BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034686
(87 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Y7H|A Chain A, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|B Chain B, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|C Chain C, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|D Chain D, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|E Chain E, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|F Chain F, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|G Chain G, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|H Chain H, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7I|A Chain A, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7I|B Chain B, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
Length = 268
Score = 110 bits (274), Expect = 3e-25, Method: Composition-based stats.
Identities = 50/85 (58%), Positives = 62/85 (72%)
Query: 2 LLRPGSMFIDNLSKASKFSDEGYGSVKRVYLVCEEDIGLPKHFQHWMIQNYPVNEVMEIK 61
L+RP S+F ++LSKA F+DE +GSVKRVY+VC ED G+P+ FQ W I N V E +EIK
Sbjct: 175 LVRPSSLFXEDLSKAKYFTDERFGSVKRVYIVCTEDKGIPEEFQRWQIDNIGVTEAIEIK 234
Query: 62 GGDHMAMLSEPQKLCDCLSQISLKY 86
G DH A L EPQKLC L +I+ KY
Sbjct: 235 GADHXAXLCEPQKLCASLLEIAHKY 259
>pdb|1XKL|A Chain A, Crystal Structure Of Salicylic Acid-Binding Protein 2
(Sabp2) From Nicotiana Tabacum, Nesg Target Ar2241
pdb|1XKL|B Chain B, Crystal Structure Of Salicylic Acid-Binding Protein 2
(Sabp2) From Nicotiana Tabacum, Nesg Target Ar2241
pdb|1XKL|C Chain C, Crystal Structure Of Salicylic Acid-Binding Protein 2
(Sabp2) From Nicotiana Tabacum, Nesg Target Ar2241
pdb|1XKL|D Chain D, Crystal Structure Of Salicylic Acid-Binding Protein 2
(Sabp2) From Nicotiana Tabacum, Nesg Target Ar2241
Length = 273
Score = 110 bits (274), Expect = 3e-25, Method: Composition-based stats.
Identities = 50/85 (58%), Positives = 62/85 (72%)
Query: 2 LLRPGSMFIDNLSKASKFSDEGYGSVKRVYLVCEEDIGLPKHFQHWMIQNYPVNEVMEIK 61
L+RP S+F ++LSKA F+DE +GSVKRVY+VC ED G+P+ FQ W I N V E +EIK
Sbjct: 175 LVRPSSLFXEDLSKAKYFTDERFGSVKRVYIVCTEDKGIPEEFQRWQIDNIGVTEAIEIK 234
Query: 62 GGDHMAMLSEPQKLCDCLSQISLKY 86
G DH A L EPQKLC L +I+ KY
Sbjct: 235 GADHXAXLCEPQKLCASLLEIAHKY 259
>pdb|3DQZ|A Chain A, Structure Of The Hydroxynitrile Lyase From Arabidopsis
Thaliana
pdb|3DQZ|B Chain B, Structure Of The Hydroxynitrile Lyase From Arabidopsis
Thaliana
pdb|3DQZ|C Chain C, Structure Of The Hydroxynitrile Lyase From Arabidopsis
Thaliana
pdb|3DQZ|D Chain D, Structure Of The Hydroxynitrile Lyase From Arabidopsis
Thaliana
Length = 258
Score = 104 bits (259), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 50/86 (58%), Positives = 62/86 (72%)
Query: 1 MLLRPGSMFIDNLSKASKFSDEGYGSVKRVYLVCEEDIGLPKHFQHWMIQNYPVNEVMEI 60
ML R GS F ++LSK KFS+EGYGSV+RVY++ ED +P F WMI N+ V++V EI
Sbjct: 172 MLHRQGSFFTEDLSKKEKFSEEGYGSVQRVYVMSSEDKAIPCDFIRWMIDNFNVSKVYEI 231
Query: 61 KGGDHMAMLSEPQKLCDCLSQISLKY 86
GGDHM MLS+PQKL D LS I+ Y
Sbjct: 232 DGGDHMVMLSKPQKLFDSLSAIATDY 257
>pdb|3GZJ|A Chain A, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
pdb|3GZJ|B Chain B, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
pdb|3GZJ|C Chain C, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
pdb|3GZJ|D Chain D, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
pdb|3GZJ|E Chain E, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
Length = 258
Score = 96.3 bits (238), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 43/83 (51%), Positives = 56/83 (67%)
Query: 1 MLLRPGSMFIDNLSKASKFSDEGYGSVKRVYLVCEEDIGLPKHFQHWMIQNYPVNEVMEI 60
ML RPGS+F +L+KA KFS E YGSVKR Y+ C ED P FQ W +++ ++V EI
Sbjct: 174 MLTRPGSLFFQDLAKAKKFSTERYGSVKRAYIFCNEDKSFPVEFQKWFVESVGADKVKEI 233
Query: 61 KGGDHMAMLSEPQKLCDCLSQIS 83
K D M MLS+P+++C CL IS
Sbjct: 234 KEADAMGMLSQPREVCKCLLDIS 256
>pdb|2WFM|A Chain A, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
pdb|2WFM|B Chain B, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
pdb|2WFM|C Chain C, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
pdb|2WFM|D Chain D, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
pdb|2WFM|E Chain E, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
Length = 264
Score = 96.3 bits (238), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 43/83 (51%), Positives = 56/83 (67%)
Query: 1 MLLRPGSMFIDNLSKASKFSDEGYGSVKRVYLVCEEDIGLPKHFQHWMIQNYPVNEVMEI 60
ML RPGS+F +L+KA KFS E YGSVKR Y+ C ED P FQ W +++ ++V EI
Sbjct: 180 MLTRPGSLFFQDLAKAKKFSTERYGSVKRAYIFCNEDKSFPVEFQKWFVESVGADKVKEI 239
Query: 61 KGGDHMAMLSEPQKLCDCLSQIS 83
K D M MLS+P+++C CL IS
Sbjct: 240 KEADAMGMLSQPREVCKCLLDIS 262
>pdb|2WFL|A Chain A, Crystal Structure Of Polyneuridine Aldehyde Esterase
Length = 264
Score = 95.5 bits (236), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 43/83 (51%), Positives = 56/83 (67%)
Query: 1 MLLRPGSMFIDNLSKASKFSDEGYGSVKRVYLVCEEDIGLPKHFQHWMIQNYPVNEVMEI 60
ML RPGS+F +L+KA KFS E YGSVKR Y+ C ED P FQ W +++ ++V EI
Sbjct: 180 MLTRPGSLFFQDLAKAKKFSTERYGSVKRAYIFCNEDKSFPVEFQKWFVESVGADKVKEI 239
Query: 61 KGGDHMAMLSEPQKLCDCLSQIS 83
K DHM MLS+P+++ CL IS
Sbjct: 240 KEADHMGMLSQPREVXKCLLDIS 262
>pdb|2WFL|B Chain B, Crystal Structure Of Polyneuridine Aldehyde Esterase
Length = 264
Score = 91.7 bits (226), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 55/83 (66%)
Query: 1 MLLRPGSMFIDNLSKASKFSDEGYGSVKRVYLVCEEDIGLPKHFQHWMIQNYPVNEVMEI 60
ML RPGS+F +L+KA KFS E YGSVKR Y+ C ED P FQ W +++ ++V EI
Sbjct: 180 MLTRPGSLFFQDLAKAKKFSTERYGSVKRAYIFCNEDKSFPVEFQKWFVESVGADKVKEI 239
Query: 61 KGGDHMAMLSEPQKLCDCLSQIS 83
K DHM MLS+P+++ L IS
Sbjct: 240 KEADHMGMLSQPREVXKXLLDIS 262
>pdb|3RKT|A Chain A, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
pdb|3RKT|B Chain B, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
pdb|3RKT|C Chain C, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
pdb|3RKT|D Chain D, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
pdb|3RKT|E Chain E, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
pdb|3RKT|F Chain F, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
pdb|3RKT|G Chain G, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
pdb|3RKT|H Chain H, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
Length = 258
Score = 79.3 bits (194), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 62/88 (70%), Gaps = 2/88 (2%)
Query: 1 MLLRPGSMFIDNLSKASKFSDEGYGSVKRVYLVCEED-IGLPKHFQHWMIQNYPVNEVME 59
M++RPGS+F + L++ KF+++GYGS+ +VY+ ++D I LP FQ W I NYP ++V +
Sbjct: 172 MVMRPGSLFQNVLAQRPKFTEKGYGSIPKVYIWTDQDKIFLPD-FQRWQIANYPPDKVYQ 230
Query: 60 IKGGDHMAMLSEPQKLCDCLSQISLKYA 87
++GGDH L++ +++ L +++ YA
Sbjct: 231 VQGGDHKLQLTKTEEVAHILQEVADAYA 258
>pdb|3RKS|A Chain A, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) K176p Mutant
pdb|3RKS|B Chain B, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) K176p Mutant
pdb|3RKS|C Chain C, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) K176p Mutant
pdb|3RKS|D Chain D, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) K176p Mutant
Length = 258
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 62/88 (70%), Gaps = 2/88 (2%)
Query: 1 MLLRPGSMFIDNLSKASKFSDEGYGSVKRVYLVCEED-IGLPKHFQHWMIQNYPVNEVME 59
M++RPGS+F + L++ KF+++GYGS+K+VY+ ++D I LP FQ W I NY ++V +
Sbjct: 172 MVMRPGSLFQNVLAQRPKFTEKGYGSIKKVYIWTDQDKIFLPD-FQRWQIANYKPDKVYQ 230
Query: 60 IKGGDHMAMLSEPQKLCDCLSQISLKYA 87
++GGDH L++ +++ L +++ YA
Sbjct: 231 VQGGDHKLQLTKTEEVAHILQEVADAYA 258
>pdb|1EB8|A Chain A, Structure Determinants Of Substrate Specificity Of
Hydroxynitrile Lyase From Manihot Esculenta
pdb|1EB8|B Chain B, Structure Determinants Of Substrate Specificity Of
Hydroxynitrile Lyase From Manihot Esculenta
pdb|1EB9|A Chain A, Structure Determinants Of Substrate Specificity Of
Hydroxynitrile Lyase From Manihot Esculenta
pdb|1EB9|B Chain B, Structure Determinants Of Substrate Specificity Of
Hydroxynitrile Lyase From Manihot Esculenta
Length = 262
Score = 74.7 bits (182), Expect = 1e-14, Method: Composition-based stats.
Identities = 34/88 (38%), Positives = 61/88 (69%), Gaps = 2/88 (2%)
Query: 1 MLLRPGSMFIDNLSKASKFSDEGYGSVKRVYLVCEED-IGLPKHFQHWMIQNYPVNEVME 59
M++R GS+F + L++ KF+++GYGS+K+VY+ ++D I LP FQ W I NY ++V +
Sbjct: 176 MVMRKGSLFQNVLAQRPKFTEKGYGSIKKVYIWTDQDKIFLPD-FQRWQIANYKPDKVYQ 234
Query: 60 IKGGDHMAMLSEPQKLCDCLSQISLKYA 87
++GGDH L++ +++ L +++ YA
Sbjct: 235 VQGGDHKLQLTKTEEVAHILQEVADAYA 262
>pdb|1E89|A Chain A, On The Mechanism Of Cyanogenesis Catalyzed By
Hydroxynitrile Lyase From Manihot Esculenta. Crystal
Structure Of Active Site Mutant Ser80ala In Complex With
Acetone Cyanohydrin
pdb|1E89|B Chain B, On The Mechanism Of Cyanogenesis Catalyzed By
Hydroxynitrile Lyase From Manihot Esculenta. Crystal
Structure Of Active Site Mutant Ser80ala In Complex With
Acetone Cyanohydrin
pdb|1E8D|A Chain A, Mechanistic Aspects Of Cyanogenesis From Active Site
Mutant Ser80ala Of Hydroxynitrile Lyase From Manihot
Esculenta In Complex With Acetone Cyanohydrin
pdb|1E8D|B Chain B, Mechanistic Aspects Of Cyanogenesis From Active Site
Mutant Ser80ala Of Hydroxynitrile Lyase From Manihot
Esculenta In Complex With Acetone Cyanohydrin
Length = 262
Score = 74.7 bits (182), Expect = 1e-14, Method: Composition-based stats.
Identities = 34/88 (38%), Positives = 61/88 (69%), Gaps = 2/88 (2%)
Query: 1 MLLRPGSMFIDNLSKASKFSDEGYGSVKRVYLVCEED-IGLPKHFQHWMIQNYPVNEVME 59
M++R GS+F + L++ KF+++GYGS+K+VY+ ++D I LP FQ W I NY ++V +
Sbjct: 176 MVMRKGSLFQNVLAQRPKFTEKGYGSIKKVYIWTDQDKIFLPD-FQRWQIANYKPDKVYQ 234
Query: 60 IKGGDHMAMLSEPQKLCDCLSQISLKYA 87
++GGDH L++ +++ L +++ YA
Sbjct: 235 VQGGDHKLQLTKTEEVAHILQEVADAYA 262
>pdb|1DWQ|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Manihot
Esculenta In Complex With Substrates Acetone And
Chloroacetone:implications For The Mechanism Of
Cyanogenesis
pdb|1DWQ|B Chain B, Crystal Structure Of Hydroxynitrile Lyase From Manihot
Esculenta In Complex With Substrates Acetone And
Chloroacetone:implications For The Mechanism Of
Cyanogenesis
Length = 262
Score = 74.7 bits (182), Expect = 1e-14, Method: Composition-based stats.
Identities = 34/88 (38%), Positives = 61/88 (69%), Gaps = 2/88 (2%)
Query: 1 MLLRPGSMFIDNLSKASKFSDEGYGSVKRVYLVCEED-IGLPKHFQHWMIQNYPVNEVME 59
M++R GS+F + L++ KF+++GYGS+K+VY+ ++D I LP FQ W I NY ++V +
Sbjct: 176 MVMRKGSLFQNVLAQRPKFTEKGYGSIKKVYIWTDQDKIFLPD-FQRWQIANYKPDKVYQ 234
Query: 60 IKGGDHMAMLSEPQKLCDCLSQISLKYA 87
++GGDH L++ +++ L +++ YA
Sbjct: 235 VQGGDHKLQLTKTEEVAHILQEVADAYA 262
>pdb|1DWO|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Manihot
Esculenta In Complex With Substrates Acetone And
Chloroacetone:implications For The Mechanism Of
Cyanogenesis
pdb|1DWO|B Chain B, Crystal Structure Of Hydroxynitrile Lyase From Manihot
Esculenta In Complex With Substrates Acetone And
Chloroacetone:implications For The Mechanism Of
Cyanogenesis
pdb|1DWP|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Manihot
Esculenta At 2.2 Angstrom Resolution
pdb|1DWP|B Chain B, Crystal Structure Of Hydroxynitrile Lyase From Manihot
Esculenta At 2.2 Angstrom Resolution
Length = 262
Score = 74.7 bits (182), Expect = 1e-14, Method: Composition-based stats.
Identities = 34/88 (38%), Positives = 61/88 (69%), Gaps = 2/88 (2%)
Query: 1 MLLRPGSMFIDNLSKASKFSDEGYGSVKRVYLVCEED-IGLPKHFQHWMIQNYPVNEVME 59
M++R GS+F + L++ KF+++GYGS+K+VY+ ++D I LP FQ W I NY ++V +
Sbjct: 176 MVMRKGSLFQNVLAQRPKFTEKGYGSIKKVYIWTDQDKIFLPD-FQRWQIANYKPDKVYQ 234
Query: 60 IKGGDHMAMLSEPQKLCDCLSQISLKYA 87
++GGDH L++ +++ L +++ YA
Sbjct: 235 VQGGDHKLQLTKTEEVAHILQEVADAYA 262
>pdb|1SCI|A Chain A, K236l Mutant Of Hydroxynitrile Lyase From Hevea
Brasiliensis
pdb|1SCK|A Chain A, K236l Mutant Of Hydroxynitrile Lyase From Hevea
Brasiliensis In Complex With Acetone
pdb|1SCQ|A Chain A, K236l Mutant Of Hydroxynitrile Lyase From Hevea
Brasiliensis In Complex With Acetonecyanohydrin
Length = 257
Score = 72.8 bits (177), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 61/87 (70%), Gaps = 2/87 (2%)
Query: 1 MLLRPGSMFIDNLSKASKFSDEGYGSVKRVYLVCEED-IGLPKHFQHWMIQNYPVNEVME 59
ML R GS+F + L+K F+ EGYGS+K++Y+ ++D I LP+ FQ W I+NY ++V +
Sbjct: 171 MLTRKGSLFQNILAKRPFFTKEGYGSIKKIYVWTDQDEIFLPE-FQLWQIENYKPDKVYK 229
Query: 60 IKGGDHMAMLSEPQKLCDCLSQISLKY 86
++GGDH+ L++ +++ + L +++ Y
Sbjct: 230 VEGGDHLLQLTKTKEIAEILQEVADTY 256
>pdb|2G4L|A Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
Length = 257
Score = 71.6 bits (174), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 60/87 (68%), Gaps = 2/87 (2%)
Query: 1 MLLRPGSMFIDNLSKASKFSDEGYGSVKRVYLVCEED-IGLPKHFQHWMIQNYPVNEVME 59
ML R GS+F + L+K F+ EGYGS+K++Y+ ++D I LP+ FQ W I+NY ++V +
Sbjct: 171 MLTRKGSLFQNILAKRPFFTKEGYGSIKKIYVWTDQDEIFLPE-FQLWQIENYKPDKVYK 229
Query: 60 IKGGDHMAMLSEPQKLCDCLSQISLKY 86
++GGDH L++ +++ + L +++ Y
Sbjct: 230 VEGGDHKLQLTKTKEIAEILQEVADTY 256
>pdb|3STT|A Chain A, Crystal Structure Of Tomato Methylketone Synthase I Apo
Form
pdb|3STT|B Chain B, Crystal Structure Of Tomato Methylketone Synthase I Apo
Form
pdb|3STU|A Chain A, Crystal Structure Of Tomato Methylketone Synthase I
Complexed With Methyl-3-Hydroxydodecanoate
pdb|3STU|B Chain B, Crystal Structure Of Tomato Methylketone Synthase I
Complexed With Methyl-3-Hydroxydodecanoate
pdb|3STV|A Chain A, Crystal Structure Of Tomato Methylketone Synthase I
Complexed With 3- Hydroxyoctanoate
pdb|3STV|B Chain B, Crystal Structure Of Tomato Methylketone Synthase I
Complexed With 3- Hydroxyoctanoate
pdb|3STW|A Chain A, Crystal Structure Of Tomato Methylketone Synthase I
Complexed With 2- Tridecanone
pdb|3STW|B Chain B, Crystal Structure Of Tomato Methylketone Synthase I
Complexed With 2- Tridecanone
Length = 267
Score = 71.6 bits (174), Expect = 1e-13, Method: Composition-based stats.
Identities = 37/86 (43%), Positives = 56/86 (65%), Gaps = 1/86 (1%)
Query: 2 LLRPGSMFI-DNLSKASKFSDEGYGSVKRVYLVCEEDIGLPKHFQHWMIQNYPVNEVMEI 60
L+RP +++ +++SK S + YGSVKRV++V E+ L K F MI+ P +EV EI
Sbjct: 181 LVRPLYLYLAEDISKEVVLSSKRYGSVKRVFIVATENDALKKEFLKLMIEKNPPDEVKEI 240
Query: 61 KGGDHMAMLSEPQKLCDCLSQISLKY 86
+G DH+ M+S+PQ+L L I+ KY
Sbjct: 241 EGSDHVTMMSKPQQLFTTLLSIANKY 266
>pdb|3STY|A Chain A, Crystal Structure Of Tomato Methylketone Synthase I T18a
Mutant
pdb|3STY|B Chain B, Crystal Structure Of Tomato Methylketone Synthase I T18a
Mutant
Length = 267
Score = 71.6 bits (174), Expect = 1e-13, Method: Composition-based stats.
Identities = 37/86 (43%), Positives = 56/86 (65%), Gaps = 1/86 (1%)
Query: 2 LLRPGSMFI-DNLSKASKFSDEGYGSVKRVYLVCEEDIGLPKHFQHWMIQNYPVNEVMEI 60
L+RP +++ +++SK S + YGSVKRV++V E+ L K F MI+ P +EV EI
Sbjct: 181 LVRPLYLYLAEDISKEVVLSSKRYGSVKRVFIVATENDALKKEFLKLMIEKNPPDEVKEI 240
Query: 61 KGGDHMAMLSEPQKLCDCLSQISLKY 86
+G DH+ M+S+PQ+L L I+ KY
Sbjct: 241 EGSDHVTMMSKPQQLFTTLLSIANKY 266
>pdb|1YAS|A Chain A, Hydroxynitrile Lyase Complexed With Histidine
pdb|7YAS|A Chain A, Hydroxynitrile Lyase, Low Temperature Native Structure
pdb|2YAS|A Chain A, Hydroxynitrile Lyase From Hevea Brasiliensis Complexed
With Rhodanide
pdb|3YAS|A Chain A, Hydroxynitrile Lyase Complexed With Acetone
pdb|4YAS|A Chain A, Hydroxynitrile Lyase Complexed With Chloralhydrate
pdb|5YAS|A Chain A, Hydroxynitrile Lyase Complexed With Hexafluoroacetone
pdb|6YAS|A Chain A, Hydroxynitrile Lyase From Hevea Brasiliensis, Room
Temperature Structure
pdb|1QJ4|A Chain A, Hydroxynitrile-lyase From Hevea Brasiliensis At Atomic
Resolution
pdb|1SC9|A Chain A, Hydroxynitrile Lyase From Hevea Brasiliensis In Complex
With The Natural Substrate Acetone Cyanohydrin
pdb|3C6X|A Chain A, Hnl From Hevea Brasiliensis To Atomic Resolution
pdb|3C6Y|A Chain A, Hnl From Hevea Brasiliensis To Atomic Resolution
pdb|3C6Z|A Chain A, Hnl From Hevea Brasiliensis To Atomic Resolution
pdb|3C70|A Chain A, Hnl From Hevea Brasiliensis To Atomic Resolution
Length = 257
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 60/87 (68%), Gaps = 2/87 (2%)
Query: 1 MLLRPGSMFIDNLSKASKFSDEGYGSVKRVYLVCEED-IGLPKHFQHWMIQNYPVNEVME 59
ML R GS+F + L+K F+ EGYGS+K++Y+ ++D I LP+ FQ W I+NY ++V +
Sbjct: 171 MLTRKGSLFQNILAKRPFFTKEGYGSIKKIYVWTDQDEIFLPE-FQLWQIENYKPDKVYK 229
Query: 60 IKGGDHMAMLSEPQKLCDCLSQISLKY 86
++GGDH L++ +++ + L +++ Y
Sbjct: 230 VEGGDHKLQLTKTKEIAEILQEVADTY 256
>pdb|1YB6|A Chain A, Hydroxynitrile Lyase From Hevea Brasiliensis In Complex
With Mandelonitrile
pdb|1YB7|A Chain A, Hydroxynitrile Lyase From Hevea Brasiliensis In Complex
With 2,3- Dimethyl-2-Hydroxy-Butyronitrile
Length = 256
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 60/87 (68%), Gaps = 2/87 (2%)
Query: 1 MLLRPGSMFIDNLSKASKFSDEGYGSVKRVYLVCEED-IGLPKHFQHWMIQNYPVNEVME 59
ML R GS+F + L+K F+ EGYGS+K++Y+ ++D I LP+ FQ W I+NY ++V +
Sbjct: 170 MLTRKGSLFQNILAKRPFFTKEGYGSIKKIYVWTDQDEIFLPE-FQLWQIENYKPDKVYK 228
Query: 60 IKGGDHMAMLSEPQKLCDCLSQISLKY 86
++GGDH L++ +++ + L +++ Y
Sbjct: 229 VEGGDHKLQLTKTKEIAEILQEVADTY 255
>pdb|3STX|A Chain A, Crystal Structure Of Tomato Methylketone Synthase I H243a
Variant Complexed With Beta-Ketoheptanoate
pdb|3STX|B Chain B, Crystal Structure Of Tomato Methylketone Synthase I H243a
Variant Complexed With Beta-Ketoheptanoate
Length = 267
Score = 68.2 bits (165), Expect = 1e-12, Method: Composition-based stats.
Identities = 36/86 (41%), Positives = 55/86 (63%), Gaps = 1/86 (1%)
Query: 2 LLRPGSMFI-DNLSKASKFSDEGYGSVKRVYLVCEEDIGLPKHFQHWMIQNYPVNEVMEI 60
L+RP +++ +++SK S + YGSVKRV++V E+ L K F MI+ P +EV EI
Sbjct: 181 LVRPLYLYLAEDISKEVVLSSKRYGSVKRVFIVATENDALKKEFLKLMIEKNPPDEVKEI 240
Query: 61 KGGDHMAMLSEPQKLCDCLSQISLKY 86
+G D + M+S+PQ+L L I+ KY
Sbjct: 241 EGSDAVTMMSKPQQLFTTLLSIANKY 266
>pdb|1WOM|A Chain A, Crystal Structure Of Rsbq
pdb|1WOM|B Chain B, Crystal Structure Of Rsbq
pdb|1WPR|A Chain A, Crystal Structure Of Rsbq Inhibited By Pmsf
pdb|1WPR|B Chain B, Crystal Structure Of Rsbq Inhibited By Pmsf
Length = 271
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 12 NLSKASKFSDE----GYGSVKRVYLVCEEDIGLPKHFQHWMIQNYPVNEVMEIKGGDHMA 67
+KA+ FSD +V + L C +DI P +M Q+ P + + +++ H
Sbjct: 192 QFAKAAFFSDHREDLSKVTVPSLILQCADDIIAPATVGKYMHQHLPYSSLKQMEARGHCP 251
Query: 68 MLSEPQK 74
+S P +
Sbjct: 252 HMSHPDE 258
>pdb|2QBY|B Chain B, Crystal Structure Of A Heterodimer Of Cdc6ORC1
INITIATORS Bound To Origin Dna (From S. Solfataricus)
Length = 384
Score = 26.6 bits (57), Expect = 3.7, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 7 SMFIDNLSKASKFSDEGYGSVKRVYLVCEEDIGLPK 42
S +I N + K DE Y VK+ Y+ C E G P+
Sbjct: 62 SKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQ 97
>pdb|3B4D|A Chain A, Crystal Structure Of Human Pabpn1 Rrm
pdb|3B4M|A Chain A, Crystal Structure Of Human Pabpn1 Rrm
pdb|3B4M|B Chain B, Crystal Structure Of Human Pabpn1 Rrm
pdb|3B4M|C Chain C, Crystal Structure Of Human Pabpn1 Rrm
pdb|3B4M|D Chain D, Crystal Structure Of Human Pabpn1 Rrm
Length = 96
Score = 25.4 bits (54), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 23 GYGSVKRVYLVCEEDIGLPKHFQH 46
G GSV RV ++C++ G PK F +
Sbjct: 28 GCGSVNRVTILCDKFSGHPKGFAY 51
>pdb|3UCG|A Chain A, Crystal Structure Of A Rna Binding Domain Of
Hypothetical Polyadenylate-Binding Protein (Pabpn1)
From Homo Sapiens At 1.95 A Resolution
Length = 89
Score = 25.4 bits (54), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 23 GYGSVKRVYLVCEEDIGLPKHFQH 46
G GSV RV ++C++ G PK F +
Sbjct: 29 GCGSVNRVTILCDKFSGHPKGFAY 52
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,629,636
Number of Sequences: 62578
Number of extensions: 90223
Number of successful extensions: 175
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 151
Number of HSP's gapped (non-prelim): 24
length of query: 87
length of database: 14,973,337
effective HSP length: 55
effective length of query: 32
effective length of database: 11,531,547
effective search space: 369009504
effective search space used: 369009504
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)