BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>034688
MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVG
ADENLLMKDHTHKFVNKGGEIGGIVIS

High Scoring Gene Products

Symbol, full name Information P value
ZDS
zeta-carotene desaturase
protein from Arabidopsis thaliana 1.8e-32
PDS3
phytoene desaturase 3
protein from Arabidopsis thaliana 9.5e-09

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  034688
        (87 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2114789 - symbol:ZDS "zeta-carotene desaturase...   358  1.8e-32   1
TAIR|locus:2129515 - symbol:PDS3 "phytoene desaturase 3" ...   141  9.5e-09   1


>TAIR|locus:2114789 [details] [associations]
            symbol:ZDS "zeta-carotene desaturase" species:3702
            "Arabidopsis thaliana" [GO:0005739 "mitochondrion" evidence=ISM]
            [GO:0016117 "carotenoid biosynthetic process" evidence=IEA]
            [GO:0016491 "oxidoreductase activity" evidence=IEA] [GO:0016719
            "carotene 7,8-desaturase activity" evidence=IEA;IDA] [GO:0055114
            "oxidation-reduction process" evidence=IEA] [GO:0009941
            "chloroplast envelope" evidence=IDA] [GO:0009507 "chloroplast"
            evidence=IDA] [GO:0016120 "carotene biosynthetic process"
            evidence=IDA] UniPathway:UPA00803 InterPro:IPR002937
            InterPro:IPR014103 Pfam:PF01593 InterPro:IPR016040 EMBL:CP002686
            GenomeReviews:BA000014_GR GO:GO:0000166 Gene3D:3.40.50.720
            GO:GO:0009941 EMBL:AC009465 GO:GO:0016117 GO:GO:0009509
            UniGene:At.24092 UniGene:At.71000 eggNOG:COG3349
            HOGENOM:HOG000150110 EMBL:U38550 EMBL:AF121947 EMBL:AY059920
            EMBL:AY072096 EMBL:AY096583 IPI:IPI00541621 RefSeq:NP_187138.1
            RefSeq:NP_974222.1 ProteinModelPortal:Q38893 SMR:Q38893
            STRING:Q38893 PaxDb:Q38893 PRIDE:Q38893 DNASU:819647
            EnsemblPlants:AT3G04870.1 EnsemblPlants:AT3G04870.2 GeneID:819647
            KEGG:ath:AT3G04870 TAIR:At3g04870 InParanoid:Q38893 KO:K00514
            OMA:DGNHIEM PhylomeDB:Q38893 ProtClustDB:PLN02487
            BioCyc:ARA:AT3G04870-MONOMER BioCyc:MetaCyc:AT3G04870-MONOMER
            Genevestigator:Q38893 GO:GO:0052887 GO:GO:0052886 GO:GO:0016719
            GO:GO:0052889 TIGRFAMs:TIGR02732 Uniprot:Q38893
        Length = 558

 Score = 358 (131.1 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 66/82 (80%), Positives = 74/82 (90%)

Query:     1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVG 60
             MSTAVELLDQGHEVDIY+ R+FIGGKV SFV +RGNHIE+ LHVFFGCYNNLFRL KKVG
Sbjct:    69 MSTAVELLDQGHEVDIYDSRTFIGGKVGSFVDRRGNHIEMGLHVFFGCYNNLFRLMKKVG 128

Query:    61 ADENLLMKDHTHKFVNKGGEIG 82
             A++NLL+KDHTH F+NK G IG
Sbjct:   129 AEKNLLVKDHTHTFINKDGTIG 150


>TAIR|locus:2129515 [details] [associations]
            symbol:PDS3 "phytoene desaturase 3" species:3702
            "Arabidopsis thaliana" [GO:0009507 "chloroplast"
            evidence=ISM;IDA;TAS] [GO:0009536 "plastid" evidence=IEA]
            [GO:0016117 "carotenoid biosynthetic process" evidence=IEA;IDA]
            [GO:0016491 "oxidoreductase activity" evidence=IEA] [GO:0016705
            "oxidoreductase activity, acting on paired donors, with
            incorporation or reduction of molecular oxygen" evidence=IEA]
            [GO:0055114 "oxidation-reduction process" evidence=IEA] [GO:0009941
            "chloroplast envelope" evidence=IDA] [GO:0009534 "chloroplast
            thylakoid" evidence=IDA] [GO:0010155 "regulation of proton
            transport" evidence=RCA] [GO:0046777 "protein autophosphorylation"
            evidence=RCA] [GO:0016120 "carotene biosynthetic process"
            evidence=IDA] [GO:0016166 "phytoene dehydrogenase activity"
            evidence=IDA] UniPathway:UPA00803 InterPro:IPR002937
            InterPro:IPR014102 Pfam:PF01593 EMBL:CP002687
            GenomeReviews:CT486007_GR EMBL:Z97335 EMBL:AL161538 GO:GO:0009941
            GO:GO:0009534 GO:GO:0016117 GO:GO:0016705 GO:GO:0009509
            GO:GO:0016166 EMBL:L16237 EMBL:AF360196 EMBL:AY040007
            IPI:IPI00523820 PIR:F71403 RefSeq:NP_193157.1 UniGene:At.247
            ProteinModelPortal:Q07356 SMR:Q07356 STRING:Q07356 PaxDb:Q07356
            PRIDE:Q07356 EnsemblPlants:AT4G14210.1 GeneID:827061
            KEGG:ath:AT4G14210 TAIR:At4g14210 eggNOG:COG3349
            HOGENOM:HOG000150110 InParanoid:Q07356 KO:K02293 PhylomeDB:Q07356
            ProtClustDB:PLN02612 Genevestigator:Q07356 TIGRFAMs:TIGR02731
            Uniprot:Q07356
        Length = 566

 Score = 141 (54.7 bits), Expect = 9.5e-09, P = 9.5e-09
 Identities = 31/82 (37%), Positives = 49/82 (59%)

Query:     1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVG 60
             +STA  L D GH+  + E R  +GGK+A++  + G+  E  LH+FFG Y N+  L  ++G
Sbjct:   105 LSTAKYLADAGHKPLLLEARDVLGGKIAAWKDEDGDWYETGLHIFFGAYPNVQNLFGELG 164

Query:    61 ADENLLMKDHTHKFV--NKGGE 80
              ++ L  K+H+  F   +K GE
Sbjct:   165 INDRLQWKEHSMIFAMPSKPGE 186


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.142   0.423    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       87        87   0.00091  102 3  11 22  0.43    29
                                                     29  0.48    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  495 (53 KB)
  Total size of DFA:  99 KB (2071 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.77u 0.23s 9.00t   Elapsed:  00:00:01
  Total cpu time:  8.77u 0.23s 9.00t   Elapsed:  00:00:01
  Start:  Thu May  9 23:15:26 2013   End:  Thu May  9 23:15:27 2013

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