BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034688
(87 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XAF|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (+)-Cis-2-Phenylcyclopropyl-1-Amine
pdb|2XAG|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (-)-Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAH|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With (+)-
Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAJ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
(-)-Trans- 2-Phenylcyclopropyl-1-Amine
pdb|2XAQ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2584, 13b)
pdb|2XAS|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2580, 14e)
Length = 852
Score = 28.9 bits (63), Expect = 0.72, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Query: 1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHI 38
++ A +L G +V + E R +GG+VA+F ++GN++
Sbjct: 291 LAAARQLQSFGMDVTLLEARDRVGGRVATF--RKGNYV 326
>pdb|2X0L|A Chain A, Crystal Structure Of A Neuro-Specific Splicing Variant Of
Human Histone Lysine Demethylase Lsd1
Length = 734
Score = 28.9 bits (63), Expect = 0.72, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Query: 1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHI 38
++ A +L G +V + E R +GG+VA+F ++GN++
Sbjct: 169 LAAARQLQSFGMDVTLLEARDRVGGRVATF--RKGNYV 204
>pdb|2EJR|A Chain A, Lsd1-Tranylcypromine Complex
pdb|2Z3Y|A Chain A, Crystal Structure Of Lysine-Specific Demethylase1
pdb|2Z5U|A Chain A, Crystal Structure Of Lysine-Specific Histone Demethylase 1
pdb|3ABT|A Chain A, Crystal Structure Of Lsd1 In Complex With Trans-2-
Pentafluorophenylcyclopropylamine
pdb|3ABU|A Chain A, Crystal Structure Of Lsd1 In Complex With A 2-Pcpa
Derivative, S1201
Length = 662
Score = 28.9 bits (63), Expect = 0.72, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Query: 1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHI 38
++ A +L G +V + E R +GG+VA+F ++GN++
Sbjct: 120 LAAARQLQSFGMDVTLLEARDRVGGRVATF--RKGNYV 155
>pdb|2DW4|A Chain A, Crystal Structure Of Human Lsd1 At 2.3 A Resolution
Length = 660
Score = 28.9 bits (63), Expect = 0.72, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Query: 1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHI 38
++ A +L G +V + E R +GG+VA+F ++GN++
Sbjct: 120 LAAARQLQSFGMDVTLLEARDRVGGRVATF--RKGNYV 155
>pdb|2V1D|A Chain A, Structural Basis Of Lsd1-Corest Selectivity In Histone H3
Recognition
pdb|2Y48|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A N-
Terminal Snail Peptide
Length = 730
Score = 28.9 bits (63), Expect = 0.72, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Query: 1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHI 38
++ A +L G +V + E R +GG+VA+F ++GN++
Sbjct: 169 LAAARQLQSFGMDVTLLEARDRVGGRVATF--RKGNYV 204
>pdb|2IW5|A Chain A, Structural Basis For Corest-dependent Demethylation Of
Nucleosomes By The Human Lsd1 Histone Demethylase
pdb|2UXN|A Chain A, Structural Basis Of Histone Demethylation By Lsd1 Revealed
By Suicide Inactivation
pdb|2UXX|A Chain A, Human Lsd1 Histone Demethylase-Corest In Complex With An
Fad-Tranylcypromine Adduct
Length = 666
Score = 28.9 bits (63), Expect = 0.72, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Query: 1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHI 38
++ A +L G +V + E R +GG+VA+F ++GN++
Sbjct: 121 LAAARQLQSFGMDVTLLEARDRVGGRVATF--RKGNYV 156
>pdb|2HKO|A Chain A, Crystal Structure Of Lsd1
Length = 664
Score = 28.9 bits (63), Expect = 0.72, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Query: 1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHI 38
++ A +L G +V + E R +GG+VA+F ++GN++
Sbjct: 120 LAAARQLQSFGMDVTLLEARDRVGGRVATF--RKGNYV 155
>pdb|2H94|A Chain A, Crystal Structure And Mechanism Of Human Lysine-Specific
Demethylase-1
Length = 664
Score = 28.9 bits (63), Expect = 0.72, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Query: 1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHI 38
++ A +L G +V + E R +GG+VA+F ++GN++
Sbjct: 120 LAAARQLQSFGMDVTLLEARDRVGGRVATF--RKGNYV 155
>pdb|2BK4|A Chain A, Human Monoamine Oxidase B: I199f Mutant In Complex With
Rasagiline
pdb|2BK4|B Chain B, Human Monoamine Oxidase B: I199f Mutant In Complex With
Rasagiline
pdb|2BK5|A Chain A, Human Monoamine Oxidase B: I199f Mutant In Complex With
Isatin
pdb|2BK5|B Chain B, Human Monoamine Oxidase B: I199f Mutant In Complex With
Isatin
Length = 520
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 30/62 (48%)
Query: 1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVG 60
M+ A L D G V + E R +GG+ + ++ ++++ N + RL K++G
Sbjct: 17 MAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQNRILRLAKELG 76
Query: 61 AD 62
+
Sbjct: 77 LE 78
>pdb|1GOS|A Chain A, Human Monoamine Oxidase B
pdb|1GOS|B Chain B, Human Monoamine Oxidase B
pdb|1OJ9|A Chain A, Human Monoamine Oxidase B In Complex With
1,4-Diphenyl-2-Butene
pdb|1OJ9|B Chain B, Human Monoamine Oxidase B In Complex With
1,4-Diphenyl-2-Butene
pdb|1OJA|A Chain A, Human Monoamine Oxidase B In Complex With Isatin
pdb|1OJA|B Chain B, Human Monoamine Oxidase B In Complex With Isatin
pdb|1OJC|A Chain A, Human Monoamine Oxidase B In Complex With
N-(2-Aminoethyl)-P-Chlorobenzamide
pdb|1OJC|B Chain B, Human Monoamine Oxidase B In Complex With
N-(2-Aminoethyl)-P-Chlorobenzamide
pdb|1OJD|A Chain A, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|B Chain B, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|C Chain C, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|D Chain D, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|E Chain E, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|F Chain F, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|G Chain G, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|H Chain H, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|I Chain I, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|L Chain L, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1S2Q|A Chain A, Crystal Structure Of Maob In Complex With
N-Propargyl-1(R)-Aminoindan (Rasagiline)
pdb|1S2Q|B Chain B, Crystal Structure Of Maob In Complex With
N-Propargyl-1(R)-Aminoindan (Rasagiline)
pdb|1S2Y|A Chain A, Crystal Structure Of Maob In Complex With
N-propargyl-1(s)- Aminoindan
pdb|1S2Y|B Chain B, Crystal Structure Of Maob In Complex With
N-propargyl-1(s)- Aminoindan
pdb|1S3B|A Chain A, Crystal Structure Of Maob In Complex With N-Methyl-N-
Propargyl-1(R)-Aminoindan
pdb|1S3B|B Chain B, Crystal Structure Of Maob In Complex With N-Methyl-N-
Propargyl-1(R)-Aminoindan
pdb|1S3E|A Chain A, Crystal Structure Of Maob In Complex With 6-Hydroxy-N-
Propargyl-1(R)-Aminoindan
pdb|1S3E|B Chain B, Crystal Structure Of Maob In Complex With 6-Hydroxy-N-
Propargyl-1(R)-Aminoindan
pdb|2BK3|A Chain A, Human Monoamine Oxidase B In Complex With Farnesol
pdb|2BK3|B Chain B, Human Monoamine Oxidase B In Complex With Farnesol
pdb|2BYB|A Chain A, Human Monoamine Oxidase B In Complex With Deprenyl
pdb|2BYB|B Chain B, Human Monoamine Oxidase B In Complex With Deprenyl
pdb|2C64|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C64|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C65|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C65|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C66|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C66|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C67|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C67|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C70|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of
Tyr435 Mutant Proteins
pdb|2C70|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of
Tyr435 Mutant Proteins
pdb|2V5Z|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor Safinamide
pdb|2V5Z|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor Safinamide
pdb|2V60|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor
7-(3-Chlorobenzyloxy)-4-Carboxaldehyde-Coumarin
pdb|2V60|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor
7-(3-Chlorobenzyloxy)-4-Carboxaldehyde-Coumarin
pdb|2V61|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor 7-(3-Chlorobenzyloxy)-4-(Methylamino)methyl-
Coumarin
pdb|2V61|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor 7-(3-Chlorobenzyloxy)-4-(Methylamino)methyl-
Coumarin
pdb|2VRL|A Chain A, Structure Of Human Mao B In Complex With Benzylhydrazine
pdb|2VRL|B Chain B, Structure Of Human Mao B In Complex With Benzylhydrazine
pdb|2VRM|A Chain A, Structure Of Human Mao B In Complex With
Phenyethylhydrazine
pdb|2VRM|B Chain B, Structure Of Human Mao B In Complex With
Phenyethylhydrazine
pdb|2VZ2|A Chain A, Human Mao B In Complex With Mofegiline
pdb|2VZ2|B Chain B, Human Mao B In Complex With Mofegiline
pdb|2XCG|A Chain A, Tranylcypromine-Inhibited Human Monoamine Oxidase B In
Complex With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XCG|B Chain B, Tranylcypromine-Inhibited Human Monoamine Oxidase B In
Complex With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFN|A Chain A, Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl) -2-Imidazoline
pdb|2XFN|B Chain B, Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl) -2-Imidazoline
pdb|2XFP|A Chain A, Isatin-Inhibited Human Monoamine Oxidase B In Complex
With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFP|B Chain B, Isatin-Inhibited Human Monoamine Oxidase B In Complex
With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFQ|A Chain A, Rasagiline-Inhibited Human Monoamine Oxidase B In
Complex With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFQ|B Chain B, Rasagiline-Inhibited Human Monoamine Oxidase B In
Complex With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|3PO7|A Chain A, Human Monoamine Oxidase B In Complex With Zonisamide
pdb|3PO7|B Chain B, Human Monoamine Oxidase B In Complex With Zonisamide
pdb|4A79|A Chain A, Crystal Structure Of Human Monoamine Oxidase B (Mao B)
In Complex With Pioglitazone
pdb|4A79|B Chain B, Crystal Structure Of Human Monoamine Oxidase B (Mao B)
In Complex With Pioglitazone
pdb|4A7A|A Chain A, Crystal Structure Of Human Monoamine Oxidase B (Mao B)
In Complex With Rosiglitazone
pdb|4A7A|B Chain B, Crystal Structure Of Human Monoamine Oxidase B (Mao B)
In Complex With Rosiglitazone
Length = 520
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 30/62 (48%)
Query: 1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVG 60
M+ A L D G V + E R +GG+ + ++ ++++ N + RL K++G
Sbjct: 17 MAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQNRILRLAKELG 76
Query: 61 AD 62
+
Sbjct: 77 LE 78
>pdb|3ZYX|A Chain A, Crystal Structure Of Human Monoamine Oxidase B In
Complex With Methylene Blue And Bearing The Double
Mutation I199a- Y326a
pdb|3ZYX|B Chain B, Crystal Structure Of Human Monoamine Oxidase B In
Complex With Methylene Blue And Bearing The Double
Mutation I199a- Y326a
Length = 519
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 30/62 (48%)
Query: 1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVG 60
M+ A L D G V + E R +GG+ + ++ ++++ N + RL K++G
Sbjct: 16 MAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQNRILRLAKELG 75
Query: 61 AD 62
+
Sbjct: 76 LE 77
>pdb|2XFO|A Chain A, Tranylcypromine-Inhibited Human Monoamine Oxidase B
Ile199ala Mutant In Complex With 2-(2-Benzofuranyl)-2-
Imidazoline
pdb|2XFO|B Chain B, Tranylcypromine-Inhibited Human Monoamine Oxidase B
Ile199ala Mutant In Complex With 2-(2-Benzofuranyl)-2-
Imidazoline
Length = 520
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 30/62 (48%)
Query: 1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVG 60
M+ A L D G V + E R +GG+ + ++ ++++ N + RL K++G
Sbjct: 17 MAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQNRILRLAKELG 76
Query: 61 AD 62
+
Sbjct: 77 LE 78
>pdb|2XFU|A Chain A, Human Monoamine Oxidase B With Tranylcypromine
pdb|2XFU|B Chain B, Human Monoamine Oxidase B With Tranylcypromine
Length = 519
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 30/62 (48%)
Query: 1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVG 60
M+ A L D G V + E R +GG+ + ++ ++++ N + RL K++G
Sbjct: 16 MAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQNRILRLAKELG 75
Query: 61 AD 62
+
Sbjct: 76 LE 77
>pdb|2C72|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of
Tyr435 Mutant Proteins
pdb|2C72|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of
Tyr435 Mutant Proteins
Length = 520
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 30/62 (48%)
Query: 1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVG 60
M+ A L D G V + E R +GG+ + ++ ++++ N + RL K++G
Sbjct: 17 MAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQNRILRLAKELG 76
Query: 61 AD 62
+
Sbjct: 77 LE 78
>pdb|2C75|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of
Tyr435 Mutant Proteins
pdb|2C75|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of
Tyr435 Mutant Proteins
Length = 520
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 30/62 (48%)
Query: 1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVG 60
M+ A L D G V + E R +GG+ + ++ ++++ N + RL K++G
Sbjct: 17 MAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQNRILRLAKELG 76
Query: 61 AD 62
+
Sbjct: 77 LE 78
>pdb|2C76|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of
Tyr435 Mutant Proteins
pdb|2C76|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of
Tyr435 Mutant Proteins
Length = 520
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 30/62 (48%)
Query: 1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVG 60
M+ A L D G V + E R +GG+ + ++ ++++ N + RL K++G
Sbjct: 17 MAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQNRILRLAKELG 76
Query: 61 AD 62
+
Sbjct: 77 LE 78
>pdb|2C73|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of
Tyr435 Mutant Proteins
pdb|2C73|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of
Tyr435 Mutant Proteins
Length = 520
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 30/62 (48%)
Query: 1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVG 60
M+ A L D G V + E R +GG+ + ++ ++++ N + RL K++G
Sbjct: 17 MAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQNRILRLAKELG 76
Query: 61 AD 62
+
Sbjct: 77 LE 78
>pdb|3C4Q|A Chain A, Structure Of The Retaining Glycosyltransferase Msha :
The First Step In Mycothiol Biosynthesis. Organism :
Corynebacterium Glutamicum- Complex With Udp
pdb|3C4Q|B Chain B, Structure Of The Retaining Glycosyltransferase Msha :
The First Step In Mycothiol Biosynthesis. Organism :
Corynebacterium Glutamicum- Complex With Udp
pdb|3C4V|A Chain A, Structure Of The Retaining Glycosyltransferase Msha:the
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum : Complex With Udp And
1l-Ins-1- P.
pdb|3C4V|B Chain B, Structure Of The Retaining Glycosyltransferase Msha:the
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum : Complex With Udp And
1l-Ins-1- P
Length = 426
Score = 26.9 bits (58), Expect = 2.5, Method: Composition-based stats.
Identities = 12/17 (70%), Positives = 13/17 (76%)
Query: 1 MSTAVELLDQGHEVDIY 17
+STA EL QG EVDIY
Sbjct: 29 LSTATELAKQGIEVDIY 45
>pdb|3C48|A Chain A, Structure Of The Retaining Glycosyltransferase Msha: The
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum- Apo (Open) Structure.
pdb|3C48|B Chain B, Structure Of The Retaining Glycosyltransferase Msha: The
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum- Apo (Open) Structure
Length = 438
Score = 26.9 bits (58), Expect = 2.5, Method: Composition-based stats.
Identities = 12/17 (70%), Positives = 13/17 (76%)
Query: 1 MSTAVELLDQGHEVDIY 17
+STA EL QG EVDIY
Sbjct: 49 LSTATELAKQGIEVDIY 65
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.142 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,653,653
Number of Sequences: 62578
Number of extensions: 93528
Number of successful extensions: 239
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 227
Number of HSP's gapped (non-prelim): 21
length of query: 87
length of database: 14,973,337
effective HSP length: 55
effective length of query: 32
effective length of database: 11,531,547
effective search space: 369009504
effective search space used: 369009504
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)