Query 034686
Match_columns 87
No_of_seqs 101 out of 1041
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 05:26:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034686.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034686hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02211 methyl indole-3-aceta 99.7 9.7E-16 2.1E-20 104.1 9.2 81 2-85 188-269 (273)
2 PLN02965 Probable pheophorbida 99.6 9.7E-15 2.1E-19 97.4 8.6 63 25-87 192-254 (255)
3 PRK10349 carboxylesterase BioH 99.4 2.9E-12 6.3E-17 85.1 7.5 60 26-85 196-255 (256)
4 KOG1454 Predicted hydrolase/ac 99.4 3.5E-12 7.6E-17 89.2 7.9 63 24-86 262-324 (326)
5 TIGR01738 bioH putative pimelo 99.3 6.7E-12 1.5E-16 80.7 7.3 58 26-83 188-245 (245)
6 TIGR03343 biphenyl_bphD 2-hydr 99.3 6.5E-12 1.4E-16 84.0 7.3 59 26-84 223-281 (282)
7 PLN02824 hydrolase, alpha/beta 99.3 6.3E-12 1.4E-16 85.2 7.2 60 26-85 234-293 (294)
8 PRK03204 haloalkane dehalogena 99.3 8.6E-12 1.9E-16 84.9 6.8 59 26-84 227-286 (286)
9 PRK07581 hypothetical protein; 99.3 2.7E-11 6E-16 83.8 8.2 61 26-86 275-336 (339)
10 PLN02679 hydrolase, alpha/beta 99.3 1.7E-11 3.7E-16 86.1 6.9 61 26-86 292-357 (360)
11 TIGR02240 PHA_depoly_arom poly 99.2 3.8E-11 8.2E-16 80.8 7.8 60 26-86 207-266 (276)
12 PRK03592 haloalkane dehalogena 99.2 1.9E-11 4.2E-16 82.8 6.3 61 26-86 228-289 (295)
13 PLN03087 BODYGUARD 1 domain co 99.2 5.4E-11 1.2E-15 87.0 7.8 60 26-85 418-478 (481)
14 PRK08775 homoserine O-acetyltr 99.2 4.1E-11 8.9E-16 83.4 6.3 60 26-85 277-338 (343)
15 TIGR03056 bchO_mg_che_rel puta 99.2 1E-10 2.2E-15 77.5 7.6 59 26-84 220-278 (278)
16 PRK10673 acyl-CoA esterase; Pr 99.2 1.3E-10 2.8E-15 76.6 7.4 60 26-85 195-254 (255)
17 TIGR03611 RutD pyrimidine util 99.2 1.3E-10 2.8E-15 75.5 7.4 59 26-84 198-256 (257)
18 PRK00870 haloalkane dehalogena 99.2 6.2E-11 1.3E-15 80.8 5.9 60 26-86 239-301 (302)
19 PLN02578 hydrolase 99.2 2.2E-10 4.7E-15 80.2 8.0 58 26-84 296-353 (354)
20 TIGR01392 homoserO_Ac_trn homo 99.1 7.6E-11 1.7E-15 82.3 5.4 58 27-84 289-351 (351)
21 PRK00175 metX homoserine O-ace 99.1 1.2E-10 2.7E-15 82.3 6.3 59 27-85 310-373 (379)
22 TIGR02427 protocat_pcaD 3-oxoa 99.1 3.2E-10 6.9E-15 72.9 7.4 58 26-83 193-250 (251)
23 PLN03084 alpha/beta hydrolase 99.1 4E-10 8.7E-15 80.4 7.6 58 26-84 325-382 (383)
24 TIGR01250 pro_imino_pep_2 prol 99.1 4.7E-10 1E-14 73.7 7.3 58 26-84 231-288 (288)
25 PRK06489 hypothetical protein; 99.1 4.8E-10 1E-14 78.6 7.6 60 26-86 292-357 (360)
26 PF12697 Abhydrolase_6: Alpha/ 99.1 3.1E-10 6.8E-15 71.7 4.9 53 26-78 176-228 (228)
27 PLN02385 hydrolase; alpha/beta 99.0 1.3E-09 2.9E-14 75.9 7.6 61 26-86 279-345 (349)
28 PLN02894 hydrolase, alpha/beta 99.0 2.5E-09 5.5E-14 76.4 7.8 60 26-86 325-385 (402)
29 TIGR03695 menH_SHCHC 2-succiny 99.0 2.3E-09 5.1E-14 68.6 6.6 59 25-84 193-251 (251)
30 PRK06765 homoserine O-acetyltr 98.9 2.9E-09 6.4E-14 76.1 7.0 60 26-85 323-387 (389)
31 PRK11126 2-succinyl-6-hydroxy- 98.9 4.7E-09 1E-13 68.8 6.3 54 26-85 188-241 (242)
32 PF00561 Abhydrolase_1: alpha/ 98.9 3.7E-09 8.1E-14 67.9 5.4 56 25-80 174-229 (230)
33 PLN02298 hydrolase, alpha/beta 98.9 9E-09 2E-13 71.0 6.9 60 26-85 251-316 (330)
34 KOG2382 Predicted alpha/beta h 98.9 7.5E-09 1.6E-13 72.2 6.1 59 27-85 254-312 (315)
35 PHA02857 monoglyceride lipase; 98.8 2E-08 4.4E-13 67.3 7.8 60 26-85 209-272 (276)
36 PRK05855 short chain dehydroge 98.8 7.7E-09 1.7E-13 75.2 5.9 61 24-85 231-291 (582)
37 PRK14875 acetoin dehydrogenase 98.8 9.8E-09 2.1E-13 71.2 5.7 57 26-85 314-370 (371)
38 KOG4178 Soluble epoxide hydrol 98.8 3E-08 6.6E-13 69.3 7.0 61 27-87 259-321 (322)
39 PRK10749 lysophospholipase L2; 98.7 3.1E-08 6.7E-13 68.8 6.5 60 26-85 259-328 (330)
40 PLN02980 2-oxoglutarate decarb 98.7 2.7E-08 5.7E-13 81.2 6.8 59 27-86 1569-1639(1655)
41 PLN02511 hydrolase 98.7 1.5E-08 3.3E-13 72.1 3.9 59 27-85 299-364 (388)
42 PLN02652 hydrolase; alpha/beta 98.6 2.1E-07 4.4E-12 66.7 7.7 60 26-85 324-386 (395)
43 TIGR01249 pro_imino_pep_1 prol 98.6 3.6E-07 7.9E-12 62.6 8.0 58 26-86 248-305 (306)
44 COG0596 MhpC Predicted hydrola 98.5 1.1E-06 2.4E-11 55.5 7.2 58 26-83 221-279 (282)
45 PRK05077 frsA fermentation/res 98.3 4.4E-06 9.6E-11 60.2 7.8 58 26-86 355-412 (414)
46 TIGR01607 PST-A Plasmodium sub 98.3 6.1E-06 1.3E-10 57.6 8.0 59 26-84 270-331 (332)
47 PLN02872 triacylglycerol lipas 98.3 3.7E-06 8E-11 60.4 6.9 61 26-86 325-389 (395)
48 PRK10985 putative hydrolase; P 98.2 3.7E-06 8E-11 58.3 6.0 59 26-84 255-318 (324)
49 TIGR01838 PHA_synth_I poly(R)- 98.2 3.3E-06 7.1E-11 62.8 5.7 48 26-73 415-462 (532)
50 PF08386 Abhydrolase_4: TAP-li 98.2 1.7E-05 3.6E-10 47.1 7.2 59 26-84 34-92 (103)
51 KOG2984 Predicted hydrolase [G 97.9 1.2E-05 2.5E-10 54.0 3.8 61 25-85 215-275 (277)
52 PRK07868 acyl-CoA synthetase; 97.9 3.7E-05 8.1E-10 60.5 6.8 59 27-85 298-360 (994)
53 KOG4409 Predicted hydrolase/ac 97.8 8.8E-05 1.9E-09 52.8 6.7 60 26-86 303-364 (365)
54 PF00326 Peptidase_S9: Prolyl 97.8 3.8E-05 8.2E-10 49.9 4.6 62 25-86 143-209 (213)
55 TIGR01836 PHA_synth_III_C poly 97.8 9.5E-05 2.1E-09 51.7 6.3 59 26-85 286-349 (350)
56 TIGR03100 hydr1_PEP hydrolase, 97.6 0.00014 3E-09 49.4 5.4 58 26-84 207-273 (274)
57 PF12695 Abhydrolase_5: Alpha/ 97.6 0.00013 2.8E-09 44.0 4.3 42 25-66 103-145 (145)
58 PRK11460 putative hydrolase; P 97.5 0.00035 7.5E-09 46.6 5.4 59 25-83 147-209 (232)
59 PRK10566 esterase; Provisional 97.4 0.00064 1.4E-08 44.8 6.4 56 26-85 186-247 (249)
60 PRK11071 esterase YqiA; Provis 97.4 0.00074 1.6E-08 43.8 6.5 53 27-84 137-189 (190)
61 PF05705 DUF829: Eukaryotic pr 97.3 0.00057 1.2E-08 45.5 4.5 56 27-82 179-239 (240)
62 PRK13604 luxD acyl transferase 97.2 0.00096 2.1E-08 46.8 5.6 43 26-68 202-246 (307)
63 COG1506 DAP2 Dipeptidyl aminop 97.1 0.0016 3.6E-08 49.2 6.1 73 13-85 538-615 (620)
64 COG1647 Esterase/lipase [Gener 97.0 0.002 4.2E-08 43.6 5.4 58 27-84 182-242 (243)
65 PF02230 Abhydrolase_2: Phosph 97.0 0.0014 2.9E-08 43.0 4.4 58 24-85 153-214 (216)
66 PF06821 Ser_hydrolase: Serine 97.0 0.0017 3.6E-08 41.8 4.7 43 27-70 115-157 (171)
67 COG2021 MET2 Homoserine acetyl 97.0 0.004 8.6E-08 44.7 6.8 59 27-85 307-367 (368)
68 KOG4667 Predicted esterase [Li 97.0 0.0014 3.1E-08 44.4 4.2 43 27-69 200-242 (269)
69 COG3208 GrsT Predicted thioest 96.8 0.0062 1.4E-07 41.5 6.5 66 18-84 168-234 (244)
70 COG2267 PldB Lysophospholipase 96.7 0.0075 1.6E-07 41.9 6.5 61 25-85 227-293 (298)
71 PF09752 DUF2048: Uncharacteri 96.7 0.0037 8E-08 44.6 5.0 56 28-84 291-347 (348)
72 KOG1552 Predicted alpha/beta h 96.6 0.006 1.3E-07 41.9 5.0 58 26-84 192-250 (258)
73 KOG2551 Phospholipase/carboxyh 96.3 0.022 4.8E-07 38.5 6.3 58 25-83 162-221 (230)
74 PTZ00472 serine carboxypeptida 96.2 0.015 3.3E-07 42.7 5.7 58 27-84 365-457 (462)
75 PF03959 FSH1: Serine hydrolas 96.1 0.0065 1.4E-07 40.0 2.9 45 25-70 160-205 (212)
76 PF01738 DLH: Dienelactone hyd 96.0 0.045 9.8E-07 35.6 6.8 47 25-71 144-194 (218)
77 PF08840 BAAT_C: BAAT / Acyl-C 96.0 0.027 5.8E-07 37.3 5.6 42 26-67 115-163 (213)
78 COG0429 Predicted hydrolase of 96.0 0.015 3.2E-07 41.4 4.5 60 27-86 275-340 (345)
79 COG1073 Hydrolases of the alph 95.7 0.059 1.3E-06 35.5 6.5 59 27-85 233-296 (299)
80 COG3243 PhaC Poly(3-hydroxyalk 95.7 0.023 5E-07 41.6 4.7 48 25-72 329-376 (445)
81 PF00450 Peptidase_S10: Serine 95.7 0.024 5.2E-07 40.1 4.8 58 27-84 331-414 (415)
82 PF10142 PhoPQ_related: PhoPQ- 95.7 0.031 6.7E-07 40.2 5.2 56 26-84 262-318 (367)
83 COG0400 Predicted esterase [Ge 95.5 0.036 7.9E-07 36.9 4.7 58 22-80 142-203 (207)
84 PLN02442 S-formylglutathione h 95.2 0.079 1.7E-06 36.3 5.8 54 25-83 216-274 (283)
85 COG3545 Predicted esterase of 95.0 0.052 1.1E-06 35.5 4.1 40 27-67 118-157 (181)
86 KOG4391 Predicted alpha/beta h 95.0 0.04 8.6E-07 37.7 3.7 61 24-85 219-281 (300)
87 TIGR01849 PHB_depoly_PhaZ poly 94.7 0.073 1.6E-06 38.8 4.7 63 23-85 335-405 (406)
88 KOG2564 Predicted acetyltransf 94.6 0.03 6.4E-07 39.4 2.4 57 27-86 271-327 (343)
89 TIGR01839 PHA_synth_II poly(R) 94.3 0.15 3.2E-06 38.7 5.6 48 25-72 440-487 (560)
90 PF03096 Ndr: Ndr family; Int 94.3 0.22 4.7E-06 34.8 6.1 58 27-86 220-279 (283)
91 PF05448 AXE1: Acetyl xylan es 94.2 0.13 2.7E-06 36.3 5.0 60 23-85 259-319 (320)
92 PLN02213 sinapoylglucose-malat 94.1 0.28 6.2E-06 34.3 6.6 58 26-84 233-315 (319)
93 KOG3253 Predicted alpha/beta h 93.8 0.46 1E-05 36.8 7.5 60 27-86 305-374 (784)
94 KOG1455 Lysophospholipase [Lip 93.7 0.21 4.6E-06 35.3 5.3 58 27-84 247-310 (313)
95 PF04301 DUF452: Protein of un 93.7 0.11 2.3E-06 34.9 3.7 37 30-69 169-205 (213)
96 COG2945 Predicted hydrolase of 93.7 0.26 5.7E-06 32.9 5.4 55 27-83 150-204 (210)
97 KOG1551 Uncharacterized conser 93.6 0.21 4.5E-06 35.2 5.0 57 29-86 309-366 (371)
98 PLN02209 serine carboxypeptida 92.9 0.57 1.2E-05 34.5 6.7 58 26-84 351-433 (437)
99 PLN03016 sinapoylglucose-malat 92.4 0.79 1.7E-05 33.7 6.8 58 26-84 347-429 (433)
100 TIGR02821 fghA_ester_D S-formy 91.9 0.37 8E-06 32.7 4.4 43 27-69 212-259 (275)
101 KOG1838 Alpha/beta hydrolase [ 91.7 0.57 1.2E-05 34.3 5.4 46 26-71 322-368 (409)
102 KOG3043 Predicted hydrolase re 90.9 0.58 1.3E-05 31.9 4.4 55 22-76 160-224 (242)
103 PF03583 LIP: Secretory lipase 90.8 0.56 1.2E-05 32.5 4.4 51 25-75 218-275 (290)
104 KOG1282 Serine carboxypeptidas 90.8 1 2.2E-05 33.5 5.9 58 27-84 364-446 (454)
105 KOG2931 Differentiation-relate 90.7 0.77 1.7E-05 32.5 5.0 57 27-85 247-305 (326)
106 PRK10162 acetyl esterase; Prov 90.6 1.5 3.2E-05 30.5 6.5 41 27-67 249-291 (318)
107 PF05728 UPF0227: Uncharacteri 90.5 2.2 4.8E-05 27.8 6.8 51 27-82 135-185 (187)
108 PRK05371 x-prolyl-dipeptidyl a 89.0 2.9 6.2E-05 33.0 7.4 59 26-85 455-518 (767)
109 PF07859 Abhydrolase_3: alpha/ 86.3 0.79 1.7E-05 29.3 2.6 41 27-67 167-209 (211)
110 PF00975 Thioesterase: Thioest 85.9 2.6 5.6E-05 27.2 5.0 57 26-83 168-229 (229)
111 PRK10115 protease 2; Provision 85.7 3.2 6.9E-05 32.2 6.0 49 18-66 597-653 (686)
112 COG0412 Dienelactone hydrolase 84.8 5.5 0.00012 26.8 6.2 46 25-70 157-206 (236)
113 COG4287 PqaA PhoPQ-activated p 83.8 0.9 1.9E-05 33.4 2.1 58 27-87 330-388 (507)
114 COG4757 Predicted alpha/beta h 83.5 4.6 9.9E-05 28.0 5.3 64 20-83 208-280 (281)
115 COG0657 Aes Esterase/lipase [L 83.1 7.3 0.00016 26.7 6.4 41 27-67 246-288 (312)
116 PLN00021 chlorophyllase 81.9 6.9 0.00015 27.4 6.0 47 26-72 189-246 (313)
117 KOG4627 Kynurenine formamidase 81.3 1.6 3.4E-05 29.8 2.5 47 27-73 208-254 (270)
118 PF06850 PHB_depo_C: PHB de-po 80.8 5.7 0.00012 26.5 4.9 66 20-85 128-201 (202)
119 COG2939 Carboxypeptidase C (ca 80.7 2 4.3E-05 32.3 3.0 57 27-84 426-489 (498)
120 KOG2624 Triglyceride lipase-ch 80.0 9.3 0.0002 28.1 6.2 61 26-86 332-398 (403)
121 PF06342 DUF1057: Alpha/beta h 79.8 7.1 0.00015 27.6 5.3 57 27-83 213-296 (297)
122 PF06500 DUF1100: Alpha/beta h 79.7 4.3 9.4E-05 29.9 4.5 44 25-68 351-395 (411)
123 PF08538 DUF1749: Protein of u 79.5 1.2 2.7E-05 31.4 1.6 57 27-83 233-302 (303)
124 COG3571 Predicted hydrolase of 79.3 5.7 0.00012 26.2 4.5 41 26-67 142-182 (213)
125 KOG2112 Lysophospholipase [Lip 79.1 3 6.5E-05 27.9 3.2 54 26-79 144-201 (206)
126 PF02273 Acyl_transf_2: Acyl t 76.4 7.5 0.00016 27.2 4.6 43 26-68 195-239 (294)
127 TIGR01840 esterase_phb esteras 76.4 2.2 4.7E-05 27.6 2.0 26 27-52 168-194 (212)
128 KOG2565 Predicted hydrolases o 72.6 7.1 0.00015 28.9 3.9 59 25-85 403-462 (469)
129 PF06057 VirJ: Bacterial virul 71.5 19 0.00041 23.9 5.5 51 25-84 138-190 (192)
130 KOG2100 Dipeptidyl aminopeptid 71.2 18 0.00039 28.6 6.2 63 21-83 676-744 (755)
131 PF10503 Esterase_phd: Esteras 69.1 6.1 0.00013 26.5 2.8 30 23-52 166-195 (220)
132 KOG3975 Uncharacterized conser 68.5 23 0.00049 24.9 5.5 57 27-83 243-300 (301)
133 PF06028 DUF915: Alpha/beta hy 68.2 14 0.0003 25.3 4.5 56 27-83 185-252 (255)
134 KOG1515 Arylacetamide deacetyl 67.8 19 0.0004 25.8 5.2 57 27-85 269-334 (336)
135 COG3458 Acetyl esterase (deace 67.6 9.6 0.00021 27.0 3.6 46 23-68 256-302 (321)
136 cd08769 DAP_dppA_2 Peptidase M 65.1 44 0.00095 23.3 6.5 58 22-85 143-202 (270)
137 PRK10252 entF enterobactin syn 57.8 15 0.00032 30.0 3.5 54 27-81 1237-1292(1296)
138 COG4188 Predicted dienelactone 57.3 6.5 0.00014 28.6 1.4 52 24-75 249-303 (365)
139 PF13709 DUF4159: Domain of un 55.8 57 0.0012 21.6 6.1 49 15-63 42-90 (207)
140 cd03348 pro_PheOH Prokaryotic 54.5 4.8 0.0001 27.4 0.3 18 63-81 116-133 (228)
141 TIGR01267 Phe4hydrox_mono phen 53.7 6 0.00013 27.2 0.7 18 63-81 116-133 (248)
142 cd00361 arom_aa_hydroxylase Bi 53.4 5.5 0.00012 27.0 0.5 19 63-82 110-128 (221)
143 KOG2521 Uncharacterized conser 53.0 32 0.00069 24.9 4.2 67 19-85 217-289 (350)
144 smart00824 PKS_TE Thioesterase 52.5 8.2 0.00018 23.8 1.2 55 26-81 153-210 (212)
145 PF10230 DUF2305: Uncharacteri 52.3 63 0.0014 22.0 5.5 41 26-66 221-264 (266)
146 COG4481 Uncharacterized protei 51.8 5.6 0.00012 21.2 0.3 14 60-73 37-50 (60)
147 PF05576 Peptidase_S37: PS-10 50.3 23 0.00049 26.5 3.2 56 27-84 352-412 (448)
148 PRK11913 phhA phenylalanine 4- 49.6 7.3 0.00016 27.2 0.6 19 63-82 132-150 (275)
149 COG3186 Phenylalanine-4-hydrox 48.5 7.2 0.00016 27.2 0.4 11 63-73 147-157 (291)
150 PF00351 Biopterin_H: Biopteri 48.4 5.6 0.00012 28.5 -0.1 18 64-82 171-188 (332)
151 COG0336 TrmD tRNA-(guanine-N1) 45.6 26 0.00056 24.1 2.7 42 1-49 60-101 (240)
152 PF07519 Tannase: Tannase and 44.6 1E+02 0.0022 23.1 5.9 58 27-84 354-425 (474)
153 PF10605 3HBOH: 3HB-oligomer h 44.2 21 0.00046 28.0 2.4 43 24-66 553-603 (690)
154 PF11339 DUF3141: Protein of u 43.5 99 0.0021 24.0 5.7 44 26-69 297-351 (581)
155 PRK14055 aromatic amino acid h 39.6 13 0.00027 27.0 0.5 17 63-80 203-219 (362)
156 cd03346 eu_TrpOH Eukaryotic tr 39.5 13 0.00027 26.3 0.5 18 63-81 170-187 (287)
157 cd03345 eu_TyrOH Eukaryotic ty 39.5 13 0.00028 26.3 0.6 18 63-81 169-186 (298)
158 COG2830 Uncharacterized protei 39.1 21 0.00045 23.6 1.5 34 32-68 170-203 (214)
159 KOG2541 Palmitoyl protein thio 38.8 1.1E+02 0.0023 21.8 4.9 54 27-80 24-85 (296)
160 COG1003 GcvP Glycine cleavage 38.4 95 0.0021 23.6 4.9 58 24-82 176-233 (496)
161 cd03347 eu_PheOH Eukaryotic ph 37.1 15 0.00033 26.1 0.6 18 63-81 170-187 (306)
162 PF02129 Peptidase_S15: X-Pro 36.3 1.3E+02 0.0029 20.1 5.4 43 23-66 225-271 (272)
163 PF06107 DUF951: Bacterial pro 35.9 12 0.00025 20.1 -0.1 14 60-73 34-47 (57)
164 PF14714 KH_dom-like: KH-domai 31.3 1E+02 0.0022 17.2 3.4 32 21-52 33-64 (80)
165 COG0693 ThiJ Putative intracel 31.2 73 0.0016 20.1 3.1 30 54-84 66-97 (188)
166 COG4813 ThuA Trehalose utiliza 29.4 1.4E+02 0.0031 20.2 4.2 49 18-67 55-105 (261)
167 PF12740 Chlorophyllase2: Chlo 29.1 1.1E+02 0.0023 21.3 3.7 46 27-72 155-211 (259)
168 TIGR01269 Tyr_3_monoox tyrosin 28.2 26 0.00056 26.3 0.6 18 63-81 293-310 (457)
169 PRK14056 phenylalanine 4-monoo 26.5 28 0.00061 26.9 0.6 19 63-82 125-143 (578)
170 TIGR01268 Phe4hydrox_tetr phen 26.4 29 0.00062 25.9 0.6 18 63-81 272-289 (436)
171 TIGR01270 Trp_5_monoox tryptop 26.2 29 0.00063 26.1 0.6 18 63-81 299-316 (464)
172 KOG1579 Homocysteine S-methylt 25.5 1.4E+02 0.0031 21.4 3.9 41 29-70 225-265 (317)
173 cd08663 DAP_dppA_1 Peptidase M 23.8 2.6E+02 0.0056 19.5 7.0 58 22-85 143-202 (266)
174 PRK04940 hypothetical protein; 23.7 2.2E+02 0.0048 18.6 6.8 52 28-84 126-178 (180)
175 PF01341 Glyco_hydro_6: Glycos 23.5 65 0.0014 22.8 1.9 26 57-82 157-187 (298)
176 cd08770 DAP_dppA_3 Peptidase M 23.5 2.6E+02 0.0057 19.4 6.8 58 22-85 143-201 (263)
177 PF10932 DUF2783: Protein of u 22.9 1E+02 0.0022 16.7 2.1 17 66-82 4-20 (60)
178 PRK15450 signal transduction p 22.5 1E+02 0.0022 17.7 2.2 33 34-67 41-73 (85)
179 COG4553 DepA Poly-beta-hydroxy 22.4 2.7E+02 0.0059 20.4 4.8 73 14-86 327-407 (415)
180 TIGR03123 one_C_unchar_1 proba 22.3 1.5E+02 0.0034 21.1 3.6 21 66-86 29-49 (318)
181 PF08257 Sulfakinin: Sulfakini 21.5 47 0.001 11.0 0.5 6 62-67 3-8 (9)
182 cd03148 GATase1_EcHsp31_like T 21.3 1.6E+02 0.0035 19.7 3.5 30 54-84 96-127 (232)
183 PRK09375 quinolinate synthetas 20.6 1.6E+02 0.0035 21.0 3.4 47 29-80 243-291 (319)
No 1
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=99.65 E-value=9.7e-16 Score=104.06 Aligned_cols=81 Identities=30% Similarity=0.413 Sum_probs=67.3
Q ss_pred CcCCCccccccccccCc-ccccccCCcceEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCccCCcChHHHHHHHH
Q 034686 2 LLRPGSMFIDNLSKASK-FSDEGYGSVKRVYLVCEEDIGLPKHFQHWMIQNYPVNEVMEIKGGDHMAMLSEPQKLCDCLS 80 (87)
Q Consensus 2 ~lrp~~~~~~~~~~~~~-~~~~~~~~~P~~~i~g~~D~~~p~~~~~~~~~~~~~~~~~~l~~aGH~p~l~~p~~~~~~l~ 80 (87)
.++|+|.. .+.+... ....+|.++|++||+|++|.++|++.++.|++..++.+++.++ +||+||+|+|++|++.|.
T Consensus 188 ~~~~~~~~--~~~~~~~~~~~~~~~~vP~l~I~g~~D~~ip~~~~~~m~~~~~~~~~~~l~-~gH~p~ls~P~~~~~~i~ 264 (273)
T PLN02211 188 LLRPGPIL--ALRSARFEEETGDIDKVPRVYIKTLHDHVVKPEQQEAMIKRWPPSQVYELE-SDHSPFFSTPFLLFGLLI 264 (273)
T ss_pred hcCCcCcc--ccccccccccccccCccceEEEEeCCCCCCCHHHHHHHHHhCCccEEEEEC-CCCCccccCHHHHHHHHH
Confidence 46777765 4444332 1234677899999999999999999999999999888999997 999999999999999999
Q ss_pred HHHHH
Q 034686 81 QISLK 85 (87)
Q Consensus 81 ~~~~~ 85 (87)
++++.
T Consensus 265 ~~a~~ 269 (273)
T PLN02211 265 KAAAS 269 (273)
T ss_pred HHHHH
Confidence 98875
No 2
>PLN02965 Probable pheophorbidase
Probab=99.59 E-value=9.7e-15 Score=97.42 Aligned_cols=63 Identities=27% Similarity=0.358 Sum_probs=59.5
Q ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCccCCcChHHHHHHHHHHHHHhC
Q 034686 25 GSVKRVYLVCEEDIGLPKHFQHWMIQNYPVNEVMEIKGGDHMAMLSEPQKLCDCLSQISLKYA 87 (87)
Q Consensus 25 ~~~P~~~i~g~~D~~~p~~~~~~~~~~~~~~~~~~l~~aGH~p~l~~p~~~~~~l~~~~~~~~ 87 (87)
.++|+++|+|++|.++|++.++.|++..++.++++++||||++++|+|++|++.|.++++..|
T Consensus 192 i~vP~lvi~g~~D~~~~~~~~~~~~~~~~~a~~~~i~~~GH~~~~e~p~~v~~~l~~~~~~~~ 254 (255)
T PLN02965 192 EKVPRVYIKTAKDNLFDPVRQDVMVENWPPAQTYVLEDSDHSAFFSVPTTLFQYLLQAVSSLQ 254 (255)
T ss_pred CCCCEEEEEcCCCCCCCHHHHHHHHHhCCcceEEEecCCCCchhhcCHHHHHHHHHHHHHHhc
Confidence 569999999999999999999999999999999999999999999999999999999998764
No 3
>PRK10349 carboxylesterase BioH; Provisional
Probab=99.37 E-value=2.9e-12 Score=85.09 Aligned_cols=60 Identities=18% Similarity=0.270 Sum_probs=55.9
Q ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCccCCcChHHHHHHHHHHHHH
Q 034686 26 SVKRVYLVCEEDIGLPKHFQHWMIQNYPVNEVMEIKGGDHMAMLSEPQKLCDCLSQISLK 85 (87)
Q Consensus 26 ~~P~~~i~g~~D~~~p~~~~~~~~~~~~~~~~~~l~~aGH~p~l~~p~~~~~~l~~~~~~ 85 (87)
++|+++|+|++|.++|.+..+.+.+..++.++.+++++||++++++|++|++.|.+|-++
T Consensus 196 ~~P~lii~G~~D~~~~~~~~~~~~~~i~~~~~~~i~~~gH~~~~e~p~~f~~~l~~~~~~ 255 (256)
T PRK10349 196 SMPFLRLYGYLDGLVPRKVVPMLDKLWPHSESYIFAKAAHAPFISHPAEFCHLLVALKQR 255 (256)
T ss_pred CCCeEEEecCCCccCCHHHHHHHHHhCCCCeEEEeCCCCCCccccCHHHHHHHHHHHhcc
Confidence 489999999999999999999998989999999999999999999999999999988653
No 4
>KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.36 E-value=3.5e-12 Score=89.22 Aligned_cols=63 Identities=17% Similarity=0.305 Sum_probs=58.7
Q ss_pred cCCcceEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCccCCcChHHHHHHHHHHHHHh
Q 034686 24 YGSVKRVYLVCEEDIGLPKHFQHWMIQNYPVNEVMEIKGGDHMAMLSEPQKLCDCLSQISLKY 86 (87)
Q Consensus 24 ~~~~P~~~i~g~~D~~~p~~~~~~~~~~~~~~~~~~l~~aGH~p~l~~p~~~~~~l~~~~~~~ 86 (87)
..++|+++|||++|..+|.+....+.+..++.++++++||||.|++++|+++++.|..|++..
T Consensus 262 i~~~pvlii~G~~D~~~p~~~~~~~~~~~pn~~~~~I~~~gH~~h~e~Pe~~~~~i~~Fi~~~ 324 (326)
T KOG1454|consen 262 IWKCPVLIIWGDKDQIVPLELAEELKKKLPNAELVEIPGAGHLPHLERPEEVAALLRSFIARL 324 (326)
T ss_pred ccCCceEEEEcCcCCccCHHHHHHHHhhCCCceEEEeCCCCcccccCCHHHHHHHHHHHHHHh
Confidence 344899999999999999999999999999999999999999999999999999999998764
No 5
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=99.33 E-value=6.7e-12 Score=80.67 Aligned_cols=58 Identities=21% Similarity=0.227 Sum_probs=54.4
Q ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCccCCcChHHHHHHHHHHH
Q 034686 26 SVKRVYLVCEEDIGLPKHFQHWMIQNYPVNEVMEIKGGDHMAMLSEPQKLCDCLSQIS 83 (87)
Q Consensus 26 ~~P~~~i~g~~D~~~p~~~~~~~~~~~~~~~~~~l~~aGH~p~l~~p~~~~~~l~~~~ 83 (87)
++|+++|+|++|.++|.+..+.+.+..++.++..++++||++++++|+++++.|.+|+
T Consensus 188 ~~Pvlii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~fi 245 (245)
T TIGR01738 188 SVPFLRLYGYLDGLVPAKVVPYLDKLAPHSELYIFAKAAHAPFLSHAEAFCALLVAFK 245 (245)
T ss_pred CCCEEEEeecCCcccCHHHHHHHHHhCCCCeEEEeCCCCCCccccCHHHHHHHHHhhC
Confidence 4899999999999999999998988899999999999999999999999999999874
No 6
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=99.32 E-value=6.5e-12 Score=84.00 Aligned_cols=59 Identities=12% Similarity=0.070 Sum_probs=55.9
Q ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCccCCcChHHHHHHHHHHHH
Q 034686 26 SVKRVYLVCEEDIGLPKHFQHWMIQNYPVNEVMEIKGGDHMAMLSEPQKLCDCLSQISL 84 (87)
Q Consensus 26 ~~P~~~i~g~~D~~~p~~~~~~~~~~~~~~~~~~l~~aGH~p~l~~p~~~~~~l~~~~~ 84 (87)
++|+++|+|++|.++|.+..+.+.+..++.+++.++++||++++++|++|++.|.+|++
T Consensus 223 ~~Pvlli~G~~D~~v~~~~~~~~~~~~~~~~~~~i~~agH~~~~e~p~~~~~~i~~fl~ 281 (282)
T TIGR03343 223 KAKTLVTWGRDDRFVPLDHGLKLLWNMPDAQLHVFSRCGHWAQWEHADAFNRLVIDFLR 281 (282)
T ss_pred CCCEEEEEccCCCcCCchhHHHHHHhCCCCEEEEeCCCCcCCcccCHHHHHHHHHHHhh
Confidence 48999999999999999999999999999999999999999999999999999999975
No 7
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=99.32 E-value=6.3e-12 Score=85.15 Aligned_cols=60 Identities=12% Similarity=0.085 Sum_probs=55.3
Q ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCccCCcChHHHHHHHHHHHHH
Q 034686 26 SVKRVYLVCEEDIGLPKHFQHWMIQNYPVNEVMEIKGGDHMAMLSEPQKLCDCLSQISLK 85 (87)
Q Consensus 26 ~~P~~~i~g~~D~~~p~~~~~~~~~~~~~~~~~~l~~aGH~p~l~~p~~~~~~l~~~~~~ 85 (87)
++|+++|+|++|..+|.+.++.+.+..+..++++++|+||++++|+|+++++.|.+|++.
T Consensus 234 ~~P~lvi~G~~D~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~ 293 (294)
T PLN02824 234 KCPVLIAWGEKDPWEPVELGRAYANFDAVEDFIVLPGVGHCPQDEAPELVNPLIESFVAR 293 (294)
T ss_pred CCCeEEEEecCCCCCChHHHHHHHhcCCccceEEeCCCCCChhhhCHHHHHHHHHHHHhc
Confidence 489999999999999999998887777778999999999999999999999999999875
No 8
>PRK03204 haloalkane dehalogenase; Provisional
Probab=99.30 E-value=8.6e-12 Score=84.93 Aligned_cols=59 Identities=8% Similarity=0.195 Sum_probs=53.2
Q ss_pred CcceEEEEeCCCCCCCH-HHHHHHHHhCCCCcEEEecCCCCccCCcChHHHHHHHHHHHH
Q 034686 26 SVKRVYLVCEEDIGLPK-HFQHWMIQNYPVNEVMEIKGGDHMAMLSEPQKLCDCLSQISL 84 (87)
Q Consensus 26 ~~P~~~i~g~~D~~~p~-~~~~~~~~~~~~~~~~~l~~aGH~p~l~~p~~~~~~l~~~~~ 84 (87)
.+|+++|+|++|.++++ ...+.+.+..++.++++++++||++++++|+++++.|.+|++
T Consensus 227 ~~PtliI~G~~D~~~~~~~~~~~~~~~ip~~~~~~i~~aGH~~~~e~Pe~~~~~i~~~~~ 286 (286)
T PRK03204 227 TKPTLLVWGMKDVAFRPKTILPRLRATFPDHVLVELPNAKHFIQEDAPDRIAAAIIERFG 286 (286)
T ss_pred CCCeEEEecCCCcccCcHHHHHHHHHhcCCCeEEEcCCCcccccccCHHHHHHHHHHhcC
Confidence 69999999999998854 456788888999999999999999999999999999998863
No 9
>PRK07581 hypothetical protein; Validated
Probab=99.27 E-value=2.7e-11 Score=83.83 Aligned_cols=61 Identities=13% Similarity=0.074 Sum_probs=57.7
Q ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecC-CCCccCCcChHHHHHHHHHHHHHh
Q 034686 26 SVKRVYLVCEEDIGLPKHFQHWMIQNYPVNEVMEIKG-GDHMAMLSEPQKLCDCLSQISLKY 86 (87)
Q Consensus 26 ~~P~~~i~g~~D~~~p~~~~~~~~~~~~~~~~~~l~~-aGH~p~l~~p~~~~~~l~~~~~~~ 86 (87)
++|+++|+|++|.++|++..+.+++..++.+++++++ +||++++++|+++.+.|.+|+++|
T Consensus 275 ~~PtLvI~G~~D~~~p~~~~~~l~~~ip~a~l~~i~~~~GH~~~~~~~~~~~~~~~~~~~~~ 336 (339)
T PRK07581 275 TAKTFVMPISTDLYFPPEDCEAEAALIPNAELRPIESIWGHLAGFGQNPADIAFIDAALKEL 336 (339)
T ss_pred CCCEEEEEeCCCCCCCHHHHHHHHHhCCCCeEEEeCCCCCccccccCcHHHHHHHHHHHHHH
Confidence 4899999999999999999999999899999999998 999999999999999999999986
No 10
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=99.26 E-value=1.7e-11 Score=86.09 Aligned_cols=61 Identities=15% Similarity=0.073 Sum_probs=53.1
Q ss_pred CcceEEEEeCCCCCCCHHH-----HHHHHHhCCCCcEEEecCCCCccCCcChHHHHHHHHHHHHHh
Q 034686 26 SVKRVYLVCEEDIGLPKHF-----QHWMIQNYPVNEVMEIKGGDHMAMLSEPQKLCDCLSQISLKY 86 (87)
Q Consensus 26 ~~P~~~i~g~~D~~~p~~~-----~~~~~~~~~~~~~~~l~~aGH~p~l~~p~~~~~~l~~~~~~~ 86 (87)
++|+++|+|++|.++|.+. .+.+.+..++.++.+++|+||++++|+|+++++.|.+|+...
T Consensus 292 ~~PtLii~G~~D~~~p~~~~~~~~~~~l~~~ip~~~l~~i~~aGH~~~~E~Pe~~~~~I~~FL~~~ 357 (360)
T PLN02679 292 SLPILVLWGDQDPFTPLDGPVGKYFSSLPSQLPNVTLYVLEGVGHCPHDDRPDLVHEKLLPWLAQL 357 (360)
T ss_pred CCCEEEEEeCCCCCcCchhhHHHHHHhhhccCCceEEEEcCCCCCCccccCHHHHHHHHHHHHHhc
Confidence 4899999999999998763 244666678889999999999999999999999999998764
No 11
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=99.25 E-value=3.8e-11 Score=80.81 Aligned_cols=60 Identities=12% Similarity=0.174 Sum_probs=55.8
Q ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCccCCcChHHHHHHHHHHHHHh
Q 034686 26 SVKRVYLVCEEDIGLPKHFQHWMIQNYPVNEVMEIKGGDHMAMLSEPQKLCDCLSQISLKY 86 (87)
Q Consensus 26 ~~P~~~i~g~~D~~~p~~~~~~~~~~~~~~~~~~l~~aGH~p~l~~p~~~~~~l~~~~~~~ 86 (87)
++|+++|+|++|.++|++....+.+..++.++++++ +||++++++|+++++.|.+|+...
T Consensus 207 ~~P~lii~G~~D~~v~~~~~~~l~~~~~~~~~~~i~-~gH~~~~e~p~~~~~~i~~fl~~~ 266 (276)
T TIGR02240 207 QQPTLVLAGDDDPIIPLINMRLLAWRIPNAELHIID-DGHLFLITRAEAVAPIIMKFLAEE 266 (276)
T ss_pred CCCEEEEEeCCCCcCCHHHHHHHHHhCCCCEEEEEc-CCCchhhccHHHHHHHHHHHHHHh
Confidence 389999999999999999999999999999999998 699999999999999999998764
No 12
>PRK03592 haloalkane dehalogenase; Provisional
Probab=99.24 E-value=1.9e-11 Score=82.82 Aligned_cols=61 Identities=15% Similarity=0.206 Sum_probs=51.6
Q ss_pred CcceEEEEeCCCCCCCHH-HHHHHHHhCCCCcEEEecCCCCccCCcChHHHHHHHHHHHHHh
Q 034686 26 SVKRVYLVCEEDIGLPKH-FQHWMIQNYPVNEVMEIKGGDHMAMLSEPQKLCDCLSQISLKY 86 (87)
Q Consensus 26 ~~P~~~i~g~~D~~~p~~-~~~~~~~~~~~~~~~~l~~aGH~p~l~~p~~~~~~l~~~~~~~ 86 (87)
++|+++|+|++|.++++. ..+.+.+..++.++.+++++||++++++|+++++.|.+|+++.
T Consensus 228 ~~P~lii~G~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~v~~~i~~fl~~~ 289 (295)
T PRK03592 228 DVPKLLINAEPGAILTTGAIRDWCRSWPNQLEITVFGAGLHFAQEDSPEEIGAAIAAWLRRL 289 (295)
T ss_pred CCCeEEEeccCCcccCcHHHHHHHHHhhhhcceeeccCcchhhhhcCHHHHHHHHHHHHHHh
Confidence 589999999999999544 4444445567789999999999999999999999999998764
No 13
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=99.22 E-value=5.4e-11 Score=86.98 Aligned_cols=60 Identities=15% Similarity=0.192 Sum_probs=56.5
Q ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCccCC-cChHHHHHHHHHHHHH
Q 034686 26 SVKRVYLVCEEDIGLPKHFQHWMIQNYPVNEVMEIKGGDHMAML-SEPQKLCDCLSQISLK 85 (87)
Q Consensus 26 ~~P~~~i~g~~D~~~p~~~~~~~~~~~~~~~~~~l~~aGH~p~l-~~p~~~~~~l~~~~~~ 85 (87)
++|+++|+|++|.++|++..+.|++..|+.++++++|+||++++ ++|+++++.|.+|.+.
T Consensus 418 ~vPtLII~Ge~D~ivP~~~~~~la~~iP~a~l~vI~~aGH~~~v~e~p~~fa~~L~~F~~~ 478 (481)
T PLN03087 418 KCDVAIFHGGDDELIPVECSYAVKAKVPRARVKVIDDKDHITIVVGRQKEFARELEEIWRR 478 (481)
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHhCCCCEEEEeCCCCCcchhhcCHHHHHHHHHHHhhc
Confidence 48999999999999999999999999999999999999999996 9999999999998754
No 14
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=99.20 E-value=4.1e-11 Score=83.40 Aligned_cols=60 Identities=18% Similarity=0.163 Sum_probs=54.8
Q ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhC-CCCcEEEecC-CCCccCCcChHHHHHHHHHHHHH
Q 034686 26 SVKRVYLVCEEDIGLPKHFQHWMIQNY-PVNEVMEIKG-GDHMAMLSEPQKLCDCLSQISLK 85 (87)
Q Consensus 26 ~~P~~~i~g~~D~~~p~~~~~~~~~~~-~~~~~~~l~~-aGH~p~l~~p~~~~~~l~~~~~~ 85 (87)
++|+++|+|++|.++|.+..+.+.+.. ++.+++++++ +||++++|+|++|++.|.+|++.
T Consensus 277 ~~PtLvi~G~~D~~~p~~~~~~~~~~i~p~a~l~~i~~~aGH~~~lE~Pe~~~~~l~~FL~~ 338 (343)
T PRK08775 277 RVPTVVVAVEGDRLVPLADLVELAEGLGPRGSLRVLRSPYGHDAFLKETDRIDAILTTALRS 338 (343)
T ss_pred CCCeEEEEeCCCEeeCHHHHHHHHHHcCCCCeEEEEeCCccHHHHhcCHHHHHHHHHHHHHh
Confidence 489999999999999999888888887 6889999984 99999999999999999999875
No 15
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=99.19 E-value=1e-10 Score=77.52 Aligned_cols=59 Identities=15% Similarity=0.244 Sum_probs=55.0
Q ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCccCCcChHHHHHHHHHHHH
Q 034686 26 SVKRVYLVCEEDIGLPKHFQHWMIQNYPVNEVMEIKGGDHMAMLSEPQKLCDCLSQISL 84 (87)
Q Consensus 26 ~~P~~~i~g~~D~~~p~~~~~~~~~~~~~~~~~~l~~aGH~p~l~~p~~~~~~l~~~~~ 84 (87)
++|+++|+|++|.++|.+..+.+.+..++.++..++|+||++++++|+++++.|.+|++
T Consensus 220 ~~P~lii~g~~D~~vp~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~f~~ 278 (278)
T TIGR03056 220 TIPLHLIAGEEDKAVPPDESKRAATRVPTATLHVVPGGGHLVHEEQADGVVGLILQAAE 278 (278)
T ss_pred CCCEEEEEeCCCcccCHHHHHHHHHhccCCeEEEECCCCCcccccCHHHHHHHHHHHhC
Confidence 37999999999999999999989888898899999999999999999999999999863
No 16
>PRK10673 acyl-CoA esterase; Provisional
Probab=99.18 E-value=1.3e-10 Score=76.62 Aligned_cols=60 Identities=8% Similarity=0.210 Sum_probs=56.4
Q ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCccCCcChHHHHHHHHHHHHH
Q 034686 26 SVKRVYLVCEEDIGLPKHFQHWMIQNYPVNEVMEIKGGDHMAMLSEPQKLCDCLSQISLK 85 (87)
Q Consensus 26 ~~P~~~i~g~~D~~~p~~~~~~~~~~~~~~~~~~l~~aGH~p~l~~p~~~~~~l~~~~~~ 85 (87)
++|+++|+|++|..++.+.++.+++..++.++.+++|+||++++++|+++++.|.+|++.
T Consensus 195 ~~P~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~p~~~~~~l~~fl~~ 254 (255)
T PRK10673 195 PHPALFIRGGNSPYVTEAYRDDLLAQFPQARAHVIAGAGHWVHAEKPDAVLRAIRRYLND 254 (255)
T ss_pred CCCeEEEECCCCCCCCHHHHHHHHHhCCCcEEEEeCCCCCeeeccCHHHHHHHHHHHHhc
Confidence 379999999999999999999999999999999999999999999999999999999864
No 17
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=99.18 E-value=1.3e-10 Score=75.55 Aligned_cols=59 Identities=12% Similarity=0.205 Sum_probs=55.2
Q ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCccCCcChHHHHHHHHHHHH
Q 034686 26 SVKRVYLVCEEDIGLPKHFQHWMIQNYPVNEVMEIKGGDHMAMLSEPQKLCDCLSQISL 84 (87)
Q Consensus 26 ~~P~~~i~g~~D~~~p~~~~~~~~~~~~~~~~~~l~~aGH~p~l~~p~~~~~~l~~~~~ 84 (87)
++|+++++|++|..+|.+....+.+..++.+++.++++||++++++|+++++.|.+|++
T Consensus 198 ~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~i~~fl~ 256 (257)
T TIGR03611 198 QHPVLLIANRDDMLVPYTQSLRLAAALPNAQLKLLPYGGHASNVTDPETFNRALLDFLK 256 (257)
T ss_pred CccEEEEecCcCcccCHHHHHHHHHhcCCceEEEECCCCCCccccCHHHHHHHHHHHhc
Confidence 48999999999999999999889998888899999999999999999999999999875
No 18
>PRK00870 haloalkane dehalogenase; Provisional
Probab=99.17 E-value=6.2e-11 Score=80.77 Aligned_cols=60 Identities=12% Similarity=0.037 Sum_probs=53.2
Q ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhCCCCc---EEEecCCCCccCCcChHHHHHHHHHHHHHh
Q 034686 26 SVKRVYLVCEEDIGLPKHFQHWMIQNYPVNE---VMEIKGGDHMAMLSEPQKLCDCLSQISLKY 86 (87)
Q Consensus 26 ~~P~~~i~g~~D~~~p~~~~~~~~~~~~~~~---~~~l~~aGH~p~l~~p~~~~~~l~~~~~~~ 86 (87)
++|+++|+|++|.++|... +.+.+..++.+ +.+++|+||++++++|+++++.|.+|++..
T Consensus 239 ~~P~lii~G~~D~~~~~~~-~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~l~~fl~~~ 301 (302)
T PRK00870 239 DKPFLTAFSDSDPITGGGD-AILQKRIPGAAGQPHPTIKGAGHFLQEDSGEELAEAVLEFIRAT 301 (302)
T ss_pred CCceEEEecCCCCcccCch-HHHHhhcccccccceeeecCCCccchhhChHHHHHHHHHHHhcC
Confidence 4899999999999999766 77888888655 788999999999999999999999998764
No 19
>PLN02578 hydrolase
Probab=99.15 E-value=2.2e-10 Score=80.25 Aligned_cols=58 Identities=14% Similarity=0.104 Sum_probs=53.9
Q ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCccCCcChHHHHHHHHHHHH
Q 034686 26 SVKRVYLVCEEDIGLPKHFQHWMIQNYPVNEVMEIKGGDHMAMLSEPQKLCDCLSQISL 84 (87)
Q Consensus 26 ~~P~~~i~g~~D~~~p~~~~~~~~~~~~~~~~~~l~~aGH~p~l~~p~~~~~~l~~~~~ 84 (87)
++|+++|+|++|..+|.+..+.+.+..++.++++++ +||++++++|+++++.|.+|++
T Consensus 296 ~~PvLiI~G~~D~~v~~~~~~~l~~~~p~a~l~~i~-~GH~~~~e~p~~~~~~I~~fl~ 353 (354)
T PLN02578 296 SCPLLLLWGDLDPWVGPAKAEKIKAFYPDTTLVNLQ-AGHCPHDEVPEQVNKALLEWLS 353 (354)
T ss_pred CCCEEEEEeCCCCCCCHHHHHHHHHhCCCCEEEEeC-CCCCccccCHHHHHHHHHHHHh
Confidence 489999999999999999999899989998988885 9999999999999999999975
No 20
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=99.14 E-value=7.6e-11 Score=82.29 Aligned_cols=58 Identities=12% Similarity=0.058 Sum_probs=52.3
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHHhCCCCcEE-----EecCCCCccCCcChHHHHHHHHHHHH
Q 034686 27 VKRVYLVCEEDIGLPKHFQHWMIQNYPVNEVM-----EIKGGDHMAMLSEPQKLCDCLSQISL 84 (87)
Q Consensus 27 ~P~~~i~g~~D~~~p~~~~~~~~~~~~~~~~~-----~l~~aGH~p~l~~p~~~~~~l~~~~~ 84 (87)
+|+++|+|++|.++|++..+.+++..++.++. +++++||++|+++|+++++.|.+|++
T Consensus 289 ~P~Lvi~G~~D~~~p~~~~~~~a~~i~~~~~~v~~~~i~~~~GH~~~le~p~~~~~~l~~FL~ 351 (351)
T TIGR01392 289 APFLVVSITSDWLFPPAESRELAKALPAAGLRVTYVEIESPYGHDAFLVETDQVEELIRGFLR 351 (351)
T ss_pred CCEEEEEeCCccccCHHHHHHHHHHHhhcCCceEEEEeCCCCCcchhhcCHHHHHHHHHHHhC
Confidence 79999999999999999999999998876654 45689999999999999999999874
No 21
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=99.14 E-value=1.2e-10 Score=82.28 Aligned_cols=59 Identities=12% Similarity=0.086 Sum_probs=53.9
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHHhCCCC----cEEEec-CCCCccCCcChHHHHHHHHHHHHH
Q 034686 27 VKRVYLVCEEDIGLPKHFQHWMIQNYPVN----EVMEIK-GGDHMAMLSEPQKLCDCLSQISLK 85 (87)
Q Consensus 27 ~P~~~i~g~~D~~~p~~~~~~~~~~~~~~----~~~~l~-~aGH~p~l~~p~~~~~~l~~~~~~ 85 (87)
+|+++|+|++|.++|++..+.+++..++. ++.+++ ++||++++++|+++++.|.+|+++
T Consensus 310 ~PtLvI~G~~D~~~p~~~~~~la~~i~~a~~~~~l~~i~~~~GH~~~le~p~~~~~~L~~FL~~ 373 (379)
T PRK00175 310 ARFLVVSFTSDWLFPPARSREIVDALLAAGADVSYAEIDSPYGHDAFLLDDPRYGRLVRAFLER 373 (379)
T ss_pred CCEEEEEECCccccCHHHHHHHHHHHHhcCCCeEEEEeCCCCCchhHhcCHHHHHHHHHHHHHh
Confidence 79999999999999999999999988875 666775 899999999999999999999875
No 22
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=99.13 E-value=3.2e-10 Score=72.94 Aligned_cols=58 Identities=17% Similarity=0.335 Sum_probs=54.1
Q ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCccCCcChHHHHHHHHHHH
Q 034686 26 SVKRVYLVCEEDIGLPKHFQHWMIQNYPVNEVMEIKGGDHMAMLSEPQKLCDCLSQIS 83 (87)
Q Consensus 26 ~~P~~~i~g~~D~~~p~~~~~~~~~~~~~~~~~~l~~aGH~p~l~~p~~~~~~l~~~~ 83 (87)
++|+++|+|++|.++|.+....+.+..++.++..++++||++++++|+++++.+.+|+
T Consensus 193 ~~Pvlii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~p~~~~~~i~~fl 250 (251)
T TIGR02427 193 AVPTLCIAGDQDGSTPPELVREIADLVPGARFAEIRGAGHIPCVEQPEAFNAALRDFL 250 (251)
T ss_pred CCCeEEEEeccCCcCChHHHHHHHHhCCCceEEEECCCCCcccccChHHHHHHHHHHh
Confidence 3899999999999999998888888888889999999999999999999999999886
No 23
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=99.10 E-value=4e-10 Score=80.37 Aligned_cols=58 Identities=12% Similarity=-0.045 Sum_probs=53.1
Q ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCccCCcChHHHHHHHHHHHH
Q 034686 26 SVKRVYLVCEEDIGLPKHFQHWMIQNYPVNEVMEIKGGDHMAMLSEPQKLCDCLSQISL 84 (87)
Q Consensus 26 ~~P~~~i~g~~D~~~p~~~~~~~~~~~~~~~~~~l~~aGH~p~l~~p~~~~~~l~~~~~ 84 (87)
++|+++|||++|..++.+..+.+++. .+.++.++++|||++++++|+++++.|.+|++
T Consensus 325 ~vPvLiI~G~~D~~v~~~~~~~~a~~-~~a~l~vIp~aGH~~~~E~Pe~v~~~I~~Fl~ 382 (383)
T PLN03084 325 KTPITVCWGLRDRWLNYDGVEDFCKS-SQHKLIELPMAGHHVQEDCGEELGGIISGILS 382 (383)
T ss_pred CCCEEEEeeCCCCCcCHHHHHHHHHh-cCCeEEEECCCCCCcchhCHHHHHHHHHHHhh
Confidence 58999999999999999988887776 57789999999999999999999999999875
No 24
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=99.10 E-value=4.7e-10 Score=73.74 Aligned_cols=58 Identities=21% Similarity=0.216 Sum_probs=51.5
Q ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCccCCcChHHHHHHHHHHHH
Q 034686 26 SVKRVYLVCEEDIGLPKHFQHWMIQNYPVNEVMEIKGGDHMAMLSEPQKLCDCLSQISL 84 (87)
Q Consensus 26 ~~P~~~i~g~~D~~~p~~~~~~~~~~~~~~~~~~l~~aGH~p~l~~p~~~~~~l~~~~~ 84 (87)
++|+++++|++|.+ ++...+.+++..++.++++++++||++++++|+++++.|.+|++
T Consensus 231 ~~P~lii~G~~D~~-~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~fl~ 288 (288)
T TIGR01250 231 KVPTLLTVGEFDTM-TPEAAREMQELIAGSRLVVFPDGSHMTMIEDPEVYFKLLSDFIR 288 (288)
T ss_pred CCCEEEEecCCCcc-CHHHHHHHHHhccCCeEEEeCCCCCCcccCCHHHHHHHHHHHhC
Confidence 48999999999985 56677778888888899999999999999999999999999863
No 25
>PRK06489 hypothetical protein; Provisional
Probab=99.09 E-value=4.8e-10 Score=78.59 Aligned_cols=60 Identities=8% Similarity=0.046 Sum_probs=54.1
Q ss_pred CcceEEEEeCCCCCCCHHHH--HHHHHhCCCCcEEEecCC----CCccCCcChHHHHHHHHHHHHHh
Q 034686 26 SVKRVYLVCEEDIGLPKHFQ--HWMIQNYPVNEVMEIKGG----DHMAMLSEPQKLCDCLSQISLKY 86 (87)
Q Consensus 26 ~~P~~~i~g~~D~~~p~~~~--~~~~~~~~~~~~~~l~~a----GH~p~l~~p~~~~~~l~~~~~~~ 86 (87)
++|+++|+|++|.++|.+.. +.+++..|+.+++++++| ||+++ ++|+++++.|.+|++..
T Consensus 292 ~~PvLvI~G~~D~~~p~~~~~~~~la~~ip~a~l~~i~~a~~~~GH~~~-e~P~~~~~~i~~FL~~~ 357 (360)
T PRK06489 292 KAPVLAINSADDERNPPETGVMEAALKRVKHGRLVLIPASPETRGHGTT-GSAKFWKAYLAEFLAQV 357 (360)
T ss_pred CCCEEEEecCCCcccChhhHHHHHHHHhCcCCeEEEECCCCCCCCcccc-cCHHHHHHHHHHHHHhc
Confidence 38999999999999998875 778899999999999985 99998 89999999999998753
No 26
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=99.05 E-value=3.1e-10 Score=71.73 Aligned_cols=53 Identities=21% Similarity=0.380 Sum_probs=49.9
Q ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCccCCcChHHHHHH
Q 034686 26 SVKRVYLVCEEDIGLPKHFQHWMIQNYPVNEVMEIKGGDHMAMLSEPQKLCDC 78 (87)
Q Consensus 26 ~~P~~~i~g~~D~~~p~~~~~~~~~~~~~~~~~~l~~aGH~p~l~~p~~~~~~ 78 (87)
++|+++|+|++|..++.+..+.+.+..++.++..++|+||++++++|+++++.
T Consensus 176 ~~pvl~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~p~~~~~a 228 (228)
T PF12697_consen 176 KVPVLVIHGEDDPIVPPESAEELADKLPNAELVVIPGAGHFLFLEQPDEVAEA 228 (228)
T ss_dssp SSEEEEEEETTSSSSHHHHHHHHHHHSTTEEEEEETTSSSTHHHHSHHHHHHH
T ss_pred CCCeEEeecCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCccHHHCHHHHhcC
Confidence 59999999999999999999999988999999999999999999999999873
No 27
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=99.03 E-value=1.3e-09 Score=75.94 Aligned_cols=61 Identities=13% Similarity=0.085 Sum_probs=53.2
Q ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhC--CCCcEEEecCCCCccCCcChHH----HHHHHHHHHHHh
Q 034686 26 SVKRVYLVCEEDIGLPKHFQHWMIQNY--PVNEVMEIKGGDHMAMLSEPQK----LCDCLSQISLKY 86 (87)
Q Consensus 26 ~~P~~~i~g~~D~~~p~~~~~~~~~~~--~~~~~~~l~~aGH~p~l~~p~~----~~~~l~~~~~~~ 86 (87)
++|+++|+|++|.++|.+..+.+.+.. ++.++++++|+||++++++|++ +.+.|.+|+..+
T Consensus 279 ~~P~Lii~G~~D~vv~~~~~~~l~~~~~~~~~~l~~i~~~gH~l~~e~p~~~~~~v~~~i~~wL~~~ 345 (349)
T PLN02385 279 SLPLLILHGEADKVTDPSVSKFLYEKASSSDKKLKLYEDAYHSILEGEPDEMIFQVLDDIISWLDSH 345 (349)
T ss_pred CCCEEEEEeCCCCccChHHHHHHHHHcCCCCceEEEeCCCeeecccCCChhhHHHHHHHHHHHHHHh
Confidence 489999999999999999998888876 4578999999999999999998 777788887654
No 28
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=98.98 E-value=2.5e-09 Score=76.42 Aligned_cols=60 Identities=15% Similarity=0.213 Sum_probs=49.9
Q ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhC-CCCcEEEecCCCCccCCcChHHHHHHHHHHHHHh
Q 034686 26 SVKRVYLVCEEDIGLPKHFQHWMIQNY-PVNEVMEIKGGDHMAMLSEPQKLCDCLSQISLKY 86 (87)
Q Consensus 26 ~~P~~~i~g~~D~~~p~~~~~~~~~~~-~~~~~~~l~~aGH~p~l~~p~~~~~~l~~~~~~~ 86 (87)
++|+++|+|++|.+.+..... +.... +..+++.++|+||++++++|++|++.|.++++.|
T Consensus 325 ~vP~liI~G~~D~i~~~~~~~-~~~~~~~~~~~~~i~~aGH~~~~E~P~~f~~~l~~~~~~~ 385 (402)
T PLN02894 325 KVPTTFIYGRHDWMNYEGAVE-ARKRMKVPCEIIRVPQGGHFVFLDNPSGFHSAVLYACRKY 385 (402)
T ss_pred CCCEEEEEeCCCCCCcHHHHH-HHHHcCCCCcEEEeCCCCCeeeccCHHHHHHHHHHHHHHh
Confidence 489999999999887644444 44444 3578999999999999999999999999998876
No 29
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=98.97 E-value=2.3e-09 Score=68.59 Aligned_cols=59 Identities=19% Similarity=0.213 Sum_probs=51.1
Q ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCccCCcChHHHHHHHHHHHH
Q 034686 25 GSVKRVYLVCEEDIGLPKHFQHWMIQNYPVNEVMEIKGGDHMAMLSEPQKLCDCLSQISL 84 (87)
Q Consensus 25 ~~~P~~~i~g~~D~~~p~~~~~~~~~~~~~~~~~~l~~aGH~p~l~~p~~~~~~l~~~~~ 84 (87)
.++|+++|+|++|..++ +..+.+.+..++.++..++++||++++++|+++++.|.+|++
T Consensus 193 ~~~P~l~i~g~~D~~~~-~~~~~~~~~~~~~~~~~~~~~gH~~~~e~~~~~~~~i~~~l~ 251 (251)
T TIGR03695 193 LTIPVLYLCGEKDEKFV-QIAKEMQKLLPNLTLVIIANAGHNIHLENPEAFAKILLAFLE 251 (251)
T ss_pred CCCceEEEeeCcchHHH-HHHHHHHhcCCCCcEEEEcCCCCCcCccChHHHHHHHHHHhC
Confidence 34899999999998774 556667777888899999999999999999999999998863
No 30
>PRK06765 homoserine O-acetyltransferase; Provisional
Probab=98.95 E-value=2.9e-09 Score=76.09 Aligned_cols=60 Identities=18% Similarity=0.285 Sum_probs=53.9
Q ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhCC----CCcEEEecC-CCCccCCcChHHHHHHHHHHHHH
Q 034686 26 SVKRVYLVCEEDIGLPKHFQHWMIQNYP----VNEVMEIKG-GDHMAMLSEPQKLCDCLSQISLK 85 (87)
Q Consensus 26 ~~P~~~i~g~~D~~~p~~~~~~~~~~~~----~~~~~~l~~-aGH~p~l~~p~~~~~~l~~~~~~ 85 (87)
++|+++|+|++|.++|++..+.+++..+ +.+++++++ +||++++++|+++++.|.+|++.
T Consensus 323 ~~PtLvI~G~~D~l~p~~~~~~la~~lp~~~~~a~l~~I~s~~GH~~~le~p~~~~~~I~~FL~~ 387 (389)
T PRK06765 323 EANVLMIPCKQDLLQPPRYNYKMVDILQKQGKYAEVYEIESINGHMAGVFDIHLFEKKIYEFLNR 387 (389)
T ss_pred CCCEEEEEeCCCCCCCHHHHHHHHHHhhhcCCCeEEEEECCCCCcchhhcCHHHHHHHHHHHHcc
Confidence 4899999999999999999998888875 578888985 89999999999999999999864
No 31
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=98.90 E-value=4.7e-09 Score=68.77 Aligned_cols=54 Identities=22% Similarity=0.197 Sum_probs=45.1
Q ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCccCCcChHHHHHHHHHHHHH
Q 034686 26 SVKRVYLVCEEDIGLPKHFQHWMIQNYPVNEVMEIKGGDHMAMLSEPQKLCDCLSQISLK 85 (87)
Q Consensus 26 ~~P~~~i~g~~D~~~p~~~~~~~~~~~~~~~~~~l~~aGH~p~l~~p~~~~~~l~~~~~~ 85 (87)
++|+++|+|++|..+. .++++ .+.++.+++||||++++|+|+++++.|..|++.
T Consensus 188 ~~P~lii~G~~D~~~~-----~~~~~-~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~ 241 (242)
T PRK11126 188 TFPFYYLCGERDSKFQ-----ALAQQ-LALPLHVIPNAGHNAHRENPAAFAASLAQILRL 241 (242)
T ss_pred CCCeEEEEeCCcchHH-----HHHHH-hcCeEEEeCCCCCchhhhChHHHHHHHHHHHhh
Confidence 4899999999998652 23333 367899999999999999999999999999864
No 32
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=98.89 E-value=3.7e-09 Score=67.88 Aligned_cols=56 Identities=20% Similarity=0.323 Sum_probs=52.6
Q ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCccCCcChHHHHHHHH
Q 034686 25 GSVKRVYLVCEEDIGLPKHFQHWMIQNYPVNEVMEIKGGDHMAMLSEPQKLCDCLS 80 (87)
Q Consensus 25 ~~~P~~~i~g~~D~~~p~~~~~~~~~~~~~~~~~~l~~aGH~p~l~~p~~~~~~l~ 80 (87)
.++|+++++|++|.++|.+....+.+..|+.+.++++++||+.+++.|+++++.|.
T Consensus 174 i~~p~l~i~~~~D~~~p~~~~~~~~~~~~~~~~~~~~~~GH~~~~~~~~~~~~~i~ 229 (230)
T PF00561_consen 174 IKVPTLIIWGEDDPLVPPESSEQLAKLIPNSQLVLIEGSGHFAFLEGPDEFNEIII 229 (230)
T ss_dssp TTSEEEEEEETTCSSSHHHHHHHHHHHSTTEEEEEETTCCSTHHHHSHHHHHHHHH
T ss_pred cCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCEEEECCCCChHHHhcCHHhhhhhhc
Confidence 55999999999999999999999999999999999999999999999999999875
No 33
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=98.86 E-value=9e-09 Score=70.98 Aligned_cols=60 Identities=12% Similarity=0.086 Sum_probs=50.0
Q ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhCC--CCcEEEecCCCCccCCcChHH----HHHHHHHHHHH
Q 034686 26 SVKRVYLVCEEDIGLPKHFQHWMIQNYP--VNEVMEIKGGDHMAMLSEPQK----LCDCLSQISLK 85 (87)
Q Consensus 26 ~~P~~~i~g~~D~~~p~~~~~~~~~~~~--~~~~~~l~~aGH~p~l~~p~~----~~~~l~~~~~~ 85 (87)
++|+++|+|++|.++|.+..+.+.+..+ +.++++++|+||++++++|+. +.+.|.+|+.+
T Consensus 251 ~~PvLii~G~~D~ivp~~~~~~l~~~i~~~~~~l~~~~~a~H~~~~e~pd~~~~~~~~~i~~fl~~ 316 (330)
T PLN02298 251 SIPFIVLHGSADVVTDPDVSRALYEEAKSEDKTIKIYDGMMHSLLFGEPDENIEIVRRDILSWLNE 316 (330)
T ss_pred CCCEEEEecCCCCCCCHHHHHHHHHHhccCCceEEEcCCcEeeeecCCCHHHHHHHHHHHHHHHHH
Confidence 3899999999999999999988877764 678899999999999999976 45556666554
No 34
>KOG2382 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=98.85 E-value=7.5e-09 Score=72.20 Aligned_cols=59 Identities=17% Similarity=0.264 Sum_probs=55.9
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCccCCcChHHHHHHHHHHHHH
Q 034686 27 VKRVYLVCEEDIGLPKHFQHWMIQNYPVNEVMEIKGGDHMAMLSEPQKLCDCLSQISLK 85 (87)
Q Consensus 27 ~P~~~i~g~~D~~~p~~~~~~~~~~~~~~~~~~l~~aGH~p~l~~p~~~~~~l~~~~~~ 85 (87)
.|+++|.|.++..++.+.-..|....|..++..+++||||.|+|+|++|.+.|.+|+.+
T Consensus 254 ~pvlfi~g~~S~fv~~~~~~~~~~~fp~~e~~~ld~aGHwVh~E~P~~~~~~i~~Fl~~ 312 (315)
T KOG2382|consen 254 GPVLFIKGLQSKFVPDEHYPRMEKIFPNVEVHELDEAGHWVHLEKPEEFIESISEFLEE 312 (315)
T ss_pred cceeEEecCCCCCcChhHHHHHHHhccchheeecccCCceeecCCHHHHHHHHHHHhcc
Confidence 79999999999999999888898989999999999999999999999999999998865
No 35
>PHA02857 monoglyceride lipase; Provisional
Probab=98.84 E-value=2e-08 Score=67.30 Aligned_cols=60 Identities=8% Similarity=-0.000 Sum_probs=51.2
Q ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhC-CCCcEEEecCCCCccCCcCh---HHHHHHHHHHHHH
Q 034686 26 SVKRVYLVCEEDIGLPKHFQHWMIQNY-PVNEVMEIKGGDHMAMLSEP---QKLCDCLSQISLK 85 (87)
Q Consensus 26 ~~P~~~i~g~~D~~~p~~~~~~~~~~~-~~~~~~~l~~aGH~p~l~~p---~~~~~~l~~~~~~ 85 (87)
++|+++|+|++|.++|.+....+.+.. +..++.+++|+||+++.|++ +++.+.+.+|+..
T Consensus 209 ~~Pvliv~G~~D~i~~~~~~~~l~~~~~~~~~~~~~~~~gH~~~~e~~~~~~~~~~~~~~~l~~ 272 (276)
T PHA02857 209 KTPILILQGTNNEISDVSGAYYFMQHANCNREIKIYEGAKHHLHKETDEVKKSVMKEIETWIFN 272 (276)
T ss_pred CCCEEEEecCCCCcCChHHHHHHHHHccCCceEEEeCCCcccccCCchhHHHHHHHHHHHHHHH
Confidence 489999999999999999998888876 45788899999999999987 4577777777754
No 36
>PRK05855 short chain dehydrogenase; Validated
Probab=98.83 E-value=7.7e-09 Score=75.22 Aligned_cols=61 Identities=21% Similarity=0.144 Sum_probs=54.6
Q ss_pred cCCcceEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCccCCcChHHHHHHHHHHHHH
Q 034686 24 YGSVKRVYLVCEEDIGLPKHFQHWMIQNYPVNEVMEIKGGDHMAMLSEPQKLCDCLSQISLK 85 (87)
Q Consensus 24 ~~~~P~~~i~g~~D~~~p~~~~~~~~~~~~~~~~~~l~~aGH~p~l~~p~~~~~~l~~~~~~ 85 (87)
+.++|+++|+|++|.++|.+.++.+++..+..++++++ +||++++++|+++++.|.+|+..
T Consensus 231 ~~~~P~lii~G~~D~~v~~~~~~~~~~~~~~~~~~~~~-~gH~~~~e~p~~~~~~i~~fl~~ 291 (582)
T PRK05855 231 YTDVPVQLIVPTGDPYVRPALYDDLSRWVPRLWRREIK-AGHWLPMSHPQVLAAAVAEFVDA 291 (582)
T ss_pred CccCceEEEEeCCCcccCHHHhccccccCCcceEEEcc-CCCcchhhChhHHHHHHHHHHHh
Confidence 35699999999999999999998888777877887887 89999999999999999999875
No 37
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=98.81 E-value=9.8e-09 Score=71.18 Aligned_cols=57 Identities=16% Similarity=0.170 Sum_probs=49.2
Q ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCccCCcChHHHHHHHHHHHHH
Q 034686 26 SVKRVYLVCEEDIGLPKHFQHWMIQNYPVNEVMEIKGGDHMAMLSEPQKLCDCLSQISLK 85 (87)
Q Consensus 26 ~~P~~~i~g~~D~~~p~~~~~~~~~~~~~~~~~~l~~aGH~p~l~~p~~~~~~l~~~~~~ 85 (87)
++|+++|+|++|.++|.+..+.+ .+..+++.++|+||++++++|+++++.|.+|++.
T Consensus 314 ~~Pvlii~g~~D~~vp~~~~~~l---~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~fl~~ 370 (371)
T PRK14875 314 AIPVLVIWGEQDRIIPAAHAQGL---PDGVAVHVLPGAGHMPQMEAAADVNRLLAEFLGK 370 (371)
T ss_pred CCCEEEEEECCCCccCHHHHhhc---cCCCeEEEeCCCCCChhhhCHHHHHHHHHHHhcc
Confidence 48999999999999998765533 2357888999999999999999999999999864
No 38
>KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism]
Probab=98.77 E-value=3e-08 Score=69.32 Aligned_cols=61 Identities=16% Similarity=0.241 Sum_probs=51.1
Q ss_pred cceEEEEeCCCCCCCHHHH-HHHHHhCCCC-cEEEecCCCCccCCcChHHHHHHHHHHHHHhC
Q 034686 27 VKRVYLVCEEDIGLPKHFQ-HWMIQNYPVN-EVMEIKGGDHMAMLSEPQKLCDCLSQISLKYA 87 (87)
Q Consensus 27 ~P~~~i~g~~D~~~p~~~~-~~~~~~~~~~-~~~~l~~aGH~p~l~~p~~~~~~l~~~~~~~~ 87 (87)
+|+.+|||+.|.+.+.... ..+.+..+.. +..+++|+||+++.|+|+++.+.|.+|+++++
T Consensus 259 iPv~fi~G~~D~v~~~p~~~~~~rk~vp~l~~~vv~~~~gH~vqqe~p~~v~~~i~~f~~~~~ 321 (322)
T KOG4178|consen 259 IPVLFIWGDLDPVLPYPIFGELYRKDVPRLTERVVIEGIGHFVQQEKPQEVNQAILGFINSFS 321 (322)
T ss_pred cceEEEEecCcccccchhHHHHHHHhhccccceEEecCCcccccccCHHHHHHHHHHHHHhhc
Confidence 8999999999999987644 3344445654 67788999999999999999999999998874
No 39
>PRK10749 lysophospholipase L2; Provisional
Probab=98.75 E-value=3.1e-08 Score=68.76 Aligned_cols=60 Identities=12% Similarity=0.158 Sum_probs=49.0
Q ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhC-------CCCcEEEecCCCCccCCcCh---HHHHHHHHHHHHH
Q 034686 26 SVKRVYLVCEEDIGLPKHFQHWMIQNY-------PVNEVMEIKGGDHMAMLSEP---QKLCDCLSQISLK 85 (87)
Q Consensus 26 ~~P~~~i~g~~D~~~p~~~~~~~~~~~-------~~~~~~~l~~aGH~p~l~~p---~~~~~~l~~~~~~ 85 (87)
++|+++|+|++|.+++.+..+.+.+.. +..++++++||||+++.|.+ +++.+.|.+|+.+
T Consensus 259 ~~P~Lii~G~~D~vv~~~~~~~~~~~l~~~~~~~~~~~l~~~~gagH~~~~E~~~~r~~v~~~i~~fl~~ 328 (330)
T PRK10749 259 TTPLLLLQAEEERVVDNRMHDRFCEARTAAGHPCEGGKPLVIKGAYHEILFEKDAMRSVALNAIVDFFNR 328 (330)
T ss_pred CCCEEEEEeCCCeeeCHHHHHHHHHHHhhcCCCCCCceEEEeCCCcchhhhCCcHHHHHHHHHHHHHHhh
Confidence 489999999999999999888777654 23478999999999999987 5566667777654
No 40
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=98.74 E-value=2.7e-08 Score=81.21 Aligned_cols=59 Identities=19% Similarity=0.278 Sum_probs=50.3
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHHhCCC------------CcEEEecCCCCccCCcChHHHHHHHHHHHHHh
Q 034686 27 VKRVYLVCEEDIGLPKHFQHWMIQNYPV------------NEVMEIKGGDHMAMLSEPQKLCDCLSQISLKY 86 (87)
Q Consensus 27 ~P~~~i~g~~D~~~p~~~~~~~~~~~~~------------~~~~~l~~aGH~p~l~~p~~~~~~l~~~~~~~ 86 (87)
+|+++|+|++|..++ +....|.+..++ .+++++++|||++|+++|+++++.|.+|++..
T Consensus 1569 ~PtLlI~Ge~D~~~~-~~a~~~~~~i~~a~~~~~~~~~~~a~lvvI~~aGH~~~lE~Pe~f~~~I~~FL~~~ 1639 (1655)
T PLN02980 1569 TPLLLVVGEKDVKFK-QIAQKMYREIGKSKESGNDKGKEIIEIVEIPNCGHAVHLENPLPVIRALRKFLTRL 1639 (1655)
T ss_pred CCEEEEEECCCCccH-HHHHHHHHHccccccccccccccceEEEEECCCCCchHHHCHHHHHHHHHHHHHhc
Confidence 799999999999885 555667766654 37889999999999999999999999998753
No 41
>PLN02511 hydrolase
Probab=98.70 E-value=1.5e-08 Score=72.08 Aligned_cols=59 Identities=14% Similarity=0.114 Sum_probs=50.4
Q ss_pred cceEEEEeCCCCCCCHHHH-HHHHHhCCCCcEEEecCCCCccCCcChHH------HHHHHHHHHHH
Q 034686 27 VKRVYLVCEEDIGLPKHFQ-HWMIQNYPVNEVMEIKGGDHMAMLSEPQK------LCDCLSQISLK 85 (87)
Q Consensus 27 ~P~~~i~g~~D~~~p~~~~-~~~~~~~~~~~~~~l~~aGH~p~l~~p~~------~~~~l~~~~~~ 85 (87)
+|+++|+|++|.++|.+.. ..+++..++.++.+++++||++|+|+|+. +.+.+.+|++.
T Consensus 299 vPtLiI~g~dDpi~p~~~~~~~~~~~~p~~~l~~~~~gGH~~~~E~p~~~~~~~w~~~~i~~Fl~~ 364 (388)
T PLN02511 299 VPLLCIQAANDPIAPARGIPREDIKANPNCLLIVTPSGGHLGWVAGPEAPFGAPWTDPVVMEFLEA 364 (388)
T ss_pred CCeEEEEcCCCCcCCcccCcHhHHhcCCCEEEEECCCcceeccccCCCCCCCCccHHHHHHHHHHH
Confidence 8999999999999997755 45667788889999999999999999976 47888888765
No 42
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=98.62 E-value=2.1e-07 Score=66.75 Aligned_cols=60 Identities=12% Similarity=-0.013 Sum_probs=53.1
Q ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhCC--CCcEEEecCCCCccCCc-ChHHHHHHHHHHHHH
Q 034686 26 SVKRVYLVCEEDIGLPKHFQHWMIQNYP--VNEVMEIKGGDHMAMLS-EPQKLCDCLSQISLK 85 (87)
Q Consensus 26 ~~P~~~i~g~~D~~~p~~~~~~~~~~~~--~~~~~~l~~aGH~p~l~-~p~~~~~~l~~~~~~ 85 (87)
++|+++|+|++|.++|++..+.+.+..+ ..++..++|++|+++++ +++++.+.+.+|+..
T Consensus 324 ~vPvLIi~G~~D~vvp~~~a~~l~~~~~~~~k~l~~~~ga~H~l~~e~~~e~v~~~I~~FL~~ 386 (395)
T PLN02652 324 TVPFMVLHGTADRVTDPLASQDLYNEAASRHKDIKLYDGFLHDLLFEPEREEVGRDIIDWMEK 386 (395)
T ss_pred CCCEEEEEeCCCCCCCHHHHHHHHHhcCCCCceEEEECCCeEEeccCCCHHHHHHHHHHHHHH
Confidence 4899999999999999999988888754 36788999999999887 799999999999875
No 43
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=98.59 E-value=3.6e-07 Score=62.63 Aligned_cols=58 Identities=16% Similarity=0.217 Sum_probs=47.6
Q ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCccCCcChHHHHHHHHHHHHHh
Q 034686 26 SVKRVYLVCEEDIGLPKHFQHWMIQNYPVNEVMEIKGGDHMAMLSEPQKLCDCLSQISLKY 86 (87)
Q Consensus 26 ~~P~~~i~g~~D~~~p~~~~~~~~~~~~~~~~~~l~~aGH~p~l~~p~~~~~~l~~~~~~~ 86 (87)
++|+++|+|++|.++|.+..+.+++..++.++++++++||+++ .|+ ..+.|.+++..|
T Consensus 248 ~~P~lii~g~~D~~~p~~~~~~~~~~~~~~~~~~~~~~gH~~~--~~~-~~~~i~~~~~~~ 305 (306)
T TIGR01249 248 NIPTYIVHGRYDLCCPLQSAWALHKAFPEAELKVTNNAGHSAF--DPN-NLAALVHALETY 305 (306)
T ss_pred CCCeEEEecCCCCCCCHHHHHHHHHhCCCCEEEEECCCCCCCC--ChH-HHHHHHHHHHHh
Confidence 5899999999999999999999999999999999999999986 333 445555555543
No 44
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=98.46 E-value=1.1e-06 Score=55.51 Aligned_cols=58 Identities=19% Similarity=0.354 Sum_probs=49.2
Q ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhCCC-CcEEEecCCCCccCCcChHHHHHHHHHHH
Q 034686 26 SVKRVYLVCEEDIGLPKHFQHWMIQNYPV-NEVMEIKGGDHMAMLSEPQKLCDCLSQIS 83 (87)
Q Consensus 26 ~~P~~~i~g~~D~~~p~~~~~~~~~~~~~-~~~~~l~~aGH~p~l~~p~~~~~~l~~~~ 83 (87)
.+|+++++|++|...|......+....+. .++.+++++||++++++|+++.+.+.++.
T Consensus 221 ~~P~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~p~~~~~~i~~~~ 279 (282)
T COG0596 221 TVPTLIIHGEDDPVVPAELARRLAAALPNDARLVVIPGAGHFPHLEAPEAFAAALLAFL 279 (282)
T ss_pred CCCeEEEecCCCCcCCHHHHHHHHhhCCCCceEEEeCCCCCcchhhcHHHHHHHHHHHH
Confidence 38999999999977777666667777775 78889999999999999999999888743
No 45
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=98.29 E-value=4.4e-06 Score=60.19 Aligned_cols=58 Identities=10% Similarity=-0.030 Sum_probs=52.4
Q ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCccCCcChHHHHHHHHHHHHHh
Q 034686 26 SVKRVYLVCEEDIGLPKHFQHWMIQNYPVNEVMEIKGGDHMAMLSEPQKLCDCLSQISLKY 86 (87)
Q Consensus 26 ~~P~~~i~g~~D~~~p~~~~~~~~~~~~~~~~~~l~~aGH~p~l~~p~~~~~~l~~~~~~~ 86 (87)
.+|+++|+|++|.++|.+..+.+++..++.++.+++++ ++.+.++++.+.+.+|++..
T Consensus 355 ~~PvLiI~G~~D~ivP~~~a~~l~~~~~~~~l~~i~~~---~~~e~~~~~~~~i~~wL~~~ 412 (414)
T PRK05077 355 PTPMLSGYWKNDPFSPEEDSRLIASSSADGKLLEIPFK---PVYRNFDKALQEISDWLEDR 412 (414)
T ss_pred CCcEEEEecCCCCCCCHHHHHHHHHhCCCCeEEEccCC---CccCCHHHHHHHHHHHHHHH
Confidence 48999999999999999999988888888999999964 78899999999999998763
No 46
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=98.27 E-value=6.1e-06 Score=57.65 Aligned_cols=59 Identities=7% Similarity=0.071 Sum_probs=50.9
Q ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhC--CCCcEEEecCCCCccCCcC-hHHHHHHHHHHHH
Q 034686 26 SVKRVYLVCEEDIGLPKHFQHWMIQNY--PVNEVMEIKGGDHMAMLSE-PQKLCDCLSQISL 84 (87)
Q Consensus 26 ~~P~~~i~g~~D~~~p~~~~~~~~~~~--~~~~~~~l~~aGH~p~l~~-p~~~~~~l~~~~~ 84 (87)
++|+++|+|++|.+++.+..+.+.+.. +..++.+++|++|.++.+. .+++.+.|.+|+.
T Consensus 270 ~~P~Lii~G~~D~vv~~~~~~~~~~~~~~~~~~l~~~~g~~H~i~~E~~~~~v~~~i~~wL~ 331 (332)
T TIGR01607 270 DIPILFIHSKGDCVCSYEGTVSFYNKLSISNKELHTLEDMDHVITIEPGNEEVLKKIIEWIS 331 (332)
T ss_pred CCCEEEEEeCCCCccCHHHHHHHHHhccCCCcEEEEECCCCCCCccCCCHHHHHHHHHHHhh
Confidence 589999999999999999888877665 4578889999999999985 7889998888875
No 47
>PLN02872 triacylglycerol lipase
Probab=98.27 E-value=3.7e-06 Score=60.44 Aligned_cols=61 Identities=13% Similarity=0.055 Sum_probs=52.7
Q ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhCCC-CcEEEecCCCCccCC---cChHHHHHHHHHHHHHh
Q 034686 26 SVKRVYLVCEEDIGLPKHFQHWMIQNYPV-NEVMEIKGGDHMAML---SEPQKLCDCLSQISLKY 86 (87)
Q Consensus 26 ~~P~~~i~g~~D~~~p~~~~~~~~~~~~~-~~~~~l~~aGH~p~l---~~p~~~~~~l~~~~~~~ 86 (87)
++|+++++|++|.+++++..+.+.+.++. .++..++++||..++ +.|+++.+.|.+|++++
T Consensus 325 ~~Pv~i~~G~~D~lv~~~dv~~l~~~Lp~~~~l~~l~~~gH~dfi~~~eape~V~~~Il~fL~~~ 389 (395)
T PLN02872 325 SLPLWMGYGGTDGLADVTDVEHTLAELPSKPELLYLENYGHIDFLLSTSAKEDVYNHMIQFFRSL 389 (395)
T ss_pred CccEEEEEcCCCCCCCHHHHHHHHHHCCCccEEEEcCCCCCHHHHhCcchHHHHHHHHHHHHHHh
Confidence 37999999999999999888888888876 577789999997554 99999999999998764
No 48
>PRK10985 putative hydrolase; Provisional
Probab=98.23 E-value=3.7e-06 Score=58.33 Aligned_cols=59 Identities=10% Similarity=0.003 Sum_probs=46.0
Q ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCccCCcCh-----HHHHHHHHHHHH
Q 034686 26 SVKRVYLVCEEDIGLPKHFQHWMIQNYPVNEVMEIKGGDHMAMLSEP-----QKLCDCLSQISL 84 (87)
Q Consensus 26 ~~P~~~i~g~~D~~~p~~~~~~~~~~~~~~~~~~l~~aGH~p~l~~p-----~~~~~~l~~~~~ 84 (87)
.+|+++|+|++|.+++.+....+.+..++.++.+++++||+++++-. -..-+.+.+|+.
T Consensus 255 ~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~GH~~~~~g~~~~~~~w~~~~~~~~~~ 318 (324)
T PRK10985 255 RKPTLIIHAKDDPFMTHEVIPKPESLPPNVEYQLTEHGGHVGFVGGTLLKPQMWLEQRIPDWLT 318 (324)
T ss_pred CCCEEEEecCCCCCCChhhChHHHHhCCCeEEEECCCCCceeeCCCCCCCCCccHHHHHHHHHH
Confidence 37999999999999998888777766778888889999999999853 244445555544
No 49
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=98.21 E-value=3.3e-06 Score=62.81 Aligned_cols=48 Identities=15% Similarity=0.046 Sum_probs=44.1
Q ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCccCCcChH
Q 034686 26 SVKRVYLVCEEDIGLPKHFQHWMIQNYPVNEVMEIKGGDHMAMLSEPQ 73 (87)
Q Consensus 26 ~~P~~~i~g~~D~~~p~~~~~~~~~~~~~~~~~~l~~aGH~p~l~~p~ 73 (87)
++|+++|+|++|.++|.+....+.+..++.+.++++++||.+++++|.
T Consensus 415 ~vPvLvV~G~~D~IvP~~sa~~l~~~i~~~~~~vL~~sGHi~~ienPp 462 (532)
T TIGR01838 415 KVPVYIIATREDHIAPWQSAYRGAALLGGPKTFVLGESGHIAGVVNPP 462 (532)
T ss_pred CCCEEEEeeCCCCcCCHHHHHHHHHHCCCCEEEEECCCCCchHhhCCC
Confidence 489999999999999999998888888888888999999999999985
No 50
>PF08386 Abhydrolase_4: TAP-like protein; InterPro: IPR013595 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a C-terminal domain associated with putative hydrolases and bacterial peptidases that belong to MEROPS peptidase family S33 (clan SC). They are related to a tripeptidyl aminopeptidase from Streptomyces lividans (Q54410 from SWISSPROT). A member of this family (Q6E3K7 from SWISSPROT) is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterised from Propionibacterium freudenreichii []. ; GO: 0008233 peptidase activity
Probab=98.17 E-value=1.7e-05 Score=47.13 Aligned_cols=59 Identities=14% Similarity=0.095 Sum_probs=49.1
Q ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCccCCcChHHHHHHHHHHHH
Q 034686 26 SVKRVYLVCEEDIGLPKHFQHWMIQNYPVNEVMEIKGGDHMAMLSEPQKLCDCLSQISL 84 (87)
Q Consensus 26 ~~P~~~i~g~~D~~~p~~~~~~~~~~~~~~~~~~l~~aGH~p~l~~p~~~~~~l~~~~~ 84 (87)
..|+++|.++.|.+.|.+.++.|++.+++.+++..+|.||..+...-.-+.+.+.+|+.
T Consensus 34 ~~piL~l~~~~Dp~TP~~~a~~~~~~l~~s~lvt~~g~gHg~~~~~s~C~~~~v~~yl~ 92 (103)
T PF08386_consen 34 APPILVLGGTHDPVTPYEGARAMAARLPGSRLVTVDGAGHGVYAGGSPCVDKAVDDYLL 92 (103)
T ss_pred CCCEEEEecCcCCCCcHHHHHHHHHHCCCceEEEEeccCcceecCCChHHHHHHHHHHH
Confidence 38999999999999999999999999999999999999999997333444555555543
No 51
>KOG2984 consensus Predicted hydrolase [General function prediction only]
Probab=97.94 E-value=1.2e-05 Score=53.96 Aligned_cols=61 Identities=8% Similarity=-0.053 Sum_probs=55.5
Q ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCccCCcChHHHHHHHHHHHHH
Q 034686 25 GSVKRVYLVCEEDIGLPKHFQHWMIQNYPVNEVMEIKGGDHMAMLSEPQKLCDCLSQISLK 85 (87)
Q Consensus 25 ~~~P~~~i~g~~D~~~p~~~~~~~~~~~~~~~~~~l~~aGH~p~l~~p~~~~~~l~~~~~~ 85 (87)
.++|+++++|++|+.++......+....+..++++++..+|..++--|++|...+.+|++.
T Consensus 215 vkcPtli~hG~kDp~~~~~hv~fi~~~~~~a~~~~~peGkHn~hLrya~eFnklv~dFl~~ 275 (277)
T KOG2984|consen 215 VKCPTLIMHGGKDPFCGDPHVCFIPVLKSLAKVEIHPEGKHNFHLRYAKEFNKLVLDFLKS 275 (277)
T ss_pred ccCCeeEeeCCcCCCCCCCCccchhhhcccceEEEccCCCcceeeechHHHHHHHHHHHhc
Confidence 3489999999999999988888877778889999999999999999999999999999864
No 52
>PRK07868 acyl-CoA synthetase; Validated
Probab=97.92 E-value=3.7e-05 Score=60.51 Aligned_cols=59 Identities=14% Similarity=0.017 Sum_probs=49.9
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHHhCCCCcE-EEecCCCCccCCc---ChHHHHHHHHHHHHH
Q 034686 27 VKRVYLVCEEDIGLPKHFQHWMIQNYPVNEV-MEIKGGDHMAMLS---EPQKLCDCLSQISLK 85 (87)
Q Consensus 27 ~P~~~i~g~~D~~~p~~~~~~~~~~~~~~~~-~~l~~aGH~p~l~---~p~~~~~~l~~~~~~ 85 (87)
+|+++|+|++|.++|++..+.+.+..++.++ ++++++||+.++. .++++-..|.+|+++
T Consensus 298 ~P~L~i~G~~D~ivp~~~~~~l~~~i~~a~~~~~~~~~GH~g~~~g~~a~~~~wp~i~~wl~~ 360 (994)
T PRK07868 298 CPVLAFVGEVDDIGQPASVRGIRRAAPNAEVYESLIRAGHFGLVVGSRAAQQTWPTVADWVKW 360 (994)
T ss_pred CCEEEEEeCCCCCCCHHHHHHHHHhCCCCeEEEEeCCCCCEeeeechhhhhhhChHHHHHHHH
Confidence 7999999999999999999989888888776 5778899998883 477777777777764
No 53
>KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=97.82 E-value=8.8e-05 Score=52.75 Aligned_cols=60 Identities=13% Similarity=0.132 Sum_probs=46.5
Q ss_pred CcceEEEEeCCCCCCCHHHHHHHHHh--CCCCcEEEecCCCCccCCcChHHHHHHHHHHHHHh
Q 034686 26 SVKRVYLVCEEDIGLPKHFQHWMIQN--YPVNEVMEIKGGDHMAMLSEPQKLCDCLSQISLKY 86 (87)
Q Consensus 26 ~~P~~~i~g~~D~~~p~~~~~~~~~~--~~~~~~~~l~~aGH~p~l~~p~~~~~~l~~~~~~~ 86 (87)
++|+++|+|++|=+-... ...+... ....+++++++|||-.++++|+.|.+.+.++++.+
T Consensus 303 ~~pv~fiyG~~dWmD~~~-g~~~~~~~~~~~~~~~~v~~aGHhvylDnp~~Fn~~v~~~~~~~ 364 (365)
T KOG4409|consen 303 DVPVTFIYGDRDWMDKNA-GLEVTKSLMKEYVEIIIVPGAGHHVYLDNPEFFNQIVLEECDKV 364 (365)
T ss_pred CCCEEEEecCcccccchh-HHHHHHHhhcccceEEEecCCCceeecCCHHHHHHHHHHHHhcc
Confidence 599999999987654333 3333333 23468889999999999999999999999988653
No 54
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=97.82 E-value=3.8e-05 Score=49.94 Aligned_cols=62 Identities=13% Similarity=0.066 Sum_probs=45.0
Q ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhC----CCCcEEEecCCCCccC-CcChHHHHHHHHHHHHHh
Q 034686 25 GSVKRVYLVCEEDIGLPKHFQHWMIQNY----PVNEVMEIKGGDHMAM-LSEPQKLCDCLSQISLKY 86 (87)
Q Consensus 25 ~~~P~~~i~g~~D~~~p~~~~~~~~~~~----~~~~~~~l~~aGH~p~-l~~p~~~~~~l~~~~~~~ 86 (87)
...|+++++|++|..+|++....+.+.+ ...++++++++||... -+...+..+.+.+|+..+
T Consensus 143 ~~~P~li~hG~~D~~Vp~~~s~~~~~~L~~~g~~~~~~~~p~~gH~~~~~~~~~~~~~~~~~f~~~~ 209 (213)
T PF00326_consen 143 IKPPVLIIHGENDPRVPPSQSLRLYNALRKAGKPVELLIFPGEGHGFGNPENRRDWYERILDFFDKY 209 (213)
T ss_dssp GGSEEEEEEETTBSSSTTHHHHHHHHHHHHTTSSEEEEEETT-SSSTTSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEccCCCCccCHHHHHHHHHHHHhcCCCEEEEEcCcCCCCCCCchhHHHHHHHHHHHHHHH
Confidence 4589999999999999988887766654 2468889999999433 344556666667776653
No 55
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=97.78 E-value=9.5e-05 Score=51.72 Aligned_cols=59 Identities=8% Similarity=0.112 Sum_probs=47.8
Q ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhCCC--CcEEEecCCCCccCCcCh---HHHHHHHHHHHHH
Q 034686 26 SVKRVYLVCEEDIGLPKHFQHWMIQNYPV--NEVMEIKGGDHMAMLSEP---QKLCDCLSQISLK 85 (87)
Q Consensus 26 ~~P~~~i~g~~D~~~p~~~~~~~~~~~~~--~~~~~l~~aGH~p~l~~p---~~~~~~l~~~~~~ 85 (87)
++|+++++|++|.++|++....+.+..+. .++..++ +||..++..+ +++.+.|.+|+.+
T Consensus 286 ~~Pvliv~G~~D~i~~~~~~~~~~~~~~~~~~~~~~~~-~gH~~~~~~~~~~~~v~~~i~~wl~~ 349 (350)
T TIGR01836 286 KMPILNIYAERDHLVPPDASKALNDLVSSEDYTELSFP-GGHIGIYVSGKAQKEVPPAIGKWLQA 349 (350)
T ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHcCCCCeEEEEcC-CCCEEEEECchhHhhhhHHHHHHHHh
Confidence 48999999999999999988888887764 3556666 8999988765 7788888888764
No 56
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=97.64 E-value=0.00014 Score=49.44 Aligned_cols=58 Identities=16% Similarity=0.128 Sum_probs=43.8
Q ss_pred CcceEEEEeCCCCCCCHHHH------HHHHHhC--CCCcEEEecCCCCccCCcC-hHHHHHHHHHHHH
Q 034686 26 SVKRVYLVCEEDIGLPKHFQ------HWMIQNY--PVNEVMEIKGGDHMAMLSE-PQKLCDCLSQISL 84 (87)
Q Consensus 26 ~~P~~~i~g~~D~~~p~~~~------~~~~~~~--~~~~~~~l~~aGH~p~l~~-p~~~~~~l~~~~~ 84 (87)
.+|+++++|++|...+ ... ...++.. ++.++..++++||++..+. ++++.+.|.+|+.
T Consensus 207 ~~P~ll~~g~~D~~~~-~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~H~l~~e~~~~~v~~~i~~wL~ 273 (274)
T TIGR03100 207 QGPVLFILSGNDLTAQ-EFADSVLGEPAWRGALEDPGIERVEIDGADHTFSDRVWREWVAARTTEWLR 273 (274)
T ss_pred CCcEEEEEcCcchhHH-HHHHHhccChhhHHHhhcCCeEEEecCCCCcccccHHHHHHHHHHHHHHHh
Confidence 4899999999999864 222 2223323 6778888999999985554 5999999999985
No 57
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=97.59 E-value=0.00013 Score=44.05 Aligned_cols=42 Identities=19% Similarity=0.308 Sum_probs=34.4
Q ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhCC-CCcEEEecCCCCc
Q 034686 25 GSVKRVYLVCEEDIGLPKHFQHWMIQNYP-VNEVMEIKGGDHM 66 (87)
Q Consensus 25 ~~~P~~~i~g~~D~~~p~~~~~~~~~~~~-~~~~~~l~~aGH~ 66 (87)
..+|+++++|++|..++.+..+.+.+..+ ..+++.++|++|+
T Consensus 103 ~~~pv~~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~i~g~~H~ 145 (145)
T PF12695_consen 103 IRIPVLFIHGENDPLVPPEQVRRLYEALPGPKELYIIPGAGHF 145 (145)
T ss_dssp TTSEEEEEEETT-SSSHHHHHHHHHHHHCSSEEEEEETTS-TT
T ss_pred cCCcEEEEEECCCCcCCHHHHHHHHHHcCCCcEEEEeCCCcCc
Confidence 33799999999999999988888777776 5789999999996
No 58
>PRK11460 putative hydrolase; Provisional
Probab=97.47 E-value=0.00035 Score=46.60 Aligned_cols=59 Identities=10% Similarity=-0.164 Sum_probs=44.0
Q ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhCC----CCcEEEecCCCCccCCcChHHHHHHHHHHH
Q 034686 25 GSVKRVYLVCEEDIGLPKHFQHWMIQNYP----VNEVMEIKGGDHMAMLSEPQKLCDCLSQIS 83 (87)
Q Consensus 25 ~~~P~~~i~g~~D~~~p~~~~~~~~~~~~----~~~~~~l~~aGH~p~l~~p~~~~~~l~~~~ 83 (87)
...|+++++|++|.++|.+..+.+.+.+. ..++++++|+||...-+.-+...+.|.+++
T Consensus 147 ~~~pvli~hG~~D~vvp~~~~~~~~~~L~~~g~~~~~~~~~~~gH~i~~~~~~~~~~~l~~~l 209 (232)
T PRK11460 147 TATTIHLIHGGEDPVIDVAHAVAAQEALISLGGDVTLDIVEDLGHAIDPRLMQFALDRLRYTV 209 (232)
T ss_pred CCCcEEEEecCCCCccCHHHHHHHHHHHHHCCCCeEEEEECCCCCCCCHHHHHHHHHHHHHHc
Confidence 45899999999999999999887776543 346777899999986555555555554443
No 59
>PRK10566 esterase; Provisional
Probab=97.45 E-value=0.00064 Score=44.80 Aligned_cols=56 Identities=13% Similarity=-0.047 Sum_probs=40.9
Q ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhCCC------CcEEEecCCCCccCCcChHHHHHHHHHHHHH
Q 034686 26 SVKRVYLVCEEDIGLPKHFQHWMIQNYPV------NEVMEIKGGDHMAMLSEPQKLCDCLSQISLK 85 (87)
Q Consensus 26 ~~P~~~i~g~~D~~~p~~~~~~~~~~~~~------~~~~~l~~aGH~p~l~~p~~~~~~l~~~~~~ 85 (87)
..|+++|+|++|.++|.+..+.+.+.++. .+.+.++|+||... +++ .+.+.+|++.
T Consensus 186 ~~P~Lii~G~~D~~v~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~H~~~---~~~-~~~~~~fl~~ 247 (249)
T PRK10566 186 DRPLLLWHGLADDVVPAAESLRLQQALRERGLDKNLTCLWEPGVRHRIT---PEA-LDAGVAFFRQ 247 (249)
T ss_pred CCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCCcceEEEecCCCCCccC---HHH-HHHHHHHHHh
Confidence 57999999999999999988877776532 35556889999853 444 4555566553
No 60
>PRK11071 esterase YqiA; Provisional
Probab=97.43 E-value=0.00074 Score=43.83 Aligned_cols=53 Identities=11% Similarity=-0.075 Sum_probs=44.0
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCccCCcChHHHHHHHHHHHH
Q 034686 27 VKRVYLVCEEDIGLPKHFQHWMIQNYPVNEVMEIKGGDHMAMLSEPQKLCDCLSQISL 84 (87)
Q Consensus 27 ~P~~~i~g~~D~~~p~~~~~~~~~~~~~~~~~~l~~aGH~p~l~~p~~~~~~l~~~~~ 84 (87)
.|+++|+|++|.++|.+.+..+.+.. +...++|++|.- +..++..+.+.+|++
T Consensus 137 ~~v~iihg~~De~V~~~~a~~~~~~~---~~~~~~ggdH~f--~~~~~~~~~i~~fl~ 189 (190)
T PRK11071 137 DLIWLLQQTGDEVLDYRQAVAYYAAC---RQTVEEGGNHAF--VGFERYFNQIVDFLG 189 (190)
T ss_pred hhEEEEEeCCCCcCCHHHHHHHHHhc---ceEEECCCCcch--hhHHHhHHHHHHHhc
Confidence 67789999999999999998887743 556789999986 666888888888764
No 61
>PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins.
Probab=97.26 E-value=0.00057 Score=45.47 Aligned_cols=56 Identities=16% Similarity=0.213 Sum_probs=45.1
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHHhCC--C--CcEEEecCCCCccCC-cChHHHHHHHHHH
Q 034686 27 VKRVYLVCEEDIGLPKHFQHWMIQNYP--V--NEVMEIKGGDHMAML-SEPQKLCDCLSQI 82 (87)
Q Consensus 27 ~P~~~i~g~~D~~~p~~~~~~~~~~~~--~--~~~~~l~~aGH~p~l-~~p~~~~~~l~~~ 82 (87)
+|.+|++++.|.+++.+..++.++... + .+...+++++|+.|+ ++|++-.+.+.+|
T Consensus 179 ~p~lylYS~~D~l~~~~~ve~~~~~~~~~G~~V~~~~f~~S~HV~H~r~~p~~Y~~~v~~f 239 (240)
T PF05705_consen 179 CPRLYLYSKADPLIPWRDVEEHAEEARRKGWDVRAEKFEDSPHVAHLRKHPDRYWRAVDEF 239 (240)
T ss_pred CCeEEecCCCCcCcCHHHHHHHHHHHHHcCCeEEEecCCCCchhhhcccCHHHHHHHHHhh
Confidence 799999999999999887766665542 2 355567799999888 8899999988876
No 62
>PRK13604 luxD acyl transferase; Provisional
Probab=97.24 E-value=0.00096 Score=46.82 Aligned_cols=43 Identities=7% Similarity=0.046 Sum_probs=37.9
Q ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhCC--CCcEEEecCCCCccC
Q 034686 26 SVKRVYLVCEEDIGLPKHFQHWMIQNYP--VNEVMEIKGGDHMAM 68 (87)
Q Consensus 26 ~~P~~~i~g~~D~~~p~~~~~~~~~~~~--~~~~~~l~~aGH~p~ 68 (87)
++|+++|+|++|..+|.+..+.+.+..+ ..+++.++|++|...
T Consensus 202 ~~PvLiIHG~~D~lVp~~~s~~l~e~~~s~~kkl~~i~Ga~H~l~ 246 (307)
T PRK13604 202 DIPFIAFTANNDSWVKQSEVIDLLDSIRSEQCKLYSLIGSSHDLG 246 (307)
T ss_pred CCCEEEEEcCCCCccCHHHHHHHHHHhccCCcEEEEeCCCccccC
Confidence 3899999999999999999988888764 578899999999854
No 63
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=97.11 E-value=0.0016 Score=49.18 Aligned_cols=73 Identities=11% Similarity=0.001 Sum_probs=52.4
Q ss_pred ccccCcccccccCCcceEEEEeCCCCCCCHHHHHHHHHhCC----CCcEEEecCCCCccCC-cChHHHHHHHHHHHHH
Q 034686 13 LSKASKFSDEGYGSVKRVYLVCEEDIGLPKHFQHWMIQNYP----VNEVMEIKGGDHMAML-SEPQKLCDCLSQISLK 85 (87)
Q Consensus 13 ~~~~~~~~~~~~~~~P~~~i~g~~D~~~p~~~~~~~~~~~~----~~~~~~l~~aGH~p~l-~~p~~~~~~l~~~~~~ 85 (87)
+.+..++....-.+.|+++|+|++|.-+|.+.+..|.+.+. ..+++++++.||..-- ++-....+.+.+|+.+
T Consensus 538 ~~~~sp~~~~~~i~~P~LliHG~~D~~v~~~q~~~~~~aL~~~g~~~~~~~~p~e~H~~~~~~~~~~~~~~~~~~~~~ 615 (620)
T COG1506 538 YEDRSPIFYADNIKTPLLLIHGEEDDRVPIEQAEQLVDALKRKGKPVELVVFPDEGHGFSRPENRVKVLKEILDWFKR 615 (620)
T ss_pred HHhcChhhhhcccCCCEEEEeecCCccCChHHHHHHHHHHHHcCceEEEEEeCCCCcCCCCchhHHHHHHHHHHHHHH
Confidence 44555665555566899999999999999998877776653 4688899999999665 3344455555555544
No 64
>COG1647 Esterase/lipase [General function prediction only]
Probab=97.05 E-value=0.002 Score=43.63 Aligned_cols=58 Identities=12% Similarity=0.173 Sum_probs=49.7
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHHhCC--CCcEEEecCCCCccCC-cChHHHHHHHHHHHH
Q 034686 27 VKRVYLVCEEDIGLPKHFQHWMIQNYP--VNEVMEIKGGDHMAML-SEPQKLCDCLSQISL 84 (87)
Q Consensus 27 ~P~~~i~g~~D~~~p~~~~~~~~~~~~--~~~~~~l~~aGH~p~l-~~p~~~~~~l~~~~~ 84 (87)
.|++++.|++|..+|.+.+..+-+... ..++..++++||..-. ...|.+.+.+.+|++
T Consensus 182 ~pt~vvq~~~D~mv~~~sA~~Iy~~v~s~~KeL~~~e~SgHVIt~D~Erd~v~e~V~~FL~ 242 (243)
T COG1647 182 SPTLVVQGRQDEMVPAESANFIYDHVESDDKELKWLEGSGHVITLDKERDQVEEDVITFLE 242 (243)
T ss_pred cchhheecccCCCCCHHHHHHHHHhccCCcceeEEEccCCceeecchhHHHHHHHHHHHhh
Confidence 699999999999999999987777653 4688899999999766 668999999998875
No 65
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=97.02 E-value=0.0014 Score=43.01 Aligned_cols=58 Identities=17% Similarity=0.114 Sum_probs=37.9
Q ss_pred cCCcceEEEEeCCCCCCCHHHHHHHHHhCC----CCcEEEecCCCCccCCcChHHHHHHHHHHHHH
Q 034686 24 YGSVKRVYLVCEEDIGLPKHFQHWMIQNYP----VNEVMEIKGGDHMAMLSEPQKLCDCLSQISLK 85 (87)
Q Consensus 24 ~~~~P~~~i~g~~D~~~p~~~~~~~~~~~~----~~~~~~l~~aGH~p~l~~p~~~~~~l~~~~~~ 85 (87)
..++|.++++|++|.++|.+..+...+.+. ..++..++|.||... .+..+.+.+|+++
T Consensus 153 ~~~~pi~~~hG~~D~vvp~~~~~~~~~~L~~~~~~v~~~~~~g~gH~i~----~~~~~~~~~~l~~ 214 (216)
T PF02230_consen 153 LAKTPILIIHGDEDPVVPFEWAEKTAEFLKAAGANVEFHEYPGGGHEIS----PEELRDLREFLEK 214 (216)
T ss_dssp CCTS-EEEEEETT-SSSTHHHHHHHHHHHHCTT-GEEEEEETT-SSS------HHHHHHHHHHHHH
T ss_pred cCCCcEEEEecCCCCcccHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCC----HHHHHHHHHHHhh
Confidence 346899999999999999998876665542 357788999999875 3333445555543
No 66
>PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic. The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A.
Probab=97.01 E-value=0.0017 Score=41.83 Aligned_cols=43 Identities=19% Similarity=0.295 Sum_probs=35.2
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCccCCc
Q 034686 27 VKRVYLVCEEDIGLPKHFQHWMIQNYPVNEVMEIKGGDHMAMLS 70 (87)
Q Consensus 27 ~P~~~i~g~~D~~~p~~~~~~~~~~~~~~~~~~l~~aGH~p~l~ 70 (87)
+|.++|.+++|..+|.+.++.+++.+ +.+++.++++||+---+
T Consensus 115 ~~~~viaS~nDp~vp~~~a~~~A~~l-~a~~~~~~~~GHf~~~~ 157 (171)
T PF06821_consen 115 FPSIVIASDNDPYVPFERAQRLAQRL-GAELIILGGGGHFNAAS 157 (171)
T ss_dssp CCEEEEEETTBSSS-HHHHHHHHHHH-T-EEEEETS-TTSSGGG
T ss_pred CCeEEEEcCCCCccCHHHHHHHHHHc-CCCeEECCCCCCccccc
Confidence 78899999999999999999999988 55888999999986443
No 67
>COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism]
Probab=96.99 E-value=0.004 Score=44.68 Aligned_cols=59 Identities=17% Similarity=0.175 Sum_probs=52.4
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHHhCCCCc-EEEec-CCCCccCCcChHHHHHHHHHHHHH
Q 034686 27 VKRVYLVCEEDIGLPKHFQHWMIQNYPVNE-VMEIK-GGDHMAMLSEPQKLCDCLSQISLK 85 (87)
Q Consensus 27 ~P~~~i~g~~D~~~p~~~~~~~~~~~~~~~-~~~l~-~aGH~p~l~~p~~~~~~l~~~~~~ 85 (87)
+|++++--+.|.+.|++.++..++.++... +++++ ..||..|+...+.+...|..|++.
T Consensus 307 ~~~lv~gi~sD~lfp~~~~~~~~~~L~~~~~~~~i~S~~GHDaFL~e~~~~~~~i~~fL~~ 367 (368)
T COG2021 307 APVLVVGITSDWLFPPELQRALAEALPAAGALREIDSPYGHDAFLVESEAVGPLIRKFLAL 367 (368)
T ss_pred cCEEEEEecccccCCHHHHHHHHHhccccCceEEecCCCCchhhhcchhhhhHHHHHHhhc
Confidence 799999999999999999999999988765 66776 579999999999999999998864
No 68
>KOG4667 consensus Predicted esterase [Lipid transport and metabolism]
Probab=96.98 E-value=0.0014 Score=44.40 Aligned_cols=43 Identities=19% Similarity=0.132 Sum_probs=39.8
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCccCC
Q 034686 27 VKRVYLVCEEDIGLPKHFQHWMIQNYPVNEVMEIKGGDHMAML 69 (87)
Q Consensus 27 ~P~~~i~g~~D~~~p~~~~~~~~~~~~~~~~~~l~~aGH~p~l 69 (87)
+|++-++|..|.++|.+.+..+++..++.++++++|+.|.--.
T Consensus 200 C~VLTvhGs~D~IVPve~AkefAk~i~nH~L~iIEgADHnyt~ 242 (269)
T KOG4667|consen 200 CRVLTVHGSEDEIVPVEDAKEFAKIIPNHKLEIIEGADHNYTG 242 (269)
T ss_pred CceEEEeccCCceeechhHHHHHHhccCCceEEecCCCcCccc
Confidence 8999999999999999999999999999999999999997443
No 69
>COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.84 E-value=0.0062 Score=41.50 Aligned_cols=66 Identities=9% Similarity=-0.011 Sum_probs=53.1
Q ss_pred cccccccCCcceEEEEeCCCCCCCHHHHHHHHHhCC-CCcEEEecCCCCccCCcChHHHHHHHHHHHH
Q 034686 18 KFSDEGYGSVKRVYLVCEEDIGLPKHFQHWMIQNYP-VNEVMEIKGGDHMAMLSEPQKLCDCLSQISL 84 (87)
Q Consensus 18 ~~~~~~~~~~P~~~i~g~~D~~~p~~~~~~~~~~~~-~~~~~~l~~aGH~p~l~~p~~~~~~l~~~~~ 84 (87)
+...+.-.++|+..+.|++|..++.+....-.+... ..++.+++ .||+-..++.+++.+.|.+.++
T Consensus 168 ~~~~~~pl~~pi~~~~G~~D~~vs~~~~~~W~~~t~~~f~l~~fd-GgHFfl~~~~~~v~~~i~~~l~ 234 (244)
T COG3208 168 RYPPPAPLACPIHAFGGEKDHEVSRDELGAWREHTKGDFTLRVFD-GGHFFLNQQREEVLARLEQHLA 234 (244)
T ss_pred ccCCCCCcCcceEEeccCcchhccHHHHHHHHHhhcCCceEEEec-CcceehhhhHHHHHHHHHHHhh
Confidence 344444455899999999999999887764455554 67999998 7999999999999999988764
No 70
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=96.73 E-value=0.0075 Score=41.89 Aligned_cols=61 Identities=11% Similarity=0.035 Sum_probs=46.8
Q ss_pred CCcceEEEEeCCCCCCC-HHHHHHHHHhC--CCCcEEEecCCCCccCCcCh---HHHHHHHHHHHHH
Q 034686 25 GSVKRVYLVCEEDIGLP-KHFQHWMIQNY--PVNEVMEIKGGDHMAMLSEP---QKLCDCLSQISLK 85 (87)
Q Consensus 25 ~~~P~~~i~g~~D~~~p-~~~~~~~~~~~--~~~~~~~l~~aGH~p~l~~p---~~~~~~l~~~~~~ 85 (87)
..+|++++.|++|.+++ .+.+....++. +..++.+++|+.|-.+.|.. +++.+.+.+|+..
T Consensus 227 ~~~PvLll~g~~D~vv~~~~~~~~~~~~~~~~~~~~~~~~g~~He~~~E~~~~r~~~~~~~~~~l~~ 293 (298)
T COG2267 227 IALPVLLLQGGDDRVVDNVEGLARFFERAGSPDKELKVIPGAYHELLNEPDRAREEVLKDILAWLAE 293 (298)
T ss_pred ccCCEEEEecCCCccccCcHHHHHHHHhcCCCCceEEecCCcchhhhcCcchHHHHHHHHHHHHHHh
Confidence 34999999999999999 56665555554 35678999999999988764 5666677766654
No 71
>PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function.
Probab=96.73 E-value=0.0037 Score=44.59 Aligned_cols=56 Identities=18% Similarity=0.278 Sum_probs=49.7
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCc-cCCcChHHHHHHHHHHHH
Q 034686 28 KRVYLVCEEDIGLPKHFQHWMIQNYPVNEVMEIKGGDHM-AMLSEPQKLCDCLSQISL 84 (87)
Q Consensus 28 P~~~i~g~~D~~~p~~~~~~~~~~~~~~~~~~l~~aGH~-p~l~~p~~~~~~l~~~~~ 84 (87)
-+.+|.+++|.-+|......+.+.+|+.++..++ +||. .++-+.+.+.+.|.+.+.
T Consensus 291 ~ii~V~A~~DaYVPr~~v~~Lq~~WPGsEvR~l~-gGHVsA~L~~q~~fR~AI~Daf~ 347 (348)
T PF09752_consen 291 AIIFVAAKNDAYVPRHGVLSLQEIWPGSEVRYLP-GGHVSAYLLHQEAFRQAIYDAFE 347 (348)
T ss_pred cEEEEEecCceEechhhcchHHHhCCCCeEEEec-CCcEEEeeechHHHHHHHHHHhh
Confidence 4788999999999988777899999999999998 6998 788999999999988764
No 72
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=96.57 E-value=0.006 Score=41.87 Aligned_cols=58 Identities=10% Similarity=0.048 Sum_probs=44.4
Q ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhCCC-CcEEEecCCCCccCCcChHHHHHHHHHHHH
Q 034686 26 SVKRVYLVCEEDIGLPKHFQHWMIQNYPV-NEVMEIKGGDHMAMLSEPQKLCDCLSQISL 84 (87)
Q Consensus 26 ~~P~~~i~g~~D~~~p~~~~~~~~~~~~~-~~~~~l~~aGH~p~l~~p~~~~~~l~~~~~ 84 (87)
++|+++++|++|.+++......+-+..+. .+-..+.|+||.-... ..+..+.|.+|+.
T Consensus 192 ~~PVLiiHgtdDevv~~sHg~~Lye~~k~~~epl~v~g~gH~~~~~-~~~yi~~l~~f~~ 250 (258)
T KOG1552|consen 192 TCPVLIIHGTDDEVVDFSHGKALYERCKEKVEPLWVKGAGHNDIEL-YPEYIEHLRRFIS 250 (258)
T ss_pred cCCEEEEecccCceecccccHHHHHhccccCCCcEEecCCCccccc-CHHHHHHHHHHHH
Confidence 37999999999999999999888888764 4666778899986544 4455666666654
No 73
>KOG2551 consensus Phospholipase/carboxyhydrolase [Amino acid transport and metabolism]
Probab=96.28 E-value=0.022 Score=38.46 Aligned_cols=58 Identities=17% Similarity=0.241 Sum_probs=42.2
Q ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCccCCcCh--HHHHHHHHHHH
Q 034686 25 GSVKRVYLVCEEDIGLPKHFQHWMIQNYPVNEVMEIKGGDHMAMLSEP--QKLCDCLSQIS 83 (87)
Q Consensus 25 ~~~P~~~i~g~~D~~~p~~~~~~~~~~~~~~~~~~l~~aGH~p~l~~p--~~~~~~l~~~~ 83 (87)
-++|++.|.|+.|.++|......+++..++..+..=+ .||+..-..+ +.+++.|..+.
T Consensus 162 i~~PSLHi~G~~D~iv~~~~s~~L~~~~~~a~vl~Hp-ggH~VP~~~~~~~~i~~fi~~~~ 221 (230)
T KOG2551|consen 162 LSTPSLHIFGETDTIVPSERSEQLAESFKDATVLEHP-GGHIVPNKAKYKEKIADFIQSFL 221 (230)
T ss_pred CCCCeeEEecccceeecchHHHHHHHhcCCCeEEecC-CCccCCCchHHHHHHHHHHHHHH
Confidence 3489999999999999999888899998877655555 8998655442 33444444433
No 74
>PTZ00472 serine carboxypeptidase (CBP1); Provisional
Probab=96.21 E-value=0.015 Score=42.75 Aligned_cols=58 Identities=9% Similarity=0.013 Sum_probs=43.9
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHHhCC-----------------------------------CCcEEEecCCCCccCCcC
Q 034686 27 VKRVYLVCEEDIGLPKHFQHWMIQNYP-----------------------------------VNEVMEIKGGDHMAMLSE 71 (87)
Q Consensus 27 ~P~~~i~g~~D~~~p~~~~~~~~~~~~-----------------------------------~~~~~~l~~aGH~p~l~~ 71 (87)
+++++..|..|.+++..-.+...+.+. +..++.+.+|||++..++
T Consensus 365 ikVLiYnGd~D~icn~~Gt~~wi~~L~w~g~~~f~~a~~~~w~~~~~~v~G~vk~~~~~~~~~l~~~~V~~AGH~vp~d~ 444 (462)
T PTZ00472 365 VRVMIYAGDMDFICNWIGNKAWTLALQWPGNAEFNAAPDVPFSAVDGRWAGLVRSAASNTSSGFSFVQVYNAGHMVPMDQ 444 (462)
T ss_pred ceEEEEECCcCeecCcHhHHHHHHhCCCCCccchhhcCccccEecCCEeceEEEEEecccCCCeEEEEECCCCccChhhH
Confidence 899999999999998665544443321 112344568999999999
Q ss_pred hHHHHHHHHHHHH
Q 034686 72 PQKLCDCLSQISL 84 (87)
Q Consensus 72 p~~~~~~l~~~~~ 84 (87)
|++..++|..|+.
T Consensus 445 P~~~~~~i~~fl~ 457 (462)
T PTZ00472 445 PAVALTMINRFLR 457 (462)
T ss_pred HHHHHHHHHHHHc
Confidence 9999999999874
No 75
>PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family. It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A.
Probab=96.06 E-value=0.0065 Score=39.99 Aligned_cols=45 Identities=18% Similarity=0.208 Sum_probs=30.2
Q ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhCCC-CcEEEecCCCCccCCc
Q 034686 25 GSVKRVYLVCEEDIGLPKHFQHWMIQNYPV-NEVMEIKGGDHMAMLS 70 (87)
Q Consensus 25 ~~~P~~~i~g~~D~~~p~~~~~~~~~~~~~-~~~~~l~~aGH~p~l~ 70 (87)
-++|++.|+|++|.+++.+..+.+++...+ .+++..+ .||.....
T Consensus 160 i~iPtlHv~G~~D~~~~~~~s~~L~~~~~~~~~v~~h~-gGH~vP~~ 205 (212)
T PF03959_consen 160 ISIPTLHVIGENDPVVPPERSEALAEMFDPDARVIEHD-GGHHVPRK 205 (212)
T ss_dssp ---EEEEEEETT-SSS-HHHHHHHHHHHHHHEEEEEES-SSSS----
T ss_pred CCCCeEEEEeCCCCCcchHHHHHHHHhccCCcEEEEEC-CCCcCcCC
Confidence 369999999999999998887777777655 6777777 89986654
No 76
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=96.04 E-value=0.045 Score=35.62 Aligned_cols=47 Identities=17% Similarity=0.002 Sum_probs=30.8
Q ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhC----CCCcEEEecCCCCccCCcC
Q 034686 25 GSVKRVYLVCEEDIGLPKHFQHWMIQNY----PVNEVMEIKGGDHMAMLSE 71 (87)
Q Consensus 25 ~~~P~~~i~g~~D~~~p~~~~~~~~~~~----~~~~~~~l~~aGH~p~l~~ 71 (87)
.++|+++++|++|..++.+....+.+.+ ...++++++|++|.=+-..
T Consensus 144 ~~~P~l~~~g~~D~~~~~~~~~~~~~~l~~~~~~~~~~~y~ga~HgF~~~~ 194 (218)
T PF01738_consen 144 IKAPVLILFGENDPFFPPEEVEALEEALKAAGVDVEVHVYPGAGHGFANPS 194 (218)
T ss_dssp --S-EEEEEETT-TTS-HHHHHHHHHHHHCTTTTEEEEEETT--TTTTSTT
T ss_pred cCCCEeecCccCCCCCChHHHHHHHHHHHhcCCcEEEEECCCCcccccCCC
Confidence 4589999999999999988654444433 4678999999999866644
No 77
>PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B.
Probab=96.00 E-value=0.027 Score=37.25 Aligned_cols=42 Identities=17% Similarity=0.176 Sum_probs=25.4
Q ss_pred CcceEEEEeCCCCCCCHHHHH-HHHHhC-----C-CCcEEEecCCCCcc
Q 034686 26 SVKRVYLVCEEDIGLPKHFQH-WMIQNY-----P-VNEVMEIKGGDHMA 67 (87)
Q Consensus 26 ~~P~~~i~g~~D~~~p~~~~~-~~~~~~-----~-~~~~~~l~~aGH~p 67 (87)
+.|.++|.|++|.+.|..... .+.+++ + ..+...++++||..
T Consensus 115 ~~piLli~g~dD~~WpS~~~a~~i~~rL~~~~~~~~~~~l~Y~~aGH~i 163 (213)
T PF08840_consen 115 KGPILLISGEDDQIWPSSEMAEQIEERLKAAGFPHNVEHLSYPGAGHLI 163 (213)
T ss_dssp -SEEEEEEETT-SSS-HHHHHHHHHHHHHCTT-----EEEEETTB-S--
T ss_pred CCCEEEEEeCCCCccchHHHHHHHHHHHHHhCCCCcceEEEcCCCCcee
Confidence 489999999999999876554 333322 2 35677799999985
No 78
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=95.99 E-value=0.015 Score=41.45 Aligned_cols=60 Identities=15% Similarity=0.147 Sum_probs=44.2
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHH-hCCCCcEEEecCCCCccCCc----ChH-HHHHHHHHHHHHh
Q 034686 27 VKRVYLVCEEDIGLPKHFQHWMIQ-NYPVNEVMEIKGGDHMAMLS----EPQ-KLCDCLSQISLKY 86 (87)
Q Consensus 27 ~P~~~i~g~~D~~~p~~~~~~~~~-~~~~~~~~~l~~aGH~p~l~----~p~-~~~~~l~~~~~~~ 86 (87)
+|+++|++.+|.+++++..-.... ..|...+..-+-.||..++. +|. ..-+.+.+|++.|
T Consensus 275 ~PtLii~A~DDP~~~~~~iP~~~~~~np~v~l~~t~~GGHvGfl~~~~~~~~~W~~~ri~~~l~~~ 340 (345)
T COG0429 275 KPTLIINAKDDPFMPPEVIPKLQEMLNPNVLLQLTEHGGHVGFLGGKLLHPQMWLEQRILDWLDPF 340 (345)
T ss_pred cceEEEecCCCCCCChhhCCcchhcCCCceEEEeecCCceEEeccCccccchhhHHHHHHHHHHHH
Confidence 899999999999999977754444 56676766666789999998 443 5555666665543
No 79
>COG1073 Hydrolases of the alpha/beta superfamily [General function prediction only]
Probab=95.74 E-value=0.059 Score=35.50 Aligned_cols=59 Identities=15% Similarity=0.223 Sum_probs=43.1
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHHhCCC--CcEEEecCCCCccCCcChH---HHHHHHHHHHHH
Q 034686 27 VKRVYLVCEEDIGLPKHFQHWMIQNYPV--NEVMEIKGGDHMAMLSEPQ---KLCDCLSQISLK 85 (87)
Q Consensus 27 ~P~~~i~g~~D~~~p~~~~~~~~~~~~~--~~~~~l~~aGH~p~l~~p~---~~~~~l~~~~~~ 85 (87)
.|.+++.|..|..+|...+......... .+...+++++|......+. +..+.+.+|+.+
T Consensus 233 ~P~l~~~G~~D~~vp~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~f~~~ 296 (299)
T COG1073 233 RPVLLVHGERDEVVPLRDAEDLYEAARERPKKLLFVPGGGHIDLYDNPPAVEQALDKLAEFLER 296 (299)
T ss_pred cceEEEecCCCcccchhhhHHHHhhhccCCceEEEecCCccccccCccHHHHHHHHHHHHHHHH
Confidence 7999999999999999888766665543 4666778899998865544 444455555443
No 80
>COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism]
Probab=95.73 E-value=0.023 Score=41.65 Aligned_cols=48 Identities=17% Similarity=0.032 Sum_probs=38.7
Q ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCccCCcCh
Q 034686 25 GSVKRVYLVCEEDIGLPKHFQHWMIQNYPVNEVMEIKGGDHMAMLSEP 72 (87)
Q Consensus 25 ~~~P~~~i~g~~D~~~p~~~~~~~~~~~~~~~~~~l~~aGH~p~l~~p 72 (87)
..+|++.+.+++|++.|.+.....+...++...+++-++||...+-+|
T Consensus 329 It~pvy~~a~~~DhI~P~~Sv~~g~~l~~g~~~f~l~~sGHIa~vVN~ 376 (445)
T COG3243 329 ITCPVYNLAAEEDHIAPWSSVYLGARLLGGEVTFVLSRSGHIAGVVNP 376 (445)
T ss_pred cccceEEEeecccccCCHHHHHHHHHhcCCceEEEEecCceEEEEeCC
Confidence 348999999999999999988888787777444455569999887663
No 81
>PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A ....
Probab=95.73 E-value=0.024 Score=40.08 Aligned_cols=58 Identities=12% Similarity=0.120 Sum_probs=43.2
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHHhCC--------------------------CCcEEEecCCCCccCCcChHHHHHHHH
Q 034686 27 VKRVYLVCEEDIGLPKHFQHWMIQNYP--------------------------VNEVMEIKGGDHMAMLSEPQKLCDCLS 80 (87)
Q Consensus 27 ~P~~~i~g~~D~~~p~~~~~~~~~~~~--------------------------~~~~~~l~~aGH~p~l~~p~~~~~~l~ 80 (87)
+++++..|..|.++|..-.+...+.+. +..+..+.||||++..++|++..++|.
T Consensus 331 irVLiy~Gd~D~i~n~~Gt~~~i~~L~w~~~~~f~~~~~~~~~~~~G~~k~~~~ltf~~V~~AGHmvP~dqP~~a~~m~~ 410 (415)
T PF00450_consen 331 IRVLIYNGDLDLICNFLGTERWIDNLNWSGKDGFRQWPRKVNGQVAGYVKQYGNLTFVTVRGAGHMVPQDQPEAALQMFR 410 (415)
T ss_dssp -EEEEEEETT-SSS-HHHHHHHHHCTECTEEEEEEEEEEETTCSEEEEEEEETTEEEEEETT--SSHHHHSHHHHHHHHH
T ss_pred ceeEEeccCCCEEEEeccchhhhhccccCcccccccccccccccccceeEEeccEEEEEEcCCcccChhhCHHHHHHHHH
Confidence 899999999999999887776666642 112566778999999999999999999
Q ss_pred HHHH
Q 034686 81 QISL 84 (87)
Q Consensus 81 ~~~~ 84 (87)
+|++
T Consensus 411 ~fl~ 414 (415)
T PF00450_consen 411 RFLK 414 (415)
T ss_dssp HHHC
T ss_pred HHhc
Confidence 9875
No 82
>PF10142 PhoPQ_related: PhoPQ-activated pathogenicity-related protein; InterPro: IPR009199 Proteins in this entry are believed to play a role in virulence/pathogenicity in Salmonella. Salmonella typhi PqaA has been shown to be activated by PhoP/Q two-component regulatory system, which regulates many virulence genes []. It has been also shown to confer resistance to antimicrobial peptides (melittin) []. Members of this family are predicted to belong to the alpha/beta hydrolase domain superfamily.
Probab=95.69 E-value=0.031 Score=40.24 Aligned_cols=56 Identities=7% Similarity=0.070 Sum_probs=44.8
Q ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhCCC-CcEEEecCCCCccCCcChHHHHHHHHHHHH
Q 034686 26 SVKRVYLVCEEDIGLPKHFQHWMIQNYPV-NEVMEIKGGDHMAMLSEPQKLCDCLSQISL 84 (87)
Q Consensus 26 ~~P~~~i~g~~D~~~p~~~~~~~~~~~~~-~~~~~l~~aGH~p~l~~p~~~~~~l~~~~~ 84 (87)
.+|+++|.|+.|....++....+-+.+++ ..+..+||+||..-. ..+...|..|..
T Consensus 262 ~~PK~ii~atgDeFf~pD~~~~y~d~L~G~K~lr~vPN~~H~~~~---~~~~~~l~~f~~ 318 (367)
T PF10142_consen 262 TMPKYIINATGDEFFVPDSSNFYYDKLPGEKYLRYVPNAGHSLIG---SDVVQSLRAFYN 318 (367)
T ss_pred CccEEEEecCCCceeccCchHHHHhhCCCCeeEEeCCCCCcccch---HHHHHHHHHHHH
Confidence 69999999999999999998888898886 456679999999777 444444555544
No 83
>COG0400 Predicted esterase [General function prediction only]
Probab=95.50 E-value=0.036 Score=36.86 Aligned_cols=58 Identities=16% Similarity=0.043 Sum_probs=42.2
Q ss_pred cccCCcceEEEEeCCCCCCCHHHHHHHHHhCC----CCcEEEecCCCCccCCcChHHHHHHHH
Q 034686 22 EGYGSVKRVYLVCEEDIGLPKHFQHWMIQNYP----VNEVMEIKGGDHMAMLSEPQKLCDCLS 80 (87)
Q Consensus 22 ~~~~~~P~~~i~g~~D~~~p~~~~~~~~~~~~----~~~~~~l~~aGH~p~l~~p~~~~~~l~ 80 (87)
......|++.++|++|.++|.....+..+.+. ..++..++ .||....+.-++..+.+.
T Consensus 142 ~~~~~~pill~hG~~Dpvvp~~~~~~l~~~l~~~g~~v~~~~~~-~GH~i~~e~~~~~~~wl~ 203 (207)
T COG0400 142 PDLAGTPILLSHGTEDPVVPLALAEALAEYLTASGADVEVRWHE-GGHEIPPEELEAARSWLA 203 (207)
T ss_pred cccCCCeEEEeccCcCCccCHHHHHHHHHHHHHcCCCEEEEEec-CCCcCCHHHHHHHHHHHH
Confidence 34566899999999999999988876665542 34666677 899987666555555443
No 84
>PLN02442 S-formylglutathione hydrolase
Probab=95.20 E-value=0.079 Score=36.28 Aligned_cols=54 Identities=15% Similarity=-0.005 Sum_probs=35.1
Q ss_pred CCcceEEEEeCCCCCCCHH-----HHHHHHHhCCCCcEEEecCCCCccCCcChHHHHHHHHHHH
Q 034686 25 GSVKRVYLVCEEDIGLPKH-----FQHWMIQNYPVNEVMEIKGGDHMAMLSEPQKLCDCLSQIS 83 (87)
Q Consensus 25 ~~~P~~~i~g~~D~~~p~~-----~~~~~~~~~~~~~~~~l~~aGH~p~l~~p~~~~~~l~~~~ 83 (87)
..+|+++++|++|..++.. ....+.+.-...++.+++|.+|.-+ .+...|.+.+
T Consensus 216 ~~~pvli~~G~~D~~v~~~~~s~~~~~~l~~~g~~~~~~~~pg~~H~~~-----~~~~~i~~~~ 274 (283)
T PLN02442 216 VSATILIDQGEADKFLKEQLLPENFEEACKEAGAPVTLRLQPGYDHSYF-----FIATFIDDHI 274 (283)
T ss_pred cCCCEEEEECCCCccccccccHHHHHHHHHHcCCCeEEEEeCCCCccHH-----HHHHHHHHHH
Confidence 3489999999999998852 2222222222467888998899855 4455554443
No 85
>COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only]
Probab=94.96 E-value=0.052 Score=35.49 Aligned_cols=40 Identities=10% Similarity=0.206 Sum_probs=33.6
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCcc
Q 034686 27 VKRVYLVCEEDIGLPKHFQHWMIQNYPVNEVMEIKGGDHMA 67 (87)
Q Consensus 27 ~P~~~i~g~~D~~~p~~~~~~~~~~~~~~~~~~l~~aGH~p 67 (87)
.|.++|..++|..++.+.+..+++.++. .++.+.++||.-
T Consensus 118 fps~vvaSrnDp~~~~~~a~~~a~~wgs-~lv~~g~~GHiN 157 (181)
T COG3545 118 FPSVVVASRNDPYVSYEHAEDLANAWGS-ALVDVGEGGHIN 157 (181)
T ss_pred CceeEEEecCCCCCCHHHHHHHHHhccH-hheecccccccc
Confidence 7899999999999999999999988865 556666688863
No 86
>KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only]
Probab=94.96 E-value=0.04 Score=37.70 Aligned_cols=61 Identities=10% Similarity=0.125 Sum_probs=44.2
Q ss_pred cCCcceEEEEeCCCCCCCHHHHHHHHHhCCC--CcEEEecCCCCccCCcChHHHHHHHHHHHHH
Q 034686 24 YGSVKRVYLVCEEDIGLPKHFQHWMIQNYPV--NEVMEIKGGDHMAMLSEPQKLCDCLSQISLK 85 (87)
Q Consensus 24 ~~~~P~~~i~g~~D~~~p~~~~~~~~~~~~~--~~~~~l~~aGH~p~l~~p~~~~~~l~~~~~~ 85 (87)
-.++|.++|.|.+|.++|+...+.+-...|. .++.++|++.|---+-. |-.-.+|.+|+.+
T Consensus 219 ~~~~P~LFiSGlkDelVPP~~Mr~Ly~~c~S~~Krl~eFP~gtHNDT~i~-dGYfq~i~dFlaE 281 (300)
T KOG4391|consen 219 QCRMPFLFISGLKDELVPPVMMRQLYELCPSRTKRLAEFPDGTHNDTWIC-DGYFQAIEDFLAE 281 (300)
T ss_pred cccCceEEeecCccccCCcHHHHHHHHhCchhhhhheeCCCCccCceEEe-ccHHHHHHHHHHH
Confidence 3448999999999999999998888787763 57889999998643322 3344455555544
No 87
>TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some
Probab=94.67 E-value=0.073 Score=38.82 Aligned_cols=63 Identities=11% Similarity=0.019 Sum_probs=46.2
Q ss_pred ccCCcceEEEEeCCCCCCCHHHHHHHHHh---CCC--CcEEEecCCCCccCCcC---hHHHHHHHHHHHHH
Q 034686 23 GYGSVKRVYLVCEEDIGLPKHFQHWMIQN---YPV--NEVMEIKGGDHMAMLSE---PQKLCDCLSQISLK 85 (87)
Q Consensus 23 ~~~~~P~~~i~g~~D~~~p~~~~~~~~~~---~~~--~~~~~l~~aGH~p~l~~---p~~~~~~l~~~~~~ 85 (87)
..+++|.+.|.|++|.++|+.......+. .+. .+.++.+++||...+.= .+++...|.+|+.+
T Consensus 335 ~I~~~pll~V~ge~D~I~p~~qt~aa~~l~~~~~s~~k~~~~~~~~GH~Gvf~G~r~~~~i~P~i~~wl~~ 405 (406)
T TIGR01849 335 AITRVALLTVEGENDDISGLGQTKAALRLCTGIPEDMKRHHLQPGVGHYGVFSGSRFREEIYPLVREFIRR 405 (406)
T ss_pred HCcccceEEEeccCCCcCCHHHhHHHHHHhhcCChhhceEeecCCCCeEEEeeChhhhhhhchHHHHHHHh
Confidence 45559999999999999999988776665 342 33555657999987743 56666777777664
No 88
>KOG2564 consensus Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=94.61 E-value=0.03 Score=39.44 Aligned_cols=57 Identities=14% Similarity=0.138 Sum_probs=43.1
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCccCCcChHHHHHHHHHHHHHh
Q 034686 27 VKRVYLVCEEDIGLPKHFQHWMIQNYPVNEVMEIKGGDHMAMLSEPQKLCDCLSQISLKY 86 (87)
Q Consensus 27 ~P~~~i~g~~D~~~p~~~~~~~~~~~~~~~~~~l~~aGH~p~l~~p~~~~~~l~~~~~~~ 86 (87)
+|++.|....|++--.=....| -...++.+++.+||+.+.+.|.++++.+..|..+.
T Consensus 271 ~~klLilAg~d~LDkdLtiGQM---QGk~Q~~vL~~~GH~v~ED~P~kva~~~~~f~~Rn 327 (343)
T KOG2564|consen 271 VPKLLILAGVDRLDKDLTIGQM---QGKFQLQVLPLCGHFVHEDSPHKVAECLCVFWIRN 327 (343)
T ss_pred ccceeEEecccccCcceeeeee---ccceeeeeecccCceeccCCcchHHHHHHHHHhhh
Confidence 7888888888776421111111 24568889999999999999999999999987664
No 89
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=94.29 E-value=0.15 Score=38.73 Aligned_cols=48 Identities=8% Similarity=-0.020 Sum_probs=36.4
Q ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCccCCcCh
Q 034686 25 GSVKRVYLVCEEDIGLPKHFQHWMIQNYPVNEVMEIKGGDHMAMLSEP 72 (87)
Q Consensus 25 ~~~P~~~i~g~~D~~~p~~~~~~~~~~~~~~~~~~l~~aGH~p~l~~p 72 (87)
.++|++.|.|+.|+++|.+......+..+....+++-++||..=+-+|
T Consensus 440 I~~Pvl~va~~~DHIvPw~s~~~~~~l~gs~~~fvl~~gGHIggivnp 487 (560)
T TIGR01839 440 VKCDSFSVAGTNDHITPWDAVYRSALLLGGKRRFVLSNSGHIQSILNP 487 (560)
T ss_pred CCCCeEEEecCcCCcCCHHHHHHHHHHcCCCeEEEecCCCccccccCC
Confidence 348999999999999999999888887764333444459998655443
No 90
>PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3. Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A.
Probab=94.27 E-value=0.22 Score=34.80 Aligned_cols=58 Identities=9% Similarity=0.080 Sum_probs=41.7
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHHhCC--CCcEEEecCCCCccCCcChHHHHHHHHHHHHHh
Q 034686 27 VKRVYLVCEEDIGLPKHFQHWMIQNYP--VNEVMEIKGGDHMAMLSEPQKLCDCLSQISLKY 86 (87)
Q Consensus 27 ~P~~~i~g~~D~~~p~~~~~~~~~~~~--~~~~~~l~~aGH~p~l~~p~~~~~~l~~~~~~~ 86 (87)
+|++.|.|+.-.. .+....|.++.. .+++..+++||=+++.|+|+++++.+.=|++.+
T Consensus 220 c~vLlvvG~~Sp~--~~~vv~~ns~Ldp~~ttllkv~dcGglV~eEqP~klaea~~lFlQG~ 279 (283)
T PF03096_consen 220 CPVLLVVGDNSPH--VDDVVEMNSKLDPTKTTLLKVADCGGLVLEEQPGKLAEAFKLFLQGM 279 (283)
T ss_dssp S-EEEEEETTSTT--HHHHHHHHHHS-CCCEEEEEETT-TT-HHHH-HHHHHHHHHHHHHHT
T ss_pred CCeEEEEecCCcc--hhhHHHHHhhcCcccceEEEecccCCcccccCcHHHHHHHHHHHccC
Confidence 8999999976444 444556777763 467778899999999999999999998887753
No 91
>PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F ....
Probab=94.23 E-value=0.13 Score=36.29 Aligned_cols=60 Identities=13% Similarity=-0.082 Sum_probs=38.3
Q ss_pred ccCCcceEEEEeCCCCCCCHHHHHHHHHhCC-CCcEEEecCCCCccCCcChHHHHHHHHHHHHH
Q 034686 23 GYGSVKRVYLVCEEDIGLPKHFQHWMIQNYP-VNEVMEIKGGDHMAMLSEPQKLCDCLSQISLK 85 (87)
Q Consensus 23 ~~~~~P~~~i~g~~D~~~p~~~~~~~~~~~~-~~~~~~l~~aGH~p~l~~p~~~~~~l~~~~~~ 85 (87)
++.++|+++-+|-.|.++|+..+-..-+.++ ..++.+++..||...-+. -.+...+|+.+
T Consensus 259 ~ri~~pvl~~~gl~D~~cPP~t~fA~yN~i~~~K~l~vyp~~~He~~~~~---~~~~~~~~l~~ 319 (320)
T PF05448_consen 259 RRIKCPVLFSVGLQDPVCPPSTQFAAYNAIPGPKELVVYPEYGHEYGPEF---QEDKQLNFLKE 319 (320)
T ss_dssp GG--SEEEEEEETT-SSS-HHHHHHHHCC--SSEEEEEETT--SSTTHHH---HHHHHHHHHHH
T ss_pred HHcCCCEEEEEecCCCCCCchhHHHHHhccCCCeeEEeccCcCCCchhhH---HHHHHHHHHhc
Confidence 4566999999999999999999988888876 468889998999754332 13444444443
No 92
>PLN02213 sinapoylglucose-malate O-sinapoyltransferase/ carboxypeptidase
Probab=94.13 E-value=0.28 Score=34.30 Aligned_cols=58 Identities=17% Similarity=0.177 Sum_probs=43.1
Q ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhCC------------------------C-CcEEEecCCCCccCCcChHHHHHHHH
Q 034686 26 SVKRVYLVCEEDIGLPKHFQHWMIQNYP------------------------V-NEVMEIKGGDHMAMLSEPQKLCDCLS 80 (87)
Q Consensus 26 ~~P~~~i~g~~D~~~p~~~~~~~~~~~~------------------------~-~~~~~l~~aGH~p~l~~p~~~~~~l~ 80 (87)
.+++++-.|..|.+++.--.+...+.+. + ..+..+-||||++. .+|++.-+++.
T Consensus 233 ~i~VliY~Gd~D~icn~~g~~~wi~~L~w~~~~~~~~w~~~~~~~G~vk~y~~~ltf~~V~~AGHmV~-~qP~~al~m~~ 311 (319)
T PLN02213 233 GYRSLIYSGDHDIAVPFLATQAWIRSLNYSPIHNWRPWMINNQIAGYTRAYSNKMTFATIKAGGHTAE-YRPNETFIMFQ 311 (319)
T ss_pred CceEEEEECCcCeeCCcHhHHHHHHhcCCCCCCCCccccCCCEeeeEEEEecCcceEEEEcCCCCCCC-cCHHHHHHHHH
Confidence 4899999999999998765554444432 0 22344557999996 59999999999
Q ss_pred HHHH
Q 034686 81 QISL 84 (87)
Q Consensus 81 ~~~~ 84 (87)
.|+.
T Consensus 312 ~fi~ 315 (319)
T PLN02213 312 RWIS 315 (319)
T ss_pred HHHc
Confidence 9875
No 93
>KOG3253 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=93.83 E-value=0.46 Score=36.77 Aligned_cols=60 Identities=12% Similarity=0.159 Sum_probs=47.0
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHHhCC-CCcEEEecCCCCccCCcC---------hHHHHHHHHHHHHHh
Q 034686 27 VKRVYLVCEEDIGLPKHFQHWMIQNYP-VNEVMEIKGGDHMAMLSE---------PQKLCDCLSQISLKY 86 (87)
Q Consensus 27 ~P~~~i~g~~D~~~p~~~~~~~~~~~~-~~~~~~l~~aGH~p~l~~---------p~~~~~~l~~~~~~~ 86 (87)
.|++||.|..|..++++..+.+.++.. ..+++++++++|..=+.. -.++...+.+++.+|
T Consensus 305 ~PVLFV~Gsnd~mcspn~ME~vreKMqA~~elhVI~~adhsmaipk~k~esegltqseVd~~i~~aI~ef 374 (784)
T KOG3253|consen 305 QPVLFVIGSNDHMCSPNSMEEVREKMQAEVELHVIGGADHSMAIPKRKVESEGLTQSEVDSAIAQAIKEF 374 (784)
T ss_pred CceEEEecCCcccCCHHHHHHHHHHhhccceEEEecCCCccccCCccccccccccHHHHHHHHHHHHHHH
Confidence 799999999999999999998888875 468899999999876543 345555666555554
No 94
>KOG1455 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=93.74 E-value=0.21 Score=35.26 Aligned_cols=58 Identities=12% Similarity=-0.006 Sum_probs=44.4
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHHhCC--CCcEEEecCCCCccCCcCh----HHHHHHHHHHHH
Q 034686 27 VKRVYLVCEEDIGLPKHFQHWMIQNYP--VNEVMEIKGGDHMAMLSEP----QKLCDCLSQISL 84 (87)
Q Consensus 27 ~P~~~i~g~~D~~~p~~~~~~~~~~~~--~~~~~~l~~aGH~p~l~~p----~~~~~~l~~~~~ 84 (87)
+|.++++|+.|.+..++..+.+-+..+ ..++..+||.=|+...-.| +.+...|..|+.
T Consensus 247 vPflilHG~dD~VTDp~~Sk~Lye~A~S~DKTlKlYpGm~H~Ll~gE~~en~e~Vf~DI~~Wl~ 310 (313)
T KOG1455|consen 247 VPFLILHGTDDKVTDPKVSKELYEKASSSDKTLKLYPGMWHSLLSGEPDENVEIVFGDIISWLD 310 (313)
T ss_pred ccEEEEecCCCcccCcHHHHHHHHhccCCCCceeccccHHHHhhcCCCchhHHHHHHHHHHHHH
Confidence 899999999999999999988888765 4688899999999886333 334444444543
No 95
>PF04301 DUF452: Protein of unknown function (DUF452); InterPro: IPR007398 This is a family of uncharacterised proteins.
Probab=93.72 E-value=0.11 Score=34.86 Aligned_cols=37 Identities=19% Similarity=0.249 Sum_probs=28.5
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCccCC
Q 034686 30 VYLVCEEDIGLPKHFQHWMIQNYPVNEVMEIKGGDHMAML 69 (87)
Q Consensus 30 ~~i~g~~D~~~p~~~~~~~~~~~~~~~~~~l~~aGH~p~l 69 (87)
-.|.|++|.++|++.|+..=+.. ..+..++ +||.|+.
T Consensus 169 ~aiIg~~D~IFpp~nQ~~~W~~~--~~~~~~~-~~Hy~F~ 205 (213)
T PF04301_consen 169 KAIIGKKDRIFPPENQKRAWQGR--CTIVEID-APHYPFF 205 (213)
T ss_pred EEEEcCCCEEeCHHHHHHHHhCc--CcEEEec-CCCcCch
Confidence 47889999999999997654432 3566776 9999974
No 96
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=93.71 E-value=0.26 Score=32.86 Aligned_cols=55 Identities=15% Similarity=0.071 Sum_probs=40.8
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCccCCcChHHHHHHHHHHH
Q 034686 27 VKRVYLVCEEDIGLPKHFQHWMIQNYPVNEVMEIKGGDHMAMLSEPQKLCDCLSQIS 83 (87)
Q Consensus 27 ~P~~~i~g~~D~~~p~~~~~~~~~~~~~~~~~~l~~aGH~p~l~~p~~~~~~l~~~~ 83 (87)
.|.++|.|+.|.+++......-.+. ...+++++++++|+-+ -+-+++.+.+.+++
T Consensus 150 ~~~lvi~g~~Ddvv~l~~~l~~~~~-~~~~~i~i~~a~HFF~-gKl~~l~~~i~~~l 204 (210)
T COG2945 150 SPGLVIQGDADDVVDLVAVLKWQES-IKITVITIPGADHFFH-GKLIELRDTIADFL 204 (210)
T ss_pred CCceeEecChhhhhcHHHHHHhhcC-CCCceEEecCCCceec-ccHHHHHHHHHHHh
Confidence 6899999999999887776655554 3447778889999854 44566777777665
No 97
>KOG1551 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.64 E-value=0.21 Score=35.17 Aligned_cols=57 Identities=18% Similarity=0.199 Sum_probs=48.2
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCc-cCCcChHHHHHHHHHHHHHh
Q 034686 29 RVYLVCEEDIGLPKHFQHWMIQNYPVNEVMEIKGGDHM-AMLSEPQKLCDCLSQISLKY 86 (87)
Q Consensus 29 ~~~i~g~~D~~~p~~~~~~~~~~~~~~~~~~l~~aGH~-p~l~~p~~~~~~l~~~~~~~ 86 (87)
+.++.+++|.-+|..--+.+.+.+|+.++..++ .||. .++..-+.+-+.|.+-+.+.
T Consensus 309 ~ivv~A~~D~Yipr~gv~~lQ~~WPg~eVr~~e-gGHVsayl~k~dlfRR~I~d~L~R~ 366 (371)
T KOG1551|consen 309 IIVVQAKEDAYIPRTGVRSLQEIWPGCEVRYLE-GGHVSAYLFKQDLFRRAIVDGLDRL 366 (371)
T ss_pred EEEEEecCCccccccCcHHHHHhCCCCEEEEee-cCceeeeehhchHHHHHHHHHHHhh
Confidence 677888999999886667777889999999999 8997 88899999999998877653
No 98
>PLN02209 serine carboxypeptidase
Probab=92.94 E-value=0.57 Score=34.48 Aligned_cols=58 Identities=17% Similarity=0.220 Sum_probs=43.7
Q ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhCC------------------------C-CcEEEecCCCCccCCcChHHHHHHHH
Q 034686 26 SVKRVYLVCEEDIGLPKHFQHWMIQNYP------------------------V-NEVMEIKGGDHMAMLSEPQKLCDCLS 80 (87)
Q Consensus 26 ~~P~~~i~g~~D~~~p~~~~~~~~~~~~------------------------~-~~~~~l~~aGH~p~l~~p~~~~~~l~ 80 (87)
.+++++..|..|.+++..-.+...+.+. + .++..+-||||+.. .+|++.-.++.
T Consensus 351 girVLiY~GD~D~icn~~Gte~wi~~L~w~~~~~~~~w~~~~q~aG~vk~y~n~Ltfv~V~~AGHmVp-~qP~~al~m~~ 429 (437)
T PLN02209 351 GYRSLIFSGDHDITMPFQATQAWIKSLNYSIIDDWRPWMIKGQIAGYTRTYSNKMTFATVKGGGHTAE-YLPEESSIMFQ 429 (437)
T ss_pred CceEEEEECCccccCCcHhHHHHHHhcCCccCCCeeeeEECCEeeeEEEEeCCceEEEEEcCCCCCcC-cCHHHHHHHHH
Confidence 3799999999999998765555444432 1 22444667999996 59999999999
Q ss_pred HHHH
Q 034686 81 QISL 84 (87)
Q Consensus 81 ~~~~ 84 (87)
+|+.
T Consensus 430 ~fi~ 433 (437)
T PLN02209 430 RWIS 433 (437)
T ss_pred HHHc
Confidence 9875
No 99
>PLN03016 sinapoylglucose-malate O-sinapoyltransferase
Probab=92.41 E-value=0.79 Score=33.68 Aligned_cols=58 Identities=17% Similarity=0.177 Sum_probs=44.2
Q ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhCC------------------------C-CcEEEecCCCCccCCcChHHHHHHHH
Q 034686 26 SVKRVYLVCEEDIGLPKHFQHWMIQNYP------------------------V-NEVMEIKGGDHMAMLSEPQKLCDCLS 80 (87)
Q Consensus 26 ~~P~~~i~g~~D~~~p~~~~~~~~~~~~------------------------~-~~~~~l~~aGH~p~l~~p~~~~~~l~ 80 (87)
.+++++..|..|.++|..-.+...+.+. + .++..+-||||+.. .+|++.-.++.
T Consensus 347 ~irVLiY~Gd~D~icn~~Gt~~wi~~L~w~~~~~~~~w~~~~~~~G~vk~y~n~ltfv~V~~AGHmVp-~qP~~al~m~~ 425 (433)
T PLN03016 347 GYRSLIYSGDHDIAVPFLATQAWIRSLNYSPIHNWRPWMINNQIAGYTRAYSNKMTFATIKAGGHTAE-YRPNETFIMFQ 425 (433)
T ss_pred CceEEEEECCccccCCcHhHHHHHHhCCCCCCCCcccccCCCEeeeEEEEeCCceEEEEEcCCCCCCC-CCHHHHHHHHH
Confidence 4899999999999998776665555432 0 12445667999996 59999999999
Q ss_pred HHHH
Q 034686 81 QISL 84 (87)
Q Consensus 81 ~~~~ 84 (87)
.|+.
T Consensus 426 ~Fi~ 429 (433)
T PLN03016 426 RWIS 429 (433)
T ss_pred HHHc
Confidence 9875
No 100
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=91.92 E-value=0.37 Score=32.69 Aligned_cols=43 Identities=14% Similarity=-0.009 Sum_probs=28.6
Q ss_pred cceEEEEeCCCCCCCHH-----HHHHHHHhCCCCcEEEecCCCCccCC
Q 034686 27 VKRVYLVCEEDIGLPKH-----FQHWMIQNYPVNEVMEIKGGDHMAML 69 (87)
Q Consensus 27 ~P~~~i~g~~D~~~p~~-----~~~~~~~~~~~~~~~~l~~aGH~p~l 69 (87)
.|.++++|+.|..+|.+ ....+.+.--..++.+++|++|.-..
T Consensus 212 ~plli~~G~~D~~v~~~~~~~~~~~~l~~~g~~v~~~~~~g~~H~f~~ 259 (275)
T TIGR02821 212 STILIDQGTADQFLDEQLRPDAFEQACRAAGQALTLRRQAGYDHSYYF 259 (275)
T ss_pred CCeeEeecCCCcccCccccHHHHHHHHHHcCCCeEEEEeCCCCccchh
Confidence 57777799999999873 22222222224577888999998543
No 101
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=91.73 E-value=0.57 Score=34.33 Aligned_cols=46 Identities=17% Similarity=0.192 Sum_probs=34.9
Q ss_pred CcceEEEEeCCCCCCCHHHH-HHHHHhCCCCcEEEecCCCCccCCcC
Q 034686 26 SVKRVYLVCEEDIGLPKHFQ-HWMIQNYPVNEVMEIKGGDHMAMLSE 71 (87)
Q Consensus 26 ~~P~~~i~g~~D~~~p~~~~-~~~~~~~~~~~~~~l~~aGH~p~l~~ 71 (87)
.+|+++|.+.+|.++|.+.. ...+.+.|+.-+.+-.-.||..+++.
T Consensus 322 ~VP~L~ina~DDPv~p~~~ip~~~~~~np~v~l~~T~~GGHlgfleg 368 (409)
T KOG1838|consen 322 KVPLLCINAADDPVVPEEAIPIDDIKSNPNVLLVITSHGGHLGFLEG 368 (409)
T ss_pred cccEEEEecCCCCCCCcccCCHHHHhcCCcEEEEEeCCCceeeeecc
Confidence 38999999999999998655 55566667544444445799999987
No 102
>KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only]
Probab=90.94 E-value=0.58 Score=31.93 Aligned_cols=55 Identities=18% Similarity=0.190 Sum_probs=39.4
Q ss_pred cccCCcceEEEEeCCCCCCCHHHHHHHHHh---CCC--CcEEEecCCCCccC-----CcChHHHH
Q 034686 22 EGYGSVKRVYLVCEEDIGLPKHFQHWMIQN---YPV--NEVMEIKGGDHMAM-----LSEPQKLC 76 (87)
Q Consensus 22 ~~~~~~P~~~i~g~~D~~~p~~~~~~~~~~---~~~--~~~~~l~~aGH~p~-----l~~p~~~~ 76 (87)
..-.+.|++++.++.|..+|++.....-+. .+. +++.+++|-||-=+ ++.|+.-.
T Consensus 160 ~~~vk~Pilfl~ae~D~~~p~~~v~~~ee~lk~~~~~~~~v~~f~g~~HGf~~~r~~~~~Ped~~ 224 (242)
T KOG3043|consen 160 IANVKAPILFLFAELDEDVPPKDVKAWEEKLKENPAVGSQVKTFSGVGHGFVARRANISSPEDKK 224 (242)
T ss_pred HhcCCCCEEEEeecccccCCHHHHHHHHHHHhcCcccceeEEEcCCccchhhhhccCCCChhHHH
Confidence 334458999999999999998877654444 333 46889999899644 56676543
No 103
>PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases. Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process
Probab=90.79 E-value=0.56 Score=32.47 Aligned_cols=51 Identities=20% Similarity=0.258 Sum_probs=37.2
Q ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhC---C--CCcEEEecCCCCccC--CcChHHH
Q 034686 25 GSVKRVYLVCEEDIGLPKHFQHWMIQNY---P--VNEVMEIKGGDHMAM--LSEPQKL 75 (87)
Q Consensus 25 ~~~P~~~i~g~~D~~~p~~~~~~~~~~~---~--~~~~~~l~~aGH~p~--l~~p~~~ 75 (87)
..+|+++.+|..|.++|......+.+++ + ..++..+++.+|..- .+.|+.+
T Consensus 218 P~~Pv~i~~g~~D~vvP~~~~~~l~~~~c~~G~a~V~~~~~~~~~H~~~~~~~~~~a~ 275 (290)
T PF03583_consen 218 PTVPVLIYQGTADEVVPPADTDALVAKWCAAGGADVEYVRYPGGGHLGAAFASAPDAL 275 (290)
T ss_pred CCCCEEEEecCCCCCCChHHHHHHHHHHHHcCCCCEEEEecCCCChhhhhhcCcHHHH
Confidence 4589999999999999999888777664 2 345566678899853 3444444
No 104
>KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism]
Probab=90.76 E-value=1 Score=33.50 Aligned_cols=58 Identities=12% Similarity=0.141 Sum_probs=43.8
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHHhCC--------CC-----------------cEEEecCCCCccCCcChHHHHHHHHH
Q 034686 27 VKRVYLVCEEDIGLPKHFQHWMIQNYP--------VN-----------------EVMEIKGGDHMAMLSEPQKLCDCLSQ 81 (87)
Q Consensus 27 ~P~~~i~g~~D~~~p~~~~~~~~~~~~--------~~-----------------~~~~l~~aGH~p~l~~p~~~~~~l~~ 81 (87)
+++++..|+.|.++|.-.-+...+.+. .| .+..+.||||+.-..+|+.--.++..
T Consensus 364 ~rvliysGD~D~~~p~~gt~~~i~~L~~~~~~~~~pW~~~~~qvaG~~~~Y~~ltf~tVrGaGH~VP~~~p~~al~m~~~ 443 (454)
T KOG1282|consen 364 YRVLIYSGDHDLVVPFLGTQAWIKSLNLSITDEWRPWYHKGGQVAGYTKTYGGLTFATVRGAGHMVPYDKPESALIMFQR 443 (454)
T ss_pred eEEEEEeCCcceeCcchhhHHHHHhccCccccCccCCccCCCceeeeEEEecCEEEEEEeCCcccCCCCCcHHHHHHHHH
Confidence 799999999999999765554333221 11 12456699999999999999999998
Q ss_pred HHH
Q 034686 82 ISL 84 (87)
Q Consensus 82 ~~~ 84 (87)
|+.
T Consensus 444 fl~ 446 (454)
T KOG1282|consen 444 FLN 446 (454)
T ss_pred HHc
Confidence 875
No 105
>KOG2931 consensus Differentiation-related gene 1 protein (NDR1 protein), related proteins [Function unknown]
Probab=90.69 E-value=0.77 Score=32.55 Aligned_cols=57 Identities=7% Similarity=0.039 Sum_probs=43.1
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHHhCC--CCcEEEecCCCCccCCcChHHHHHHHHHHHHH
Q 034686 27 VKRVYLVCEEDIGLPKHFQHWMIQNYP--VNEVMEIKGGDHMAMLSEPQKLCDCLSQISLK 85 (87)
Q Consensus 27 ~P~~~i~g~~D~~~p~~~~~~~~~~~~--~~~~~~l~~aGH~p~l~~p~~~~~~l~~~~~~ 85 (87)
+|++.|.|++-.. .+..-.+..++. ...+..+.+||=.+..++|+++++.+.=|++.
T Consensus 247 c~vllvvGd~Sp~--~~~vv~~n~~Ldp~~ttllk~~d~g~l~~e~qP~kl~ea~~~FlqG 305 (326)
T KOG2931|consen 247 CPVLLVVGDNSPH--VSAVVECNSKLDPTYTTLLKMADCGGLVQEEQPGKLAEAFKYFLQG 305 (326)
T ss_pred ccEEEEecCCCch--hhhhhhhhcccCcccceEEEEcccCCcccccCchHHHHHHHHHHcc
Confidence 8999999976443 344445556553 45777788999999999999999998877653
No 106
>PRK10162 acetyl esterase; Provisional
Probab=90.59 E-value=1.5 Score=30.48 Aligned_cols=41 Identities=15% Similarity=-0.120 Sum_probs=27.9
Q ss_pred cceEEEEeCCCCCCCHHHH--HHHHHhCCCCcEEEecCCCCcc
Q 034686 27 VKRVYLVCEEDIGLPKHFQ--HWMIQNYPVNEVMEIKGGDHMA 67 (87)
Q Consensus 27 ~P~~~i~g~~D~~~p~~~~--~~~~~~~~~~~~~~l~~aGH~p 67 (87)
-|++++.|+.|.+.+.... ..+.+.--..++++++|.+|.-
T Consensus 249 Pp~~i~~g~~D~L~de~~~~~~~L~~aGv~v~~~~~~g~~H~f 291 (318)
T PRK10162 249 PPCFIAGAEFDPLLDDSRLLYQTLAAHQQPCEFKLYPGTLHAF 291 (318)
T ss_pred CCeEEEecCCCcCcChHHHHHHHHHHcCCCEEEEEECCCceeh
Confidence 4899999999999863322 2222222246888999999964
No 107
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=90.47 E-value=2.2 Score=27.84 Aligned_cols=51 Identities=16% Similarity=0.127 Sum_probs=33.0
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCccCCcChHHHHHHHHHH
Q 034686 27 VKRVYLVCEEDIGLPKHFQHWMIQNYPVNEVMEIKGGDHMAMLSEPQKLCDCLSQI 82 (87)
Q Consensus 27 ~P~~~i~g~~D~~~p~~~~~~~~~~~~~~~~~~l~~aGH~p~l~~p~~~~~~l~~~ 82 (87)
.+++++.+++|.+++...+ .+...+....+.+|.+|.-- .=++....|.+|
T Consensus 135 ~~~lvll~~~DEvLd~~~a---~~~~~~~~~~i~~ggdH~f~--~f~~~l~~i~~f 185 (187)
T PF05728_consen 135 ERYLVLLQTGDEVLDYREA---VAKYRGCAQIIEEGGDHSFQ--DFEEYLPQIIAF 185 (187)
T ss_pred ccEEEEEecCCcccCHHHH---HHHhcCceEEEEeCCCCCCc--cHHHHHHHHHHh
Confidence 6899999999999997333 34444555555667899743 334444444444
No 108
>PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional
Probab=88.98 E-value=2.9 Score=32.97 Aligned_cols=59 Identities=7% Similarity=-0.038 Sum_probs=38.3
Q ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhC----CCCcEEEecCCCCccC-CcChHHHHHHHHHHHHH
Q 034686 26 SVKRVYLVCEEDIGLPKHFQHWMIQNY----PVNEVMEIKGGDHMAM-LSEPQKLCDCLSQISLK 85 (87)
Q Consensus 26 ~~P~~~i~g~~D~~~p~~~~~~~~~~~----~~~~~~~l~~aGH~p~-l~~p~~~~~~l~~~~~~ 85 (87)
++|+++|+|..|..++......+.+.+ ...++.+.+ .||.-+ ...+.++.+.+.+|...
T Consensus 455 kvPvLlIhGw~D~~V~~~~s~~ly~aL~~~g~pkkL~l~~-g~H~~~~~~~~~d~~e~~~~Wfd~ 518 (767)
T PRK05371 455 KASVLVVHGLNDWNVKPKQVYQWWDALPENGVPKKLFLHQ-GGHVYPNNWQSIDFRDTMNAWFTH 518 (767)
T ss_pred CCCEEEEeeCCCCCCChHHHHHHHHHHHhcCCCeEEEEeC-CCccCCCchhHHHHHHHHHHHHHh
Confidence 389999999999999876543333332 234554444 789643 33456667777776654
No 109
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=86.29 E-value=0.79 Score=29.27 Aligned_cols=41 Identities=12% Similarity=0.015 Sum_probs=26.5
Q ss_pred cceEEEEeCCCCCCCHHH--HHHHHHhCCCCcEEEecCCCCcc
Q 034686 27 VKRVYLVCEEDIGLPKHF--QHWMIQNYPVNEVMEIKGGDHMA 67 (87)
Q Consensus 27 ~P~~~i~g~~D~~~p~~~--~~~~~~~~~~~~~~~l~~aGH~p 67 (87)
.|++++.|+.|.+++... .+.+.+.--..++++++|.+|.-
T Consensus 167 Pp~~i~~g~~D~l~~~~~~~~~~L~~~gv~v~~~~~~g~~H~f 209 (211)
T PF07859_consen 167 PPTLIIHGEDDVLVDDSLRFAEKLKKAGVDVELHVYPGMPHGF 209 (211)
T ss_dssp HEEEEEEETTSTTHHHHHHHHHHHHHTT-EEEEEEETTEETTG
T ss_pred CCeeeeccccccchHHHHHHHHHHHHCCCCEEEEEECCCeEEe
Confidence 578888999998874322 22222222246888899999964
No 110
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=85.90 E-value=2.6 Score=27.15 Aligned_cols=57 Identities=16% Similarity=0.177 Sum_probs=40.3
Q ss_pred CcceEEEEeCCCCCCCHHH---HHHHHHhCC-CCcEEEecCCCCccCCc-ChHHHHHHHHHHH
Q 034686 26 SVKRVYLVCEEDIGLPKHF---QHWMIQNYP-VNEVMEIKGGDHMAMLS-EPQKLCDCLSQIS 83 (87)
Q Consensus 26 ~~P~~~i~g~~D~~~p~~~---~~~~~~~~~-~~~~~~l~~aGH~p~l~-~p~~~~~~l~~~~ 83 (87)
.+|.++.....|....... ...-.+..+ ..+++.++ ++|.-|++ +..++++.|.+.+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~v~-G~H~~~l~~~~~~i~~~I~~~~ 229 (229)
T PF00975_consen 168 KVPITLFYALDDPLVSMDRLEEADRWWDYTSGDVEVHDVP-GDHFSMLKPHVAEIAEKIAEWL 229 (229)
T ss_dssp SSEEEEEEECSSSSSSHHCGGHHCHHHGCBSSSEEEEEES-SETTGHHSTTHHHHHHHHHHHH
T ss_pred CCcEEEEecCCCccccchhhhhHHHHHHhcCCCcEEEEEc-CCCcEecchHHHHHHHHHhccC
Confidence 4678888888888877662 221223333 34678888 79999998 8888888887753
No 111
>PRK10115 protease 2; Provisional
Probab=85.68 E-value=3.2 Score=32.21 Aligned_cols=49 Identities=4% Similarity=-0.025 Sum_probs=33.8
Q ss_pred cccccccCCcce-EEEEeCCCCCCCHHHHHHHHHhCC----CCcEEEe---cCCCCc
Q 034686 18 KFSDEGYGSVKR-VYLVCEEDIGLPKHFQHWMIQNYP----VNEVMEI---KGGDHM 66 (87)
Q Consensus 18 ~~~~~~~~~~P~-~~i~g~~D~~~p~~~~~~~~~~~~----~~~~~~l---~~aGH~ 66 (87)
++.+-.-...|. +++.|.+|.-+|+.....+.+++. ..+.+.+ +++||.
T Consensus 597 P~~~v~~~~~P~lLi~~g~~D~RV~~~~~~k~~a~Lr~~~~~~~~vl~~~~~~~GHg 653 (686)
T PRK10115 597 PYDNVTAQAYPHLLVTTGLHDSQVQYWEPAKWVAKLRELKTDDHLLLLCTDMDSGHG 653 (686)
T ss_pred chhccCccCCCceeEEecCCCCCcCchHHHHHHHHHHhcCCCCceEEEEecCCCCCC
Confidence 333333335785 566999999999888877776652 3456666 789998
No 112
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=84.76 E-value=5.5 Score=26.76 Aligned_cols=46 Identities=13% Similarity=-0.003 Sum_probs=35.2
Q ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhCC----CCcEEEecCCCCccCCc
Q 034686 25 GSVKRVYLVCEEDIGLPKHFQHWMIQNYP----VNEVMEIKGGDHMAMLS 70 (87)
Q Consensus 25 ~~~P~~~i~g~~D~~~p~~~~~~~~~~~~----~~~~~~l~~aGH~p~l~ 70 (87)
.++|+++++++.|..+|.+....+.+... ..++.++++++|.-+-.
T Consensus 157 ~~~pvl~~~~~~D~~~p~~~~~~~~~~~~~~~~~~~~~~y~ga~H~F~~~ 206 (236)
T COG0412 157 IKVPVLLHLAGEDPYIPAADVDALAAALEDAGVKVDLEIYPGAGHGFAND 206 (236)
T ss_pred ccCcEEEEecccCCCCChhHHHHHHHHHHhcCCCeeEEEeCCCccccccC
Confidence 44899999999999999886665555532 46778899888987743
No 113
>COG4287 PqaA PhoPQ-activated pathogenicity-related protein [General function prediction only]
Probab=83.76 E-value=0.9 Score=33.42 Aligned_cols=58 Identities=9% Similarity=0.067 Sum_probs=45.3
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHHhCCCC-cEEEecCCCCccCCcChHHHHHHHHHHHHHhC
Q 034686 27 VKRVYLVCEEDIGLPKHFQHWMIQNYPVN-EVMEIKGGDHMAMLSEPQKLCDCLSQISLKYA 87 (87)
Q Consensus 27 ~P~~~i~g~~D~~~p~~~~~~~~~~~~~~-~~~~l~~aGH~p~l~~p~~~~~~l~~~~~~~~ 87 (87)
+|+.+|.++.|...+++.+...-+.+|+. .+.++||..|-. -+.-+-+.|..|+++||
T Consensus 330 lpKyivnaSgDdff~pDsa~lYyd~LPG~kaLrmvPN~~H~~---~n~~i~esl~~flnrfq 388 (507)
T COG4287 330 LPKYIVNASGDDFFVPDSANLYYDDLPGEKALRMVPNDPHNL---INQFIKESLEPFLNRFQ 388 (507)
T ss_pred ccceeecccCCcccCCCccceeeccCCCceeeeeCCCCcchh---hHHHHHHHHHHHHHHHh
Confidence 89999999999999999888888888874 566788877754 34555666777777775
No 114
>COG4757 Predicted alpha/beta hydrolase [General function prediction only]
Probab=83.46 E-value=4.6 Score=28.03 Aligned_cols=64 Identities=16% Similarity=0.150 Sum_probs=46.9
Q ss_pred cccccCC--cceEEEEeCCCCCCCHHHHHHHHHhCCCC--cEEEecC----CCCccCCcCh-HHHHHHHHHHH
Q 034686 20 SDEGYGS--VKRVYLVCEEDIGLPKHFQHWMIQNYPVN--EVMEIKG----GDHMAMLSEP-QKLCDCLSQIS 83 (87)
Q Consensus 20 ~~~~~~~--~P~~~i~g~~D~~~p~~~~~~~~~~~~~~--~~~~l~~----aGH~p~l~~p-~~~~~~l~~~~ 83 (87)
..+.|.. +|++++.+.+|.=+|+.....+++..++. +...++. -||+-..-+| |.+-+.+++++
T Consensus 208 ~~q~yaaVrtPi~~~~~~DD~w~P~As~d~f~~~y~nApl~~~~~~~~~~~lGH~gyfR~~~Ealwk~~L~w~ 280 (281)
T COG4757 208 YRQVYAAVRTPITFSRALDDPWAPPASRDAFASFYRNAPLEMRDLPRAEGPLGHMGYFREPFEALWKEMLGWF 280 (281)
T ss_pred HHHHHHHhcCceeeeccCCCCcCCHHHHHHHHHhhhcCcccceecCcccCcccchhhhccchHHHHHHHHHhh
Confidence 4455544 89999999999999999988888776543 3334443 5999988887 77777666543
No 115
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=83.14 E-value=7.3 Score=26.67 Aligned_cols=41 Identities=12% Similarity=-0.115 Sum_probs=28.3
Q ss_pred cceEEEEeCCCCCCCHH--HHHHHHHhCCCCcEEEecCCCCcc
Q 034686 27 VKRVYLVCEEDIGLPKH--FQHWMIQNYPVNEVMEIKGGDHMA 67 (87)
Q Consensus 27 ~P~~~i~g~~D~~~p~~--~~~~~~~~~~~~~~~~l~~aGH~p 67 (87)
-|++++.|+.|.+.+.. +.+.+.+.-...++..++|..|.-
T Consensus 246 PP~~i~~a~~D~l~~~~~~~a~~L~~agv~~~~~~~~g~~H~f 288 (312)
T COG0657 246 PPTLIQTAEFDPLRDEGEAYAERLRAAGVPVELRVYPGMIHGF 288 (312)
T ss_pred CCEEEEecCCCcchhHHHHHHHHHHHcCCeEEEEEeCCcceec
Confidence 57889999999999832 333333333345788899999954
No 116
>PLN00021 chlorophyllase
Probab=81.87 E-value=6.9 Score=27.44 Aligned_cols=47 Identities=13% Similarity=0.049 Sum_probs=31.0
Q ss_pred CcceEEEEeCCCC-----C----CCHHHH-HHHHHhC-CCCcEEEecCCCCccCCcCh
Q 034686 26 SVKRVYLVCEEDI-----G----LPKHFQ-HWMIQNY-PVNEVMEIKGGDHMAMLSEP 72 (87)
Q Consensus 26 ~~P~~~i~g~~D~-----~----~p~~~~-~~~~~~~-~~~~~~~l~~aGH~p~l~~p 72 (87)
.+|+++|.+..|. . .|.... ..+.+.+ +.....+++++||+-|++..
T Consensus 189 ~~P~liig~g~~~~~~~~~~p~~ap~~~~~~~f~~~~~~~~~~~~~~~~gH~~~~~~~ 246 (313)
T PLN00021 189 DIPVLVIGTGLGGEPRNPLFPPCAPDGVNHAEFFNECKAPAVHFVAKDYGHMDMLDDD 246 (313)
T ss_pred CCCeEEEecCCCcccccccccccCCCCCCHHHHHHhcCCCeeeeeecCCCcceeecCC
Confidence 3899988888653 2 223322 4455555 35566778899999998765
No 117
>KOG4627 consensus Kynurenine formamidase [Amino acid transport and metabolism]
Probab=81.34 E-value=1.6 Score=29.82 Aligned_cols=47 Identities=13% Similarity=0.056 Sum_probs=37.1
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCccCCcChH
Q 034686 27 VKRVYLVCEEDIGLPKHFQHWMIQNYPVNEVMEIKGGDHMAMLSEPQ 73 (87)
Q Consensus 27 ~P~~~i~g~~D~~~p~~~~~~~~~~~~~~~~~~l~~aGH~p~l~~p~ 73 (87)
+|.+++.|.+|.--=.+..+..++.....++..++|.+|.-.+++..
T Consensus 208 ~~ilVv~~~~espklieQnrdf~~q~~~a~~~~f~n~~hy~I~~~~~ 254 (270)
T KOG4627|consen 208 VWILVVAAEHESPKLIEQNRDFADQLRKASFTLFKNYDHYDIIEETA 254 (270)
T ss_pred eeeeEeeecccCcHHHHhhhhHHHHhhhcceeecCCcchhhHHHHhc
Confidence 68999999998765555667777777778888999999997776543
No 118
>PF06850 PHB_depo_C: PHB de-polymerase C-terminus; InterPro: IPR009656 This entry represents the C terminus of bacterial poly(3-hydroxybutyrate) (PHB) de-polymerase. This degrades PHB granules to oligomers and monomers of 3-hydroxy-butyric acid.
Probab=80.76 E-value=5.7 Score=26.55 Aligned_cols=66 Identities=9% Similarity=0.042 Sum_probs=45.0
Q ss_pred cccccCCcceEEEEeCCCCCCCHH---HHHHHHHhCCC--CcEEEecCCCCccCCcC---hHHHHHHHHHHHHH
Q 034686 20 SDEGYGSVKRVYLVCEEDIGLPKH---FQHWMIQNYPV--NEVMEIKGGDHMAMLSE---PQKLCDCLSQISLK 85 (87)
Q Consensus 20 ~~~~~~~~P~~~i~g~~D~~~p~~---~~~~~~~~~~~--~~~~~l~~aGH~p~l~~---p~~~~~~l~~~~~~ 85 (87)
...+.++++.+=|-|+.|.+...- .+..+...+|. ..-++.+|+||.--++= -+++.-.|.+|+..
T Consensus 128 dp~aI~~taLlTVEGe~DDIsg~GQT~AA~~LC~glp~~~k~~~~~~g~GHYGlF~G~rwr~~I~P~i~~fi~~ 201 (202)
T PF06850_consen 128 DPAAIRRTALLTVEGERDDISGPGQTHAAHDLCTGLPADMKRHHLQPGVGHYGLFNGSRWREEIYPRIREFIRQ 201 (202)
T ss_pred chHHcccceeEEeecCcccCCcchHHHHHHHHhcCCCHHHhhhcccCCCCeeecccchhhhhhhhHHHHHHHHh
Confidence 344567788899999999998644 33456666664 34556779999977754 35566666666654
No 119
>COG2939 Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism]
Probab=80.67 E-value=2 Score=32.35 Aligned_cols=57 Identities=11% Similarity=0.074 Sum_probs=42.0
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHHhCC-------CCcEEEecCCCCccCCcChHHHHHHHHHHHH
Q 034686 27 VKRVYLVCEEDIGLPKHFQHWMIQNYP-------VNEVMEIKGGDHMAMLSEPQKLCDCLSQISL 84 (87)
Q Consensus 27 ~P~~~i~g~~D~~~p~~~~~~~~~~~~-------~~~~~~l~~aGH~p~l~~p~~~~~~l~~~~~ 84 (87)
+++....|=.|..+|+-.++.-.+..+ ...+.+++ +|||....+|+...+.+..+..
T Consensus 426 Lkw~~~~g~~d~~~~~~~~~~t~e~~~~~~s~~n~~~~r~y~-aGHMvp~d~P~~~~~~~~~~~~ 489 (498)
T COG2939 426 LKWLGASGYFDASTPFFWSRLTLEEMGGYKSYRNLTFLRIYE-AGHMVPYDRPESSLEMVNLWIN 489 (498)
T ss_pred ceEeeecchhhhcCCCcccccchhhcccccccCCceEEEEec-CcceeecCChHHHHHHHHHHHh
Confidence 778888888888888776654334333 22455666 9999999999999998877653
No 120
>KOG2624 consensus Triglyceride lipase-cholesterol esterase [Lipid transport and metabolism]
Probab=79.96 E-value=9.3 Score=28.07 Aligned_cols=61 Identities=10% Similarity=0.083 Sum_probs=46.1
Q ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhCCCCcEE---EecCCCCccCC---cChHHHHHHHHHHHHHh
Q 034686 26 SVKRVYLVCEEDIGLPKHFQHWMIQNYPVNEVM---EIKGGDHMAML---SEPQKLCDCLSQISLKY 86 (87)
Q Consensus 26 ~~P~~~i~g~~D~~~p~~~~~~~~~~~~~~~~~---~l~~aGH~p~l---~~p~~~~~~l~~~~~~~ 86 (87)
.+|+.+.+|+.|.++.++....+....+...+. -+++=.|.=|+ +.++++.+-+.+.++.+
T Consensus 332 ~~P~~l~~g~~D~l~~~~DV~~~~~~~~~~~~~~~~~~~~ynHlDFi~g~da~~~vy~~vi~~~~~~ 398 (403)
T KOG2624|consen 332 KVPTALYYGDNDWLADPEDVLILLLVLPNSVIKYIVPIPEYNHLDFIWGLDAKEEVYDPVIERLRLF 398 (403)
T ss_pred ccCEEEEecCCcccCCHHHHHHHHHhcccccccccccCCCccceeeeeccCcHHHHHHHHHHHHHhh
Confidence 489999999999999888888777776653332 25667888665 55888988888877643
No 121
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=79.79 E-value=7.1 Score=27.59 Aligned_cols=57 Identities=5% Similarity=0.064 Sum_probs=41.8
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHHhCCC---------------------------CcEEEecCCCCccCCcChHHHHHHH
Q 034686 27 VKRVYLVCEEDIGLPKHFQHWMIQNYPV---------------------------NEVMEIKGGDHMAMLSEPQKLCDCL 79 (87)
Q Consensus 27 ~P~~~i~g~~D~~~p~~~~~~~~~~~~~---------------------------~~~~~l~~aGH~p~l~~p~~~~~~l 79 (87)
+|+++++|.+|.++-.+...+++..... ...+.+.+.||+.+=.+|+-+++.+
T Consensus 213 ikvli~ygg~DhLIEeeI~~E~a~~f~~l~Hf~~~~~~seee~~kI~~~f~~~~~~~sv~f~~dgHf~qK~~A~lIA~~i 292 (297)
T PF06342_consen 213 IKVLIAYGGKDHLIEEEISFEFAMKFKGLDHFNIEKEISEEEKPKILKSFASGQKGASVFFAKDGHFQQKFRADLIAEAI 292 (297)
T ss_pred CcEEEEEcCcchhhHHHHHHHHHHHhCCccceeeecCCChhHHHHHHHHHhcCCceeEEEEecCChHHhHHHHHHHHHHH
Confidence 8999999999999887776665544321 1234455678999999998888887
Q ss_pred HHHH
Q 034686 80 SQIS 83 (87)
Q Consensus 80 ~~~~ 83 (87)
..++
T Consensus 293 ~~mf 296 (297)
T PF06342_consen 293 KKMF 296 (297)
T ss_pred HHhh
Confidence 7653
No 122
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=79.73 E-value=4.3 Score=29.87 Aligned_cols=44 Identities=14% Similarity=0.119 Sum_probs=29.9
Q ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCC-CccC
Q 034686 25 GSVKRVYLVCEEDIGLPKHFQHWMIQNYPVNEVMEIKGGD-HMAM 68 (87)
Q Consensus 25 ~~~P~~~i~g~~D~~~p~~~~~~~~~~~~~~~~~~l~~aG-H~p~ 68 (87)
..+|.+.|.|++|.+.|.+..+.++......+...++... |+.+
T Consensus 351 ~~~plL~i~~~~D~v~P~eD~~lia~~s~~gk~~~~~~~~~~~gy 395 (411)
T PF06500_consen 351 CPTPLLAINGEDDPVSPIEDSRLIAESSTDGKALRIPSKPLHMGY 395 (411)
T ss_dssp BSS-EEEEEETT-SSS-HHHHHHHHHTBTT-EEEEE-SSSHHHHH
T ss_pred CCcceEEeecCCCCCCCHHHHHHHHhcCCCCceeecCCCccccch
Confidence 3489999999999999999998777776667777887333 5444
No 123
>PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function. This family contains many hypothetical proteins. ; PDB: 2Q0X_B.
Probab=79.48 E-value=1.2 Score=31.38 Aligned_cols=57 Identities=12% Similarity=0.075 Sum_probs=8.5
Q ss_pred cceEEEEeCCCCCCCHHHH-HHHHHhCCC------C--cEEEecCCCCccCCcChH----HHHHHHHHHH
Q 034686 27 VKRVYLVCEEDIGLPKHFQ-HWMIQNYPV------N--EVMEIKGGDHMAMLSEPQ----KLCDCLSQIS 83 (87)
Q Consensus 27 ~P~~~i~g~~D~~~p~~~~-~~~~~~~~~------~--~~~~l~~aGH~p~l~~p~----~~~~~l~~~~ 83 (87)
.|++++.+++|..+|...- ..+.+++.. | ..-+|+||+|..--...+ ++.+.+..|+
T Consensus 233 ~plLvl~Sg~DEyvP~~vdk~~Ll~rw~~a~~~~~~s~~S~iI~GA~H~~~~~~~~~~~~~l~~rV~~fl 302 (303)
T PF08538_consen 233 KPLLVLYSGKDEYVPPWVDKEALLERWKAATNPKIWSPLSGIIPGASHNVSGPSQAEAREWLVERVVKFL 302 (303)
T ss_dssp S-EEEEEE--TT----------------------------------------------------------
T ss_pred CceEEEecCCCceecccccccccccccccccccccccccccccccccccccccccccccccccccccccC
Confidence 6999999999999987654 334444421 1 234799999997654433 3555555544
No 124
>COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=79.34 E-value=5.7 Score=26.20 Aligned_cols=41 Identities=12% Similarity=-0.115 Sum_probs=30.6
Q ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCcc
Q 034686 26 SVKRVYLVCEEDIGLPKHFQHWMIQNYPVNEVMEIKGGDHMA 67 (87)
Q Consensus 26 ~~P~~~i~g~~D~~~p~~~~~~~~~~~~~~~~~~l~~aGH~p 67 (87)
++|+++..|+.|.+-+.+.-...+ ..+..+++.++++.|..
T Consensus 142 ~tPtli~qGtrD~fGtr~~Va~y~-ls~~iev~wl~~adHDL 182 (213)
T COG3571 142 KTPTLITQGTRDEFGTRDEVAGYA-LSDPIEVVWLEDADHDL 182 (213)
T ss_pred CCCeEEeecccccccCHHHHHhhh-cCCceEEEEeccCcccc
Confidence 379999999999998866553322 23567888899888874
No 125
>KOG2112 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=79.08 E-value=3 Score=27.94 Aligned_cols=54 Identities=15% Similarity=-0.016 Sum_probs=37.3
Q ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhC----CCCcEEEecCCCCccCCcChHHHHHHH
Q 034686 26 SVKRVYLVCEEDIGLPKHFQHWMIQNY----PVNEVMEIKGGDHMAMLSEPQKLCDCL 79 (87)
Q Consensus 26 ~~P~~~i~g~~D~~~p~~~~~~~~~~~----~~~~~~~l~~aGH~p~l~~p~~~~~~l 79 (87)
.+|...-+|+.|.++|..........+ ...++..++|-+|...-+.-+++...|
T Consensus 144 ~~~i~~~Hg~~d~~vp~~~g~~s~~~l~~~~~~~~f~~y~g~~h~~~~~e~~~~~~~~ 201 (206)
T KOG2112|consen 144 YTPILLCHGTADPLVPFRFGEKSAQFLKSLGVRVTFKPYPGLGHSTSPQELDDLKSWI 201 (206)
T ss_pred cchhheecccCCceeehHHHHHHHHHHHHcCCceeeeecCCccccccHHHHHHHHHHH
Confidence 478999999999999998876554443 235667788888876544444444333
No 126
>PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases. Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B.
Probab=76.44 E-value=7.5 Score=27.22 Aligned_cols=43 Identities=12% Similarity=0.117 Sum_probs=29.1
Q ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhC--CCCcEEEecCCCCccC
Q 034686 26 SVKRVYLVCEEDIGLPKHFQHWMIQNY--PVNEVMEIKGGDHMAM 68 (87)
Q Consensus 26 ~~P~~~i~g~~D~~~p~~~~~~~~~~~--~~~~~~~l~~aGH~p~ 68 (87)
++|.....+.+|.-+-...-..|.+.. +..+++.++|++|..-
T Consensus 195 ~iP~iaF~A~~D~WV~q~eV~~~~~~~~s~~~klysl~Gs~HdL~ 239 (294)
T PF02273_consen 195 SIPFIAFTANDDDWVKQSEVEELLDNINSNKCKLYSLPGSSHDLG 239 (294)
T ss_dssp -S-EEEEEETT-TTS-HHHHHHHHTT-TT--EEEEEETT-SS-TT
T ss_pred CCCEEEEEeCCCccccHHHHHHHHHhcCCCceeEEEecCccchhh
Confidence 489999999999999887777777754 4568999999999864
No 127
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=76.42 E-value=2.2 Score=27.64 Aligned_cols=26 Identities=4% Similarity=-0.128 Sum_probs=21.2
Q ss_pred cc-eEEEEeCCCCCCCHHHHHHHHHhC
Q 034686 27 VK-RVYLVCEEDIGLPKHFQHWMIQNY 52 (87)
Q Consensus 27 ~P-~~~i~g~~D~~~p~~~~~~~~~~~ 52 (87)
.| .++++|++|.++|++.++.+.+.+
T Consensus 168 ~p~~~i~hG~~D~vVp~~~~~~~~~~l 194 (212)
T TIGR01840 168 TPIMSVVHGDADYTVLPGNADEIRDAM 194 (212)
T ss_pred CCeEEEEEcCCCceeCcchHHHHHHHH
Confidence 45 568899999999999888777664
No 128
>KOG2565 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=72.59 E-value=7.1 Score=28.90 Aligned_cols=59 Identities=19% Similarity=0.129 Sum_probs=40.6
Q ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhCCC-CcEEEecCCCCccCCcChHHHHHHHHHHHHH
Q 034686 25 GSVKRVYLVCEEDIGLPKHFQHWMIQNYPV-NEVMEIKGGDHMAMLSEPQKLCDCLSQISLK 85 (87)
Q Consensus 25 ~~~P~~~i~g~~D~~~p~~~~~~~~~~~~~-~~~~~l~~aGH~p~l~~p~~~~~~l~~~~~~ 85 (87)
..+|+.+-.+..|..-..+.+. ..+.++ ......+..||++.++.|+.+++.+..|++.
T Consensus 403 v~vPtg~a~f~~el~~~~~~~l--rdky~nL~~~s~~~~GGhFaalE~p~~La~D~~~FV~~ 462 (469)
T KOG2565|consen 403 VRVPTGCARFKFELWHTSDDVL--RDKYPNLTHSSYHPKGGHFAALEDPKKLAQDFFSFVEK 462 (469)
T ss_pred cccchhhhccccchhhCcHHHH--hhhcccceeeEeccCCcchhhhhCcHHHHHHHHHHHHH
Confidence 3477777777776554333332 355564 2333455689999999999999999998864
No 129
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=71.48 E-value=19 Score=23.87 Aligned_cols=51 Identities=16% Similarity=0.137 Sum_probs=34.4
Q ss_pred CCcceEEEEeCCCC--CCCHHHHHHHHHhCCCCcEEEecCCCCccCCcChHHHHHHHHHHHH
Q 034686 25 GSVKRVYLVCEEDI--GLPKHFQHWMIQNYPVNEVMEIKGGDHMAMLSEPQKLCDCLSQISL 84 (87)
Q Consensus 25 ~~~P~~~i~g~~D~--~~p~~~~~~~~~~~~~~~~~~l~~aGH~p~l~~p~~~~~~l~~~~~ 84 (87)
...|++.|+|+++. .+|. -..++.+++.++ .||- |-.+.+++++.|.+.++
T Consensus 138 ~~~~v~CiyG~~E~d~~cp~-------l~~~~~~~i~lp-GgHH-fd~dy~~La~~Il~~l~ 190 (192)
T PF06057_consen 138 PPAPVQCIYGEDEDDSLCPS-------LRQPGVEVIALP-GGHH-FDGDYDALAKRILDALK 190 (192)
T ss_pred CCCeEEEEEcCCCCCCcCcc-------ccCCCcEEEEcC-CCcC-CCCCHHHHHHHHHHHHh
Confidence 34689999996644 4441 123567888898 6885 44668888888877554
No 130
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=71.24 E-value=18 Score=28.61 Aligned_cols=63 Identities=11% Similarity=0.063 Sum_probs=41.2
Q ss_pred ccccCCcce-EEEEeCCCCCCCHHHHHHHHHhCC----CCcEEEecCCCCccCCcCh-HHHHHHHHHHH
Q 034686 21 DEGYGSVKR-VYLVCEEDIGLPKHFQHWMIQNYP----VNEVMEIKGGDHMAMLSEP-QKLCDCLSQIS 83 (87)
Q Consensus 21 ~~~~~~~P~-~~i~g~~D~~~p~~~~~~~~~~~~----~~~~~~l~~aGH~p~l~~p-~~~~~~l~~~~ 83 (87)
.....+.|. ++++|+.|.-++......+.+.+. ..+..++++.+|...-..+ ..+...+..|+
T Consensus 676 ~~~~~~~~~~LliHGt~DdnVh~q~s~~~~~aL~~~gv~~~~~vypde~H~is~~~~~~~~~~~~~~~~ 744 (755)
T KOG2100|consen 676 PANNIKTPKLLLIHGTEDDNVHFQQSAILIKALQNAGVPFRLLVYPDENHGISYVEVISHLYEKLDRFL 744 (755)
T ss_pred hhhhhccCCEEEEEcCCcCCcCHHHHHHHHHHHHHCCCceEEEEeCCCCcccccccchHHHHHHHHHHH
Confidence 333444455 999999999998776655554432 3688899999999776553 33333444443
No 131
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=69.14 E-value=6.1 Score=26.51 Aligned_cols=30 Identities=10% Similarity=0.217 Sum_probs=24.0
Q ss_pred ccCCcceEEEEeCCCCCCCHHHHHHHHHhC
Q 034686 23 GYGSVKRVYLVCEEDIGLPKHFQHWMIQNY 52 (87)
Q Consensus 23 ~~~~~P~~~i~g~~D~~~p~~~~~~~~~~~ 52 (87)
.+...|+++++|+.|..+.+...+.+.+.+
T Consensus 166 ~~~~~P~~v~hG~~D~tV~~~n~~~~~~q~ 195 (220)
T PF10503_consen 166 AYPGYPRIVFHGTADTTVNPQNADQLVAQW 195 (220)
T ss_pred CCCCCCEEEEecCCCCccCcchHHHHHHHH
Confidence 345579999999999999888777666654
No 132
>KOG3975 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.55 E-value=23 Score=24.94 Aligned_cols=57 Identities=11% Similarity=0.155 Sum_probs=46.4
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEe-cCCCCccCCcChHHHHHHHHHHH
Q 034686 27 VKRVYLVCEEDIGLPKHFQHWMIQNYPVNEVMEI-KGGDHMAMLSEPQKLCDCLSQIS 83 (87)
Q Consensus 27 ~P~~~i~g~~D~~~p~~~~~~~~~~~~~~~~~~l-~~aGH~p~l~~p~~~~~~l~~~~ 83 (87)
.-.++.+|+.|.-+|..+...+.+..|..++..- +++-|.--+.+.+..+..+.+.+
T Consensus 243 d~l~Fyygt~DgW~p~~~~d~~kdd~~eed~~Ldedki~HAFV~~~~q~ma~~v~d~~ 300 (301)
T KOG3975|consen 243 DSLWFYYGTNDGWVPSHYYDYYKDDVPEEDLKLDEDKIPHAFVVKHAQYMANAVFDMI 300 (301)
T ss_pred cEEEEEccCCCCCcchHHHHHHhhhcchhceeeccccCCcceeecccHHHHHHHHHhh
Confidence 5688999999999999999999999886554432 58999998999998888776543
No 133
>PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like.; PDB: 3LP5_A 3FLE_A 3DS8_A.
Probab=68.18 E-value=14 Score=25.33 Aligned_cols=56 Identities=11% Similarity=0.126 Sum_probs=39.8
Q ss_pred cceEEEEeC------CCCCCCHHHHHHHHHhCC----CCcEEEecC--CCCccCCcChHHHHHHHHHHH
Q 034686 27 VKRVYLVCE------EDIGLPKHFQHWMIQNYP----VNEVMEIKG--GDHMAMLSEPQKLCDCLSQIS 83 (87)
Q Consensus 27 ~P~~~i~g~------~D~~~p~~~~~~~~~~~~----~~~~~~l~~--aGH~p~l~~p~~~~~~l~~~~ 83 (87)
+.++-|.|. .|..+|...+..+..-.. ..+..++.| +.|+-..+++ ++.+.|.+|+
T Consensus 185 i~VLnI~G~~~~g~~sDG~V~~~Ss~sl~~L~~~~~~~Y~e~~v~G~~a~HS~LheN~-~V~~~I~~FL 252 (255)
T PF06028_consen 185 IQVLNIYGDLEDGSNSDGIVPNASSLSLRYLLKNRAKSYQEKTVTGKDAQHSQLHENP-QVDKLIIQFL 252 (255)
T ss_dssp -EEEEEEEESBTTCSBTSSSBHHHHCTHHHHCTTTSSEEEEEEEESGGGSCCGGGCCH-HHHHHHHHHH
T ss_pred eEEEEEecccCCCCCCCeEEeHHHHHHHHHHhhcccCceEEEEEECCCCccccCCCCH-HHHHHHHHHh
Confidence 789999998 799999888765544442 245556664 6899999888 4557777765
No 134
>KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms]
Probab=67.78 E-value=19 Score=25.82 Aligned_cols=57 Identities=12% Similarity=0.099 Sum_probs=35.1
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHHhCC--C--CcEEEecCCCCccCCcChH-----HHHHHHHHHHHH
Q 034686 27 VKRVYLVCEEDIGLPKHFQHWMIQNYP--V--NEVMEIKGGDHMAMLSEPQ-----KLCDCLSQISLK 85 (87)
Q Consensus 27 ~P~~~i~g~~D~~~p~~~~~~~~~~~~--~--~~~~~l~~aGH~p~l~~p~-----~~~~~l~~~~~~ 85 (87)
-|++++.|+.|.+.... ..+++++. + .++...++++|..++-.|. ++.+.+.+|++.
T Consensus 269 p~tlv~~ag~D~L~D~~--~~Y~~~Lkk~Gv~v~~~~~e~~~H~~~~~~~~~~~a~~~~~~i~~fi~~ 334 (336)
T KOG1515|consen 269 PPTLVVVAGYDVLRDEG--LAYAEKLKKAGVEVTLIHYEDGFHGFHILDPSSKEAHALMDAIVEFIKS 334 (336)
T ss_pred CceEEEEeCchhhhhhh--HHHHHHHHHcCCeEEEEEECCCeeEEEecCCchhhHHHHHHHHHHHHhh
Confidence 35888889999987433 33333332 2 3455688999987775554 445555555543
No 135
>COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=67.64 E-value=9.6 Score=27.05 Aligned_cols=46 Identities=13% Similarity=-0.138 Sum_probs=35.1
Q ss_pred ccCCcceEEEEeCCCCCCCHHHHHHHHHhCCCC-cEEEecCCCCccC
Q 034686 23 GYGSVKRVYLVCEEDIGLPKHFQHWMIQNYPVN-EVMEIKGGDHMAM 68 (87)
Q Consensus 23 ~~~~~P~~~i~g~~D~~~p~~~~~~~~~~~~~~-~~~~l~~aGH~p~ 68 (87)
+..++|+++..|-.|.++|+..+-.+.+..+.. ++.+++--+|--+
T Consensus 256 ~RiK~pvL~svgL~D~vcpPstqFA~yN~l~~~K~i~iy~~~aHe~~ 302 (321)
T COG3458 256 ARIKVPVLMSVGLMDPVCPPSTQFAAYNALTTSKTIEIYPYFAHEGG 302 (321)
T ss_pred HhhccceEEeecccCCCCCChhhHHHhhcccCCceEEEeeccccccC
Confidence 345699999999999999999998888888653 4455554457644
No 136
>cd08769 DAP_dppA_2 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=65.07 E-value=44 Score=23.29 Aligned_cols=58 Identities=14% Similarity=0.057 Sum_probs=39.1
Q ss_pred cccCCcceEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEec-CCC-CccCCcChHHHHHHHHHHHHH
Q 034686 22 EGYGSVKRVYLVCEEDIGLPKHFQHWMIQNYPVNEVMEIK-GGD-HMAMLSEPQKLCDCLSQISLK 85 (87)
Q Consensus 22 ~~~~~~P~~~i~g~~D~~~p~~~~~~~~~~~~~~~~~~l~-~aG-H~p~l~~p~~~~~~l~~~~~~ 85 (87)
.++-.+|+.+|.|++ ....+.....|..+.+.++ +.| ++..--.|++..+.|.+.+++
T Consensus 143 Ag~~gVPV~lVsGDd------~~~~ea~~~~P~~~tv~vK~~~gr~aA~~~~p~~a~~~I~~aa~~ 202 (270)
T cd08769 143 AGEFGVPVVLVAGDS------ELEKEVKEETPWAVFVPTKESLSRYSAKSPSMKKVKEELREAVKE 202 (270)
T ss_pred HhhcCCCEEEEecCH------HHHHHHHHhCCCceEEEEeeecCCCccccCCHHHHHHHHHHHHHH
Confidence 455569999999964 2233444456887777777 456 445556688888888877654
No 137
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=57.76 E-value=15 Score=30.01 Aligned_cols=54 Identities=15% Similarity=0.079 Sum_probs=31.9
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCccCCcCh--HHHHHHHHH
Q 034686 27 VKRVYLVCEEDIGLPKHFQHWMIQNYPVNEVMEIKGGDHMAMLSEP--QKLCDCLSQ 81 (87)
Q Consensus 27 ~P~~~i~g~~D~~~p~~~~~~~~~~~~~~~~~~l~~aGH~p~l~~p--~~~~~~l~~ 81 (87)
.|..++.+++|...+......-.+..+..++..++ +||+.|+..+ .++++.|.+
T Consensus 1237 ~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~v~-g~H~~~~~~~~~~~~~~~l~~ 1292 (1296)
T PRK10252 1237 GKATLFVAERTLQEGMSPEQAWSPWIAELDVYRQD-CAHVDIISPEAFEKIGPILRA 1292 (1296)
T ss_pred CceEEEEcCCCCcccCCcccchhhhcCCCEEEECC-CCHHHHCCcHHHHHHHHHHHH
Confidence 68888888888654332222112222456777786 8999988655 344444433
No 138
>COG4188 Predicted dienelactone hydrolase [General function prediction only]
Probab=57.31 E-value=6.5 Score=28.56 Aligned_cols=52 Identities=13% Similarity=-0.032 Sum_probs=38.3
Q ss_pred cCCcceEEEEeCCCCCCCHH-HHHHHHHhCCCC--cEEEecCCCCccCCcChHHH
Q 034686 24 YGSVKRVYLVCEEDIGLPKH-FQHWMIQNYPVN--EVMEIKGGDHMAMLSEPQKL 75 (87)
Q Consensus 24 ~~~~P~~~i~g~~D~~~p~~-~~~~~~~~~~~~--~~~~l~~aGH~p~l~~p~~~ 75 (87)
+-.+|+..+.|..|...|++ .+......+++- .+..++|+.|.-+++-.++.
T Consensus 249 ~v~~P~~~~a~s~D~~aP~~~~~~~~f~~l~g~~k~~~~vp~a~h~sfl~~~~~~ 303 (365)
T COG4188 249 KVTDPVLLAAGSADGFAPPVTEQIRPFGYLPGALKYLRLVPGATHFSFLELCKEG 303 (365)
T ss_pred eeecceeeecccccccCCcccccccccccCCcchhheeecCCCccccccccCccc
Confidence 34489999999999977654 344455556653 45567899999999887774
No 139
>PF13709 DUF4159: Domain of unknown function (DUF4159)
Probab=55.85 E-value=57 Score=21.56 Aligned_cols=49 Identities=10% Similarity=0.013 Sum_probs=36.5
Q ss_pred ccCcccccccCCcceEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCC
Q 034686 15 KASKFSDEGYGSVKRVYLVCEEDIGLPKHFQHWMIQNYPVNEVMEIKGG 63 (87)
Q Consensus 15 ~~~~~~~~~~~~~P~~~i~g~~D~~~p~~~~~~~~~~~~~~~~~~l~~a 63 (87)
..+.+..+..-..|.+|+.|..+...+.+....+.+.+...=+..++.+
T Consensus 42 ~~v~~~~~~L~~yP~ly~~g~~~~~~s~~e~~~Lr~Yl~~GGfl~~D~~ 90 (207)
T PF13709_consen 42 QAVDLDDDELFFYPFLYWPGHGDFPLSDEEIANLRRYLENGGFLLFDDR 90 (207)
T ss_pred cccCCCchhHHhCCEEEEeCCCCCCCCHHHHHHHHHHHHcCCEEEEECC
Confidence 3456666677779999999999998888888777777655556667644
No 140
>cd03348 pro_PheOH Prokaryotic phenylalanine-4-hydroxylase (pro_PheOH); a member of the biopterin-dependent aromatic amino acid hydroxylase family of non-heme, iron(II)-dependent enzymes that also includes the eukaryotic proteins, phenylalanine-4-hydroxylase (eu_PheOH), tyrosine hydroxylase (TyrOH) and tryptophan hydroxylase (TrpOH). PheOH catalyzes the hydroxylation of L-Phe to L-tyrosine (L-Tyr). It uses (6R)-L-erythro-5,6,7,8-tetrahydrobiopterin (BH4) as the physiological electron donor.
Probab=54.52 E-value=4.8 Score=27.39 Aligned_cols=18 Identities=28% Similarity=0.534 Sum_probs=13.3
Q ss_pred CCCccCCcChHHHHHHHHH
Q 034686 63 GDHMAMLSEPQKLCDCLSQ 81 (87)
Q Consensus 63 aGH~p~l~~p~~~~~~l~~ 81 (87)
.||+||+.+|. +++.+.+
T Consensus 116 fGHvPmL~~p~-fAdf~q~ 133 (228)
T cd03348 116 FGHVPMLTNPV-FADFMQA 133 (228)
T ss_pred hcccHhhcCHH-HHHHHHH
Confidence 49999999985 5555444
No 141
>TIGR01267 Phe4hydrox_mono phenylalanine-4-hydroxylase, monomeric form. This family is of biopterin and metal-dependent hydroxylases is related to a family of longer, multimeric aromatic amino acid hydroxylases that have additional N-terminal regulatory sequences. These include tyrosine 3-monooxygenase, phenylalanine-4-hydroxylase, and tryptophan 5-monoxygenase.
Probab=53.66 E-value=6 Score=27.25 Aligned_cols=18 Identities=22% Similarity=0.427 Sum_probs=13.2
Q ss_pred CCCccCCcChHHHHHHHHH
Q 034686 63 GDHMAMLSEPQKLCDCLSQ 81 (87)
Q Consensus 63 aGH~p~l~~p~~~~~~l~~ 81 (87)
.||+||+.+|+ +++.+.+
T Consensus 116 fGH~P~L~~P~-FA~f~q~ 133 (248)
T TIGR01267 116 FGHVPLLTNPV-FADFTHT 133 (248)
T ss_pred hccccccCChH-HHHHHHH
Confidence 49999999985 5555444
No 142
>cd00361 arom_aa_hydroxylase Biopterin-dependent aromatic amino acid hydroxylase; a family of non-heme, iron(II)-dependent enzymes that includes prokaryotic and eukaryotic phenylalanine-4-hydroxylase (PheOH), eukaryotic tyrosine hydroxylase (TyrOH) and eukaryotic tryptophan hydroxylase (TrpOH). PheOH converts L-phenylalanine to L-tyrosine, an important step in phenylalanine catabolism and neurotransmitter biosynthesis, and is linked to a severe variant of phenylketonuria in humans. TyrOH and TrpOH are involved in the biosynthesis of catecholamine and serotonin, respectively. The eukaryotic enzymes are all homotetramers.
Probab=53.45 E-value=5.5 Score=26.96 Aligned_cols=19 Identities=21% Similarity=0.469 Sum_probs=13.5
Q ss_pred CCCccCCcChHHHHHHHHHH
Q 034686 63 GDHMAMLSEPQKLCDCLSQI 82 (87)
Q Consensus 63 aGH~p~l~~p~~~~~~l~~~ 82 (87)
.||+||+.+|+ +++.+.++
T Consensus 110 ~GH~P~L~~p~-fAdf~q~~ 128 (221)
T cd00361 110 FGHVPLLADPS-FADFSQEY 128 (221)
T ss_pred hccchhhcCHH-HHHHHHHH
Confidence 49999999985 55554443
No 143
>KOG2521 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.96 E-value=32 Score=24.92 Aligned_cols=67 Identities=18% Similarity=0.214 Sum_probs=46.7
Q ss_pred ccccccC-CcceEEEEeCCCCCCCHHHHHHHHHhC--C--CCcEEEecCCCCccCC-cChHHHHHHHHHHHHH
Q 034686 19 FSDEGYG-SVKRVYLVCEEDIGLPKHFQHWMIQNY--P--VNEVMEIKGGDHMAML-SEPQKLCDCLSQISLK 85 (87)
Q Consensus 19 ~~~~~~~-~~P~~~i~g~~D~~~p~~~~~~~~~~~--~--~~~~~~l~~aGH~p~l-~~p~~~~~~l~~~~~~ 85 (87)
+..+.+. ..+-+|+.+..|.++|.+..+.+++.. . .++.+-+.++-|..+. ..|....+...+|++.
T Consensus 217 ~~~~~~~~~~~~ly~~s~~d~v~~~~~ie~f~~~~~~~g~~v~s~~~~ds~H~~h~r~~p~~y~~~~~~Fl~~ 289 (350)
T KOG2521|consen 217 YEEQRNELPWNQLYLYSDNDDVLPADEIEKFIALRREKGVNVKSVKFKDSEHVAHFRSFPKTYLKKCSEFLRS 289 (350)
T ss_pred HHhhhhcccccceeecCCccccccHHHHHHHHHHHHhcCceEEEeeccCccceeeeccCcHHHHHHHHHHHHh
Confidence 3444454 378999999999999998887775443 2 2344445578898876 6688777777777654
No 144
>smart00824 PKS_TE Thioesterase. Peptide synthetases are involved in the non-ribosomal synthesis of peptide antibiotics. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates. There are also modules within the peptide synthetases that also share this similarity. With respect to antibiotic production, thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Thioesterases (non-integrated) have molecular masses of 25-29 kDa.
Probab=52.54 E-value=8.2 Score=23.82 Aligned_cols=55 Identities=13% Similarity=0.225 Sum_probs=32.6
Q ss_pred CcceEEEEeCCCCCC-CHHHHHHHHHh-CCCCcEEEecCCCCccCC-cChHHHHHHHHH
Q 034686 26 SVKRVYLVCEEDIGL-PKHFQHWMIQN-YPVNEVMEIKGGDHMAML-SEPQKLCDCLSQ 81 (87)
Q Consensus 26 ~~P~~~i~g~~D~~~-p~~~~~~~~~~-~~~~~~~~l~~aGH~p~l-~~p~~~~~~l~~ 81 (87)
..|+.++.+++|... +......-... ....++..++ ++|+-++ +++..+++.|..
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~-g~H~~~~~~~~~~~~~~~~~ 210 (212)
T smart00824 153 AAPTLLVRASEPLAEWPDEDPDGWRAHWPLPHTVVDVP-GDHFTMMEEHAAATARAVHD 210 (212)
T ss_pred CCCEEEEeccCCCCCCCCCCcccccCCCCCCceeEEcc-CchHHHHHHhHHHHHHHHHh
Confidence 379999999988654 21111111111 1245777787 8999874 556666665554
No 145
>PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function.
Probab=52.33 E-value=63 Score=21.98 Aligned_cols=41 Identities=22% Similarity=0.295 Sum_probs=31.1
Q ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhCCC--CcEEEe-cCCCCc
Q 034686 26 SVKRVYLVCEEDIGLPKHFQHWMIQNYPV--NEVMEI-KGGDHM 66 (87)
Q Consensus 26 ~~P~~~i~g~~D~~~p~~~~~~~~~~~~~--~~~~~l-~~aGH~ 66 (87)
....++.+|+.|.=+|.+....+.++.++ .++.+. +|.-|.
T Consensus 221 ~~kl~f~fg~~D~Wvp~~~~~~l~~~~~~~~~~~~v~~~~i~Ha 264 (266)
T PF10230_consen 221 GDKLWFYFGQNDHWVPNETRDELIERYPGHEPDVVVDEEGIPHA 264 (266)
T ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHcCCCCCeEEEecCCCCCC
Confidence 36899999999999999999999999883 344333 345553
No 146
>COG4481 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.83 E-value=5.6 Score=21.18 Aligned_cols=14 Identities=14% Similarity=0.216 Sum_probs=11.3
Q ss_pred ecCCCCccCCcChH
Q 034686 60 IKGGDHMAMLSEPQ 73 (87)
Q Consensus 60 l~~aGH~p~l~~p~ 73 (87)
..||||+.|+.+-+
T Consensus 37 C~nC~h~vm~pR~~ 50 (60)
T COG4481 37 CENCGHSVMMPRYD 50 (60)
T ss_pred ecCCCcEEEecHHH
Confidence 55899999998753
No 147
>PF05576 Peptidase_S37: PS-10 peptidase S37; InterPro: IPR008761 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. These group of serine peptidases belong to MEROPS peptidase family S37 (clan SC). The members of this group of secreted peptidases are restricted to bacteria. In Streptomyces lividans the peptidase removes tripeptides from the N terminus of extracellular proteins (tripeptidyl aminopeptidase,Tap) [, ].
Probab=50.31 E-value=23 Score=26.49 Aligned_cols=56 Identities=16% Similarity=0.141 Sum_probs=34.8
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCccCCcC-----hHHHHHHHHHHHH
Q 034686 27 VKRVYLVCEEDIGLPKHFQHWMIQNYPVNEVMEIKGGDHMAMLSE-----PQKLCDCLSQISL 84 (87)
Q Consensus 27 ~P~~~i~g~~D~~~p~~~~~~~~~~~~~~~~~~l~~aGH~p~l~~-----p~~~~~~l~~~~~ 84 (87)
-..+||.|++|.-....+.. .....++.+++.+|.+|...+.. -++....|.++++
T Consensus 352 ~rmlFVYG~nDPW~A~~f~l--~~g~~ds~v~~~PggnHga~I~~L~~~~r~~a~a~l~~WaG 412 (448)
T PF05576_consen 352 PRMLFVYGENDPWSAEPFRL--GKGKRDSYVFTAPGGNHGARIAGLPEAERAEATARLRRWAG 412 (448)
T ss_pred CeEEEEeCCCCCcccCcccc--CCCCcceEEEEcCCCcccccccCCCHHHHHHHHHHHHHHcC
Confidence 35899999999854222111 11223567888999999988765 2334445555554
No 148
>PRK11913 phhA phenylalanine 4-monooxygenase; Reviewed
Probab=49.65 E-value=7.3 Score=27.23 Aligned_cols=19 Identities=21% Similarity=0.467 Sum_probs=13.7
Q ss_pred CCCccCCcChHHHHHHHHHH
Q 034686 63 GDHMAMLSEPQKLCDCLSQI 82 (87)
Q Consensus 63 aGH~p~l~~p~~~~~~l~~~ 82 (87)
.||+||+.+|+ +++.+.++
T Consensus 132 fGHvPmL~~p~-FAdf~q~~ 150 (275)
T PRK11913 132 FGHVPLLTNPV-FADFMQAY 150 (275)
T ss_pred hccchhhcCHH-HHHHHHHH
Confidence 49999999985 55554443
No 149
>COG3186 Phenylalanine-4-hydroxylase [Amino acid transport and metabolism]
Probab=48.51 E-value=7.2 Score=27.18 Aligned_cols=11 Identities=36% Similarity=0.579 Sum_probs=9.6
Q ss_pred CCCccCCcChH
Q 034686 63 GDHMAMLSEPQ 73 (87)
Q Consensus 63 aGH~p~l~~p~ 73 (87)
-||+||+++|.
T Consensus 147 fGHvP~Lt~P~ 157 (291)
T COG3186 147 FGHVPMLTHPV 157 (291)
T ss_pred hccCchhcCch
Confidence 39999999994
No 150
>PF00351 Biopterin_H: Biopterin-dependent aromatic amino acid hydroxylase; InterPro: IPR019774 Phenylalanine, tyrosine and tryptophan hydroxylases constitute a family of tetrahydrobiopterin-dependent aromatic amino acid hydroxylases, all of which are rate-limiting catalysts for important metabolic pathways []. The proteins are structurally and functionally related, each containing iron, and catalysing ring hydroxylation of aromatic amino acids, using tetra-hydrobiopterin (BH4) as a substrate. All are regulated by phosphorylation at serines in their N-termini. It has been suggested that the proteins each contain a conserved C-terminal catalytic (C) domain and an unrelated N-terminal regulatory (R) domain. It is possible that the R domains arose from genes that were recruited from different sources to combine with the common gene for the catalytic core. Thus, by combining with the same C domain, the proteins acquired the unique regulatory properties of the separate R domains. A variety of enzymes belong to this family that includes, phenylalanine-4-hydroxylase from Chromobacterium violaceum where it is copper-dependent; it is iron-dependent in Pseudomonas aeruginosa, phenylalanine-4-hydroxylase catalyzes the conversion of phenylalanine to tyrosine. In humans, deficiencies are the cause of phenylketonuria, the most common inborn error of amino acid metabolism [], tryptophan 5-hydroxylase catalyzes the rate-limiting step in serotonin biosynthesis: the conversion of tryptophan to 3-hydroxy-anthranilate and tyrosine 3-hydroxylase catalyzes the rate limiting step in catecholamine biosynthesis: the conversion of tyrosine to 3,4-dihydroxy-L-phenylalanine.; GO: 0016714 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced pteridine as one donor, and incorporation of one atom of oxygen, 0055114 oxidation-reduction process; PDB: 1PHZ_A 2PHM_A 2V28_A 2V27_A 1PAH_A 1DMW_A 1TG2_A 1KW0_A 1MMT_A 1TDW_A ....
Probab=48.44 E-value=5.6 Score=28.52 Aligned_cols=18 Identities=33% Similarity=0.706 Sum_probs=14.4
Q ss_pred CCccCCcChHHHHHHHHHH
Q 034686 64 DHMAMLSEPQKLCDCLSQI 82 (87)
Q Consensus 64 GH~p~l~~p~~~~~~l~~~ 82 (87)
||+||+.+|. +++...++
T Consensus 171 GHvPmLadp~-FA~f~q~~ 188 (332)
T PF00351_consen 171 GHVPMLADPS-FADFSQEI 188 (332)
T ss_dssp HTHHHHTSHH-HHHHHHHH
T ss_pred ccchhhhcHH-HHHHHHHH
Confidence 8999999987 77766554
No 151
>COG0336 TrmD tRNA-(guanine-N1)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=45.56 E-value=26 Score=24.06 Aligned_cols=42 Identities=14% Similarity=0.280 Sum_probs=20.7
Q ss_pred CCcCCCccccccccccCcccccccCCcceEEEEeCCCCCCCHHHHHHHH
Q 034686 1 MLLRPGSMFIDNLSKASKFSDEGYGSVKRVYLVCEEDIGLPKHFQHWMI 49 (87)
Q Consensus 1 ~~lrp~~~~~~~~~~~~~~~~~~~~~~P~~~i~g~~D~~~p~~~~~~~~ 49 (87)
|.|+|+|+. ...+.+.... .+.+++.+-+=..++...+++++
T Consensus 60 Mvmk~epi~--~Al~~~~~~~-----~~~vi~lsP~G~~f~Q~~a~eLa 101 (240)
T COG0336 60 MVMKPEPLF--DALDSVKAAK-----KAKVILLSPQGKPFTQARARELA 101 (240)
T ss_pred cEeccHHHH--HHHHHHHhcc-----CCeEEEECCCCCccCHHHHHHHh
Confidence 567788875 2222222221 33444444444556666666554
No 152
>PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ]. It also includes several bacterial homologues of unknown function.
Probab=44.60 E-value=1e+02 Score=23.10 Aligned_cols=58 Identities=12% Similarity=0.039 Sum_probs=38.2
Q ss_pred cceEEEEeCCCCCCCHHHH----HHHHHhCC--------CCcEEEecCCCCccCCc--ChHHHHHHHHHHHH
Q 034686 27 VKRVYLVCEEDIGLPKHFQ----HWMIQNYP--------VNEVMEIKGGDHMAMLS--EPQKLCDCLSQISL 84 (87)
Q Consensus 27 ~P~~~i~g~~D~~~p~~~~----~~~~~~~~--------~~~~~~l~~aGH~p~l~--~p~~~~~~l~~~~~ 84 (87)
-..+..+|..|.++|+... +++.+..+ ..+++++||-|||.-=. .+-..-..|.++++
T Consensus 354 GKLI~~HG~aD~~I~p~~ti~YY~~V~~~~g~~~~~v~dF~RlF~vPGm~HC~gG~g~~~~d~l~aL~~WVE 425 (474)
T PF07519_consen 354 GKLILYHGWADPLIPPQGTIDYYERVVARMGGALADVDDFYRLFMVPGMGHCGGGPGPDPFDALTALVDWVE 425 (474)
T ss_pred CeEEEEecCCCCccCCCcHHHHHHHHHHhcccccccccceeEEEecCCCcccCCCCCCCCCCHHHHHHHHHh
Confidence 4678889999999975533 33444442 24899999999996543 34455555666654
No 153
>PF10605 3HBOH: 3HB-oligomer hydrolase (3HBOH) ; InterPro: IPR016582 This entry represents a group of predicted D-(-)-3-hydroxybutyrate oligomer hydrolases (also known as 3HB-oligomer hydrolase), which function in the degradation of poly-3-hydroxybutyrate (PHB). These enzymes catalyse the hydrolysis of D(-)-3-hydroxybutyrate oligomers (3HB-oligomers) into 3HB-monomers [, ].; GO: 0047989 hydroxybutyrate-dimer hydrolase activity, 0019605 butyrate metabolic process, 0005615 extracellular space
Probab=44.22 E-value=21 Score=27.95 Aligned_cols=43 Identities=12% Similarity=0.125 Sum_probs=30.3
Q ss_pred cCCcceEEEEeCCCCCCCHHHH-H---HHHHhC----CCCcEEEecCCCCc
Q 034686 24 YGSVKRVYLVCEEDIGLPKHFQ-H---WMIQNY----PVNEVMEIKGGDHM 66 (87)
Q Consensus 24 ~~~~P~~~i~g~~D~~~p~~~~-~---~~~~~~----~~~~~~~l~~aGH~ 66 (87)
....|.++|+|+.|.++|.... + .|.+.. ...++++++|+-|+
T Consensus 553 L~GKPaIiVhGR~DaLlPvnh~Sr~Y~~ln~~~eG~~s~lrYyeV~naqHf 603 (690)
T PF10605_consen 553 LHGKPAIIVHGRSDALLPVNHTSRPYLGLNRQVEGRASRLRYYEVTNAQHF 603 (690)
T ss_pred cCCCceEEEecccceecccCCCchHHHHHhhhhcccccceeEEEecCCeec
Confidence 4458999999999999997644 2 233322 13477888888887
No 154
>PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria. Their function is unknown.
Probab=43.54 E-value=99 Score=24.01 Aligned_cols=44 Identities=16% Similarity=0.295 Sum_probs=29.0
Q ss_pred CcceEEEEeCCCCCCCHHHH-HHHHHhCC--------CCc-EEEec-CCCCccCC
Q 034686 26 SVKRVYLVCEEDIGLPKHFQ-HWMIQNYP--------VNE-VMEIK-GGDHMAML 69 (87)
Q Consensus 26 ~~P~~~i~g~~D~~~p~~~~-~~~~~~~~--------~~~-~~~l~-~aGH~p~l 69 (87)
..|+.++++..|++.|+..+ .++.+-.+ +.+ ++.+- ..||...+
T Consensus 297 r~Piivfas~gDnITPP~QaL~WI~dlY~~~~ei~a~gQ~IVY~~h~~vGHLGIF 351 (581)
T PF11339_consen 297 RSPIIVFASYGDNITPPQQALNWIPDLYPDTEEIKAAGQTIVYLLHESVGHLGIF 351 (581)
T ss_pred CCCEEEEeccCCCCCChhHhccchHhhcCCHHHHHhCCCEEEEEecCCCCceEEE
Confidence 37999999999999998876 34444333 112 33333 57998544
No 155
>PRK14055 aromatic amino acid hydroxylase; Provisional
Probab=39.64 E-value=13 Score=27.00 Aligned_cols=17 Identities=18% Similarity=0.333 Sum_probs=12.2
Q ss_pred CCCccCCcChHHHHHHHH
Q 034686 63 GDHMAMLSEPQKLCDCLS 80 (87)
Q Consensus 63 aGH~p~l~~p~~~~~~l~ 80 (87)
.||+||+.+|. +++...
T Consensus 203 fGHvPmLanP~-FAdF~q 219 (362)
T PRK14055 203 LGHVPWLLHPS-FSEFFI 219 (362)
T ss_pred hccchhhcCHH-HHHHHH
Confidence 49999999985 444433
No 156
>cd03346 eu_TrpOH Eukaryotic tryptophan hydroxylase (TrpOH); a member of the biopterin-dependent aromatic amino acid hydroxylase family of non-heme, iron(II)-dependent enzymes that also includes prokaryotic and eukaryotic phenylalanine-4-hydroxylase (PheOH) and eukaryotic tyrosine hydroxylase (TyrOH). TrpOH oxidizes L-tryptophan to 5-hydroxy-L-tryptophan, the rate-limiting step in the biosynthesis of serotonin (5-hydroxytryptamine), a widely distributed hormone and neurotransmitter.
Probab=39.55 E-value=13 Score=26.25 Aligned_cols=18 Identities=17% Similarity=0.453 Sum_probs=13.2
Q ss_pred CCCccCCcChHHHHHHHHH
Q 034686 63 GDHMAMLSEPQKLCDCLSQ 81 (87)
Q Consensus 63 aGH~p~l~~p~~~~~~l~~ 81 (87)
.||+||+.+|. +++...+
T Consensus 170 ~GHvPlLadp~-FA~f~q~ 187 (287)
T cd03346 170 LGHVPLLADPS-FAQFSQE 187 (287)
T ss_pred hccchhhcCHH-HHHHHHH
Confidence 49999999984 5555444
No 157
>cd03345 eu_TyrOH Eukaryotic tyrosine hydroxylase (TyrOH); a member of the biopterin-dependent aromatic amino acid hydroxylase family of non-heme, iron(II)-dependent enzymes that also includes prokaryotic and eukaryotic phenylalanine-4-hydroxylase (PheOH) and eukaryotic tryptophan hydroxylase (TrpOH). TyrOH catalyzes the conversion of tyrosine to L-dihydroxyphenylalanine (L-DOPA), the rate-limiting step in the biosynthesis of the catecholamines dopamine, noradrenaline, and adrenaline.
Probab=39.48 E-value=13 Score=26.30 Aligned_cols=18 Identities=22% Similarity=0.462 Sum_probs=13.2
Q ss_pred CCCccCCcChHHHHHHHHH
Q 034686 63 GDHMAMLSEPQKLCDCLSQ 81 (87)
Q Consensus 63 aGH~p~l~~p~~~~~~l~~ 81 (87)
.||+||+.+|. +++...+
T Consensus 169 ~GHvPlLadp~-FA~f~q~ 186 (298)
T cd03345 169 LGHVPMLADPT-FAQFSQD 186 (298)
T ss_pred hccchhhCCHH-HHHHHHH
Confidence 49999999984 5555444
No 158
>COG2830 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.11 E-value=21 Score=23.56 Aligned_cols=34 Identities=29% Similarity=0.335 Sum_probs=24.9
Q ss_pred EEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCccC
Q 034686 32 LVCEEDIGLPKHFQHWMIQNYPVNEVMEIKGGDHMAM 68 (87)
Q Consensus 32 i~g~~D~~~p~~~~~~~~~~~~~~~~~~l~~aGH~p~ 68 (87)
+.|++|.+.|+.-|+.+- .+...+..+. .+|..+
T Consensus 170 ~v~skDkIFpp~nq~ayw--~~rc~v~ei~-g~H~~F 203 (214)
T COG2830 170 YVGSKDKIFPPANQHAYW--NARCAVIEIN-GEHYLF 203 (214)
T ss_pred hccCCCcccCCcchhhhh--ccceeEEEec-CcceEE
Confidence 468899999999887543 2456777786 688754
No 159
>KOG2541 consensus Palmitoyl protein thioesterase [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=38.81 E-value=1.1e+02 Score=21.81 Aligned_cols=54 Identities=13% Similarity=0.150 Sum_probs=38.5
Q ss_pred cceEEEEeCCCCCCC--HHHHHHHHHhCCCCcEEEec-CCC-----CccCCcChHHHHHHHH
Q 034686 27 VKRVYLVCEEDIGLP--KHFQHWMIQNYPVNEVMEIK-GGD-----HMAMLSEPQKLCDCLS 80 (87)
Q Consensus 27 ~P~~~i~g~~D~~~p--~~~~~~~~~~~~~~~~~~l~-~aG-----H~p~l~~p~~~~~~l~ 80 (87)
+|..+.+|-.|...+ ......+.++++++-++.++ |-| -+|.+++.+.+++.+.
T Consensus 24 ~P~ii~HGigd~c~~~~~~~~~q~l~~~~g~~v~~leig~g~~~s~l~pl~~Qv~~~ce~v~ 85 (296)
T KOG2541|consen 24 VPVIVWHGIGDSCSSLSMANLTQLLEELPGSPVYCLEIGDGIKDSSLMPLWEQVDVACEKVK 85 (296)
T ss_pred CCEEEEeccCcccccchHHHHHHHHHhCCCCeeEEEEecCCcchhhhccHHHHHHHHHHHHh
Confidence 999999999999887 44444566778887777666 334 3466677777777665
No 160
>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]
Probab=38.37 E-value=95 Score=23.56 Aligned_cols=58 Identities=9% Similarity=0.126 Sum_probs=45.7
Q ss_pred cCCcceEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCccCCcChHHHHHHHHHH
Q 034686 24 YGSVKRVYLVCEEDIGLPKHFQHWMIQNYPVNEVMEIKGGDHMAMLSEPQKLCDCLSQI 82 (87)
Q Consensus 24 ~~~~P~~~i~g~~D~~~p~~~~~~~~~~~~~~~~~~l~~aGH~p~l~~p~~~~~~l~~~ 82 (87)
..-..+..|.|.+|..+..+..+.-++..-..-....| +.|-.|.+.-.++++++.++
T Consensus 176 m~G~~VV~V~~~~~G~VDlddLk~k~~~~~AalMiTnP-sT~GvFE~~I~ei~~ivH~~ 233 (496)
T COG1003 176 MAGFKVVVVKCDENGNVDLDDLRAKAEDNLAALMITNP-STLGVFEEDIREICEIVHEA 233 (496)
T ss_pred hcCceEEEEecCCCCCccHHHHHHHhccceeEEEeccC-cccccchhhHHHHHHHHHHc
Confidence 34468999999999999999888766643344455566 89999999999999988764
No 161
>cd03347 eu_PheOH Eukaryotic phenylalanine-4-hydroxylase (eu_PheOH); a member of the biopterin-dependent aromatic amino acid hydroxylase family of non-heme, iron(II)-dependent enzymes that also includes prokaryotic phenylalanine-4-hydroxylase (pro_PheOH), eukaryotic tyrosine hydroxylase (TyrOH) and eukaryotic tryptophan hydroxylase (TrpOH). PheOH catalyzes the first and rate-limiting step in the metabolism of the amino acid L-phenylalanine (L-Phe), the hydroxylation of L-Phe to L-tyrosine (L-Tyr). It uses (6R)-L-erythro-5,6,7,8-tetrahydrobiopterin (BH4) as the physiological electron donor. The catalytic activity of the tetrameric enzyme is tightly regulated by the binding of L-Phe and BH4 as well as by phosphorylation. Mutations in the human enzyme are linked to a severe variant of phenylketonuria.
Probab=37.06 E-value=15 Score=26.10 Aligned_cols=18 Identities=11% Similarity=0.416 Sum_probs=13.2
Q ss_pred CCCccCCcChHHHHHHHHH
Q 034686 63 GDHMAMLSEPQKLCDCLSQ 81 (87)
Q Consensus 63 aGH~p~l~~p~~~~~~l~~ 81 (87)
.||+||+.+|. +|+...+
T Consensus 170 ~GHvPlLadp~-FA~f~q~ 187 (306)
T cd03347 170 LGHVPLFADPS-FAQFSQE 187 (306)
T ss_pred hccchhhcCHH-HHHHHHH
Confidence 49999999984 5555444
No 162
>PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively []. It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A ....
Probab=36.29 E-value=1.3e+02 Score=20.09 Aligned_cols=43 Identities=7% Similarity=-0.263 Sum_probs=24.6
Q ss_pred ccCCcceEEEEeCCCCCCCHHHHHHHHHhCCCC----cEEEecCCCCc
Q 034686 23 GYGSVKRVYLVCEEDIGLPKHFQHWMIQNYPVN----EVMEIKGGDHM 66 (87)
Q Consensus 23 ~~~~~P~~~i~g~~D~~~p~~~~~~~~~~~~~~----~~~~l~~aGH~ 66 (87)
...++|++.+.|-.|........+......... ++++=+ .+|+
T Consensus 225 ~~i~vP~l~v~Gw~D~~~~~~~~~~~~~l~~~~~~~~~Liigp-w~H~ 271 (272)
T PF02129_consen 225 DKIDVPVLIVGGWYDTLFLRGALRAYEALRAPGSKPQRLIIGP-WTHG 271 (272)
T ss_dssp GG--SEEEEEEETTCSSTSHHHHHHHHHHCTTSTC-EEEEEES-ESTT
T ss_pred hhCCCCEEEecccCCcccchHHHHHHHHhhcCCCCCCEEEEeC-CCCC
Confidence 445599999999999555554444433332222 444443 7775
No 163
>PF06107 DUF951: Bacterial protein of unknown function (DUF951); InterPro: IPR009296 This family consists of several short hypothetical bacterial proteins of unknown function.
Probab=35.89 E-value=12 Score=20.06 Aligned_cols=14 Identities=21% Similarity=0.271 Sum_probs=11.6
Q ss_pred ecCCCCccCCcChH
Q 034686 60 IKGGDHMAMLSEPQ 73 (87)
Q Consensus 60 l~~aGH~p~l~~p~ 73 (87)
..||||..|+.+++
T Consensus 34 C~gCg~~imlpR~~ 47 (57)
T PF06107_consen 34 CLGCGRQIMLPRSK 47 (57)
T ss_pred ECCCCCEEEEeHHH
Confidence 55799999999865
No 164
>PF14714 KH_dom-like: KH-domain-like of EngA bacterial GTPase enzymes, C-terminal; PDB: 2HJG_A 1MKY_A.
Probab=31.29 E-value=1e+02 Score=17.23 Aligned_cols=32 Identities=9% Similarity=0.156 Sum_probs=22.5
Q ss_pred ccccCCcceEEEEeCCCCCCCHHHHHHHHHhC
Q 034686 21 DEGYGSVKRVYLVCEEDIGLPKHFQHWMIQNY 52 (87)
Q Consensus 21 ~~~~~~~P~~~i~g~~D~~~p~~~~~~~~~~~ 52 (87)
.+.-..-|+.+++|.+...++.++.+.+.+..
T Consensus 33 tQv~~~PPtFv~f~N~~~~~~~sY~ryL~n~l 64 (80)
T PF14714_consen 33 TQVGTRPPTFVLFVNDPELLPESYKRYLENQL 64 (80)
T ss_dssp EEEETTTTEEEEEES-CCC--HHHHHHHHHHH
T ss_pred EeCCCCCCEEEEEeCCcccCCHHHHHHHHHHH
Confidence 34445579999999999999999998776653
No 165
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=31.24 E-value=73 Score=20.06 Aligned_cols=30 Identities=17% Similarity=0.205 Sum_probs=22.9
Q ss_pred CCcEEEecCCC-CccCCcCh-HHHHHHHHHHHH
Q 034686 54 VNEVMEIKGGD-HMAMLSEP-QKLCDCLSQISL 84 (87)
Q Consensus 54 ~~~~~~l~~aG-H~p~l~~p-~~~~~~l~~~~~ 84 (87)
......++ .| |.++...+ +.+.+.+.+|..
T Consensus 66 ~ydal~ip-GG~~~~~~~~~~~~~~~~v~~~~~ 97 (188)
T COG0693 66 DYDALVIP-GGDHGPEYLRPDPDLLAFVRDFYA 97 (188)
T ss_pred HCCEEEEC-CCccchhhccCcHHHHHHHHHHHH
Confidence 56788999 56 99999998 666666666543
No 166
>COG4813 ThuA Trehalose utilization protein [Carbohydrate transport and metabolism]
Probab=29.43 E-value=1.4e+02 Score=20.19 Aligned_cols=49 Identities=10% Similarity=0.174 Sum_probs=32.7
Q ss_pred cccccccCCcceEEEEeCCCCCC-CHHHHHHHHHh-CCCCcEEEecCCCCcc
Q 034686 18 KFSDEGYGSVKRVYLVCEEDIGL-PKHFQHWMIQN-YPVNEVMEIKGGDHMA 67 (87)
Q Consensus 18 ~~~~~~~~~~P~~~i~g~~D~~~-p~~~~~~~~~~-~~~~~~~~l~~aGH~p 67 (87)
.++.++..+..+++-||-.|.-- ..+...+.+++ +.+--+.++- +||+.
T Consensus 55 GLse~rLa~tDVLiWWGH~~Hg~V~D~iVeRV~kRV~EGMGLiVLH-SGHfS 105 (261)
T COG4813 55 GLSEERLAKTDVLIWWGHKDHGAVEDEIVERVQKRVWEGMGLIVLH-SGHFS 105 (261)
T ss_pred CccHhhhhccceEEEeccccccccchHHHHHHHHHHhcccceEEEe-ccchh
Confidence 56777788889999999887643 34444444444 3454566776 89974
No 167
>PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=29.06 E-value=1.1e+02 Score=21.28 Aligned_cols=46 Identities=11% Similarity=0.034 Sum_probs=28.0
Q ss_pred cceEEEEeCCCC---------CCCHHHH-HHHHHhCC-CCcEEEecCCCCccCCcCh
Q 034686 27 VKRVYLVCEEDI---------GLPKHFQ-HWMIQNYP-VNEVMEIKGGDHMAMLSEP 72 (87)
Q Consensus 27 ~P~~~i~g~~D~---------~~p~~~~-~~~~~~~~-~~~~~~l~~aGH~p~l~~p 72 (87)
+|+++|-+..+. ..|.... +++-+... ..-.+++.+.||+=|++..
T Consensus 155 ~P~lviGtGLg~~~~~~~~~~CaP~g~n~~~Ff~~~~~p~~~~v~~~~GH~d~LDd~ 211 (259)
T PF12740_consen 155 MPALVIGTGLGGEPRNPLFPPCAPAGVNYREFFDECKPPSWHFVAKDYGHMDFLDDD 211 (259)
T ss_pred CCeEEEecccCcccccccCCCCCCCCCCHHHHHHhcCCCEEEEEeCCCCchHhhcCC
Confidence 899888666553 4454433 33434443 3333345679999999877
No 168
>TIGR01269 Tyr_3_monoox tyrosine 3-monooxygenase, tetrameric. This model describes tyrosine 3-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tryptophan 5-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=28.20 E-value=26 Score=26.29 Aligned_cols=18 Identities=28% Similarity=0.420 Sum_probs=13.2
Q ss_pred CCCccCCcChHHHHHHHHH
Q 034686 63 GDHMAMLSEPQKLCDCLSQ 81 (87)
Q Consensus 63 aGH~p~l~~p~~~~~~l~~ 81 (87)
.||+||+.+|. +++...+
T Consensus 293 ~GHvPlLadp~-FA~F~q~ 310 (457)
T TIGR01269 293 LGHMPMLADRQ-FAQFSQE 310 (457)
T ss_pred hcccccccCHH-HHHHHHH
Confidence 49999999984 5555444
No 169
>PRK14056 phenylalanine 4-monooxygenase; Provisional
Probab=26.49 E-value=28 Score=26.85 Aligned_cols=19 Identities=21% Similarity=0.581 Sum_probs=14.1
Q ss_pred CCCccCCcChHHHHHHHHHH
Q 034686 63 GDHMAMLSEPQKLCDCLSQI 82 (87)
Q Consensus 63 aGH~p~l~~p~~~~~~l~~~ 82 (87)
.||+||+.+|+ +++.+.+|
T Consensus 125 ~GH~P~LadP~-fAdf~q~~ 143 (578)
T PRK14056 125 AGHAPILADPT-YAEYLRRF 143 (578)
T ss_pred hccchhhcCHH-HHHHHHHH
Confidence 69999999985 55555543
No 170
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=26.36 E-value=29 Score=25.94 Aligned_cols=18 Identities=6% Similarity=0.270 Sum_probs=13.1
Q ss_pred CCCccCCcChHHHHHHHHH
Q 034686 63 GDHMAMLSEPQKLCDCLSQ 81 (87)
Q Consensus 63 aGH~p~l~~p~~~~~~l~~ 81 (87)
.||+||+.+|. +|+...+
T Consensus 272 ~GHvPlla~p~-fA~f~q~ 289 (436)
T TIGR01268 272 LGHVPLFADVE-FAQFSQE 289 (436)
T ss_pred hccchhhCCHH-HHHHHHH
Confidence 39999999984 5555444
No 171
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=26.16 E-value=29 Score=26.11 Aligned_cols=18 Identities=22% Similarity=0.503 Sum_probs=13.1
Q ss_pred CCCccCCcChHHHHHHHHH
Q 034686 63 GDHMAMLSEPQKLCDCLSQ 81 (87)
Q Consensus 63 aGH~p~l~~p~~~~~~l~~ 81 (87)
.||+||+.+|. +|+...+
T Consensus 299 ~GHvPlLadp~-FA~f~q~ 316 (464)
T TIGR01270 299 LGHMPLLADPS-FAQFSQE 316 (464)
T ss_pred hcccchhcCHH-HHHHHHH
Confidence 49999999984 5555444
No 172
>KOG1579 consensus Homocysteine S-methyltransferase [Amino acid transport and metabolism]
Probab=25.47 E-value=1.4e+02 Score=21.44 Aligned_cols=41 Identities=5% Similarity=-0.021 Sum_probs=27.2
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCccCCc
Q 034686 29 RVYLVCEEDIGLPKHFQHWMIQNYPVNEVMEIKGGDHMAMLS 70 (87)
Q Consensus 29 ~~~i~g~~D~~~p~~~~~~~~~~~~~~~~~~l~~aGH~p~l~ 70 (87)
..=|.|...+.+.+-.-.-+ ...+...+.++||+||...-+
T Consensus 225 ~IGvNC~~~~~~~~~~~~L~-~~~~~~~llvYPNsGe~yd~~ 265 (317)
T KOG1579|consen 225 GIGVNCVSPNFVEPLLKELM-AKLTKIPLLVYPNSGEVYDNE 265 (317)
T ss_pred EEEeccCCchhccHHHHHHh-hccCCCeEEEecCCCCCCccc
Confidence 34456666666655555444 455677889999999887544
No 173
>cd08663 DAP_dppA_1 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=23.84 E-value=2.6e+02 Score=19.50 Aligned_cols=58 Identities=14% Similarity=0.048 Sum_probs=38.6
Q ss_pred cccCCcceEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEec-CCC-CccCCcChHHHHHHHHHHHHH
Q 034686 22 EGYGSVKRVYLVCEEDIGLPKHFQHWMIQNYPVNEVMEIK-GGD-HMAMLSEPQKLCDCLSQISLK 85 (87)
Q Consensus 22 ~~~~~~P~~~i~g~~D~~~p~~~~~~~~~~~~~~~~~~l~-~aG-H~p~l~~p~~~~~~l~~~~~~ 85 (87)
.++-.+|+.+|.|++ .++ .+..+..|..+...++ +.| ++.---.|++..+.|.+.+++
T Consensus 143 Ag~~gVPV~lVsGDd-~~~-----~ea~~~~p~i~tv~vK~~~gr~aa~~~~p~~a~~~I~~~a~~ 202 (266)
T cd08663 143 AGEYGVPVVLVTGDD-AAC-----AEARELGPGVETVAVKEAIGRFAARCLPPAEARALIREAAAE 202 (266)
T ss_pred HhhcCCCEEEEecCH-HHH-----HHHHhhCCCcEEEEEecccCCCccccCCHHHHHHHHHHHHHH
Confidence 445569999999963 322 2223346777777777 456 455566789999988887743
No 174
>PRK04940 hypothetical protein; Provisional
Probab=23.70 E-value=2.2e+02 Score=18.61 Aligned_cols=52 Identities=8% Similarity=0.046 Sum_probs=33.2
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHHhCCCC-cEEEecCCCCccCCcChHHHHHHHHHHHH
Q 034686 28 KRVYLVCEEDIGLPKHFQHWMIQNYPVN-EVMEIKGGDHMAMLSEPQKLCDCLSQISL 84 (87)
Q Consensus 28 P~~~i~g~~D~~~p~~~~~~~~~~~~~~-~~~~l~~aGH~p~l~~p~~~~~~l~~~~~ 84 (87)
..+++..+.|.+++...+. +...+. ++.+.+|..|. ++.=++....|.+|++
T Consensus 126 r~~vllq~gDEvLDyr~a~---~~y~~~y~~~v~~GGdH~--f~~fe~~l~~I~~F~~ 178 (180)
T PRK04940 126 RCLVILSRNDEVLDSQRTA---EELHPYYEIVWDEEQTHK--FKNISPHLQRIKAFKT 178 (180)
T ss_pred cEEEEEeCCCcccCHHHHH---HHhccCceEEEECCCCCC--CCCHHHHHHHHHHHHh
Confidence 3589999999999866554 233343 67778877776 2333445555666653
No 175
>PF01341 Glyco_hydro_6: Glycosyl hydrolases family 6; InterPro: IPR016288 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The 1,4-beta cellobiohydrolase family plays a central role in the recycling of plant biomass. The biological conversion of cellulose to glucose generally requires three types of hydrolytic enzymes: Endoglucanases, which cut internal beta-1,4-glucosidic bonds; Exocellobiohydrolases that cut the dissaccharide cellobiose from the non-reducing end of the cellulose polymer chain; and Beta-1,4-glucosidases, which hydrolyze the cellobiose and other short cello-oligosaccharides to glucose.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030245 cellulose catabolic process; PDB: 2BOF_X 2BOG_X 1TML_A 3RPT_A 2BOD_X 2BOE_X 1DYS_B 3VOI_A 3VOG_A 3VOJ_A ....
Probab=23.48 E-value=65 Score=22.75 Aligned_cols=26 Identities=15% Similarity=0.203 Sum_probs=14.7
Q ss_pred EEEecCCCCccCC-----cChHHHHHHHHHH
Q 034686 57 VMEIKGGDHMAML-----SEPQKLCDCLSQI 82 (87)
Q Consensus 57 ~~~l~~aGH~p~l-----~~p~~~~~~l~~~ 82 (87)
+.++-++||.-++ ..++++++.|...
T Consensus 157 a~vYlDaG~~~Wlgw~~n~~a~~~a~~l~~a 187 (298)
T PF01341_consen 157 AWVYLDAGHSGWLGWDTNPSADEIAKVLRQA 187 (298)
T ss_dssp EEEEEE---HHHHTSHHHHHHHHHHHHHHHT
T ss_pred eEEEEeccchhhcCCCCCcCHHHHHHHHHhc
Confidence 4444449997777 3578888887654
No 176
>cd08770 DAP_dppA_3 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=23.47 E-value=2.6e+02 Score=19.44 Aligned_cols=58 Identities=16% Similarity=0.078 Sum_probs=38.7
Q ss_pred cccCCcceEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEec-CCCCccCCcChHHHHHHHHHHHHH
Q 034686 22 EGYGSVKRVYLVCEEDIGLPKHFQHWMIQNYPVNEVMEIK-GGDHMAMLSEPQKLCDCLSQISLK 85 (87)
Q Consensus 22 ~~~~~~P~~~i~g~~D~~~p~~~~~~~~~~~~~~~~~~l~-~aGH~p~l~~p~~~~~~l~~~~~~ 85 (87)
.++-.+|+.+|.|++ .++ .+..+..|..+.+.++ +.|....--.|++..+.|.+.+++
T Consensus 143 Ag~~gVPV~lvsGD~-~~~-----~ea~~~~P~~~tv~vK~~~g~aa~~~~p~~a~~~I~~~~~~ 201 (263)
T cd08770 143 AAYLGVPVVFVSGDA-GLC-----AEAKELNPNIVTVPVKEGFGGATISIHPGLACKEIRKGVKK 201 (263)
T ss_pred HhhcCCCEEEEecCH-HHH-----HHHHHhCCCceEEEeeeeeccccccCCHHHHHHHHHHHHHH
Confidence 345569999999964 332 2223346877777776 446555556789999999887754
No 177
>PF10932 DUF2783: Protein of unknown function (DUF2783); InterPro: IPR021233 This is a bacterial family of uncharacterised protein.
Probab=22.90 E-value=1e+02 Score=16.66 Aligned_cols=17 Identities=18% Similarity=0.434 Sum_probs=13.7
Q ss_pred ccCCcChHHHHHHHHHH
Q 034686 66 MAMLSEPQKLCDCLSQI 82 (87)
Q Consensus 66 ~p~l~~p~~~~~~l~~~ 82 (87)
.|.+.+||.|.+.|.+.
T Consensus 4 ~pnl~~pD~fY~~Li~a 20 (60)
T PF10932_consen 4 TPNLADPDDFYEALIEA 20 (60)
T ss_pred CCCCCChhHHHHHHHHH
Confidence 37788999999988764
No 178
>PRK15450 signal transduction protein PmrD; Provisional
Probab=22.49 E-value=1e+02 Score=17.72 Aligned_cols=33 Identities=9% Similarity=0.058 Sum_probs=26.6
Q ss_pred eCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCcc
Q 034686 34 CEEDIGLPKHFQHWMIQNYPVNEVMEIKGGDHMA 67 (87)
Q Consensus 34 g~~D~~~p~~~~~~~~~~~~~~~~~~l~~aGH~p 67 (87)
-..|.+-|...++.-.++.+...+.++. |.|..
T Consensus 41 ~~gDlLsPL~dA~YciNr~~~~t~Kii~-As~Ys 73 (85)
T PRK15450 41 KVGDLLSPLQNALYCINREKLQTLKILS-ASCYS 73 (85)
T ss_pred CcccccccchhhhhhhcCCCCceEEEEe-ccccC
Confidence 3568888988888888888887888887 88864
No 179
>COG4553 DepA Poly-beta-hydroxyalkanoate depolymerase [Lipid metabolism]
Probab=22.45 E-value=2.7e+02 Score=20.35 Aligned_cols=73 Identities=11% Similarity=0.106 Sum_probs=50.1
Q ss_pred cccCcccccccCCcceEEEEeCCCCCCC---HHHHHHHHHhCCCC--cEEEecCCCCccCCcC---hHHHHHHHHHHHHH
Q 034686 14 SKASKFSDEGYGSVKRVYLVCEEDIGLP---KHFQHWMIQNYPVN--EVMEIKGGDHMAMLSE---PQKLCDCLSQISLK 85 (87)
Q Consensus 14 ~~~~~~~~~~~~~~P~~~i~g~~D~~~p---~~~~~~~~~~~~~~--~~~~l~~aGH~p~l~~---p~~~~~~l~~~~~~ 85 (87)
.++.+.......++-.+-|-|+.|.+-- .+.+..+..+.|.. +.++=+++||..-++- -+++.-.|.+|+..
T Consensus 327 hrg~~vdp~~I~~~aL~tvEGEnDDIsgvGQTkAA~~LC~nIpe~mk~hy~qp~vGHYGVFnGsrfr~eIvPri~dFI~~ 406 (415)
T COG4553 327 HRGKPVDPTAITNVALFTVEGENDDISGVGQTKAAHDLCSNIPEDMKQHYMQPDVGHYGVFNGSRFREEIVPRIRDFIRR 406 (415)
T ss_pred ecCCcCChhheeceeEEEeecccccccccchhHHHHHHHhcChHHHHHHhcCCCCCccceeccchHHHHHHHHHHHHHHH
Confidence 3344555556666778889999998653 34556677777742 4555678999977753 56777788888876
Q ss_pred h
Q 034686 86 Y 86 (87)
Q Consensus 86 ~ 86 (87)
|
T Consensus 407 ~ 407 (415)
T COG4553 407 Y 407 (415)
T ss_pred h
Confidence 6
No 180
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=22.26 E-value=1.5e+02 Score=21.09 Aligned_cols=21 Identities=24% Similarity=0.344 Sum_probs=17.2
Q ss_pred ccCCcChHHHHHHHHHHHHHh
Q 034686 66 MAMLSEPQKLCDCLSQISLKY 86 (87)
Q Consensus 66 ~p~l~~p~~~~~~l~~~~~~~ 86 (87)
+|+|..++++.+.|.++++.+
T Consensus 29 ~plW~~~~~L~~~l~~~~~~~ 49 (318)
T TIGR03123 29 CPLWKGNDKLAETLKEISQDL 49 (318)
T ss_pred CcccCCchHHHHHHHHHHHhc
Confidence 799999999999888877543
No 181
>PF08257 Sulfakinin: Sulfakinin family; InterPro: IPR013259 The sulfakinin (SK) family of neuropeptides have only been identified in crustaceans and insects. For most species there is the potential for producing two sulfakinin peptides, one has a short sulfakinin sequence. The function of the sulfakinins is difficult to assess. For the Periplaneta americana (American cockroach), various forms of the endogenous sulfakinins have been shown to be active on the hindgut, and also on the heart. In Calliphora vomitoria (Blue blowfly) the peptides act as neurotransmitters or neuromodulators, linking the brain with all thoracic and abdominal ganglia. In adults of Penaeus monodon (Penoeid shrimp) they appear to be restricted to a few neurones in the brain with a neural pathway extending along to the ventral thoracic and abdominal ganglia [].
Probab=21.49 E-value=47 Score=11.03 Aligned_cols=6 Identities=33% Similarity=0.329 Sum_probs=3.3
Q ss_pred CCCCcc
Q 034686 62 GGDHMA 67 (87)
Q Consensus 62 ~aGH~p 67 (87)
+-||+-
T Consensus 3 dyghmr 8 (9)
T PF08257_consen 3 DYGHMR 8 (9)
T ss_pred cccccc
Confidence 356763
No 182
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=21.34 E-value=1.6e+02 Score=19.71 Aligned_cols=30 Identities=23% Similarity=0.246 Sum_probs=20.5
Q ss_pred CCcEEEecCCCCccCC--cChHHHHHHHHHHHH
Q 034686 54 VNEVMEIKGGDHMAML--SEPQKLCDCLSQISL 84 (87)
Q Consensus 54 ~~~~~~l~~aGH~p~l--~~p~~~~~~l~~~~~ 84 (87)
.+..+.++ .||-+|. -+-+.+.+++..|-+
T Consensus 96 dYDav~iP-GG~g~~~dl~~~~~l~~ll~~f~~ 127 (232)
T cd03148 96 EYAAVFIP-GGHGALIGIPESQDVAAALQWAIK 127 (232)
T ss_pred hceEEEEC-CCCCChhhcccCHHHHHHHHHHHH
Confidence 35667888 7999985 455567777766643
No 183
>PRK09375 quinolinate synthetase; Provisional
Probab=20.56 E-value=1.6e+02 Score=21.05 Aligned_cols=47 Identities=19% Similarity=0.243 Sum_probs=31.4
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCccCCcC--hHHHHHHHH
Q 034686 29 RVYLVCEEDIGLPKHFQHWMIQNYPVNEVMEIKGGDHMAMLSE--PQKLCDCLS 80 (87)
Q Consensus 29 ~~~i~g~~D~~~p~~~~~~~~~~~~~~~~~~l~~aGH~p~l~~--p~~~~~~l~ 80 (87)
..+|.|++-++ ..++.++.|..+++....+|.|+.+.+ ++.+.+.|.
T Consensus 243 ~~~iigTE~~L-----~~~l~~~~P~K~fi~~~~~~~C~~Mk~~tle~l~~~L~ 291 (319)
T PRK09375 243 KKFIVGTEIGI-----VHRLQKANPDKEFIPARSCAHCPTMKMITLEKLLEALE 291 (319)
T ss_pred CeEEEEccHHH-----HHHHHHHCCCCEEEECCCCCcCcChhhcCHHHHHHHHh
Confidence 45777876444 346777788877766555688887754 666666654
Done!