~y~~Ainny~~Ads~~~~lekKvn~aq~kLs 141 (201)
T 3u0c_A 100 TLLSETEGLTRDYEKQINKLKNADSKIKDLENKINQIQTRLS 141 (201)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444445555555555556666666666555554
No 114
>3zsu_A TLL2057 protein, cyanoq; photosystem II assembly, photosynthesis, extrinsic protein; 1.60A {Thermosynechococcus elongatus}
Probab=26.82 E-value=37 Score=23.41 Aligned_cols=32 Identities=3% Similarity=0.136 Sum_probs=25.6
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034685 17 FSVDDVQKAAKRVQDALLEKQQELERVKEFISD 49 (87)
Q Consensus 17 ~~~~~~~~a~~~~~~ai~~~~~el~~~q~~~~D 49 (87)
.|+++..++.. +.+.|.+.++.+..|+.++++
T Consensus 15 ysp~~i~~iq~-y~~~i~~~r~Rl~eL~~lI~~ 46 (130)
T 3zsu_A 15 YSELQITRIQD-YLRDIEKNAERFADLEVSVAK 46 (130)
T ss_dssp CCHHHHHHHHH-HHHHHHHHHTTHHHHHHHHHT
T ss_pred cCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhh
Confidence 88888887764 556788888999999998875
No 115
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=26.67 E-value=1.8e+02 Score=22.47 Aligned_cols=52 Identities=10% Similarity=0.210 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH----HHHHHhhchhhcccccccccc
Q 034685 22 VQKAAKRVQDALLEKQQELERVKEFISDNTN----LINLVQKLPEELHHGIMASSF 73 (87)
Q Consensus 22 ~~~a~~~~~~ai~~~~~el~~~q~~~~Dy~~----l~~~L~~LPdkLsh~IMV~Pf 73 (87)
+++-..++++.|.+.+.+++++++-..+-+. |.+.++.|-.++.+=+=|-|+
T Consensus 15 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnIrV~vRvRP~ 70 (403)
T 4etp_A 15 LKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNIRVYLRIRPA 70 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSEEEEEEECCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 3444445555555555555555554444444 334444444433333333454
No 116
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=26.61 E-value=1.3e+02 Score=19.39 Aligned_cols=32 Identities=19% Similarity=0.311 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhc
Q 034685 29 VQDALLEKQQELERVKEFISDNTNLINLVQKL 60 (87)
Q Consensus 29 ~~~ai~~~~~el~~~q~~~~Dy~~l~~~L~~L 60 (87)
+.+.|+.++++|.+++.--.....|++-.+-|
T Consensus 43 Lh~~ie~~~eEi~~Lk~en~~L~elA~~~q~l 74 (83)
T 1wlq_A 43 LHKEIEQKDSEIARLRKENKDLAEVAEHVQYM 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444433333
No 117
>2olt_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 2.00A {Shewanella oneidensis} PDB: 2iiu_A*
Probab=26.51 E-value=72 Score=21.78 Aligned_cols=27 Identities=19% Similarity=0.217 Sum_probs=17.4
Q ss_pred HHHHHhhchhhccccccccccccccccc
Q 034685 53 LINLVQKLPEELHHGIMASSFWKSSIFS 80 (87)
Q Consensus 53 l~~~L~~LPdkLsh~IMV~PfGk~AfmP 80 (87)
-+..+..=-|++.|+|+- =+-+..|.|
T Consensus 54 ~i~~~E~~aD~l~~~I~~-~L~~~~~~P 80 (227)
T 2olt_A 54 QISLAEKQGDSLKREIRL-TLPSGLFMP 80 (227)
T ss_dssp HHHHHHHHHHHHHHHHHH-HGGGCCSCS
T ss_pred HHHHHHHHHHHHHHHHHH-HhhccccCC
Confidence 345556677888888876 555555554
No 118
>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_B
Probab=26.24 E-value=1e+02 Score=17.92 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=9.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 034685 20 DDVQKAAKRVQDALLEKQQELER 42 (87)
Q Consensus 20 ~~~~~a~~~~~~ai~~~~~el~~ 42 (87)
++++.++.++.....+.+..+.+
T Consensus 8 ~~l~~~a~~~~~~~~~i~~~l~~ 30 (94)
T 3fav_B 8 AGIEAAASAIQGNVTSIHSLLDE 30 (94)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433
No 119
>3e1r_A Centrosomal protein of 55 kDa; CEP55, ALIX, cytokinesis, ESCRT, alternative splicing, cell cycle, cell division, coiled coil, mitosis; 2.00A {Homo sapiens}
Probab=26.22 E-value=1.2e+02 Score=18.59 Aligned_cols=46 Identities=20% Similarity=0.218 Sum_probs=29.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhchhh
Q 034685 18 SVDDVQKAAKRVQDALLEKQQELERVKEFISDNTNLINLVQKLPEE 63 (87)
Q Consensus 18 ~~~~~~~a~~~~~~ai~~~~~el~~~q~~~~Dy~~l~~~L~~LPdk 63 (87)
|+.+...+-..+++|++.+|+=+-=-|+.+.--..|..++-+|-.+
T Consensus 4 ~~~~i~~ve~qLkDaleknqqWlvydqqReayV~gll~~i~eleq~ 49 (58)
T 3e1r_A 4 SINNIHEMEIQLKDALEKNQQWLVYDQQREVYVKGLLAKIFELEKK 49 (58)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 5668888899999999999876554444444445555555555444
No 120
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=26.14 E-value=1.2e+02 Score=20.81 Aligned_cols=10 Identities=0% Similarity=-0.117 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 034685 37 QQELERVKEF 46 (87)
Q Consensus 37 ~~el~~~q~~ 46 (87)
++.++.++..
T Consensus 99 ~~~~~~l~~~ 108 (278)
T 1r8e_A 99 SALEQTISLV 108 (278)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 121
>1h7c_A Tubulin-specific chaperone A; protein folding, cofactor A; 1.8A {Homo sapiens} SCOP: a.7.5.1
Probab=26.04 E-value=1.4e+02 Score=19.42 Aligned_cols=44 Identities=16% Similarity=0.163 Sum_probs=26.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------HHHHHHHHhhchh
Q 034685 19 VDDVQKAAKRVQDALLEKQQELERVKEFISD----------NTNLINLVQKLPE 62 (87)
Q Consensus 19 ~~~~~~a~~~~~~ai~~~~~el~~~q~~~~D----------y~~l~~~L~~LPd 62 (87)
..-+.|+.++..=--.+.+++.++++++++| -+.|.++-..+||
T Consensus 13 t~~vkRL~KE~~~Y~kE~~~q~~riek~k~e~~Dey~iKkq~evl~Et~~mipd 66 (108)
T 1h7c_A 13 TGVVRRLVKERVMYEKEAKQQEEKIEKMRAEDGENYDIKKQAEILQESRMMIPD 66 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCTHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhH
Confidence 3456666666555555666666666666664 2345566666665
No 122
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=25.96 E-value=1.9e+02 Score=21.06 Aligned_cols=72 Identities=15% Similarity=0.049 Sum_probs=40.5
Q ss_pred cccccCChhHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHhHHHHHHHHhhchhhcccccccccc-cc-
Q 034685 12 SLSSMFSVDDVQKAAKRVQDALLEKQQELERVKE--------------FISDNTNLINLVQKLPEELHHGIMASSF-WK- 75 (87)
Q Consensus 12 pl~~~~~~~~~~~a~~~~~~ai~~~~~el~~~q~--------------~~~Dy~~l~~~L~~LPdkLsh~IMV~Pf-Gk- 75 (87)
+|+.+=+ .+.+......+..+...+.+++|.+. ...+|+.....|...=.+|++-...+|| |.
T Consensus 70 ~L~~ld~-~~~~~~l~~a~a~l~~a~~~~~R~~~L~~~g~is~~~~~~a~~~~~~a~a~l~~a~~~l~~~~I~AP~~G~V 148 (369)
T 1vf7_A 70 QLYQIDP-ATYEADYQSAQANLASTQEQAQRYKLLVADQAVSKQQYADANAAYLQSKAAVEQARINLRYTKVLSPISGRI 148 (369)
T ss_dssp EEEEECC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTEEECSSSEEE
T ss_pred EEEEECc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEECCCCeEE
Confidence 4555443 34444444444445554555554443 3445666666777777788887777798 43
Q ss_pred --ccccccccc
Q 034685 76 --SSIFSWAFD 84 (87)
Q Consensus 76 --~AfmPG~Lv 84 (87)
.-.-+|..|
T Consensus 149 ~~~~v~~G~~V 159 (369)
T 1vf7_A 149 GRSAVTEGALV 159 (369)
T ss_dssp CCCSSCBTCEE
T ss_pred EEEEcCCCCeE
Confidence 234555544
No 123
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=25.83 E-value=1.7e+02 Score=20.35 Aligned_cols=48 Identities=21% Similarity=0.333 Sum_probs=34.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhchhhcc
Q 034685 18 SVDDVQKAAKRVQDALLEKQQELERVKEFISDNTNLINLVQKLPEELH 65 (87)
Q Consensus 18 ~~~~~~~a~~~~~~ai~~~~~el~~~q~~~~Dy~~l~~~L~~LPdkLs 65 (87)
.|+|.+.|-+-++.-+.+-+...++..+..+|-+.+.+++.-|-+=|+
T Consensus 30 ~PeDL~~AN~LiK~m~~~d~~r~e~~~k~~seLe~V~~nv~LL~EML~ 77 (158)
T 1naf_A 30 HPEDLRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVM 77 (158)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888887777777766667777777777888888777666655444
No 124
>1ta8_A DNA ligase, NAD-dependent; nucleotidyl transferase fold; HET: DNA NMN; 1.80A {Enterococcus faecalis} SCOP: d.142.2.2 PDB: 3ba8_A* 1tae_A* 3ba9_A* 3baa_A* 3bab_A*
Probab=25.79 E-value=1.3e+02 Score=23.29 Aligned_cols=32 Identities=9% Similarity=0.035 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHH----------HhHHHHHHHHhhc
Q 034685 29 VQDALLEKQQELERVKEFI----------SDNTNLINLVQKL 60 (87)
Q Consensus 29 ~~~ai~~~~~el~~~q~~~----------~Dy~~l~~~L~~L 60 (87)
.++.|.+++++|++|..-. .+|+.|.+.|..|
T Consensus 11 ~~~~i~~L~~~l~~~~~~YY~~d~p~IsD~eYD~L~~eL~~l 52 (332)
T 1ta8_A 11 ATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDI 52 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSCCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHH
Confidence 3467888999999999542 5799999999887
No 125
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=25.48 E-value=1.5e+02 Score=19.71 Aligned_cols=19 Identities=11% Similarity=0.029 Sum_probs=7.8
Q ss_pred HHHHHHHhHHHHHHHHhhc
Q 034685 42 RVKEFISDNTNLINLVQKL 60 (87)
Q Consensus 42 ~~q~~~~Dy~~l~~~L~~L 60 (87)
.++.-+.+.+.+.+.|..+
T Consensus 101 ~l~~qi~~L~~~~~~L~~~ 119 (154)
T 2zhg_A 101 ELDRRIHTLVALRDELDGC 119 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444433
No 126
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=25.43 E-value=1.1e+02 Score=19.65 Aligned_cols=10 Identities=20% Similarity=0.345 Sum_probs=4.4
Q ss_pred HHHHHHhhch
Q 034685 52 NLINLVQKLP 61 (87)
Q Consensus 52 ~l~~~L~~LP 61 (87)
.-+++|+..|
T Consensus 28 eel~~L~~~P 37 (109)
T 2wg5_A 28 NEVARLRSPP 37 (109)
T ss_dssp HHHHHHHSCC
T ss_pred HHHHHHhCCC
Confidence 3344444444
No 127
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=25.33 E-value=67 Score=19.87 Aligned_cols=10 Identities=30% Similarity=0.567 Sum_probs=4.9
Q ss_pred CChhHHHHHH
Q 034685 17 FSVDDVQKAA 26 (87)
Q Consensus 17 ~~~~~~~~a~ 26 (87)
||.+++..+.
T Consensus 59 ~sl~~I~~~l 68 (108)
T 2vz4_A 59 FPLDEVAALL 68 (108)
T ss_dssp CCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 4555554443
No 128
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=25.24 E-value=1.1e+02 Score=17.99 Aligned_cols=33 Identities=15% Similarity=0.251 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhc
Q 034685 28 RVQDALLEKQQELERVKEFISDNTNLINLVQKL 60 (87)
Q Consensus 28 ~~~~ai~~~~~el~~~q~~~~Dy~~l~~~L~~L 60 (87)
++++.-.....++.+++..-++-+.=|+||++|
T Consensus 8 kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~L 40 (48)
T 3vmx_A 8 RLKQINIQLATKIQHLEFSCSEKEQEIERLNKL 40 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 444555555555556655555555555666555
No 129
>1z23_A CRK-associated substrate; four-helix bundle, cell adhesion; NMR {Rattus norvegicus}
Probab=25.24 E-value=1.9e+02 Score=20.58 Aligned_cols=43 Identities=23% Similarity=0.275 Sum_probs=34.2
Q ss_pred ChhHHHHHHHHHHHHHHHH-------------------HHHH-HHHHHHHHhHHHHHHHHhhc
Q 034685 18 SVDDVQKAAKRVQDALLEK-------------------QQEL-ERVKEFISDNTNLINLVQKL 60 (87)
Q Consensus 18 ~~~~~~~a~~~~~~ai~~~-------------------~~el-~~~q~~~~Dy~~l~~~L~~L 60 (87)
...+++.|+.+++.++.+. +.++ .+++...+.|.-|.+.-+.|
T Consensus 53 ~i~~i~~a~~~v~~Sl~efL~Farga~~nA~~~~d~~L~~kl~r~Lq~l~ds~qiL~~~~~~L 115 (163)
T 1z23_A 53 PVQDLKAAVAAVHGAVHELLEFARSAVSSATHTSDRTLHAKLSRQLQKMEDVYQTLVVHGQVL 115 (163)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3568999999999998654 3666 77888999999999986655
No 130
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=25.21 E-value=1.9e+02 Score=20.73 Aligned_cols=42 Identities=12% Similarity=0.053 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhchhhcc
Q 034685 24 KAAKRVQDALLEKQQELERVKEFISDNTNLINLVQKLPEELH 65 (87)
Q Consensus 24 ~a~~~~~~ai~~~~~el~~~q~~~~Dy~~l~~~L~~LPdkLs 65 (87)
-+.++.+++-+.....+..+....+-|+++.+.|+++--+|+
T Consensus 52 tal~eAq~Atd~ye~ai~n~~sA~~~~d~lekKl~~aq~kL~ 93 (158)
T 3tul_A 52 TALGEAQEATDLYEASIKKTDTAKSVYDAATKKLTQAQNKLQ 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444455555555666666666666655554
No 131
>2fyz_A Fusion protein, fusion glycoprotein F0; mumps virus fusion protein core, protein binding; 2.20A {Mumps virus} SCOP: h.3.2.1
Probab=24.93 E-value=1.2e+02 Score=18.41 Aligned_cols=11 Identities=0% Similarity=0.181 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 034685 26 AKRVQDALLEK 36 (87)
Q Consensus 26 ~~~~~~ai~~~ 36 (87)
..+++++|...
T Consensus 19 I~~LK~Si~~T 29 (63)
T 2fyz_A 19 IAAMKNSIQAT 29 (63)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444444333
No 132
>1svf_A Protein (fusion glycoprotein); paramyxovirus, SV5, coiled-coil, viral protein; 1.40A {Simian virus 5} SCOP: h.3.2.1
Probab=24.81 E-value=1.2e+02 Score=18.43 Aligned_cols=29 Identities=17% Similarity=0.206 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034685 21 DVQKAAKRVQDALLEKQQELERVKEFISD 49 (87)
Q Consensus 21 ~~~~a~~~~~~ai~~~~~el~~~q~~~~D 49 (87)
..-+|..++.+.+....--++.+|.|+++
T Consensus 25 ~TNeAV~el~~g~~~lavAv~~lQd~IN~ 53 (64)
T 1svf_A 25 KTNAAVADVVQATQSLGTAVQAVQDHINS 53 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555666666666654
No 133
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=24.57 E-value=1.4e+02 Score=18.98 Aligned_cols=12 Identities=25% Similarity=0.327 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHH
Q 034685 22 VQKAAKRVQDAL 33 (87)
Q Consensus 22 ~~~a~~~~~~ai 33 (87)
|..++.+-+.|+
T Consensus 18 Wk~lAE~RR~AL 29 (79)
T 2zxx_A 18 WKEVAEQRRKAL 29 (79)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444444
No 134
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=24.56 E-value=1.1e+02 Score=17.88 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=15.9
Q ss_pred HHHHHHHHhHHHHHHHHhhchhhc
Q 034685 41 ERVKEFISDNTNLINLVQKLPEEL 64 (87)
Q Consensus 41 ~~~q~~~~Dy~~l~~~L~~LPdkL 64 (87)
.+.+....+|..|...+..|-..+
T Consensus 30 ~~~~~L~~~N~~L~~~i~~L~~E~ 53 (63)
T 1ci6_A 30 GECKELEKKNEALKERADSLAKEI 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566677777777777765543
No 135
>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} SCOP: d.26.1.0
Probab=24.45 E-value=28 Score=25.24 Aligned_cols=67 Identities=7% Similarity=0.070 Sum_probs=27.5
Q ss_pred cCChhHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHhHHHHHHHHhhchhhccccccccc-ccccccccccccc
Q 034685 16 MFSVDDVQKAAKRVQDALLEKQQ---------ELERVKEFISDNTNLINLVQKLPEELHHGIMASS-FWKSSIFSWAFDT 85 (87)
Q Consensus 16 ~~~~~~~~~a~~~~~~ai~~~~~---------el~~~q~~~~Dy~~l~~~L~~LPdkLsh~IMV~P-fGk~AfmPG~Lv~ 85 (87)
.++.++.+.+...+++.+...++ ..+.=++|..+|.. .+-+.++|.-|.|.|.. + =|+ ..-+|..|+
T Consensus 63 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~n~~-~~gv~~~~sGl~y~vl~-~G~G~-~p~~gd~V~ 139 (219)
T 3oe2_A 63 ALKQERIDQILREHDAAIAQAETAGTDAPTEAALKAERTFMAGEKA-KPGVKELADGILMTELT-PGTGP-KPDANGRVE 139 (219)
T ss_dssp ------------------------CCCCCHHHHHHHHHHHHHHHHT-STTCEECGGGCEEEEEE-CCCSC-CCCTTSEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCcEECCCCeEEEEEe-cCCCc-cCCCCCEEE
Confidence 47788888888888777765532 23444666666654 44577899999999998 4 233 234555544
No 136
>4err_A Autotransporter adhesin; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.55A {Vibrio vulnificus}
Probab=24.28 E-value=1.5e+02 Score=19.32 Aligned_cols=20 Identities=20% Similarity=0.494 Sum_probs=13.9
Q ss_pred cccCChhHHHHHHHHHHHHH
Q 034685 14 SSMFSVDDVQKAAKRVQDAL 33 (87)
Q Consensus 14 ~~~~~~~~~~~a~~~~~~ai 33 (87)
+.++++.|..+++.-..+.+
T Consensus 2 ~~l~t~~EL~~aA~V~gK~~ 21 (90)
T 4err_A 2 GQIFTVQELKERAKVFAKPI 21 (90)
T ss_dssp CCSCCHHHHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHhhc
Confidence 56788888888866555544
No 137
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=24.24 E-value=96 Score=22.53 Aligned_cols=27 Identities=30% Similarity=0.500 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034685 20 DDVQKAAKRVQDALLEKQQELERVKEF 46 (87)
Q Consensus 20 ~~~~~a~~~~~~ai~~~~~el~~~q~~ 46 (87)
+++..+.++++..+.+++.++++|...
T Consensus 291 ~~lP~l~~~i~~~~~~~~~~l~~~~~~ 317 (353)
T 2x2e_A 291 DTLPGLRNKLQSQLLSIEKEVEEYKNF 317 (353)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 344555566666666777777777655
No 138
>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A
Probab=24.07 E-value=1.1e+02 Score=23.85 Aligned_cols=25 Identities=20% Similarity=0.306 Sum_probs=19.6
Q ss_pred cccccccCChhHHHHHHHHHHHHHHHH
Q 034685 10 VTSLSSMFSVDDVQKAAKRVQDALLEK 36 (87)
Q Consensus 10 ~tpl~~~~~~~~~~~a~~~~~~ai~~~ 36 (87)
+|.++ |..+|..++++.+.+++...
T Consensus 417 ~t~~g--~~~~d~~~~~~~i~~~l~~~ 441 (490)
T 2a7v_A 417 LTSRQ--FREDDFRRVVDFIDEGVNIG 441 (490)
T ss_dssp HHHTT--CCHHHHHHHHHHHHHHHHHH
T ss_pred cccCC--CCHHHHHHHHHHHHHHHHhh
Confidence 44444 88999999999999888654
No 139
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural genomics, the center for structural genomics of I diseases, csgid; 1.87A {Listeria monocytogenes}
Probab=24.04 E-value=98 Score=22.29 Aligned_cols=52 Identities=10% Similarity=0.058 Sum_probs=21.0
Q ss_pred CChhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHhhchhhccccc
Q 034685 17 FSVDDVQKAAKRVQ-DALLEKQQELERVKEFISDNTNLINLVQKLPEELHHGI 68 (87)
Q Consensus 17 ~~~~~~~~a~~~~~-~ai~~~~~el~~~q~~~~Dy~~l~~~L~~LPdkLsh~I 68 (87)
||.+++.++.+.-. +.....+.+++.++.-+..-+.+++.|+..=+.+..++
T Consensus 61 ~sL~eIk~~l~~~~~~~~~~L~~~~~~L~~~~~~L~~~~~~l~~~i~~~~~~~ 113 (249)
T 3qao_A 61 FPLKKIQQILDDPLFDKNVALDMQRHLLIEKKQRIETMLATLDLTIKNEKGEI 113 (249)
T ss_dssp CCHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred CCHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 55555554443211 12223333444444444444444444444433333333
No 140
>3kdq_A Uncharacterized conserved protein; functionally unknown protein,corynebacterium diphtheriae, structural genomics, PSI-2; 3.00A {Corynebacterium diphtheriae}
Probab=24.00 E-value=1.3e+02 Score=20.77 Aligned_cols=33 Identities=9% Similarity=0.244 Sum_probs=28.2
Q ss_pred cccccCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 034685 12 SLSSMFSVDDVQKAAKRVQDALLEKQQELERVK 44 (87)
Q Consensus 12 pl~~~~~~~~~~~a~~~~~~ai~~~~~el~~~q 44 (87)
-..+.+++++.++-++.+...+.+....|++.+
T Consensus 116 k~vs~vdv~~~qk~ad~l~k~~r~Ld~~IQ~~N 148 (154)
T 3kdq_A 116 KYVATMDAREIRKKADLAAKEYRQLDVDIQRLN 148 (154)
T ss_dssp CEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hheeccCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456789999999999999999999888888754
No 141
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X*
Probab=23.91 E-value=43 Score=26.24 Aligned_cols=31 Identities=16% Similarity=0.186 Sum_probs=22.4
Q ss_pred CCcccccccccCChhH-----------HHHHHHHHHHHHHHH
Q 034685 6 AKGTVTSLSSMFSVDD-----------VQKAAKRVQDALLEK 36 (87)
Q Consensus 6 ~kgt~tpl~~~~~~~~-----------~~~a~~~~~~ai~~~ 36 (87)
-||.++|++.++|..- ..++++++++||.+.
T Consensus 292 Gk~iANP~A~IlS~ammL~~lg~~~~~~~~~A~~Ie~Av~~~ 333 (364)
T 3flk_A 292 GKNIANPIAMIWSGALMLEFLGQGDERYQRAHDDMLNAIERV 333 (364)
T ss_dssp TSSCCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCccCcHHHHHHHHHHHHHhCcccchhHHHHHHHHHHHHHH
Confidence 4788999999998753 445666777776654
No 142
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=23.91 E-value=2e+02 Score=20.47 Aligned_cols=47 Identities=21% Similarity=0.341 Sum_probs=31.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhchhhcc
Q 034685 19 VDDVQKAAKRVQDALLEKQQELERVKEFISDNTNLINLVQKLPEELH 65 (87)
Q Consensus 19 ~~~~~~a~~~~~~ai~~~~~el~~~q~~~~Dy~~l~~~L~~LPdkLs 65 (87)
++|++.|-+-++.-+.+-+...++..+..++-+.+.+++.-|-+=|+
T Consensus 47 PeDL~~AN~LiK~m~~~d~~r~e~~~k~~~eLe~V~~nv~LL~EML~ 93 (186)
T 1oxz_A 47 PEDLRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVM 93 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777666655566666777777777777776666655444
No 143
>3cr3_A PTS-dependent dihydroxyacetone kinase, ADP- binding subunit DHAL; transient protein-protein complex transferase complex PTS- dependent dihydroxyacetone kinase; HET: ADP; 2.10A {Lactococcus lactis subsp} SCOP: a.208.1.1
Probab=23.87 E-value=1.7e+02 Score=20.51 Aligned_cols=46 Identities=9% Similarity=0.172 Sum_probs=34.4
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HhHHHHHHHHhhch
Q 034685 16 MFSVDDVQKAAKRVQDALLEKQQELERVKEFI----------SDNTNLINLVQKLP 61 (87)
Q Consensus 16 ~~~~~~~~~a~~~~~~ai~~~~~el~~~q~~~----------~Dy~~l~~~L~~LP 61 (87)
+++.+++.++....-+.|.+++++|.+|..-+ .=.+++.+.|..+|
T Consensus 1 ~~~~~~~~~~l~~~~~~l~~~~~~L~~LD~~vGDGD~G~nm~~g~~a~~~~l~~~~ 56 (192)
T 3cr3_A 1 LLTIDTTIEWLGKFNEKIQENKAYLSELDGPIGDGDHGANMARGMSETMKALEVSN 56 (192)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTHHHHHHHTTTTSCSCHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHHHHHhHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHhcCC
Confidence 46677889999999999999999999998733 33555555565543
No 144
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=23.77 E-value=94 Score=21.97 Aligned_cols=26 Identities=12% Similarity=0.362 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhHHHHHHHHhhchhhc
Q 034685 39 ELERVKEFISDNTNLINLVQKLPEEL 64 (87)
Q Consensus 39 el~~~q~~~~Dy~~l~~~L~~LPdkL 64 (87)
+|.++---..+++..+..|+.+|-+.
T Consensus 127 kia~C~~~l~~~~~Ai~~Le~Ip~k~ 152 (167)
T 3ffl_A 127 KLAECYTVLKQDKDAIAILDGIPSRQ 152 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCGGG
T ss_pred HHHHHHHHHCCHHHHHHHHhcCCchh
Confidence 33344444455668888899998764
No 145
>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae}
Probab=23.68 E-value=2.1e+02 Score=21.29 Aligned_cols=39 Identities=15% Similarity=0.171 Sum_probs=35.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 034685 18 SVDDVQKAAKRVQDALLEKQQELERVKEFISDNTNLINL 56 (87)
Q Consensus 18 ~~~~~~~a~~~~~~ai~~~~~el~~~q~~~~Dy~~l~~~ 56 (87)
..+|+.-+-..|-+.+++..++++.+.+.++|-+.+++.
T Consensus 214 d~eElEmLLE~Y~~q~d~~~~~~~~L~~~I~~TEe~i~i 252 (261)
T 3rkg_A 214 NFSDLEMLIETYYTQCDEYVQQSESLIQDIKSTEEIVNI 252 (261)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888999999999999999999999999999875
No 146
>1ygt_A Cytoplasmic dynein light chain; domain swapping, protein transport; 1.70A {Drosophila melanogaster} PDB: 2pg1_E 3fm7_A
Probab=23.51 E-value=1.2e+02 Score=19.16 Aligned_cols=52 Identities=19% Similarity=0.295 Sum_probs=32.1
Q ss_pred ccCChhHHHHHHHHHHHHHHH-H---HHHHHHHHHHHHhHHHHHHHHhhchhhccccccc
Q 034685 15 SMFSVDDVQKAAKRVQDALLE-K---QQELERVKEFISDNTNLINLVQKLPEELHHGIMA 70 (87)
Q Consensus 15 ~~~~~~~~~~a~~~~~~ai~~-~---~~el~~~q~~~~Dy~~l~~~L~~LPdkLsh~IMV 70 (87)
.-|++++++.+.+++-+...+ . .++..+|-.-+.| .+.++|..|.. .|++.|
T Consensus 8 ~~F~~~~v~~ii~~~l~~~L~~~~Y~~~~~~~~~~~i~~--~i~~~lk~l~~--~YK~iV 63 (111)
T 1ygt_A 8 SQFIVDDVSKTIKEAIETTIGGNAYQHDKVNNWTGQVVE--NCLTVLTKEQK--PYKYIV 63 (111)
T ss_dssp CCCCCCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH--HHHHHHHTTCC--SEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHH--HHHHHHHhhCC--CceEEE
Confidence 458899998887765443321 1 2445566655554 56777777764 466555
No 147
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=23.49 E-value=1.4e+02 Score=18.41 Aligned_cols=31 Identities=19% Similarity=0.230 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 034685 27 KRVQDALLEKQQELERVKEFISDNTNLINLV 57 (87)
Q Consensus 27 ~~~~~ai~~~~~el~~~q~~~~Dy~~l~~~L 57 (87)
..++..+.+.++++..++.-+.+++..++.+
T Consensus 13 ~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l 43 (112)
T 1l8d_A 13 TTIEEERNEITQRIGELKNKIGDLKTAIEEL 43 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444444444444444444444
No 148
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}
Probab=23.18 E-value=1.9e+02 Score=20.10 Aligned_cols=19 Identities=0% Similarity=0.146 Sum_probs=16.2
Q ss_pred ChhHHHHHHHHHHHHHHHH
Q 034685 18 SVDDVQKAAKRVQDALLEK 36 (87)
Q Consensus 18 ~~~~~~~a~~~~~~ai~~~ 36 (87)
+.+|+.++.+.+.+++.++
T Consensus 379 ~~e~i~~~~~~l~~~l~~~ 397 (425)
T 3ecd_A 379 GAAEFREVGRLILEVFEAL 397 (425)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcc
Confidence 4789999999999988876
No 149
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=22.92 E-value=1.2e+02 Score=17.64 Aligned_cols=18 Identities=28% Similarity=0.394 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 034685 30 QDALLEKQQELERVKEFI 47 (87)
Q Consensus 30 ~~ai~~~~~el~~~q~~~ 47 (87)
.+++.+.+++|..+++-.
T Consensus 29 ~~~L~~AR~el~~Lkeel 46 (51)
T 3m91_A 29 METLKEARQQLLALREEV 46 (51)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455556666666555443
No 150
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=22.82 E-value=1.5e+02 Score=18.74 Aligned_cols=38 Identities=24% Similarity=0.327 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHhhchhh
Q 034685 26 AKRVQDALLEKQQELERVK----EFISDNTNLINLVQKLPEE 63 (87)
Q Consensus 26 ~~~~~~ai~~~~~el~~~q----~~~~Dy~~l~~~L~~LPdk 63 (87)
...+...|...+.+.+++. .|-.+|+++...+..+-|.
T Consensus 34 ~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE 75 (96)
T 3q8t_A 34 RKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDE 75 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555553 3556677776666665554
No 151
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=22.78 E-value=1.2e+02 Score=17.67 Aligned_cols=24 Identities=17% Similarity=0.177 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 034685 20 DDVQKAAKRVQDALLEKQQELERV 43 (87)
Q Consensus 20 ~~~~~a~~~~~~ai~~~~~el~~~ 43 (87)
.++...+..+++.+...+..+..+
T Consensus 18 ~~~~~~~~~i~~~l~~L~~~~~~l 41 (98)
T 3gwk_C 18 QKYTAGSQQVTEVLNLLTQEQAVI 41 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777776654
No 152
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=22.55 E-value=1.2e+02 Score=19.08 Aligned_cols=42 Identities=21% Similarity=0.175 Sum_probs=28.2
Q ss_pred CChhHHHHHHHHH-HHHHHHHHHHHHHHHHHH---HhHHHHHHHHh
Q 034685 17 FSVDDVQKAAKRV-QDALLEKQQELERVKEFI---SDNTNLINLVQ 58 (87)
Q Consensus 17 ~~~~~~~~a~~~~-~~ai~~~~~el~~~q~~~---~Dy~~l~~~L~ 58 (87)
|+..++..+.... ...-+.|.+-|..|..-. .-.++|++.|.
T Consensus 41 ~s~~~I~~I~~~~p~~~~eq~~~mL~~W~~~~g~~AT~~~L~~aL~ 86 (111)
T 2yqf_A 41 FSVEDINRIRVENPNSLLEQSVALLNLWVIREGQNANMENLYTALQ 86 (111)
T ss_dssp CCHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHTTSCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhCCCchHHHHHHHHH
Confidence 6667777776666 445577888899998775 34555555554
No 153
>3uq8_A DNA ligase; adenylated protein, ATP-grAsp, rossman fold, adenylation; HET: DNA NAD AMP; 1.70A {Haemophilus influenzae} PDB: 3pn1_A* 3bac_A*
Probab=22.49 E-value=1.7e+02 Score=22.52 Aligned_cols=31 Identities=19% Similarity=0.198 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHH----------HhHHHHHHHHhhc
Q 034685 30 QDALLEKQQELERVKEFI----------SDNTNLINLVQKL 60 (87)
Q Consensus 30 ~~ai~~~~~el~~~q~~~----------~Dy~~l~~~L~~L 60 (87)
++.|.+++++|.+|..-. .+|+.|.+.|..|
T Consensus 3 ~~~i~~L~~~l~~~~~~YY~~d~p~IsD~eYD~L~~eL~~l 43 (322)
T 3uq8_A 3 QTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKAL 43 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSCCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHH
Confidence 567888999999998642 4799999998887
No 154
>1ezj_A Nucleocapsid phosphoprotein; four stranded coiled coil, viral polymerase, T viral protein, transferase; 1.90A {Sendai virus} SCOP: h.1.14.1
Probab=22.44 E-value=1.6e+02 Score=20.00 Aligned_cols=39 Identities=18% Similarity=0.247 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhchhh
Q 034685 25 AAKRVQDALLEKQQELERVKEFISDNTNLINLVQKLPEE 63 (87)
Q Consensus 25 a~~~~~~ai~~~~~el~~~q~~~~Dy~~l~~~L~~LPdk 63 (87)
+.+-.+.++++++..+.+.|.-++....+.+|+.+-.++
T Consensus 60 v~~~~~~kv~en~~~L~QIQ~ei~s~rd~hkR~~E~QkE 98 (115)
T 1ezj_A 60 AEKSSARKVDENKQLLKQIQESVESFRDIYKRFSEYQKE 98 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 445566777888888888877777776666666554443
No 155
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=22.29 E-value=1.7e+02 Score=19.14 Aligned_cols=9 Identities=11% Similarity=0.294 Sum_probs=3.7
Q ss_pred CChhHHHHH
Q 034685 17 FSVDDVQKA 25 (87)
Q Consensus 17 ~~~~~~~~a 25 (87)
||.+++.+.
T Consensus 60 ~sL~eIk~~ 68 (142)
T 3gp4_A 60 LSIEALIDY 68 (142)
T ss_dssp CCHHHHHHH
T ss_pred CCHHHHHHH
Confidence 444444433
No 156
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=22.19 E-value=98 Score=16.31 Aligned_cols=19 Identities=11% Similarity=0.284 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 034685 26 AKRVQDALLEKQQELERVK 44 (87)
Q Consensus 26 ~~~~~~ai~~~~~el~~~q 44 (87)
-+.++|+|.-.+++|..++
T Consensus 9 ndaleqkiaalkqkiaslk 27 (28)
T 3ra3_A 9 NDALEQKIAALKQKIASLK 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhc
Confidence 3567788888888777764
No 157
>2l3l_A Tubulin-specific chaperone C; tubulin binding cofactor; NMR {Homo sapiens}
Probab=22.17 E-value=87 Score=20.52 Aligned_cols=20 Identities=25% Similarity=0.438 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 034685 30 QDALLEKQQELERVKEFISD 49 (87)
Q Consensus 30 ~~ai~~~~~el~~~q~~~~D 49 (87)
.++++++...|.+|+++.+|
T Consensus 57 ~~~ld~i~~~I~~Lqk~v~d 76 (111)
T 2l3l_A 57 VERLEEAASRLQGLQKLIND 76 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 56788889999999999886
No 158
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=22.10 E-value=67 Score=20.10 Aligned_cols=11 Identities=36% Similarity=0.440 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 034685 30 QDALLEKQQEL 40 (87)
Q Consensus 30 ~~ai~~~~~el 40 (87)
++.|.+.++.+
T Consensus 20 e~~v~~le~~L 30 (72)
T 3cve_A 20 EGQLSEMEQRL 30 (72)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 159
>2xz3_A Maltose ABC transporter periplasmic protein, ENVE glycoprotein; viral protein, viral membrane fusion, hairpin, chimera; HET: MAL; 1.95A {Escherichia coli} PDB: 1mg1_A*
Probab=22.10 E-value=2.5e+02 Score=20.94 Aligned_cols=18 Identities=17% Similarity=0.202 Sum_probs=8.5
Q ss_pred HHHHhHHHHHHHHhhchh
Q 034685 45 EFISDNTNLINLVQKLPE 62 (87)
Q Consensus 45 ~~~~Dy~~l~~~L~~LPd 62 (87)
+..+|-+++.+.+.+|-+
T Consensus 383 ~~~~~~~~~~~~i~~~~~ 400 (463)
T 2xz3_A 383 VLEQDQQRLITAINQTHY 400 (463)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444455555444443
No 160
>1abv_A Delta subunit of the F1F0-ATP synthase; ATP synthesis, F1-ATPase, spectroscopy; NMR {Escherichia coli} SCOP: a.70.1.1 PDB: 2a7u_B
Probab=22.09 E-value=86 Score=19.68 Aligned_cols=18 Identities=17% Similarity=0.119 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 034685 22 VQKAAKRVQDALLEKQQE 39 (87)
Q Consensus 22 ~~~a~~~~~~ai~~~~~e 39 (87)
...++.+|-+|+-+...+
T Consensus 3 ~~~ia~rYA~AL~~~A~e 20 (134)
T 1abv_A 3 FITVARPYAKAAFDFAVE 20 (134)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHh
Confidence 346788999999887766
No 161
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=22.05 E-value=1.4e+02 Score=18.02 Aligned_cols=39 Identities=13% Similarity=0.067 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhchhhcc
Q 034685 27 KRVQDALLEKQQELERVKEFISDNTNLINLVQKLPEELH 65 (87)
Q Consensus 27 ~~~~~ai~~~~~el~~~q~~~~Dy~~l~~~L~~LPdkLs 65 (87)
++..++-.+...-..+.+...+|.+.+.++|...-.+|.
T Consensus 34 ~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLe 72 (81)
T 1ic2_A 34 ERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLE 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444445566677888888888887766664
No 162
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=21.40 E-value=1.6e+02 Score=18.34 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=16.0
Q ss_pred HHHHHHHhHHHHHHHHhhchhhcc
Q 034685 42 RVKEFISDNTNLINLVQKLPEELH 65 (87)
Q Consensus 42 ~~q~~~~Dy~~l~~~L~~LPdkLs 65 (87)
+......+|..|...+..|-..+.
T Consensus 44 r~~~L~~eN~~L~~~v~~L~~E~~ 67 (78)
T 1gu4_A 44 KVLELTAENERLQKKVEQLSRELS 67 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556778888877777766554
No 163
>3us8_A Isocitrate dehydrogenase [NADP]; PSI-biology, structural genomics; 2.25A {Sinorhizobium meliloti}
Probab=21.34 E-value=41 Score=26.90 Aligned_cols=32 Identities=16% Similarity=0.255 Sum_probs=23.0
Q ss_pred CCcc-cccccccCChhHH-------------HHHHHHHHHHHHHHH
Q 034685 6 AKGT-VTSLSSMFSVDDV-------------QKAAKRVQDALLEKQ 37 (87)
Q Consensus 6 ~kgt-~tpl~~~~~~~~~-------------~~a~~~~~~ai~~~~ 37 (87)
-||+ ++|++.+||..-. .++++++++||.+.-
T Consensus 343 Gk~i~ANP~A~IlS~ammL~hlG~~~~~~~l~~~A~~Ie~Av~~~l 388 (427)
T 3us8_A 343 GEETSTNSIASIFAWTRGLAHRAKLDGNAELAKFSETLERVCVDTV 388 (427)
T ss_dssp TCCCCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred CCCceeCHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHH
Confidence 4777 9999999987532 456777777776553
No 164
>3gaa_A Uncharacterized protein TA1441; the protein with unknown function from thermoplasma acidophi structural genomics,PSI, MCSG; 2.70A {Thermoplasma acidophilum}
Probab=21.30 E-value=1.1e+02 Score=21.92 Aligned_cols=26 Identities=8% Similarity=0.267 Sum_probs=20.3
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHH
Q 034685 17 FSVDDVQKAAKRVQDALLEKQQELER 42 (87)
Q Consensus 17 ~~~~~~~~a~~~~~~ai~~~~~el~~ 42 (87)
++.+++.+.++++++.|.+.++++++
T Consensus 214 i~~~~L~e~Ae~~e~~i~~l~e~~~~ 239 (252)
T 3gaa_A 214 IKTDLLEEQVKALDEQIKKIEEQYKE 239 (252)
T ss_dssp CCCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678888888888888888777765
No 165
>2gyq_A YCFI, putative structural protein; structural genomics, APC6105, iron-binding, PSI, protein STR initiative; 1.40A {Rhodopseudomonas palustris} SCOP: a.25.1.4
Probab=21.23 E-value=1.5e+02 Score=20.56 Aligned_cols=39 Identities=15% Similarity=0.325 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhchhhcccccc
Q 034685 24 KAAKRVQDALLEKQQELERVKEFISDNTNLINLVQKLPEELHHGIM 69 (87)
Q Consensus 24 ~a~~~~~~ai~~~~~el~~~q~~~~Dy~~l~~~L~~LPdkLsh~IM 69 (87)
.+.+++++-+++.+.+++|++ .+.++|..=|..+.-+.|
T Consensus 46 ~Lk~~l~~H~~eT~~qi~rLe-------~i~~~lg~~~~~~~c~am 84 (173)
T 2gyq_A 46 DLSQGLTSHLEETQKQIERLD-------QVFKKLGQKPSGVNCPAI 84 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHTCCSCSCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHcCCCCCCCCchHH
Confidence 444556666667777777766 455566655555553433
No 166
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=21.20 E-value=2e+02 Score=19.59 Aligned_cols=33 Identities=18% Similarity=0.117 Sum_probs=18.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 034685 18 SVDDVQKAAKRVQDALLEKQQELERVKEFISDN 50 (87)
Q Consensus 18 ~~~~~~~a~~~~~~ai~~~~~el~~~q~~~~Dy 50 (87)
+..++.|+..+++++=.+.+..++..+....+|
T Consensus 161 s~k~~eK~~~k~~ka~~~Y~~~v~~~n~~~~~~ 193 (276)
T 2v0o_A 161 TQREIEKAAVKSKKATDTYKLYVEKYALAKADF 193 (276)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666665555555555555555444
No 167
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=21.17 E-value=1.6e+02 Score=18.43 Aligned_cols=32 Identities=22% Similarity=0.409 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 034685 26 AKRVQDALLEKQQELERVKEFISDNTNLINLV 57 (87)
Q Consensus 26 ~~~~~~ai~~~~~el~~~q~~~~Dy~~l~~~L 57 (87)
.-.+.+.|+..+.++.+|.+-.++...-++.+
T Consensus 22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql 53 (83)
T 2xdj_A 22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQV 53 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34566666777777777766666554444333
No 168
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=21.05 E-value=2.4e+02 Score=23.87 Aligned_cols=38 Identities=11% Similarity=0.226 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Q 034685 21 DVQKAAKRVQDALLEKQQELERVKEFISDNTNLINLVQ 58 (87)
Q Consensus 21 ~~~~a~~~~~~ai~~~~~el~~~q~~~~Dy~~l~~~L~ 58 (87)
|+++=...++..|.+.-+.|.-||..++|-..=|.+|+
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLE 151 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLE 151 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555666666666665666666655555544444443
No 169
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=20.99 E-value=96 Score=25.70 Aligned_cols=33 Identities=15% Similarity=0.293 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH----------HhHHHHHHHHhhc
Q 034685 28 RVQDALLEKQQELERVKEFI----------SDNTNLINLVQKL 60 (87)
Q Consensus 28 ~~~~ai~~~~~el~~~q~~~----------~Dy~~l~~~L~~L 60 (87)
.+++.|.+++++|.+|..-. .+|+.|.+.|..|
T Consensus 3 ~~~~~i~~L~~~i~~~~~~Yy~~~~p~IsD~eYD~L~~eL~~l 45 (586)
T 4glx_A 3 SIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELREL 45 (586)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTCSSBCCTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHH
Confidence 35778899999999998754 4699999988876
No 170
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=20.97 E-value=1.9e+02 Score=19.05 Aligned_cols=12 Identities=25% Similarity=0.368 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 034685 36 KQQELERVKEFI 47 (87)
Q Consensus 36 ~~~el~~~q~~~ 47 (87)
..+++++++...
T Consensus 92 L~~~i~~l~~~l 103 (146)
T 3hh0_A 92 LLAEQERIAKVL 103 (146)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333334444333
No 171
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A*
Probab=20.47 E-value=1.5e+02 Score=24.07 Aligned_cols=52 Identities=13% Similarity=0.100 Sum_probs=32.3
Q ss_pred CCCCcccccccccCChhHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhHHHHHH
Q 034685 4 PTAKGTVTSLSSMFSVDDVQKAAKRVQDALLE-----KQQELERVKEFISDNTNLIN 55 (87)
Q Consensus 4 ~~~kgt~tpl~~~~~~~~~~~a~~~~~~ai~~-----~~~el~~~q~~~~Dy~~l~~ 55 (87)
...-|-.-|++..-+.++=.+..+.+.+.+.+ ..+|.++-+++.+.-+.+++
T Consensus 4 ~~~~g~t~pis~~~p~~~d~~~~~~L~~~l~~~~~~ps~ee~~~R~~vl~~L~~lv~ 60 (530)
T 2hhp_A 4 QKVFGITGPVSTVGATAAENKLNDSLIQELKKEGSFETEQETANRVQVLKILQELAQ 60 (530)
T ss_dssp CGGGCSSCCSCCCCCCHHHHHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred cccCccCCCCcCCCCChHHhhhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34456666788778877767777777777755 25555555555554444443
No 172
>3fav_A ESAT-6-like protein ESXB; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_A
Probab=20.39 E-value=1.4e+02 Score=17.71 Aligned_cols=15 Identities=0% Similarity=0.133 Sum_probs=7.0
Q ss_pred HHHHHHHHhhchhhc
Q 034685 50 NTNLINLVQKLPEEL 64 (87)
Q Consensus 50 y~~l~~~L~~LPdkL 64 (87)
...+.+.|..+-+.|
T Consensus 63 ~~~l~~~L~~i~~~l 77 (101)
T 3fav_A 63 ANKQKQELDEISTNI 77 (101)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334555555444443
No 173
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=20.38 E-value=64 Score=20.81 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 034685 25 AAKRVQDALLEKQQELERVKEF 46 (87)
Q Consensus 25 a~~~~~~ai~~~~~el~~~q~~ 46 (87)
..+.+...|+..+.+|++++..
T Consensus 17 ~~~~l~~~~~~l~~~l~~~~~~ 38 (182)
T 3kqg_A 17 KASALNTKIRALQGSLENMSKL 38 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555543
No 174
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=20.30 E-value=2.5e+02 Score=20.33 Aligned_cols=17 Identities=6% Similarity=0.329 Sum_probs=10.0
Q ss_pred CChhHHHHHHHHHHHHH
Q 034685 17 FSVDDVQKAAKRVQDAL 33 (87)
Q Consensus 17 ~~~~~~~~a~~~~~~ai 33 (87)
++..++.++..+++++.
T Consensus 189 ~~~k~~eK~~~k~~k~~ 205 (350)
T 3aco_A 189 LNPEQLKKLQDKIEKCK 205 (350)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 45577777665555543
No 175
>3u0c_A Invasin IPAB, 62 kDa antigen; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.05A {Shigella flexneri} PDB: 3gz1_P
Probab=20.07 E-value=2.7e+02 Score=20.58 Aligned_cols=34 Identities=15% Similarity=0.113 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHhhchhh
Q 034685 30 QDALLEKQQELERVKEFISDNTNLINLVQKLPEE 63 (87)
Q Consensus 30 ~~ai~~~~~el~~~q~~~~Dy~~l~~~L~~LPdk 63 (87)
+.++.+.+.-.+-+++-.+.|++.....+.+-+|
T Consensus 99 qTaL~eAQ~AtD~y~~Ainny~~Ads~~~~lekK 132 (201)
T 3u0c_A 99 NTLLSETEGLTRDYEKQINKLKNADSKIKDLENK 132 (201)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3333444444444444444444444444444333
No 176
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=20.02 E-value=1.4e+02 Score=17.19 Aligned_cols=36 Identities=22% Similarity=0.242 Sum_probs=17.7
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhchh
Q 034685 17 FSVDDVQKAAKRVQDALLEKQQELERVKEFISDNTNLINLVQKLPE 62 (87)
Q Consensus 17 ~~~~~~~~a~~~~~~ai~~~~~el~~~q~~~~Dy~~l~~~L~~LPd 62 (87)
++++||-.--+++.+.++... .++..|.+.+..|-.
T Consensus 20 Y~~~EVD~FLd~v~~~~~~l~----------~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 20 YDEDEVNEFLAQVRKDYEIVL----------RKKTELEAKVNELDE 55 (57)
T ss_dssp EEHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHC---
T ss_pred cCHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHh
Confidence 455666666655555544444 444455555555433
Done!