Query 034688
Match_columns 87
No_of_seqs 122 out of 1135
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 05:27:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034688.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034688hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3349 Uncharacterized conser 99.8 1.7E-19 3.7E-24 132.8 5.9 86 1-86 13-101 (485)
2 TIGR02731 phytoene_desat phyto 99.7 3.6E-16 7.9E-21 113.5 8.4 86 1-86 12-99 (453)
3 PLN02612 phytoene desaturase 99.6 1.1E-15 2.5E-20 114.6 8.5 87 1-87 106-194 (567)
4 PRK11883 protoporphyrinogen ox 99.6 7.3E-16 1.6E-20 110.9 7.2 67 1-68 13-81 (451)
5 TIGR00562 proto_IX_ox protopor 99.6 9.6E-16 2.1E-20 111.1 7.8 66 1-67 15-84 (462)
6 COG1232 HemY Protoporphyrinoge 99.6 7.6E-16 1.6E-20 113.0 6.8 85 1-86 13-99 (444)
7 TIGR03467 HpnE squalene-associ 99.6 1.5E-15 3.3E-20 107.8 8.2 65 2-66 1-66 (419)
8 TIGR02732 zeta_caro_desat caro 99.6 1.8E-15 3.9E-20 111.4 8.7 82 1-82 12-93 (474)
9 PRK12416 protoporphyrinogen ox 99.6 1.1E-15 2.3E-20 111.3 7.3 80 1-81 14-99 (463)
10 PF01593 Amino_oxidase: Flavin 99.6 1.6E-15 3.4E-20 106.0 7.3 65 1-65 4-69 (450)
11 PF13450 NAD_binding_8: NAD(P) 99.6 9.2E-16 2E-20 86.7 4.3 58 1-59 9-68 (68)
12 PLN02487 zeta-carotene desatur 99.6 8.4E-15 1.8E-19 110.2 9.3 85 1-85 88-172 (569)
13 PRK07233 hypothetical protein; 99.6 4.7E-15 1E-19 106.0 6.4 76 1-77 12-87 (434)
14 PLN02576 protoporphyrinogen ox 99.5 2.8E-14 6.2E-19 104.5 7.7 82 1-84 25-108 (496)
15 PRK07208 hypothetical protein; 99.5 1.2E-13 2.6E-18 100.8 7.7 64 1-65 17-80 (479)
16 KOG0029 Amine oxidase [Seconda 99.5 7.7E-14 1.7E-18 103.8 6.7 75 1-76 28-103 (501)
17 PLN02268 probable polyamine ox 99.5 1.5E-13 3.3E-18 99.3 6.2 62 1-63 13-76 (435)
18 TIGR02734 crtI_fam phytoene de 99.4 1.9E-12 4.2E-17 95.2 9.1 60 1-62 11-70 (502)
19 TIGR02733 desat_CrtD C-3',4' d 99.4 4.4E-12 9.6E-17 93.2 8.5 78 1-79 14-94 (492)
20 COG2907 Predicted NAD/FAD-bind 99.3 1.4E-11 3.1E-16 88.6 7.2 63 1-64 21-87 (447)
21 KOG1276 Protoporphyrinogen oxi 99.2 1.5E-11 3.3E-16 89.9 6.2 83 1-83 24-116 (491)
22 COG1233 Phytoene dehydrogenase 99.2 7.4E-11 1.6E-15 87.4 8.5 60 1-63 16-76 (487)
23 TIGR02730 carot_isom carotene 99.2 8.4E-11 1.8E-15 86.7 7.7 78 1-79 13-95 (493)
24 PLN02568 polyamine oxidase 99.1 8.8E-11 1.9E-15 88.1 6.3 63 1-64 18-86 (539)
25 KOG0685 Flavin-containing amin 99.1 2.2E-10 4.9E-15 84.5 6.3 59 1-60 34-94 (498)
26 COG1231 Monoamine oxidase [Ami 99.1 3.1E-10 6.7E-15 83.3 6.4 67 1-68 20-86 (450)
27 PLN03000 amine oxidase 99.0 8.7E-10 1.9E-14 86.5 7.0 64 1-64 197-264 (881)
28 COG3380 Predicted NAD/FAD-depe 99.0 5E-10 1.1E-14 78.4 4.8 62 1-63 14-75 (331)
29 PLN02529 lysine-specific histo 99.0 1.2E-09 2.6E-14 84.6 7.3 64 1-64 173-240 (738)
30 PLN02676 polyamine oxidase 99.0 1.7E-09 3.8E-14 80.2 7.0 64 1-65 39-107 (487)
31 PLN02328 lysine-specific histo 98.9 4E-09 8.6E-14 82.4 5.7 64 1-64 251-318 (808)
32 COG0562 Glf UDP-galactopyranos 98.8 7.3E-09 1.6E-13 73.9 5.3 60 2-61 15-76 (374)
33 TIGR00031 UDP-GALP_mutase UDP- 98.8 1.7E-08 3.7E-13 73.2 6.4 60 1-60 14-73 (377)
34 PRK13977 myosin-cross-reactive 98.7 1.4E-08 3.1E-13 76.9 3.8 59 1-60 35-98 (576)
35 PTZ00363 rab-GDP dissociation 98.4 8E-07 1.7E-11 65.7 6.6 82 1-83 17-118 (443)
36 PLN02976 amine oxidase 98.4 7.3E-07 1.6E-11 73.4 6.2 64 1-64 706-778 (1713)
37 COG1635 THI4 Ribulose 1,5-bisp 97.8 2E-05 4.3E-10 54.2 2.7 54 1-63 43-96 (262)
38 PRK12779 putative bifunctional 97.3 0.00019 4.1E-09 57.5 3.3 29 1-29 319-347 (944)
39 PRK08243 4-hydroxybenzoate 3-m 97.3 0.0007 1.5E-08 48.6 5.8 49 1-65 15-65 (392)
40 PF01946 Thi4: Thi4 family; PD 97.2 0.00015 3.2E-09 49.7 1.5 54 1-63 30-83 (230)
41 PRK06184 hypothetical protein; 97.2 0.0011 2.3E-08 49.3 5.8 49 1-65 16-64 (502)
42 TIGR01988 Ubi-OHases Ubiquinon 97.2 0.00056 1.2E-08 48.3 4.1 54 1-65 12-65 (385)
43 COG0493 GltD NADPH-dependent g 97.2 0.00034 7.3E-09 52.1 3.0 29 1-29 136-164 (457)
44 PRK07364 2-octaprenyl-6-methox 97.2 0.00059 1.3E-08 49.0 4.2 51 1-65 31-81 (415)
45 PRK06753 hypothetical protein; 97.2 0.00098 2.1E-08 47.2 5.2 48 1-64 13-60 (373)
46 TIGR02360 pbenz_hydroxyl 4-hyd 97.2 0.0017 3.7E-08 46.8 6.4 51 1-65 15-65 (390)
47 PRK08163 salicylate hydroxylas 97.1 0.0019 4.1E-08 46.1 6.2 48 1-64 17-64 (396)
48 PRK07588 hypothetical protein; 97.0 0.0013 2.9E-08 47.0 4.7 48 1-64 13-60 (391)
49 PRK08132 FAD-dependent oxidore 97.0 0.0027 5.9E-08 47.7 6.6 48 1-64 36-83 (547)
50 PLN02172 flavin-containing mon 97.0 0.00072 1.6E-08 50.2 3.0 28 1-28 23-50 (461)
51 TIGR03315 Se_ygfK putative sel 96.9 0.00073 1.6E-08 54.6 3.0 30 1-30 550-579 (1012)
52 PLN02985 squalene monooxygenas 96.9 0.003 6.5E-08 47.6 6.0 49 1-65 56-104 (514)
53 TIGR03219 salicylate_mono sali 96.9 0.0011 2.4E-08 47.9 3.6 48 1-64 13-61 (414)
54 PRK07236 hypothetical protein; 96.9 0.0058 1.3E-07 43.8 6.9 49 1-64 19-67 (386)
55 PF13738 Pyr_redox_3: Pyridine 96.8 0.00091 2E-08 43.4 2.5 29 1-29 10-39 (203)
56 PRK09126 hypothetical protein; 96.8 0.0015 3.3E-08 46.5 3.8 54 1-65 16-69 (392)
57 PRK12831 putative oxidoreducta 96.8 0.0012 2.5E-08 49.1 3.1 28 1-28 153-180 (464)
58 PF01494 FAD_binding_3: FAD bi 96.8 0.0013 2.8E-08 45.3 3.0 48 1-64 14-61 (356)
59 PRK08244 hypothetical protein; 96.8 0.0019 4.2E-08 47.8 3.9 46 1-64 15-62 (493)
60 PRK08849 2-octaprenyl-3-methyl 96.7 0.0031 6.8E-08 45.2 4.8 55 1-65 16-70 (384)
61 COG1148 HdrA Heterodisulfide r 96.7 0.00098 2.1E-08 50.5 2.2 30 1-30 137-166 (622)
62 PRK05868 hypothetical protein; 96.7 0.0018 4E-08 46.4 3.6 48 1-64 14-61 (372)
63 TIGR00292 thiazole biosynthesi 96.7 0.0012 2.7E-08 45.5 2.6 27 1-27 34-60 (254)
64 TIGR01984 UbiH 2-polyprenyl-6- 96.7 0.0026 5.6E-08 45.2 4.3 53 1-65 12-65 (382)
65 PRK06183 mhpA 3-(3-hydroxyphen 96.7 0.0072 1.6E-07 45.4 6.7 49 1-65 23-71 (538)
66 PRK08850 2-octaprenyl-6-methox 96.7 0.005 1.1E-07 44.4 5.5 51 1-65 17-70 (405)
67 PRK08773 2-octaprenyl-3-methyl 96.7 0.0039 8.4E-08 44.6 4.9 54 1-65 19-72 (392)
68 PRK06617 2-octaprenyl-6-methox 96.6 0.0068 1.5E-07 43.3 6.0 52 1-64 14-65 (374)
69 PRK06847 hypothetical protein; 96.6 0.0046 9.9E-08 43.8 5.0 47 1-63 17-63 (375)
70 PRK12775 putative trifunctiona 96.6 0.0015 3.3E-08 52.7 2.8 29 1-29 443-471 (1006)
71 PRK07538 hypothetical protein; 96.6 0.002 4.4E-08 46.6 3.2 48 1-64 13-60 (413)
72 PRK12769 putative oxidoreducta 96.6 0.0018 3.9E-08 49.8 3.1 29 1-29 340-368 (654)
73 PRK07045 putative monooxygenas 96.6 0.0044 9.6E-08 44.3 4.9 49 1-65 18-66 (388)
74 COG0644 FixC Dehydrogenases (f 96.6 0.0015 3.2E-08 47.3 2.4 29 1-29 16-44 (396)
75 PRK05249 soluble pyridine nucl 96.6 0.0014 3.1E-08 48.0 2.3 29 1-29 18-46 (461)
76 PRK04176 ribulose-1,5-biphosph 96.6 0.0017 3.6E-08 44.9 2.5 27 1-27 38-64 (257)
77 PRK09853 putative selenate red 96.6 0.0016 3.5E-08 52.7 2.8 29 1-29 552-580 (1019)
78 PLN02852 ferredoxin-NADP+ redu 96.6 0.002 4.4E-08 48.5 3.1 30 1-30 39-70 (491)
79 PRK05714 2-octaprenyl-3-methyl 96.6 0.0036 7.8E-08 45.0 4.3 57 1-65 15-71 (405)
80 PRK06126 hypothetical protein; 96.6 0.0031 6.8E-08 47.2 4.1 49 1-65 20-68 (545)
81 PRK08013 oxidoreductase; Provi 96.6 0.0039 8.5E-08 44.9 4.4 55 1-65 16-70 (400)
82 PRK12409 D-amino acid dehydrog 96.5 0.002 4.2E-08 46.4 2.6 24 1-24 14-37 (410)
83 PRK06475 salicylate hydroxylas 96.5 0.0029 6.3E-08 45.6 3.5 49 1-65 15-63 (400)
84 PRK12809 putative oxidoreducta 96.5 0.0023 5E-08 49.2 3.1 29 1-29 323-351 (639)
85 KOG1399 Flavin-containing mono 96.5 0.0019 4.1E-08 48.1 2.5 29 1-29 19-47 (448)
86 PF01266 DAO: FAD dependent ox 96.5 0.002 4.3E-08 44.4 2.4 24 1-25 12-35 (358)
87 TIGR01316 gltA glutamate synth 96.5 0.0026 5.7E-08 46.9 3.1 28 1-28 146-173 (449)
88 COG0654 UbiH 2-polyprenyl-6-me 96.5 0.012 2.6E-07 42.3 6.5 45 1-61 15-60 (387)
89 PRK07333 2-octaprenyl-6-methox 96.5 0.0048 1E-07 44.1 4.3 50 1-64 14-65 (403)
90 PRK12778 putative bifunctional 96.4 0.0029 6.4E-08 49.4 3.1 28 1-28 444-471 (752)
91 TIGR00275 flavoprotein, HI0933 96.4 0.0027 5.8E-08 46.2 2.4 27 1-27 10-36 (400)
92 PRK07608 ubiquinone biosynthes 96.3 0.0038 8.2E-08 44.4 3.1 54 1-65 18-71 (388)
93 PF00996 GDI: GDP dissociation 96.3 0.017 3.7E-07 43.0 6.6 80 4-84 20-119 (438)
94 PLN02661 Putative thiazole syn 96.3 0.0077 1.7E-07 43.8 4.6 27 1-27 105-132 (357)
95 PRK06115 dihydrolipoamide dehy 96.3 0.003 6.6E-08 46.7 2.5 28 1-28 16-43 (466)
96 TIGR01350 lipoamide_DH dihydro 96.3 0.0038 8.3E-08 45.7 2.9 28 1-29 14-41 (461)
97 TIGR01989 COQ6 Ubiquinone bios 96.2 0.012 2.5E-07 43.1 5.3 62 1-66 13-78 (437)
98 PRK12814 putative NADPH-depend 96.2 0.0043 9.4E-08 47.9 3.1 29 1-29 206-234 (652)
99 PRK12810 gltD glutamate syntha 96.2 0.0049 1.1E-07 45.7 3.1 28 1-28 156-183 (471)
100 TIGR01318 gltD_gamma_fam gluta 96.2 0.0048 1E-07 45.8 3.0 29 1-29 154-182 (467)
101 TIGR01377 soxA_mon sarcosine o 96.1 0.0034 7.5E-08 44.4 2.1 24 1-24 13-36 (380)
102 KOG0399 Glutamate synthase [Am 96.1 0.0054 1.2E-07 50.8 3.3 29 1-29 1798-1826(2142)
103 PRK06834 hypothetical protein; 96.1 0.0084 1.8E-07 44.8 4.1 47 1-65 16-65 (488)
104 TIGR01424 gluta_reduc_2 glutat 96.1 0.005 1.1E-07 45.2 2.8 28 1-29 15-42 (446)
105 PF00743 FMO-like: Flavin-bind 96.1 0.0046 9.9E-08 46.9 2.5 27 1-27 14-40 (531)
106 PRK10157 putative oxidoreducta 96.1 0.0052 1.1E-07 45.0 2.6 26 1-26 18-43 (428)
107 PRK07251 pyridine nucleotide-d 96.1 0.0055 1.2E-07 44.7 2.8 28 1-28 16-44 (438)
108 PF06100 Strep_67kDa_ant: Stre 96.1 0.0072 1.6E-07 45.6 3.4 59 1-60 15-78 (500)
109 COG0665 DadA Glycine/D-amino a 96.0 0.0052 1.1E-07 43.5 2.5 25 1-25 17-41 (387)
110 PRK06185 hypothetical protein; 96.0 0.02 4.3E-07 41.1 5.5 49 1-65 19-67 (407)
111 TIGR01292 TRX_reduct thioredox 96.0 0.0074 1.6E-07 41.1 3.0 28 1-29 13-40 (300)
112 TIGR01813 flavo_cyto_c flavocy 96.0 0.0056 1.2E-07 44.6 2.5 27 1-27 12-39 (439)
113 PRK11728 hydroxyglutarate oxid 95.9 0.0053 1.1E-07 44.1 2.2 27 1-27 15-43 (393)
114 PRK06467 dihydrolipoamide dehy 95.9 0.0066 1.4E-07 45.0 2.6 28 1-28 17-44 (471)
115 PRK06416 dihydrolipoamide dehy 95.9 0.0065 1.4E-07 44.6 2.5 28 1-29 17-44 (462)
116 TIGR01317 GOGAT_sm_gam glutama 95.9 0.0078 1.7E-07 44.9 3.0 29 1-29 156-184 (485)
117 PRK11749 dihydropyrimidine deh 95.9 0.0077 1.7E-07 44.3 2.9 28 1-28 153-180 (457)
118 PRK08010 pyridine nucleotide-d 95.9 0.0088 1.9E-07 43.7 3.1 29 1-29 16-45 (441)
119 PRK05732 2-octaprenyl-6-methox 95.8 0.014 3E-07 41.5 4.0 21 1-21 16-39 (395)
120 PF00890 FAD_binding_2: FAD bi 95.8 0.0058 1.3E-07 44.0 2.0 25 1-25 12-36 (417)
121 PTZ00188 adrenodoxin reductase 95.8 0.0094 2E-07 45.1 3.1 31 1-31 52-83 (506)
122 PRK08020 ubiF 2-octaprenyl-3-m 95.8 0.019 4.2E-07 40.9 4.5 55 1-65 18-72 (391)
123 PRK12837 3-ketosteroid-delta-1 95.7 0.0097 2.1E-07 44.6 2.9 27 1-27 19-45 (513)
124 PRK06116 glutathione reductase 95.7 0.0064 1.4E-07 44.6 1.9 27 1-28 17-43 (450)
125 PRK10015 oxidoreductase; Provi 95.7 0.0085 1.9E-07 44.0 2.5 24 1-24 18-41 (429)
126 TIGR03364 HpnW_proposed FAD de 95.7 0.0096 2.1E-07 42.1 2.6 22 1-22 13-34 (365)
127 PRK11259 solA N-methyltryptoph 95.7 0.0082 1.8E-07 42.4 2.2 24 1-24 16-39 (376)
128 PRK00711 D-amino acid dehydrog 95.6 0.0091 2E-07 42.9 2.5 25 1-25 13-37 (416)
129 PF12831 FAD_oxidored: FAD dep 95.6 0.0092 2E-07 43.8 2.5 28 1-28 12-39 (428)
130 TIGR02032 GG-red-SF geranylger 95.6 0.01 2.2E-07 40.1 2.6 25 1-25 13-37 (295)
131 PRK05976 dihydrolipoamide dehy 95.6 0.0099 2.1E-07 43.9 2.6 28 1-29 17-44 (472)
132 PRK12771 putative glutamate sy 95.6 0.012 2.6E-07 44.5 3.1 28 1-28 150-177 (564)
133 PRK14727 putative mercuric red 95.6 0.0099 2.1E-07 44.1 2.6 29 1-29 29-57 (479)
134 TIGR01421 gluta_reduc_1 glutat 95.6 0.0092 2E-07 44.0 2.3 27 1-28 15-41 (450)
135 PRK07121 hypothetical protein; 95.6 0.011 2.3E-07 44.0 2.6 27 1-27 33-59 (492)
136 COG2072 TrkA Predicted flavopr 95.5 0.011 2.3E-07 43.8 2.5 26 1-26 21-47 (443)
137 PRK07190 hypothetical protein; 95.5 0.024 5.2E-07 42.4 4.4 23 1-23 18-40 (487)
138 KOG2415 Electron transfer flav 95.5 0.026 5.7E-07 42.5 4.4 53 1-64 89-147 (621)
139 KOG2614 Kynurenine 3-monooxyge 95.5 0.034 7.3E-07 41.3 4.9 47 1-63 15-61 (420)
140 PRK13984 putative oxidoreducta 95.4 0.015 3.2E-07 44.3 3.1 28 1-28 296-323 (604)
141 TIGR01790 carotene-cycl lycope 95.3 0.013 2.9E-07 41.7 2.4 26 1-26 12-37 (388)
142 PRK12842 putative succinate de 95.3 0.015 3.3E-07 44.2 2.6 28 1-28 22-49 (574)
143 PRK07818 dihydrolipoamide dehy 95.2 0.016 3.5E-07 42.7 2.7 28 1-29 17-44 (466)
144 PRK06481 fumarate reductase fl 95.2 0.016 3.4E-07 43.5 2.6 27 1-27 74-100 (506)
145 PF03486 HI0933_like: HI0933-l 95.2 0.013 2.9E-07 43.1 2.1 24 1-24 13-36 (409)
146 TIGR02053 MerA mercuric reduct 95.2 0.016 3.5E-07 42.6 2.6 27 1-28 13-39 (463)
147 PRK06370 mercuric reductase; V 95.2 0.017 3.6E-07 42.6 2.6 27 1-28 18-44 (463)
148 PRK06292 dihydrolipoamide dehy 95.2 0.016 3.5E-07 42.4 2.5 27 1-28 16-42 (460)
149 TIGR03143 AhpF_homolog putativ 95.2 0.021 4.6E-07 43.2 3.2 28 1-29 17-44 (555)
150 PTZ00367 squalene epoxidase; P 95.2 0.042 9.1E-07 42.1 4.8 50 1-65 46-95 (567)
151 PRK01747 mnmC bifunctional tRN 95.2 0.014 3E-07 45.0 2.2 25 1-25 273-297 (662)
152 PRK12844 3-ketosteroid-delta-1 95.1 0.019 4.1E-07 43.6 2.8 27 1-27 19-45 (557)
153 PRK12834 putative FAD-binding 95.1 0.021 4.6E-07 43.1 2.9 28 1-28 17-46 (549)
154 TIGR01372 soxA sarcosine oxida 95.0 0.021 4.6E-07 46.1 3.0 29 1-29 176-204 (985)
155 PRK06567 putative bifunctional 95.0 0.016 3.5E-07 47.1 2.3 26 1-26 396-421 (1028)
156 PRK12770 putative glutamate sy 95.0 0.028 6.1E-07 40.0 3.3 29 1-29 31-59 (352)
157 TIGR03197 MnmC_Cterm tRNA U-34 95.0 0.016 3.5E-07 41.4 2.0 23 3-25 1-23 (381)
158 PRK08294 phenol 2-monooxygenas 95.0 0.037 8E-07 42.8 4.0 47 1-65 45-94 (634)
159 TIGR02028 ChlP geranylgeranyl 94.9 0.021 4.6E-07 41.4 2.5 24 1-24 13-36 (398)
160 PRK08274 tricarballylate dehyd 94.9 0.023 5E-07 41.8 2.6 27 1-27 17-45 (466)
161 PRK12845 3-ketosteroid-delta-1 94.9 0.022 4.7E-07 43.5 2.5 28 1-28 28-55 (564)
162 PRK13748 putative mercuric red 94.9 0.02 4.4E-07 43.0 2.3 27 1-28 111-137 (561)
163 PRK07843 3-ketosteroid-delta-1 94.8 0.023 5.1E-07 43.1 2.6 27 1-27 20-46 (557)
164 PRK12839 hypothetical protein; 94.8 0.024 5.2E-07 43.3 2.6 28 1-28 21-48 (572)
165 TIGR03329 Phn_aa_oxid putative 94.7 0.023 4.9E-07 41.9 2.3 22 1-22 37-60 (460)
166 PRK14694 putative mercuric red 94.7 0.027 5.8E-07 41.6 2.6 27 1-28 19-45 (468)
167 PRK06134 putative FAD-binding 94.6 0.03 6.6E-07 42.7 2.6 28 1-28 25-52 (581)
168 KOG4254 Phytoene desaturase [C 94.5 0.037 8E-07 41.9 3.0 39 1-39 27-65 (561)
169 PRK07494 2-octaprenyl-6-methox 94.5 0.028 6.2E-07 40.0 2.3 23 1-23 20-42 (388)
170 PRK12843 putative FAD-binding 94.3 0.035 7.6E-07 42.3 2.5 28 1-28 29-56 (578)
171 TIGR02023 BchP-ChlP geranylger 94.3 0.036 7.7E-07 39.8 2.4 20 1-20 13-32 (388)
172 PRK12835 3-ketosteroid-delta-1 94.2 0.041 8.9E-07 42.1 2.6 26 1-26 24-49 (584)
173 TIGR02485 CobZ_N-term precorri 94.1 0.043 9.2E-07 40.1 2.6 27 1-27 9-37 (432)
174 PRK12266 glpD glycerol-3-phosp 94.0 0.045 9.8E-07 41.1 2.6 25 1-25 19-43 (508)
175 PRK11101 glpA sn-glycerol-3-ph 93.9 0.048 1E-06 41.3 2.6 25 1-25 19-43 (546)
176 PRK13369 glycerol-3-phosphate 93.9 0.052 1.1E-06 40.6 2.6 25 1-25 19-43 (502)
177 PTZ00052 thioredoxin reductase 93.9 0.053 1.2E-06 40.6 2.7 29 1-29 18-54 (499)
178 PRK10262 thioredoxin reductase 93.8 0.055 1.2E-06 37.8 2.5 28 1-29 19-46 (321)
179 PTZ00058 glutathione reductase 93.7 0.053 1.1E-06 41.5 2.4 28 1-29 61-88 (561)
180 PRK06327 dihydrolipoamide dehy 93.7 0.057 1.2E-06 40.0 2.5 29 1-29 17-51 (475)
181 TIGR01320 mal_quin_oxido malat 93.5 0.056 1.2E-06 40.5 2.2 24 1-24 13-38 (483)
182 TIGR00137 gid_trmFO tRNA:m(5)U 93.5 0.061 1.3E-06 40.1 2.4 25 1-25 13-37 (433)
183 COG0446 HcaD Uncharacterized N 93.4 0.055 1.2E-06 38.2 2.0 28 1-28 149-176 (415)
184 PRK07845 flavoprotein disulfid 93.4 0.069 1.5E-06 39.5 2.5 28 1-29 14-41 (466)
185 PRK06912 acoL dihydrolipoamide 93.3 0.064 1.4E-06 39.5 2.3 27 1-28 13-39 (458)
186 PLN02507 glutathione reductase 93.3 0.082 1.8E-06 39.7 2.9 29 1-29 38-75 (499)
187 TIGR01373 soxB sarcosine oxida 93.2 0.07 1.5E-06 38.4 2.4 22 1-22 43-66 (407)
188 PLN00093 geranylgeranyl diphos 93.2 0.07 1.5E-06 39.6 2.3 22 1-22 52-73 (450)
189 PLN02927 antheraxanthin epoxid 93.1 0.067 1.5E-06 41.9 2.2 21 1-21 94-114 (668)
190 COG5044 MRS6 RAB proteins gera 93.1 0.21 4.6E-06 37.0 4.6 80 4-84 22-120 (434)
191 TIGR01789 lycopene_cycl lycope 93.1 0.083 1.8E-06 38.2 2.5 26 1-26 12-39 (370)
192 TIGR01812 sdhA_frdA_Gneg succi 92.9 0.088 1.9E-06 39.9 2.6 27 1-27 12-38 (566)
193 PRK05335 tRNA (uracil-5-)-meth 92.9 0.092 2E-06 39.2 2.5 24 1-24 15-38 (436)
194 PLN02464 glycerol-3-phosphate 92.5 0.1 2.3E-06 40.3 2.5 25 1-25 84-108 (627)
195 TIGR02462 pyranose_ox pyranose 92.3 0.13 2.8E-06 39.4 2.7 25 1-25 13-37 (544)
196 PRK15317 alkyl hydroperoxide r 92.2 0.15 3.2E-06 38.3 2.9 27 1-29 224-250 (517)
197 TIGR03140 AhpF alkyl hydropero 92.1 0.12 2.6E-06 38.8 2.4 26 1-28 225-250 (515)
198 PRK07804 L-aspartate oxidase; 91.9 0.14 3.1E-06 38.8 2.6 25 1-25 29-53 (541)
199 COG1249 Lpd Pyruvate/2-oxoglut 91.9 0.21 4.5E-06 37.5 3.4 29 2-30 18-46 (454)
200 KOG1439 RAB proteins geranylge 91.7 0.28 6E-06 36.6 3.8 78 6-84 22-119 (440)
201 PRK08641 sdhA succinate dehydr 91.7 0.15 3.2E-06 39.1 2.5 26 1-26 16-41 (589)
202 PTZ00306 NADH-dependent fumara 91.7 0.14 3.1E-06 42.2 2.5 27 1-27 422-448 (1167)
203 COG2081 Predicted flavoprotein 91.6 0.18 3.9E-06 37.4 2.8 28 1-28 16-43 (408)
204 KOG2820 FAD-dependent oxidored 91.6 0.18 3.9E-06 37.0 2.7 27 1-27 20-46 (399)
205 PLN02546 glutathione reductase 91.5 0.16 3.5E-06 38.8 2.5 29 1-29 92-129 (558)
206 TIGR01423 trypano_reduc trypan 91.5 0.17 3.7E-06 37.9 2.6 28 2-29 17-53 (486)
207 PRK07803 sdhA succinate dehydr 91.4 0.25 5.5E-06 38.1 3.5 25 1-25 21-45 (626)
208 PRK05257 malate:quinone oxidor 91.3 0.13 2.8E-06 38.7 1.8 27 1-27 18-46 (494)
209 KOG1298 Squalene monooxygenase 91.1 0.23 5E-06 37.2 2.9 70 2-87 59-131 (509)
210 PRK05675 sdhA succinate dehydr 91.1 0.24 5.1E-06 37.9 3.0 26 1-26 1-26 (570)
211 PRK11445 putative oxidoreducta 91.0 0.18 3.8E-06 35.9 2.2 22 1-23 14-35 (351)
212 TIGR01811 sdhA_Bsu succinate d 90.9 0.21 4.6E-06 38.4 2.7 24 1-24 11-34 (603)
213 PRK06452 sdhA succinate dehydr 90.9 0.21 4.5E-06 38.1 2.6 27 1-27 18-44 (566)
214 COG3573 Predicted oxidoreducta 90.6 0.26 5.6E-06 36.5 2.8 27 1-27 18-46 (552)
215 PF00070 Pyr_redox: Pyridine n 90.5 0.4 8.6E-06 26.9 3.0 23 2-24 13-35 (80)
216 PTZ00153 lipoamide dehydrogena 90.4 0.24 5.2E-06 38.7 2.6 28 2-29 130-158 (659)
217 PRK06996 hypothetical protein; 90.3 1.4 3E-05 31.8 6.3 50 1-64 24-77 (398)
218 PLN02463 lycopene beta cyclase 90.2 0.21 4.6E-06 37.2 2.1 22 1-22 41-62 (447)
219 COG1206 Gid NAD(FAD)-utilizing 90.0 0.29 6.2E-06 36.0 2.5 22 3-24 18-39 (439)
220 PRK08958 sdhA succinate dehydr 90.0 0.27 5.9E-06 37.7 2.5 26 1-26 20-45 (588)
221 COG0492 TrxB Thioredoxin reduc 89.8 0.31 6.6E-06 34.7 2.5 31 1-31 16-46 (305)
222 PRK07573 sdhA succinate dehydr 89.7 0.3 6.5E-06 37.9 2.6 24 1-24 48-71 (640)
223 PRK07057 sdhA succinate dehydr 89.6 0.3 6.4E-06 37.5 2.5 27 1-27 25-51 (591)
224 PTZ00139 Succinate dehydrogena 89.4 0.31 6.8E-06 37.6 2.5 27 1-27 42-68 (617)
225 PLN00128 Succinate dehydrogena 89.3 0.34 7.3E-06 37.7 2.6 26 1-26 63-88 (635)
226 PRK09078 sdhA succinate dehydr 88.8 0.38 8.2E-06 37.0 2.6 26 1-26 25-50 (598)
227 PRK08255 salicylyl-CoA 5-hydro 88.8 0.34 7.4E-06 38.3 2.3 23 1-23 13-37 (765)
228 PRK06069 sdhA succinate dehydr 88.6 0.38 8.3E-06 36.7 2.5 27 1-27 18-47 (577)
229 PLN02815 L-aspartate oxidase 88.6 0.38 8.2E-06 37.1 2.4 25 1-26 42-66 (594)
230 PF00732 GMC_oxred_N: GMC oxid 88.2 0.43 9.3E-06 32.7 2.3 24 2-25 14-38 (296)
231 COG0579 Predicted dehydrogenas 88.1 0.41 9E-06 35.7 2.3 29 1-29 16-46 (429)
232 PTZ00383 malate:quinone oxidor 88.0 0.37 8.1E-06 36.4 2.1 24 1-24 58-83 (497)
233 TIGR01438 TGR thioredoxin and 88.0 0.44 9.5E-06 35.7 2.4 28 1-28 15-50 (484)
234 PRK08626 fumarate reductase fl 87.4 0.52 1.1E-05 36.8 2.6 26 1-26 18-43 (657)
235 PRK08401 L-aspartate oxidase; 87.3 0.54 1.2E-05 34.9 2.6 22 1-22 14-35 (466)
236 PRK06175 L-aspartate oxidase; 87.3 0.47 1E-05 35.0 2.2 25 1-26 17-41 (433)
237 TIGR00551 nadB L-aspartate oxi 87.3 0.55 1.2E-05 35.0 2.6 25 1-26 15-39 (488)
238 PF05834 Lycopene_cycl: Lycope 87.1 0.45 9.8E-06 34.2 2.0 23 1-23 12-36 (374)
239 KOG2852 Possible oxidoreductas 86.7 0.4 8.7E-06 34.7 1.5 25 2-26 24-54 (380)
240 TIGR02352 thiamin_ThiO glycine 86.6 0.52 1.1E-05 32.5 2.0 19 5-24 1-19 (337)
241 PRK05945 sdhA succinate dehydr 86.5 0.56 1.2E-05 35.8 2.3 26 1-26 16-43 (575)
242 TIGR03377 glycerol3P_GlpA glyc 86.2 0.61 1.3E-05 35.0 2.3 21 4-25 1-21 (516)
243 PRK07395 L-aspartate oxidase; 85.5 0.64 1.4E-05 35.5 2.2 25 1-26 22-46 (553)
244 PRK06263 sdhA succinate dehydr 84.9 0.75 1.6E-05 34.8 2.3 26 1-27 20-46 (543)
245 PRK13339 malate:quinone oxidor 84.8 0.84 1.8E-05 34.6 2.5 28 1-28 19-48 (497)
246 PF07992 Pyr_redox_2: Pyridine 84.4 0.78 1.7E-05 29.3 1.9 25 1-25 12-36 (201)
247 PRK06854 adenylylsulfate reduc 84.2 0.9 1.9E-05 35.1 2.5 25 1-25 24-50 (608)
248 PRK08071 L-aspartate oxidase; 83.9 0.85 1.8E-05 34.4 2.2 26 1-27 16-41 (510)
249 PRK09231 fumarate reductase fl 83.8 0.9 1.9E-05 34.8 2.3 27 1-27 17-45 (582)
250 PF03853 YjeF_N: YjeF-related 83.8 0.82 1.8E-05 29.6 1.8 16 1-16 42-57 (169)
251 TIGR01176 fum_red_Fp fumarate 83.7 0.94 2E-05 34.8 2.4 27 1-27 16-44 (580)
252 PRK05192 tRNA uridine 5-carbox 82.8 1.1 2.4E-05 35.0 2.5 25 1-25 17-42 (618)
253 PRK02106 choline dehydrogenase 82.8 0.96 2.1E-05 34.3 2.1 21 2-22 19-40 (560)
254 PRK08275 putative oxidoreducta 82.5 1.1 2.4E-05 34.0 2.4 25 1-25 22-48 (554)
255 KOG1800 Ferredoxin/adrenodoxin 82.1 1.6 3.5E-05 32.7 3.0 29 2-30 34-64 (468)
256 cd08352 Glo_EDI_BRP_like_1 Thi 82.1 3.4 7.3E-05 23.8 3.9 37 4-40 87-123 (125)
257 PRK09077 L-aspartate oxidase; 81.8 1.3 2.8E-05 33.6 2.4 25 1-26 21-45 (536)
258 PLN02697 lycopene epsilon cycl 81.4 1.3 2.8E-05 33.9 2.4 24 1-24 121-144 (529)
259 cd07265 2_3_CTD_N N-terminal d 80.4 6.7 0.00015 22.9 4.9 37 4-40 79-116 (122)
260 KOG2960 Protein involved in th 79.9 0.65 1.4E-05 32.4 0.3 27 1-27 89-117 (328)
261 PRK02705 murD UDP-N-acetylmura 79.6 1.5 3.2E-05 32.2 2.1 23 1-23 13-35 (459)
262 PRK08205 sdhA succinate dehydr 79.4 1.7 3.6E-05 33.3 2.4 24 1-25 18-41 (583)
263 TIGR01810 betA choline dehydro 79.3 1.3 2.9E-05 33.3 1.8 21 2-22 13-34 (532)
264 PRK05329 anaerobic glycerol-3- 78.6 1.8 3.9E-05 32.2 2.3 21 1-21 15-35 (422)
265 COG2303 BetA Choline dehydroge 78.4 1.8 3.9E-05 33.1 2.3 20 2-21 21-40 (542)
266 PRK13235 nifH nitrogenase redu 78.3 2.2 4.8E-05 29.2 2.6 20 3-22 21-40 (274)
267 PRK11478 putative lyase; Provi 78.0 7.8 0.00017 22.8 4.7 38 3-40 89-126 (129)
268 cd07233 Glyoxalase_I Glyoxalas 77.1 9.4 0.0002 21.9 4.8 37 3-40 84-120 (121)
269 PRK09897 hypothetical protein; 77.1 2.7 5.8E-05 32.2 2.9 29 1-29 14-45 (534)
270 PLN03050 pyridoxine (pyridoxam 76.6 1.9 4.2E-05 29.8 1.9 18 1-18 77-94 (246)
271 COG1053 SdhA Succinate dehydro 76.6 2.2 4.7E-05 32.9 2.3 27 1-27 19-45 (562)
272 PRK13230 nitrogenase reductase 76.5 2.8 6E-05 28.9 2.6 20 3-22 21-40 (279)
273 cd02032 Bchl_like This family 76.5 2.7 5.9E-05 28.6 2.6 20 3-22 20-39 (267)
274 cd02117 NifH_like This family 76.0 2.9 6.4E-05 27.5 2.6 21 3-23 20-40 (212)
275 COG0578 GlpA Glycerol-3-phosph 75.8 2.6 5.6E-05 32.5 2.5 26 2-27 26-51 (532)
276 TIGR01287 nifH nitrogenase iro 75.3 3.4 7.3E-05 28.3 2.8 22 3-24 20-41 (275)
277 PHA02518 ParA-like protein; Pr 75.1 3.3 7.1E-05 26.8 2.6 20 3-22 21-40 (211)
278 PRK10037 cell division protein 75.0 2.7 6E-05 28.4 2.3 20 3-22 22-41 (250)
279 PRK13185 chlL protochlorophyll 74.6 3.2 6.9E-05 28.3 2.5 20 3-22 22-41 (270)
280 cd08349 BLMA_like Bleomycin bi 74.6 10 0.00022 21.4 4.4 39 3-41 72-111 (112)
281 TIGR01281 DPOR_bchL light-inde 74.5 3.2 7E-05 28.2 2.5 20 3-22 20-39 (268)
282 PRK09564 coenzyme A disulfide 74.0 2.6 5.7E-05 30.7 2.1 24 1-24 13-38 (444)
283 TIGR02061 aprA adenosine phosp 73.9 3 6.5E-05 32.5 2.5 23 1-23 12-38 (614)
284 cd02037 MRP-like MRP (Multiple 73.8 3.7 8.1E-05 26.0 2.6 21 3-23 20-40 (169)
285 PF13454 NAD_binding_9: FAD-NA 73.3 2.8 6E-05 26.5 1.9 59 2-61 11-79 (156)
286 PF03033 Glyco_transf_28: Glyc 73.2 2.6 5.7E-05 25.4 1.7 17 1-17 16-32 (139)
287 CHL00072 chlL photochlorophyll 73.1 3.7 8E-05 28.8 2.6 20 3-22 20-39 (290)
288 PRK13236 nitrogenase reductase 72.9 4.1 8.9E-05 28.5 2.8 21 3-23 26-46 (296)
289 PRK13232 nifH nitrogenase redu 72.7 3.3 7.2E-05 28.4 2.3 20 3-22 21-40 (273)
290 cd07240 ED_TypeI_classII_N N-t 72.4 14 0.00031 21.0 4.7 38 4-41 75-112 (117)
291 cd08345 Fosfomycin_RP Fosfomyc 72.2 8.3 0.00018 22.0 3.7 38 4-41 72-109 (113)
292 cd02036 MinD Bacterial cell di 72.0 5 0.00011 25.1 2.8 23 3-25 20-42 (179)
293 cd02040 NifH NifH gene encodes 71.9 4.2 9.2E-05 27.4 2.6 20 3-22 21-40 (270)
294 PRK09754 phenylpropionate diox 71.2 3.4 7.4E-05 29.8 2.1 25 2-26 158-182 (396)
295 PRK01438 murD UDP-N-acetylmura 71.1 3.5 7.7E-05 30.5 2.2 22 1-22 29-50 (480)
296 TIGR03452 mycothione_red mycot 71.0 5.2 0.00011 29.6 3.1 22 7-29 19-40 (452)
297 PF01210 NAD_Gly3P_dh_N: NAD-d 69.8 3.7 7.9E-05 26.0 1.8 20 2-21 13-32 (157)
298 cd07245 Glo_EDI_BRP_like_9 Thi 69.4 11 0.00024 20.9 3.8 37 3-40 78-114 (114)
299 KOG0405 Pyridine nucleotide-di 69.3 5.7 0.00012 29.7 2.9 29 1-29 33-61 (478)
300 PRK14106 murD UDP-N-acetylmura 69.0 4.1 8.8E-05 29.8 2.2 21 1-21 18-38 (450)
301 PF01656 CbiA: CobQ/CobB/MinD/ 68.9 6.4 0.00014 24.9 2.9 23 3-25 19-41 (195)
302 cd08346 PcpA_N_like N-terminal 68.6 15 0.00033 21.1 4.3 36 3-40 90-125 (126)
303 PRK13512 coenzyme A disulfide 68.5 4.5 9.7E-05 29.7 2.3 24 1-24 14-39 (438)
304 PRK13800 putative oxidoreducta 68.4 4.1 8.9E-05 32.9 2.2 22 1-22 26-47 (897)
305 cd08351 ChaP_like ChaP, an enz 68.1 16 0.00034 21.5 4.3 38 3-40 74-118 (123)
306 TIGR01969 minD_arch cell divis 68.0 6.9 0.00015 26.0 3.0 23 3-25 21-43 (251)
307 TIGR00136 gidA glucose-inhibit 68.0 4.6 0.0001 31.7 2.3 26 1-26 13-38 (617)
308 cd07266 HPCD_N_class_II N-term 67.7 14 0.0003 21.4 4.0 38 4-41 78-116 (121)
309 cd07235 MRD Mitomycin C resist 67.6 12 0.00025 21.8 3.6 37 5-41 85-121 (122)
310 cd09012 Glo_EDI_BRP_like_24 Th 67.1 14 0.00029 21.7 3.9 35 5-40 87-121 (124)
311 PF01134 GIDA: Glucose inhibit 66.9 4.7 0.0001 29.9 2.1 25 2-26 13-38 (392)
312 COG0062 Uncharacterized conser 66.8 4.5 9.8E-05 27.4 1.9 18 1-18 66-83 (203)
313 PRK13234 nifH nitrogenase redu 66.7 5.8 0.00013 27.8 2.5 20 3-22 24-43 (295)
314 PF03848 TehB: Tellurite resis 66.1 4.5 9.9E-05 27.0 1.8 19 4-22 45-63 (192)
315 TIGR03371 cellulose_yhjQ cellu 65.9 6.7 0.00014 26.0 2.6 20 3-22 22-41 (246)
316 TIGR03385 CoA_CoA_reduc CoA-di 65.8 5.4 0.00012 29.0 2.2 23 2-24 1-25 (427)
317 PF03446 NAD_binding_2: NAD bi 65.7 6.8 0.00015 24.9 2.5 19 3-21 16-34 (163)
318 PRK07846 mycothione reductase; 65.2 6 0.00013 29.3 2.4 21 8-29 19-39 (451)
319 cd09013 BphC-JF8_N_like N-term 64.8 18 0.00039 21.1 4.1 38 4-42 80-117 (121)
320 cd07261 Glo_EDI_BRP_like_11 Th 64.4 21 0.00046 20.4 4.3 35 6-41 79-113 (114)
321 cd08356 Glo_EDI_BRP_like_17 Th 63.9 21 0.00045 20.8 4.2 38 4-41 70-112 (113)
322 PRK13849 putative crown gall t 63.8 7.8 0.00017 26.3 2.6 20 3-22 22-41 (231)
323 TIGR01007 eps_fam capsular exo 63.1 8.3 0.00018 25.1 2.6 21 3-23 38-58 (204)
324 PF11080 DUF2622: Protein of u 62.9 15 0.00032 22.1 3.4 39 23-61 32-74 (96)
325 PRK09754 phenylpropionate diox 62.9 6.7 0.00015 28.3 2.3 24 1-24 16-41 (396)
326 cd09011 Glo_EDI_BRP_like_23 Th 62.8 28 0.00061 20.2 4.7 38 6-43 81-119 (120)
327 PRK04101 fosfomycin resistance 62.5 19 0.00041 21.8 4.0 40 4-43 80-119 (139)
328 TIGR03378 glycerol3P_GlpB glyc 62.3 6.9 0.00015 29.3 2.3 21 1-21 13-33 (419)
329 KOG2404 Fumarate reductase, fl 62.2 8.5 0.00018 28.6 2.6 27 1-27 22-48 (477)
330 cd08364 FosX FosX, a fosfomyci 62.1 22 0.00047 21.3 4.2 36 4-41 83-120 (131)
331 PLN03049 pyridoxine (pyridoxam 62.1 5.9 0.00013 29.9 1.9 18 1-18 76-93 (462)
332 cd07246 Glo_EDI_BRP_like_8 Thi 62.1 18 0.00038 20.7 3.7 36 7-43 86-122 (122)
333 PRK07251 pyridine nucleotide-d 62.0 7.8 0.00017 28.3 2.5 25 2-26 171-195 (438)
334 TIGR02016 BchX chlorophyllide 61.9 10 0.00022 26.7 3.0 21 3-23 20-40 (296)
335 PF07015 VirC1: VirC1 protein; 61.8 8.1 0.00017 26.7 2.4 21 2-22 21-41 (231)
336 PRK13869 plasmid-partitioning 61.7 7.7 0.00017 28.6 2.4 20 3-22 142-161 (405)
337 cd07243 2_3_CTD_C C-terminal d 61.3 23 0.00049 21.8 4.3 40 3-42 84-124 (143)
338 CHL00175 minD septum-site dete 61.1 10 0.00022 26.0 2.8 23 3-25 36-58 (281)
339 PRK06129 3-hydroxyacyl-CoA deh 60.8 7.7 0.00017 27.2 2.2 21 2-22 16-36 (308)
340 PF03721 UDPG_MGDP_dh_N: UDP-g 60.7 6.6 0.00014 25.8 1.8 22 1-22 13-34 (185)
341 COG0771 MurD UDP-N-acetylmuram 60.6 7.7 0.00017 29.3 2.3 23 1-23 20-42 (448)
342 PRK06724 hypothetical protein; 60.5 25 0.00054 21.4 4.3 40 3-43 80-123 (128)
343 cd08359 Glo_EDI_BRP_like_22 Th 60.5 30 0.00065 19.8 4.5 36 4-40 81-117 (119)
344 cd08354 Glo_EDI_BRP_like_13 Th 59.7 30 0.00065 19.8 4.4 36 4-40 84-119 (122)
345 PRK10291 glyoxalase I; Provisi 59.7 23 0.0005 20.9 4.0 39 3-42 79-119 (129)
346 TIGR01968 minD_bact septum sit 59.7 11 0.00024 25.1 2.8 23 3-25 22-44 (261)
347 PF00903 Glyoxalase: Glyoxalas 59.0 31 0.00068 19.5 4.4 38 3-40 90-128 (128)
348 PRK07819 3-hydroxybutyryl-CoA 58.9 7.7 0.00017 27.1 1.9 21 3-23 20-40 (286)
349 cd07251 Glo_EDI_BRP_like_10 Th 58.9 29 0.00063 19.7 4.3 36 6-42 84-120 (121)
350 PLN02918 pyridoxine (pyridoxam 58.7 7.2 0.00016 30.2 1.9 18 1-18 152-169 (544)
351 PRK13604 luxD acyl transferase 58.7 15 0.00032 26.4 3.3 22 3-24 56-77 (307)
352 PRK05976 dihydrolipoamide dehy 58.3 9.8 0.00021 28.2 2.5 23 2-24 194-216 (472)
353 TIGR02053 MerA mercuric reduct 58.2 9.6 0.00021 28.1 2.4 24 2-25 180-203 (463)
354 PF04820 Trp_halogenase: Trypt 58.0 8.8 0.00019 28.6 2.2 46 2-64 13-61 (454)
355 TIGR01350 lipoamide_DH dihydro 57.5 10 0.00022 27.8 2.4 23 2-24 184-206 (461)
356 cd00431 cysteine_hydrolases Cy 57.4 8.5 0.00018 23.9 1.8 18 1-18 125-142 (161)
357 PRK07512 L-aspartate oxidase; 57.4 8.4 0.00018 29.1 2.1 23 1-25 22-45 (513)
358 COG1249 Lpd Pyruvate/2-oxoglut 57.3 11 0.00024 28.4 2.7 22 4-25 189-210 (454)
359 TIGR00745 apbA_panE 2-dehydrop 57.2 9.7 0.00021 25.9 2.2 20 2-21 5-24 (293)
360 cd01015 CSHase N-carbamoylsarc 57.2 9.3 0.0002 24.6 2.0 18 1-18 129-146 (179)
361 PRK13705 plasmid-partitioning 56.7 11 0.00023 27.7 2.4 20 3-22 127-147 (388)
362 PHA02519 plasmid partition pro 56.7 11 0.00024 27.6 2.5 20 3-22 127-147 (387)
363 TIGR01724 hmd_rel H2-forming N 56.1 11 0.00025 27.5 2.4 20 2-21 34-53 (341)
364 PRK04965 NADH:flavorubredoxin 55.9 11 0.00024 26.9 2.4 24 2-25 155-178 (377)
365 PRK11670 antiporter inner memb 55.9 12 0.00027 27.2 2.6 21 3-23 128-148 (369)
366 PF13614 AAA_31: AAA domain; P 55.6 12 0.00026 22.9 2.3 24 2-25 20-43 (157)
367 PF13579 Glyco_trans_4_4: Glyc 55.4 11 0.00024 22.3 2.1 20 3-22 10-29 (160)
368 PRK13233 nifH nitrogenase redu 55.3 12 0.00025 25.6 2.3 20 3-22 22-42 (275)
369 PF00670 AdoHcyase_NAD: S-aden 55.2 9.6 0.00021 24.9 1.8 20 2-21 37-56 (162)
370 TIGR03815 CpaE_hom_Actino heli 55.2 14 0.00031 25.9 2.8 24 3-26 114-137 (322)
371 cd07252 BphC1-RGP6_N_like N-te 55.2 37 0.0008 19.8 4.3 37 4-40 75-114 (120)
372 PLN02367 lactoylglutathione ly 55.1 37 0.00081 23.5 4.8 37 3-42 183-221 (233)
373 cd08353 Glo_EDI_BRP_like_7 Thi 55.1 32 0.0007 20.5 4.1 38 3-41 101-139 (142)
374 KOG1335 Dihydrolipoamide dehyd 54.9 15 0.00033 27.9 2.9 28 2-29 53-80 (506)
375 PF02737 3HCDH_N: 3-hydroxyacy 54.9 9.2 0.0002 24.9 1.7 20 3-22 14-33 (180)
376 PRK10565 putative carbohydrate 54.7 9.2 0.0002 29.1 1.9 18 1-18 77-94 (508)
377 PF12681 Glyoxalase_2: Glyoxal 54.5 37 0.0008 18.9 4.7 36 4-40 71-107 (108)
378 COG2084 MmsB 3-hydroxyisobutyr 54.0 11 0.00024 26.8 2.1 21 3-23 15-35 (286)
379 cd07238 Glo_EDI_BRP_like_5 Thi 53.7 40 0.00087 19.1 4.7 38 4-42 72-110 (112)
380 cd02042 ParA ParA and ParB of 53.2 19 0.00042 20.6 2.8 20 3-22 20-39 (104)
381 PRK09260 3-hydroxybutyryl-CoA 53.2 12 0.00026 25.9 2.1 20 2-21 15-34 (288)
382 TIGR03453 partition_RepA plasm 53.2 14 0.00031 26.8 2.6 20 3-22 125-144 (387)
383 cd07242 Glo_EDI_BRP_like_6 Thi 53.1 44 0.00094 19.4 4.4 35 6-40 88-125 (128)
384 PRK10818 cell division inhibit 53.0 17 0.00037 24.6 2.9 22 3-24 23-44 (270)
385 PRK06416 dihydrolipoamide dehy 52.9 13 0.00029 27.3 2.5 23 3-25 187-209 (462)
386 PRK04308 murD UDP-N-acetylmura 52.9 13 0.00028 27.3 2.4 23 1-23 18-40 (445)
387 PF06564 YhjQ: YhjQ protein; 52.4 15 0.00032 25.6 2.4 19 3-21 22-40 (243)
388 COG4716 Myosin-crossreactive a 52.1 3 6.5E-05 31.5 -1.0 58 1-59 35-97 (587)
389 PRK06370 mercuric reductase; V 51.9 15 0.00032 27.1 2.6 24 2-25 185-208 (463)
390 cd07241 Glo_EDI_BRP_like_3 Thi 51.8 44 0.00095 19.0 4.6 36 4-40 88-124 (125)
391 TIGR03862 flavo_PP4765 unchara 51.8 14 0.0003 27.2 2.3 19 11-29 1-19 (376)
392 cd08357 Glo_EDI_BRP_like_18 Th 51.6 45 0.00098 19.1 4.9 36 4-40 82-122 (125)
393 cd08360 MhqB_like_C C-terminal 51.4 37 0.0008 20.3 4.0 40 4-43 80-120 (134)
394 PF02558 ApbA: Ketopantoate re 51.2 16 0.00035 22.4 2.4 19 3-21 13-31 (151)
395 PRK07846 mycothione reductase; 51.0 15 0.00032 27.2 2.4 23 2-24 180-202 (451)
396 PRK06292 dihydrolipoamide dehy 51.0 16 0.00034 26.8 2.6 23 3-25 184-206 (460)
397 PRK01710 murD UDP-N-acetylmura 50.6 13 0.00028 27.6 2.1 21 1-21 27-47 (458)
398 TIGR01421 gluta_reduc_1 glutat 50.5 18 0.00039 26.8 2.8 22 3-24 181-202 (450)
399 PRK06467 dihydrolipoamide dehy 50.5 18 0.00039 26.9 2.8 23 3-25 189-211 (471)
400 TIGR03018 pepcterm_TyrKin exop 50.5 19 0.0004 23.7 2.7 23 3-25 56-79 (207)
401 TIGR01816 sdhA_forward succina 50.4 10 0.00022 29.0 1.6 21 7-27 1-21 (565)
402 KOG0409 Predicted dehydrogenas 50.3 16 0.00035 26.6 2.4 20 3-22 50-69 (327)
403 PRK06115 dihydrolipoamide dehy 50.3 16 0.00034 27.2 2.5 22 3-24 189-210 (466)
404 cd08344 MhqB_like_N N-terminal 50.2 48 0.001 19.0 4.3 35 4-40 72-106 (112)
405 PRK11064 wecC UDP-N-acetyl-D-m 49.6 11 0.00025 27.7 1.6 22 1-22 16-37 (415)
406 PRK13231 nitrogenase reductase 49.5 9.3 0.0002 25.9 1.1 19 3-22 22-40 (264)
407 PRK07818 dihydrolipoamide dehy 49.4 16 0.00035 27.0 2.4 23 2-24 186-208 (466)
408 PTZ00318 NADH dehydrogenase-li 49.3 13 0.00027 27.3 1.8 22 1-22 23-44 (424)
409 PRK05249 soluble pyridine nucl 49.3 16 0.00036 26.7 2.4 23 3-25 190-212 (461)
410 PF07075 DUF1343: Protein of u 49.2 19 0.00042 26.5 2.8 37 8-49 108-144 (365)
411 PF00857 Isochorismatase: Isoc 48.9 14 0.00031 23.1 1.9 18 1-18 127-144 (174)
412 PRK02472 murD UDP-N-acetylmura 48.8 15 0.00032 26.9 2.1 21 1-21 18-38 (447)
413 PRK00421 murC UDP-N-acetylmura 48.7 14 0.00031 27.3 2.1 20 3-22 23-42 (461)
414 PRK06327 dihydrolipoamide dehy 48.6 17 0.00036 27.1 2.4 23 2-24 197-219 (475)
415 PRK13512 coenzyme A disulfide 48.6 18 0.00039 26.6 2.6 23 3-25 163-185 (438)
416 PF02780 Transketolase_C: Tran 48.0 17 0.00036 21.9 2.0 18 1-18 25-42 (124)
417 cd08355 Glo_EDI_BRP_like_14 Th 47.8 54 0.0012 18.9 4.8 36 5-41 84-120 (122)
418 PRK07530 3-hydroxybutyryl-CoA 47.7 16 0.00036 25.2 2.1 20 2-21 18-37 (292)
419 cd07263 Glo_EDI_BRP_like_16 Th 47.5 50 0.0011 18.4 4.5 35 5-40 83-117 (119)
420 PRK03803 murD UDP-N-acetylmura 47.5 17 0.00036 26.8 2.2 21 1-21 19-39 (448)
421 COG1192 Soj ATPases involved i 47.4 20 0.00044 24.1 2.5 20 3-22 23-43 (259)
422 cd03111 CpaE_like This protein 47.4 27 0.00058 20.5 2.8 23 3-25 20-43 (106)
423 cd08350 BLMT_like BLMT, a bleo 47.3 46 0.001 19.3 3.9 38 5-42 74-118 (120)
424 COG4747 ACT domain-containing 47.3 29 0.00063 22.0 2.9 26 3-28 55-85 (142)
425 PF13439 Glyco_transf_4: Glyco 46.8 15 0.00033 22.1 1.7 15 3-17 21-35 (177)
426 PRK02006 murD UDP-N-acetylmura 46.8 16 0.00035 27.3 2.1 21 1-21 20-40 (498)
427 TIGR01082 murC UDP-N-acetylmur 46.7 16 0.00035 26.9 2.0 20 3-22 15-34 (448)
428 TIGR03026 NDP-sugDHase nucleot 46.6 14 0.00029 27.1 1.6 21 2-22 14-34 (411)
429 PRK08293 3-hydroxybutyryl-CoA 46.5 19 0.0004 25.0 2.3 20 2-21 17-36 (287)
430 PRK06912 acoL dihydrolipoamide 46.5 19 0.00041 26.6 2.4 24 2-25 184-207 (458)
431 cd07257 THT_oxygenase_C The C- 46.5 66 0.0014 19.9 4.6 39 4-43 85-125 (153)
432 PHA03392 egt ecdysteroid UDP-g 46.4 16 0.00035 27.7 2.1 18 3-20 41-58 (507)
433 cd03784 GT1_Gtf_like This fami 46.3 15 0.00033 26.1 1.9 20 1-20 18-37 (401)
434 KOG2665 Predicted FAD-dependen 46.3 15 0.00033 27.2 1.8 27 1-27 61-89 (453)
435 TIGR01426 MGT glycosyltransfer 46.3 16 0.00036 26.0 2.0 17 1-17 13-29 (392)
436 TIGR00345 arsA arsenite-activa 45.3 25 0.00055 24.5 2.8 21 2-22 4-24 (284)
437 PRK07845 flavoprotein disulfid 44.9 25 0.00054 26.1 2.9 24 3-26 192-215 (466)
438 TIGR01087 murD UDP-N-acetylmur 44.8 19 0.00042 26.2 2.2 22 1-22 12-33 (433)
439 PRK14619 NAD(P)H-dependent gly 44.3 25 0.00054 24.6 2.6 21 2-22 18-38 (308)
440 TIGR03452 mycothione_red mycot 44.1 22 0.00047 26.3 2.4 24 2-25 183-206 (452)
441 PRK07066 3-hydroxybutyryl-CoA 44.0 20 0.00042 25.8 2.1 19 3-21 22-40 (321)
442 TIGR03385 CoA_CoA_reduc CoA-di 43.8 22 0.00047 25.8 2.4 22 2-23 151-172 (427)
443 PRK12557 H(2)-dependent methyl 43.7 22 0.00048 25.7 2.4 21 2-22 34-54 (342)
444 KOG2585 Uncharacterized conser 43.3 18 0.0004 27.4 1.9 23 1-23 283-306 (453)
445 PF02273 Acyl_transf_2: Acyl t 43.1 19 0.0004 25.7 1.8 54 3-63 49-102 (294)
446 cd01014 nicotinamidase_related 43.1 20 0.00044 22.4 1.9 17 2-18 115-131 (155)
447 PRK08269 3-hydroxybutyryl-CoA 43.0 24 0.00052 25.1 2.4 20 3-22 5-24 (314)
448 KOG0404 Thioredoxin reductase 42.6 40 0.00087 23.9 3.4 32 2-33 22-57 (322)
449 TIGR03029 EpsG chain length de 42.6 27 0.00058 23.8 2.6 20 3-22 124-143 (274)
450 COG3640 CooC CO dehydrogenase 42.3 25 0.00055 24.7 2.3 19 6-24 24-42 (255)
451 PRK09287 6-phosphogluconate de 42.0 20 0.00042 27.1 1.9 20 3-22 5-24 (459)
452 PRK04148 hypothetical protein; 42.0 28 0.0006 22.0 2.3 21 2-22 30-50 (134)
453 TIGR02279 PaaC-3OHAcCoADH 3-hy 42.0 19 0.00042 27.4 1.9 20 3-22 20-39 (503)
454 KOG2853 Possible oxidoreductas 41.9 27 0.00059 26.3 2.5 31 1-31 99-142 (509)
455 cd00862 ProRS_anticodon_zinc P 41.8 13 0.00027 24.8 0.8 40 4-43 36-77 (202)
456 cd07253 Glo_EDI_BRP_like_2 Thi 41.5 66 0.0014 18.1 4.5 38 4-41 83-123 (125)
457 TIGR02374 nitri_red_nirB nitri 41.3 21 0.00047 28.5 2.1 23 2-24 154-176 (785)
458 cd02038 FleN-like FleN is a me 41.0 34 0.00073 21.0 2.6 21 2-22 19-39 (139)
459 cd08347 PcpA_C_like C-terminal 40.9 60 0.0013 20.3 3.8 56 4-64 83-138 (157)
460 PRK06522 2-dehydropantoate 2-r 40.7 28 0.00061 23.8 2.4 19 2-20 14-32 (304)
461 PF02310 B12-binding: B12 bind 40.6 24 0.00052 20.7 1.8 22 2-23 19-40 (121)
462 TIGR03840 TMPT_Se_Te thiopurin 40.3 23 0.0005 23.7 1.9 19 4-22 49-67 (213)
463 cd01983 Fer4_NifH The Fer4_Nif 40.2 33 0.00071 18.5 2.3 16 3-18 19-34 (99)
464 PLN02785 Protein HOTHEAD 40.2 22 0.00047 27.6 1.9 20 2-22 69-88 (587)
465 PF01624 MutS_I: MutS domain I 39.8 35 0.00075 20.3 2.5 21 4-24 70-90 (113)
466 PF12146 Hydrolase_4: Putative 39.7 34 0.00074 19.2 2.3 19 3-21 35-53 (79)
467 cd01012 YcaC_related YcaC rela 39.6 27 0.00057 21.9 2.0 17 2-18 104-120 (157)
468 PRK08268 3-hydroxy-acyl-CoA de 39.5 22 0.00048 27.1 1.9 20 3-22 22-41 (507)
469 PRK08010 pyridine nucleotide-d 39.2 35 0.00075 25.0 2.8 23 3-25 173-195 (441)
470 PRK14618 NAD(P)H-dependent gly 39.0 26 0.00056 24.6 2.1 21 2-22 18-38 (328)
471 PRK08229 2-dehydropantoate 2-r 39.0 27 0.0006 24.5 2.2 20 2-21 16-35 (341)
472 TIGR03081 metmalonyl_epim meth 38.9 60 0.0013 18.6 3.4 35 4-40 87-126 (128)
473 cd01075 NAD_bind_Leu_Phe_Val_D 38.9 32 0.0007 22.7 2.4 20 2-21 42-61 (200)
474 COG0569 TrkA K+ transport syst 38.8 30 0.00065 23.3 2.3 21 2-22 14-34 (225)
475 PTZ00142 6-phosphogluconate de 38.7 25 0.00055 26.6 2.1 22 2-23 15-36 (470)
476 cd07237 BphC1-RGP6_C_like C-te 38.5 79 0.0017 19.5 4.1 40 3-43 90-131 (154)
477 PRK12921 2-dehydropantoate 2-r 38.5 32 0.00069 23.6 2.4 18 2-19 14-31 (305)
478 TIGR03309 matur_yqeB selenium- 38.5 27 0.00059 24.6 2.0 21 2-22 12-32 (256)
479 TIGR03213 23dbph12diox 2,3-dih 38.3 68 0.0015 21.9 4.1 37 3-39 75-114 (286)
480 PRK01390 murD UDP-N-acetylmura 38.3 25 0.00053 26.0 1.9 20 1-20 22-41 (460)
481 PRK04690 murD UDP-N-acetylmura 38.2 32 0.00068 25.7 2.5 20 2-21 22-41 (468)
482 PRK14989 nitrite reductase sub 38.1 27 0.00059 28.4 2.3 24 2-25 159-182 (847)
483 TIGR01692 HIBADH 3-hydroxyisob 38.0 31 0.00067 23.9 2.3 20 2-21 10-29 (288)
484 cd08342 HPPD_N_like N-terminal 38.0 85 0.0018 18.7 4.1 38 4-42 84-122 (136)
485 PRK06035 3-hydroxyacyl-CoA deh 37.8 29 0.00062 24.0 2.1 21 2-22 17-37 (291)
486 PRK03806 murD UDP-N-acetylmura 37.6 28 0.0006 25.5 2.1 22 1-22 19-40 (438)
487 PRK11609 nicotinamidase/pyrazi 37.5 29 0.00062 22.9 2.0 18 1-18 157-174 (212)
488 COG1087 GalE UDP-glucose 4-epi 37.4 33 0.00072 25.0 2.4 16 3-18 16-31 (329)
489 cd00861 ProRS_anticodon_short 37.4 36 0.00079 18.9 2.2 28 3-30 23-50 (94)
490 PF09001 DUF1890: Domain of un 37.0 17 0.00036 23.3 0.7 16 2-17 18-33 (139)
491 PRK06249 2-dehydropantoate 2-r 37.0 41 0.00088 23.6 2.8 20 2-21 19-38 (313)
492 TIGR02374 nitri_red_nirB nitri 36.9 32 0.0007 27.5 2.5 24 1-24 11-37 (785)
493 TIGR01505 tartro_sem_red 2-hyd 36.8 30 0.00066 23.8 2.1 19 3-21 14-32 (291)
494 cd01013 isochorismatase Isocho 36.7 28 0.0006 23.0 1.8 18 1-18 157-174 (203)
495 PF04445 SAM_MT: Putative SAM- 36.4 18 0.0004 25.0 1.0 21 4-24 90-110 (234)
496 PRK10742 putative methyltransf 36.4 22 0.00048 24.9 1.3 21 4-24 103-123 (250)
497 cd06587 Glo_EDI_BRP_like This 36.3 72 0.0016 17.1 3.6 35 5-39 77-111 (112)
498 TIGR03614 RutB pyrimidine util 36.3 29 0.00062 23.3 1.9 20 1-20 166-185 (226)
499 PRK14573 bifunctional D-alanyl 36.2 29 0.00062 27.8 2.1 22 1-22 17-39 (809)
500 cd08363 FosB FosB, a fosfomyci 36.1 78 0.0017 18.9 3.7 35 4-40 76-112 (131)
No 1
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=99.79 E-value=1.7e-19 Score=132.79 Aligned_cols=86 Identities=45% Similarity=0.801 Sum_probs=77.6
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCceeeeCceeeEEcc---
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENLLMKDHTHKFVNK--- 77 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l~~~~~~~~~~~~--- 77 (87)
|+||++|+++|++|+|||+++++||+++||++.+|.+.|+|.|+|++.|+|+++++++++.++.+++......|...
T Consensus 13 L~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~~dg~~~E~glh~f~~~Y~n~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 92 (485)
T COG3349 13 LAAAYELADAGYDVTLYEARDRLGGKVASWRDSDGNHVEHGLHVFFGCYYNLLTLLKELPIEDRLQLREHTKTFVGSGTR 92 (485)
T ss_pred HHHHHHHHhCCCceEEEeccCccCceeeeeecCCCCeeeeeeEEechhHHHHHHHhhhCCchheeehHhhhhhhcccCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999888877543
Q ss_pred CCeEEEEec
Q 034688 78 GGEIGGIVI 86 (87)
Q Consensus 78 ~g~~~~~~~ 86 (87)
.|.+.+++.
T Consensus 93 ~g~~~~~~~ 101 (485)
T COG3349 93 PGAIGRFAR 101 (485)
T ss_pred CCccccccc
Confidence 555554443
No 2
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=99.66 E-value=3.6e-16 Score=113.50 Aligned_cols=86 Identities=35% Similarity=0.588 Sum_probs=72.3
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCceeeeCceeeEEc--cC
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENLLMKDHTHKFVN--KG 78 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l~~~~~~~~~~~--~~ 78 (87)
|+||++|+++|++|+|||+++++||+++|+++.+|+.+|.|+|+++..++++.++++++|+.+.+.+......+.. .+
T Consensus 12 l~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~ 91 (453)
T TIGR02731 12 LSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLLKELNIEDRLQWKSHSMIFNQPDKP 91 (453)
T ss_pred HHHHHHHHHCCCcEEEEecCCCCCCCcceeECCCCCEEEcCcceeccCCchHHHHHHHcCCccceeecCCceEEecCCCC
Confidence 6899999999999999999999999999987557899999999999999999999999999887777665555543 24
Q ss_pred CeEEEEec
Q 034688 79 GEIGGIVI 86 (87)
Q Consensus 79 g~~~~~~~ 86 (87)
++...+++
T Consensus 92 ~~~~~~~~ 99 (453)
T TIGR02731 92 GTFSRFDF 99 (453)
T ss_pred cceeeccC
Confidence 55554443
No 3
>PLN02612 phytoene desaturase
Probab=99.63 E-value=1.1e-15 Score=114.60 Aligned_cols=87 Identities=37% Similarity=0.594 Sum_probs=74.7
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCceeeeCceeeEEc--cC
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENLLMKDHTHKFVN--KG 78 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l~~~~~~~~~~~--~~ 78 (87)
|+||++|+++|++|+|+|+++++||++.|+++.+|+++|.|+|++++.++++.++++++|+.+.+.+......+.. ..
T Consensus 106 l~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~~G~~~D~G~h~~~g~~~~~~~ll~elG~~~~~~~~~~~~~~~~~~~~ 185 (567)
T PLN02612 106 LSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNVQNLFGELGINDRLQWKEHSMIFAMPNKP 185 (567)
T ss_pred HHHHHHHHhcCCeEEEEecCCCCCCcceeeEcCCCCEEcCCceEEeCCCchHHHHHHHhCCcccceecccceEEEecCCC
Confidence 6899999999999999999999999999998667999999999999999999999999999988888776665543 24
Q ss_pred CeEEEEecC
Q 034688 79 GEIGGIVIS 87 (87)
Q Consensus 79 g~~~~~~~~ 87 (87)
+++..+++|
T Consensus 186 ~~~~~~~~p 194 (567)
T PLN02612 186 GEFSRFDFP 194 (567)
T ss_pred CceeeCcCc
Confidence 566655543
No 4
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=99.63 E-value=7.3e-16 Score=110.91 Aligned_cols=67 Identities=25% Similarity=0.437 Sum_probs=60.4
Q ss_pred ChhHHHHhhCC--CcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCceeee
Q 034688 1 MSTAVELLDQG--HEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENLLMK 68 (87)
Q Consensus 1 L~aA~~L~~~G--~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l~~~ 68 (87)
|+||+.|+++| ++|+|||+++++||+++|.+ .+|+++|.|+|+|++.++++.++++++|+.+.....
T Consensus 13 L~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~-~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~~~ 81 (451)
T PRK11883 13 LSAAYRLHKKGPDADITLLEASDRLGGKIQTVR-KDGFPIELGPESFLARKPSAPALVKELGLEDELVAN 81 (451)
T ss_pred HHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEe-eCCeEEecChHHhcCCcHHHHHHHHHcCCccceecC
Confidence 68999999988 89999999999999999987 468999999999999999999999999998654443
No 5
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=99.63 E-value=9.6e-16 Score=111.09 Aligned_cols=66 Identities=23% Similarity=0.295 Sum_probs=60.8
Q ss_pred ChhHHHHhhC----CCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCceee
Q 034688 1 MSTAVELLDQ----GHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENLLM 67 (87)
Q Consensus 1 L~aA~~L~~~----G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l~~ 67 (87)
|+||++|+++ |++|+|||+++++||+++|.. .+|+++|.|+|+|+..++++.++++++|++..+.+
T Consensus 15 L~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~-~~g~~~e~G~~~~~~~~~~~~~l~~~lgl~~~~~~ 84 (462)
T TIGR00562 15 LCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVK-EDGYLIERGPDSFLERKKSAPDLVKDLGLEHVLVS 84 (462)
T ss_pred HHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEe-eCCEEEecCccccccCChHHHHHHHHcCCCccccc
Confidence 6899999998 999999999999999999986 56899999999999999999999999999876554
No 6
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=99.63 E-value=7.6e-16 Score=112.99 Aligned_cols=85 Identities=25% Similarity=0.420 Sum_probs=77.3
Q ss_pred ChhHHHHhhCC--CcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCceeeeCceeeEEccC
Q 034688 1 MSTAVELLDQG--HEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENLLMKDHTHKFVNKG 78 (87)
Q Consensus 1 L~aA~~L~~~G--~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l~~~~~~~~~~~~~ 78 (87)
|+|||+|++++ .+|+|||+++++||.++|++ .+|+.+|.|+|.|....+.+.++++++|+++.+.|+....-|+..+
T Consensus 13 LsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~-~~G~~~e~G~~~f~~~~~~~l~li~eLGled~l~~~~~~~~~i~~~ 91 (444)
T COG1232 13 LSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVK-IDGFLFERGPHHFLARKEEILDLIKELGLEDKLLWNSTARKYIYYD 91 (444)
T ss_pred HHHHHHHHHhCCCCcEEEEecCCCCCceEEEEe-eCCEEEeechhheecchHHHHHHHHHhCcHHhhccCCcccceEeeC
Confidence 79999999999 99999999999999999996 6799999999999988788999999999999999887666688889
Q ss_pred CeEEEEec
Q 034688 79 GEIGGIVI 86 (87)
Q Consensus 79 g~~~~~~~ 86 (87)
|++..+..
T Consensus 92 gkl~p~P~ 99 (444)
T COG1232 92 GKLHPIPT 99 (444)
T ss_pred CcEEECCc
Confidence 99887654
No 7
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=99.63 E-value=1.5e-15 Score=107.82 Aligned_cols=65 Identities=38% Similarity=0.663 Sum_probs=58.5
Q ss_pred hhHHHHhhCCCcEEEEeeCCCcCceEEEEeccC-CeEEeeeeEEEeCCChHHHHHHHHcCCCCcee
Q 034688 2 STAVELLDQGHEVDIYELRSFIGGKVASFVCKR-GNHIEISLHVFFGCYNNLFRLTKKVGADENLL 66 (87)
Q Consensus 2 ~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~-g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l~ 66 (87)
+||++|+++|++|+|||+++++||+++|+...+ ++++|.|+|++++.++++.++++++|++..+.
T Consensus 1 ~AA~~L~~~G~~v~vlEa~~~~GG~~~t~~~~g~~~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~ 66 (419)
T TIGR03467 1 SAAVELARAGARVTLFEARPRLGGRARSFEDGGLGQTIDNGQHVLLGAYTNLLALLRRIGAEPRLQ 66 (419)
T ss_pred ChHHHHHhCCCceEEEecCCCCCCceeEeecCCCCcceecCCEEEEcccHHHHHHHHHhCCchhhh
Confidence 699999999999999999999999999987432 45699999999999999999999999987655
No 8
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=99.62 E-value=1.8e-15 Score=111.36 Aligned_cols=82 Identities=77% Similarity=1.273 Sum_probs=71.8
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCceeeeCceeeEEccCCe
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENLLMKDHTHKFVNKGGE 80 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l~~~~~~~~~~~~~g~ 80 (87)
|+||+.|+++|++|+|||+++++||+++|+.+.+|+.+|.|+|+|++.++++.++++++|+.+.+.+......+...+++
T Consensus 12 l~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~ 91 (474)
T TIGR02732 12 LSTAVELVDAGHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFFGCYANLFRLMKKVGAEDNLLLKEHTHTFVNKGGD 91 (474)
T ss_pred HHHHHHHHHCCCcEEEEEecCCCCceeeeeecCCCceEeeceEEecCchHHHHHHHHHcCCccccccccceeEEEcCCCc
Confidence 68999999999999999999999999999876679999999999999999999999999999877766655556555666
Q ss_pred EE
Q 034688 81 IG 82 (87)
Q Consensus 81 ~~ 82 (87)
..
T Consensus 92 ~~ 93 (474)
T TIGR02732 92 IG 93 (474)
T ss_pred cc
Confidence 54
No 9
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=99.62 E-value=1.1e-15 Score=111.29 Aligned_cols=80 Identities=15% Similarity=0.280 Sum_probs=65.3
Q ss_pred ChhHHHHhhC------CCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCceeeeCceeeE
Q 034688 1 MSTAVELLDQ------GHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENLLMKDHTHKF 74 (87)
Q Consensus 1 L~aA~~L~~~------G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l~~~~~~~~~ 74 (87)
|+||++|+++ |++|+|||+++++||+++|.+ .+|+++|.|+|+++..++++.++++++|+++.+.+......+
T Consensus 14 L~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~-~~g~~~e~G~~~i~~~~~~~~~l~~~lgl~~~~~~~~~~~~~ 92 (463)
T PRK12416 14 LSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVE-EKDFIMESGADSIVARNEHVMPLVKDLNLEEEMVYNETGISY 92 (463)
T ss_pred HHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEe-eCCEEEecCcHHHhcCCHHHHHHHHHcCCccceecCCCCceE
Confidence 6899999986 489999999999999999987 468999999999999999999999999998776555432333
Q ss_pred EccCCeE
Q 034688 75 VNKGGEI 81 (87)
Q Consensus 75 ~~~~g~~ 81 (87)
.+.++++
T Consensus 93 ~~~~~~~ 99 (463)
T PRK12416 93 IYSDNTL 99 (463)
T ss_pred EEECCeE
Confidence 3334444
No 10
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=99.62 E-value=1.6e-15 Score=106.00 Aligned_cols=65 Identities=31% Similarity=0.590 Sum_probs=57.9
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccC-CeEEeeeeEEEeCCChHHHHHHHHcCCCCce
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKR-GNHIEISLHVFFGCYNNLFRLTKKVGADENL 65 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~-g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l 65 (87)
|+||++|+++|++|+|||+++++|||++|++... |+.+|.|+++|+..++++..+++++++...+
T Consensus 4 L~aA~~L~~~G~~v~vlEa~~r~GGr~~t~~~~~~g~~~e~G~~~~~~~~~~~~~~~~~l~~~~~~ 69 (450)
T PF01593_consen 4 LAAAYYLAKAGYDVTVLEASDRVGGRIRTFRFDNPGFTFELGAHRFFGMYPNLLNLIDELGLELSL 69 (450)
T ss_dssp HHHHHHHHHTTTEEEEEESSSSSBTTS-EEEETTTTEEEESSS-EEETTSHHHHHHHHHHTHHTTE
T ss_pred HHHHHHHHhCCCCEEEEEcCCCCCcceEEecCCccceeecCCcccccccchhhHHHHHHhhhcccc
Confidence 6899999999999999999999999999998664 8999999999999999999999999986443
No 11
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=99.61 E-value=9.2e-16 Score=86.74 Aligned_cols=58 Identities=33% Similarity=0.607 Sum_probs=52.2
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeC--CChHHHHHHHHc
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFG--CYNNLFRLTKKV 59 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~--~~~~~~~l~~~l 59 (87)
|+||+.|+++|++|+|||+++++||++++++. +|+.+|.|+|+|.. .++++.+++++|
T Consensus 9 l~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~-~g~~~d~g~~~~~~~~~~~~~~~l~~~L 68 (68)
T PF13450_consen 9 LAAAYYLAKAGYRVTVFEKNDRLGGRARSFRI-PGYRFDLGAHYFFPPDDYPNLFRLLREL 68 (68)
T ss_dssp HHHHHHHHHTTSEEEEEESSSSSSGGGCEEEE-TTEEEETSS-SEEETTSCHHHHHHHHTT
T ss_pred HHHHHHHHHCCCcEEEEecCcccCcceeEEEE-CCEEEeeccEEEeCCCCchHHHHHHcCC
Confidence 68999999999999999999999999999875 67999999999987 578899999875
No 12
>PLN02487 zeta-carotene desaturase
Probab=99.59 E-value=8.4e-15 Score=110.21 Aligned_cols=85 Identities=82% Similarity=1.303 Sum_probs=73.9
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCceeeeCceeeEEccCCe
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENLLMKDHTHKFVNKGGE 80 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l~~~~~~~~~~~~~g~ 80 (87)
|+||+.|+++|++|+|||+++++||+++++++.+|+.+|.|+|++++.++++.++++++|+.+.+.+......|...+|+
T Consensus 88 l~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~~~~~~~~~ll~~LGl~~~~~~~~~~~~~~~~~g~ 167 (569)
T PLN02487 88 MSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFGCYNNLFRLMKKVGADENLLVKDHTHTFVNKGGD 167 (569)
T ss_pred HHHHHHHHhCCCeeEEEecCCCCCCceeeeeecCCcEEecceeEecCCcHHHHHHHHhcCCcccccccccceeEEecCCE
Confidence 68999999999999999999999999999976679999999999999999999999999999887766655556566777
Q ss_pred EEEEe
Q 034688 81 IGGIV 85 (87)
Q Consensus 81 ~~~~~ 85 (87)
+..+.
T Consensus 168 ~~~~~ 172 (569)
T PLN02487 168 VGELD 172 (569)
T ss_pred Eeeec
Confidence 65443
No 13
>PRK07233 hypothetical protein; Provisional
Probab=99.57 E-value=4.7e-15 Score=106.01 Aligned_cols=76 Identities=28% Similarity=0.464 Sum_probs=65.9
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCceeeeCceeeEEcc
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENLLMKDHTHKFVNK 77 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l~~~~~~~~~~~~ 77 (87)
|+||+.|+++|++|+|+|+++++||+++|++. +|+.+|.|.|+++..++++.++++++|+.+.+.+......+.+.
T Consensus 12 L~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~-~g~~~d~g~~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~~~ 87 (434)
T PRK07233 12 LAAAYRLAKRGHEVTVFEADDQLGGLAASFEF-GGLPIERFYHHIFKSDEALLELLDELGLEDKLRWRETKTGYYVD 87 (434)
T ss_pred HHHHHHHHHCCCcEEEEEeCCCCCCceeeecc-CCcchhhhhhhhccccHHHHHHHHHcCCCCceeeccCceEEEEC
Confidence 68999999999999999999999999999874 58999999999999999999999999998776666544444333
No 14
>PLN02576 protoporphyrinogen oxidase
Probab=99.53 E-value=2.8e-14 Score=104.52 Aligned_cols=82 Identities=22% Similarity=0.329 Sum_probs=67.7
Q ss_pred ChhHHHHhhC-CCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCceeeeCc-eeeEEccC
Q 034688 1 MSTAVELLDQ-GHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENLLMKDH-THKFVNKG 78 (87)
Q Consensus 1 L~aA~~L~~~-G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l~~~~~-~~~~~~~~ 78 (87)
|+||++|+++ |++|+|||+++++||+++|.+ .+|+++|.|+|+|+..++.+..++++ |+.+.+.+... ...+...+
T Consensus 25 L~aA~~L~~~~g~~v~vlEa~~rvGGr~~t~~-~~g~~~d~G~~~~~~~~~~~~~l~~~-gl~~~~~~~~~~~~~~~~~~ 102 (496)
T PLN02576 25 LAAAYALASKHGVNVLVTEARDRVGGNITSVS-EDGFIWEEGPNSFQPSDPELTSAVDS-GLRDDLVFPDPQAPRYVVWN 102 (496)
T ss_pred HHHHHHHHHhcCCCEEEEecCCCCCCceeEec-cCCeEEecCCchhccCcHHHHHHHHc-CChhheecCCCCceEEEEEC
Confidence 7899999999 999999999999999999987 46899999999999999889888888 88877665442 23444457
Q ss_pred CeEEEE
Q 034688 79 GEIGGI 84 (87)
Q Consensus 79 g~~~~~ 84 (87)
|++..+
T Consensus 103 g~~~~~ 108 (496)
T PLN02576 103 GKLRPL 108 (496)
T ss_pred CEEEEc
Confidence 776543
No 15
>PRK07208 hypothetical protein; Provisional
Probab=99.48 E-value=1.2e-13 Score=100.85 Aligned_cols=64 Identities=27% Similarity=0.481 Sum_probs=58.4
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCce
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENL 65 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l 65 (87)
|+||+.|+++|++|+|+|+++++||+++|.. .+|+++|.|+|+++..++++.+++++++..+.+
T Consensus 17 L~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~-~~g~~~d~G~h~~~~~~~~~~~l~~~l~~~~~~ 80 (479)
T PRK07208 17 LTAAYELLKRGYPVTVLEADPVVGGISRTVT-YKGNRFDIGGHRFFSKSPEVMDLWNEILPDDDF 80 (479)
T ss_pred HHHHHHHHHCCCcEEEEecCCCCCceeeeec-cCCceEccCCceeccCCHHHHHHHHHhcCCCcc
Confidence 6899999999999999999999999999976 468999999999999999999999999974443
No 16
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.48 E-value=7.7e-14 Score=103.77 Aligned_cols=75 Identities=32% Similarity=0.565 Sum_probs=63.4
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChH-HHHHHHHcCCCCceeeeCceeeEEc
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNN-LFRLTKKVGADENLLMKDHTHKFVN 76 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~-~~~l~~~lg~~~~l~~~~~~~~~~~ 76 (87)
|+||..|.+.|++|+|||+++|+|||++|++...+.++|+|++++++.+.| +..+.+++|++.. .+......|..
T Consensus 28 LsAArqL~~~G~~V~VLEARdRvGGRI~t~~~~~~~~vd~Gas~~~g~~~npl~~l~~qlgl~~~-~~~~~~~l~~~ 103 (501)
T KOG0029|consen 28 LSAARQLQDFGFDVLVLEARDRVGGRIYTFKSEGGDHVDLGASVLTGVYNNPLALLSKQLGLELY-KVRDTCPLFNE 103 (501)
T ss_pred HHHHHHHHHcCCceEEEeccCCcCceeEEEecCCCCeeecCCceecCcCccHHHHHHHHhCcccc-eeccccccccc
Confidence 689999999999999999999999999999977777899999999999886 6777799999874 33444444443
No 17
>PLN02268 probable polyamine oxidase
Probab=99.45 E-value=1.5e-13 Score=99.32 Aligned_cols=62 Identities=26% Similarity=0.340 Sum_probs=54.7
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCC--ChHHHHHHHHcCCCC
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGC--YNNLFRLTKKVGADE 63 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~--~~~~~~l~~~lg~~~ 63 (87)
|+||+.|.++|++|+|+|+++|+|||++|.+ .+|+.+|+|++|+++. .+.+.++++++|++.
T Consensus 13 L~aA~~L~~~g~~v~vlEa~~r~GGri~t~~-~~g~~~d~G~~~i~~~~~~~~~~~l~~~lgl~~ 76 (435)
T PLN02268 13 IAAARALHDASFKVTLLESRDRIGGRVHTDY-SFGFPVDMGASWLHGVCNENPLAPLIGRLGLPL 76 (435)
T ss_pred HHHHHHHHhCCCeEEEEeCCCCCCceeeecC-cCCcccCCCCeeEeccCCCchHHHHHHHhCCce
Confidence 6899999999999999999999999999965 4689999999999863 334889999999964
No 18
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.40 E-value=1.9e-12 Score=95.21 Aligned_cols=60 Identities=23% Similarity=0.274 Sum_probs=52.8
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCC
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGAD 62 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~ 62 (87)
|+||..|+++|++|+|+|+++++||+++|++ .+|+.+|.|+|++... ..+.++++++|.+
T Consensus 11 L~aA~~La~~G~~V~VlE~~~~~GG~~~t~~-~~G~~fD~G~~~~~~~-~~~~~l~~~lg~~ 70 (502)
T TIGR02734 11 LALAIRLAAAGIPVTVVEQRDKPGGRAGVLE-DDGFRFDTGPTVITMP-EALEELFALAGRD 70 (502)
T ss_pred HHHHHHHHhCCCcEEEEECCCCCcCceEEEe-cCCeEEecCCeEEccc-cHHHHHHHHcCCC
Confidence 7899999999999999999999999999997 4799999999998743 3467788999853
No 19
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=99.35 E-value=4.4e-12 Score=93.18 Aligned_cols=78 Identities=19% Similarity=0.219 Sum_probs=60.2
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCC--ChHHHHHHHHcCCCCc-eeeeCceeeEEcc
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGC--YNNLFRLTKKVGADEN-LLMKDHTHKFVNK 77 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~--~~~~~~l~~~lg~~~~-l~~~~~~~~~~~~ 77 (87)
|+||..|+++|++|+|||+++++||+++|++. +|+.+|.|+|++... ...+.++++++|+... +...++.......
T Consensus 14 L~aa~~La~~G~~v~vlE~~~~~GG~~~t~~~-~G~~fD~G~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~d~~~~~~~~ 92 (492)
T TIGR02733 14 LTAAALLAKRGYRVTLLEQHAQPGGCAGTFRR-RGFTFDVGATQVAGLEPGGIHARIFRELGIPLPEAKILDPACAVDLP 92 (492)
T ss_pred HHHHHHHHHCCCeEEEEecCCCCCCccceecc-CCEEEeecceEEEecCcCCHHHHHHHHcCCCCcccccCCCCcEEEEC
Confidence 68999999999999999999999999999974 799999999998753 3346778899998732 2223333334444
Q ss_pred CC
Q 034688 78 GG 79 (87)
Q Consensus 78 ~g 79 (87)
+|
T Consensus 93 dg 94 (492)
T TIGR02733 93 DG 94 (492)
T ss_pred CC
Confidence 54
No 20
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=99.28 E-value=1.4e-11 Score=88.56 Aligned_cols=63 Identities=29% Similarity=0.469 Sum_probs=56.7
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEEEe---ccCCeEEeeeeEEEeC-CChHHHHHHHHcCCCCc
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVASFV---CKRGNHIEISLHVFFG-CYNNLFRLTKKVGADEN 64 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~---~~~g~~~d~G~~~~~~-~~~~~~~l~~~lg~~~~ 64 (87)
|||||.|++. ++||+||+..++||+++|.. +.+|..+|.|.++... +|||+.++++++|.+..
T Consensus 21 LSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv~~~~d~~g~~vDtGfiVyn~~tYpnl~~Lf~~iGv~t~ 87 (447)
T COG2907 21 LSAAWLLSRR-HDVTLFEADRRLGGHANTVAGNTDGGGVFVDTGFIVYNERTYPNLTRLFKTIGVDTK 87 (447)
T ss_pred hhhHHhhhcc-cceEEEeccccccCccceeeccccCCceeecceeEEecCCCcchHHHHHHHcCCCCc
Confidence 7899999776 89999999999999999985 4457789999999987 89999999999999864
No 21
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=99.25 E-value=1.5e-11 Score=89.92 Aligned_cols=83 Identities=20% Similarity=0.285 Sum_probs=67.3
Q ss_pred ChhHHHHhhCCCcE--EEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCCh---HHHHHHHHcCCCCceeeeCcee---
Q 034688 1 MSTAVELLDQGHEV--DIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYN---NLFRLTKKVGADENLLMKDHTH--- 72 (87)
Q Consensus 1 L~aA~~L~~~G~~V--~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~---~~~~l~~~lg~~~~l~~~~~~~--- 72 (87)
|+|||+|++++-+| +|||+++|+||+++|.+..+|+++|-|++.+-...+ +++++++++|+++.++..+.+.
T Consensus 24 L~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtlrpag~~g~~~l~lv~dLGl~~e~~~i~~~~paa 103 (491)
T KOG1276|consen 24 LCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQNGFIFEEGPRTLRPAGPGGAETLDLVSDLGLEDELQPIDISHPAA 103 (491)
T ss_pred HHHHHHHHhcCCCceEEEEecCCcccceeeeccCCCceeeccCCCccCcCCcchhHHHHHHHHcCccceeeecCCCChhh
Confidence 78999999998655 559999999999999655669999999999988776 7999999999998877765542
Q ss_pred --eEEccCCeEEE
Q 034688 73 --KFVNKGGEIGG 83 (87)
Q Consensus 73 --~~~~~~g~~~~ 83 (87)
.|....|+++.
T Consensus 104 knr~l~~~~~L~~ 116 (491)
T KOG1276|consen 104 KNRFLYVPGKLPT 116 (491)
T ss_pred hheeeccCccccc
Confidence 44455665543
No 22
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.21 E-value=7.4e-11 Score=87.35 Aligned_cols=60 Identities=20% Similarity=0.326 Sum_probs=49.3
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcC-CCC
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVG-ADE 63 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg-~~~ 63 (87)
|+||..|+++|++|+||||++++||+++|.... |+.+|.|++++...... .++++++ +..
T Consensus 16 L~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e~~-Gf~fd~G~~~~~~~~~~--~~~~~l~~l~~ 76 (487)
T COG1233 16 LAAAALLARAGLKVTVLEKNDRVGGRARTFELD-GFRFDTGPSWYLMPDPG--PLFRELGNLDA 76 (487)
T ss_pred HHHHHHHHhCCCEEEEEEecCCCCcceEEEecc-ceEeccCcceeecCchH--HHHHHhccCcc
Confidence 689999999999999999999999999998744 99999999888654432 5555555 443
No 23
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.19 E-value=8.4e-11 Score=86.70 Aligned_cols=78 Identities=23% Similarity=0.334 Sum_probs=57.7
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCC----ChH-HHHHHHHcCCCCceeeeCceeeEE
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGC----YNN-LFRLTKKVGADENLLMKDHTHKFV 75 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~----~~~-~~~l~~~lg~~~~l~~~~~~~~~~ 75 (87)
|+||..|+++|++|+|+||++.+||++++++ .+|+.+|.|+|++... .++ +.+.++.++.............+.
T Consensus 13 l~aA~~La~~G~~V~vlE~~~~~GG~~~~~~-~~G~~fd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (493)
T TIGR02730 13 LVTATQLAVKGAKVLVLERYLIPGGSAGYFE-REGYRFDVGASMIFGFGDKGTTNLLTRALAAVGRKLETIPDPVQIHYH 91 (493)
T ss_pred HHHHHHHHHCCCcEEEEECCCCCCCceeEec-cCCEEEEecchhheecCCcccccHHHHHHHHcCCcccccCCCccEEEE
Confidence 6899999999999999999999999999987 4799999999987642 334 566777777543333333223333
Q ss_pred ccCC
Q 034688 76 NKGG 79 (87)
Q Consensus 76 ~~~g 79 (87)
..+|
T Consensus 92 ~~~g 95 (493)
T TIGR02730 92 LPNG 95 (493)
T ss_pred CCCC
Confidence 4444
No 24
>PLN02568 polyamine oxidase
Probab=99.15 E-value=8.8e-11 Score=88.11 Aligned_cols=63 Identities=21% Similarity=0.384 Sum_probs=55.3
Q ss_pred ChhHHHHhhCC-----CcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCC-ChHHHHHHHHcCCCCc
Q 034688 1 MSTAVELLDQG-----HEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGC-YNNLFRLTKKVGADEN 64 (87)
Q Consensus 1 L~aA~~L~~~G-----~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~-~~~~~~l~~~lg~~~~ 64 (87)
|+||+.|++.| ++|+|||+++++|||++|++. .|+.+|.|++++++. .+.+.++++++|+...
T Consensus 18 l~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t~~~-~g~~~d~G~~~~~g~~~~~~~~l~~~~g~~~~ 86 (539)
T PLN02568 18 LTAANKLYTSSAANDMFELTVVEGGDRIGGRINTSEF-GGERIEMGATWIHGIGGSPVYKIAQEAGSLES 86 (539)
T ss_pred HHHHHHHHhcccccCCceEEEEeCCCCcCCeEEEEEe-CCeEEecCCceeCCCCCCHHHHHHHHhCCccc
Confidence 68999999887 999999999999999999874 589999999999975 4458899999999543
No 25
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=99.10 E-value=2.2e-10 Score=84.54 Aligned_cols=59 Identities=31% Similarity=0.499 Sum_probs=51.5
Q ss_pred ChhHHHHhhCC-CcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCC-ChHHHHHHHHcC
Q 034688 1 MSTAVELLDQG-HEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGC-YNNLFRLTKKVG 60 (87)
Q Consensus 1 L~aA~~L~~~G-~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~-~~~~~~l~~~lg 60 (87)
|+||.+|.++| .+|+|||+++|+|||++|..-.+| .+|+|++|+++. ...+.++.++.|
T Consensus 34 LaAA~rLle~gf~~~~IlEa~dRIGGRI~ti~~~d~-~ielGAqwihG~~gNpVY~la~~~g 94 (498)
T KOG0685|consen 34 LAAATRLLENGFIDVLILEASDRIGGRIHTIPFADG-VIELGAQWIHGEEGNPVYELAKEYG 94 (498)
T ss_pred HHHHHHHHHhCCceEEEEEeccccCceEeeEEcCCC-eEeecceeecCCCCChHHHHHHHhC
Confidence 68999998765 599999999999999999876655 899999999994 444999999998
No 26
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=99.08 E-value=3.1e-10 Score=83.35 Aligned_cols=67 Identities=22% Similarity=0.331 Sum_probs=60.0
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCceeee
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENLLMK 68 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l~~~ 68 (87)
|+||++|.++||+|+|+|+++++|||+.+.+. .+-+.|.|.+++..+.+.++.+++++|+.......
T Consensus 20 L~AA~eL~kaG~~v~ilEar~r~GGR~~t~r~-~~~~~d~gG~~i~p~~~~~l~~~k~~gv~~~~fi~ 86 (450)
T COG1231 20 LSAAYELKKAGYQVQILEARDRVGGRSLTARA-GGEYTDLGGQYINPTHDALLAYAKEFGVPLEPFIR 86 (450)
T ss_pred HHHHHHHhhcCcEEEEEeccCCcCceeEEEec-cceeeccCCcccCccchhhhhhHHhcCCCCCceec
Confidence 68999999999999999999999999999985 78899999999988888899999999998654333
No 27
>PLN03000 amine oxidase
Probab=99.02 E-value=8.7e-10 Score=86.50 Aligned_cols=64 Identities=23% Similarity=0.343 Sum_probs=55.0
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccC---CeEEeeeeEEEeCCChH-HHHHHHHcCCCCc
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKR---GNHIEISLHVFFGCYNN-LFRLTKKVGADEN 64 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~---g~~~d~G~~~~~~~~~~-~~~l~~~lg~~~~ 64 (87)
|+||+.|++.|++|+|+|+++++|||+.|.+..+ ++.+|+|++|+++...| +..+++++|+...
T Consensus 197 L~aA~~L~~~G~~V~VlE~~~riGGRi~T~~~~g~~~~~~~DlGas~i~g~~~npl~~L~~qlgl~l~ 264 (881)
T PLN03000 197 LAAARQLMRFGFKVTVLEGRKRPGGRVYTKKMEANRVGAAADLGGSVLTGTLGNPLGIIARQLGSSLY 264 (881)
T ss_pred HHHHHHHHHCCCcEEEEEccCcCCCCcceecccCCCCceEeecCCeEEeCCCccHHHHHHHHcCCcee
Confidence 5799999999999999999999999999987432 67899999999988766 4567899999753
No 28
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.01 E-value=5e-10 Score=78.45 Aligned_cols=62 Identities=21% Similarity=0.328 Sum_probs=55.2
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCC
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADE 63 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~ 63 (87)
|+||+.|+.+|++|+||||+.-+|||+.|.+ .++-.+|+|+++|....+-++++++.+.-+.
T Consensus 14 l~aA~~L~~aG~~vtV~eKg~GvGGRlAtRR-l~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~g 75 (331)
T COG3380 14 LAAAYALREAGREVTVFEKGRGVGGRLATRR-LDGGRFDHGAQYFKPRDELFLRAVEALRDDG 75 (331)
T ss_pred HHHHHHHHhcCcEEEEEEcCCCcccchheec-cCCccccccceeecCCchHHHHHHHHHHhCC
Confidence 5899999999999999999999999999976 5566799999999999888998888876554
No 29
>PLN02529 lysine-specific histone demethylase 1
Probab=99.00 E-value=1.2e-09 Score=84.57 Aligned_cols=64 Identities=27% Similarity=0.332 Sum_probs=55.3
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccC-C--eEEeeeeEEEeCCChH-HHHHHHHcCCCCc
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKR-G--NHIEISLHVFFGCYNN-LFRLTKKVGADEN 64 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~-g--~~~d~G~~~~~~~~~~-~~~l~~~lg~~~~ 64 (87)
|+||..|+++|++|+|||+++++||++.|..... | ..+|+|++|+++...| +..+.+++|+...
T Consensus 173 l~aA~~l~~~g~~v~v~E~~~~~GG~~~t~~~~~~g~~~~~DlGaswi~g~~~npl~~la~~lgl~~~ 240 (738)
T PLN02529 173 LAAARQLLSFGFKVVVLEGRNRPGGRVYTQKMGRKGQFAAVDLGGSVITGIHANPLGVLARQLSIPLH 240 (738)
T ss_pred HHHHHHHHHcCCcEEEEecCccCcCceeeecccCCCCceEEecCCeeccccccchHHHHHHHhCCCcc
Confidence 6899999999999999999999999999986431 3 4899999999987667 7889999998754
No 30
>PLN02676 polyamine oxidase
Probab=98.98 E-value=1.7e-09 Score=80.17 Aligned_cols=64 Identities=23% Similarity=0.295 Sum_probs=55.0
Q ss_pred ChhHHHHhhCCC-cEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeC----CChHHHHHHHHcCCCCce
Q 034688 1 MSTAVELLDQGH-EVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFG----CYNNLFRLTKKVGADENL 65 (87)
Q Consensus 1 L~aA~~L~~~G~-~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~----~~~~~~~l~~~lg~~~~l 65 (87)
|+||++|+++|. +|+|+|+++++||++.+.. ..|..+|.|++|+.. ..+.+.++++++|+....
T Consensus 39 L~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~-~~g~~~d~g~~~~~~~~~~~~~~~~~l~~~~g~~~~~ 107 (487)
T PLN02676 39 ISAAKTLSEAGIEDILILEATDRIGGRMRKAN-FAGVSVELGANWVEGVGGPESNPIWELANKLKLRTFY 107 (487)
T ss_pred HHHHHHHHHcCCCcEEEecCCCCCCCcceeec-CCCeEEecCCEEEEcccCcccChHHHHHHhcCCceee
Confidence 689999999998 6999999999999999875 458999999999974 344588999999998653
No 31
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=98.87 E-value=4e-09 Score=82.39 Aligned_cols=64 Identities=28% Similarity=0.377 Sum_probs=54.5
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccC-C--eEEeeeeEEEeCCChH-HHHHHHHcCCCCc
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKR-G--NHIEISLHVFFGCYNN-LFRLTKKVGADEN 64 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~-g--~~~d~G~~~~~~~~~~-~~~l~~~lg~~~~ 64 (87)
|+||+.|++.|++|+|+|+++++|||+.+....+ + ..+|+|++++++...| +..+++++|+...
T Consensus 251 l~aA~~L~~~g~~v~v~E~~~r~GGr~~t~~~~g~~~~~~~d~Gas~i~g~~~npl~~l~~~lgl~~~ 318 (808)
T PLN02328 251 LVAARQLLSMGFKVVVLEGRARPGGRVKTMKMKGDGVVAAADLGGSVLTGINGNPLGVLARQLGLPLH 318 (808)
T ss_pred HHHHHHHHHCCCcEEEEeccccCCCcccccccCCCCcceeccCCceeecCCCccHHHHHHHHcCCceE
Confidence 6899999999999999999999999999987443 2 3689999999886555 7789999998754
No 32
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=98.82 E-value=7.3e-09 Score=73.92 Aligned_cols=60 Identities=20% Similarity=0.203 Sum_probs=52.4
Q ss_pred hhHHHHhhCCCcEEEEeeCCCcCceEEEEecc-CC-eEEeeeeEEEeCCChHHHHHHHHcCC
Q 034688 2 STAVELLDQGHEVDIYELRSFIGGKVASFVCK-RG-NHIEISLHVFFGCYNNLFRLTKKVGA 61 (87)
Q Consensus 2 ~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~-~g-~~~d~G~~~~~~~~~~~~~l~~~lg~ 61 (87)
..|..|++.|++|.|+|+++++||.|.+..+. .| .++-.|||+|++++..+++++..+--
T Consensus 15 V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~tGIlvHkYGpHIFHT~~~~Vwdyv~~F~e 76 (374)
T COG0562 15 VIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQTGILVHKYGPHIFHTDNKRVWDYVNQFTE 76 (374)
T ss_pred HHHHHHHHcCCEEEEEeccccCCCccccccCCCCCeEEeeccCceeecCchHHHHHHhhhhh
Confidence 46888899999999999999999999998764 35 46899999999999999999987754
No 33
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=98.79 E-value=1.7e-08 Score=73.16 Aligned_cols=60 Identities=18% Similarity=0.126 Sum_probs=51.3
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcC
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVG 60 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg 60 (87)
|++|+.|++.|.+|+|+|+++++||.|.+....+....+.|+|+++...+.+.+++.++.
T Consensus 14 lsaA~~La~~G~~V~viEk~~~iGG~~~~~~~~g~~~~~~G~h~f~t~~~~v~~~~~~~~ 73 (377)
T TIGR00031 14 IVLANILAQLNKRVLVVEKRNHIGGNCYDEVDETILFHQYGPHIFHTNNQYVWDYISPFF 73 (377)
T ss_pred HHHHHHHHhCCCeEEEEecCCCCCCceeeecCCCceEEeecceeEecCcHHHHHHHHhhc
Confidence 579999999999999999999999999986543224469999999999889999988874
No 34
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.70 E-value=1.4e-08 Score=76.87 Aligned_cols=59 Identities=19% Similarity=0.275 Sum_probs=51.1
Q ss_pred ChhHHHHhhC----CCcEEEEeeCCCcCceEEEEec-cCCeEEeeeeEEEeCCChHHHHHHHHcC
Q 034688 1 MSTAVELLDQ----GHEVDIYELRSFIGGKVASFVC-KRGNHIEISLHVFFGCYNNLFRLTKKVG 60 (87)
Q Consensus 1 L~aA~~L~~~----G~~V~v~E~~~~~GG~~~s~~~-~~g~~~d~G~~~~~~~~~~~~~l~~~lg 60 (87)
||||++|++. |++|+|||+++.+||++.++.+ .+|++++.|+. +...+++++++++++.
T Consensus 35 LAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~~~~~~~~Gy~~~~G~~-~~~~y~~l~~ll~~ip 98 (576)
T PRK13977 35 LAAAVFLIRDGQMPGENITILEELDVPGGSLDGAGNPEKGYVARGGRE-MENHFECLWDLFRSIP 98 (576)
T ss_pred HHHHHHHHHccCCCCCcEEEEeCCCCCCCCccCcccccCCEEEECCCC-ccchHHHHHHHHHhcc
Confidence 7899999985 6899999999999999998654 35899999977 5788899999998884
No 35
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.42 E-value=8e-07 Score=65.66 Aligned_cols=82 Identities=18% Similarity=0.206 Sum_probs=65.2
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEEEecc-------------------CCeEEeeeeEEEeCCChHHHHHHHHcCC
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCK-------------------RGNHIEISLHVFFGCYNNLFRLTKKVGA 61 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~-------------------~g~~~d~G~~~~~~~~~~~~~l~~~lg~ 61 (87)
+.+|..|+++|++|+++|+++..||+.+|.... ..+-+|+.++.++... .+.+++...++
T Consensus 17 ~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~~l~~l~~~f~~~~~~~~~~~~~r~~~iDL~Pk~l~~~G-~lv~lL~~s~v 95 (443)
T PTZ00363 17 CILSGLLSVNGKKVLHMDRNPYYGGESASLNLTQLYKKFKPGETPPESLGRNRDWNVDLIPKFIMASG-ELVKILLHTDV 95 (443)
T ss_pred HHHHhhhhhCCCEEEEecCCCCcCcccccccHHHHHHhhcccCCCchhcccccccccccCCeeeecCC-hHHHHHhhcCc
Confidence 467889999999999999999999999987210 1345788899887774 67889999999
Q ss_pred CCceeeeCceeeEEc-cCCeEEE
Q 034688 62 DENLLMKDHTHKFVN-KGGEIGG 83 (87)
Q Consensus 62 ~~~l~~~~~~~~~~~-~~g~~~~ 83 (87)
...+.+..-...+.+ .+|++..
T Consensus 96 ~ryleF~~l~g~~v~~~~g~~~~ 118 (443)
T PTZ00363 96 TRYLEFKVIDGSYVYQKEGKIHK 118 (443)
T ss_pred cceeeeEEeceEEEEecCCeEEE
Confidence 988888766666766 7777655
No 36
>PLN02976 amine oxidase
Probab=98.39 E-value=7.3e-07 Score=73.40 Aligned_cols=64 Identities=22% Similarity=0.311 Sum_probs=52.8
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCC--------hHH-HHHHHHcCCCCc
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCY--------NNL-FRLTKKVGADEN 64 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~--------~~~-~~l~~~lg~~~~ 64 (87)
|+||+.|+++|++|+|||+++++||++.+.+...|+.+|+|++++++.. ++. ..+++++|+...
T Consensus 706 LaAA~~L~~~G~~V~VlEa~~~vGGri~t~~~~~g~pvDlGas~i~G~~~nv~~~r~~np~~~la~qlGl~l~ 778 (1713)
T PLN02976 706 LTAARHLQRQGFSVTVLEARSRIGGRVYTDRSSLSVPVDLGASIITGVEADVATERRPDPSSLICAQLGLELT 778 (1713)
T ss_pred HHHHHHHHHCCCcEEEEeeccCCCCceeeccccCCceeccCcEEEecccccccccccccHHHHHHHhcCCccc
Confidence 5789999999999999999999999999876445889999999998642 243 346899999863
No 37
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=97.76 E-value=2e-05 Score=54.19 Aligned_cols=54 Identities=19% Similarity=0.263 Sum_probs=38.2
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCC
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADE 63 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~ 63 (87)
|+|||+|+++|++|+|||++..+||=+ | .+|..+.. + .-.....++++++|+.-
T Consensus 43 LtAAyyLAk~g~kV~i~E~~ls~GGG~--w--~GGmlf~~----i-Vv~~~a~~iL~e~gI~y 96 (262)
T COG1635 43 LTAAYYLAKAGLKVAIFERKLSFGGGI--W--GGGMLFNK----I-VVREEADEILDEFGIRY 96 (262)
T ss_pred HHHHHHHHhCCceEEEEEeecccCCcc--c--ccccccce----e-eecchHHHHHHHhCCcc
Confidence 789999999999999999999999944 1 11222111 1 12345777888888863
No 38
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.33 E-value=0.00019 Score=57.48 Aligned_cols=29 Identities=24% Similarity=0.315 Sum_probs=27.0
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEE
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVAS 29 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s 29 (87)
|+||+.|+++|++|+|||+.+++||.++.
T Consensus 319 LsaA~~Lar~G~~VtVfE~~~~~GG~l~y 347 (944)
T PRK12779 319 LINAYLLAVEGFPVTVFEAFHDLGGVLRY 347 (944)
T ss_pred HHHHHHHHHCCCeEEEEeeCCCCCceEEc
Confidence 68999999999999999999999998753
No 39
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=97.31 E-value=0.0007 Score=48.65 Aligned_cols=49 Identities=22% Similarity=0.220 Sum_probs=36.1
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCc--CceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCce
Q 034688 1 MSTAVELLDQGHEVDIYELRSFI--GGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENL 65 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~--GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l 65 (87)
|++|..|++.|++|+|+|+++.. .+ +.++..+ .++..++++++|+.+.+
T Consensus 15 l~~A~~L~~~G~~v~v~E~~~~~~~~~-------------~~~a~~l---~~~~~~~l~~lGl~~~l 65 (392)
T PRK08243 15 LLLGQLLHLAGIDSVVLERRSREYVEG-------------RIRAGVL---EQGTVDLLREAGVGERM 65 (392)
T ss_pred HHHHHHHHhcCCCEEEEEcCCcccccc-------------ccceeEE---CHhHHHHHHHcCChHHH
Confidence 57999999999999999999852 11 1122222 36788999999997654
No 40
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=97.24 E-value=0.00015 Score=49.65 Aligned_cols=54 Identities=17% Similarity=0.215 Sum_probs=32.3
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCC
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADE 63 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~ 63 (87)
|+||++|+++|++|.|+|++..+||.+.. +|..+. .+. -.+....+++++|+.-
T Consensus 30 l~aA~~La~~g~kV~v~E~~~~~GGg~~~----Gg~lf~---~iV--Vq~~a~~iL~elgi~y 83 (230)
T PF01946_consen 30 LTAAYYLAKAGLKVAVIERKLSPGGGMWG----GGMLFN---KIV--VQEEADEILDELGIPY 83 (230)
T ss_dssp HHHHHHHHHHTS-EEEEESSSS-BTTTTS-----CTT------EE--EETTTHHHHHHHT---
T ss_pred HHHHHHHHHCCCeEEEEecCCCCCccccc----cccccc---hhh--hhhhHHHHHHhCCcee
Confidence 68999999999999999999999996521 122222 111 1123556778887753
No 41
>PRK06184 hypothetical protein; Provisional
Probab=97.19 E-value=0.0011 Score=49.27 Aligned_cols=49 Identities=14% Similarity=0.120 Sum_probs=35.9
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCce
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENL 65 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l 65 (87)
|++|..|+++|++|+|+|+++.+.-..+ +. .+ .++.+++++++|+.+.+
T Consensus 16 l~~A~~La~~Gi~v~viE~~~~~~~~~r------a~-------~l---~~~~~e~l~~lGl~~~l 64 (502)
T PRK06184 16 LTLAIELARRGVSFRLIEKAPEPFPGSR------GK-------GI---QPRTQEVFDDLGVLDRV 64 (502)
T ss_pred HHHHHHHHHCCCcEEEEeCCCCCCcCcc------ce-------ee---cHHHHHHHHHcCcHHHH
Confidence 6899999999999999999886632110 00 01 37889999999986543
No 42
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=97.18 E-value=0.00056 Score=48.30 Aligned_cols=54 Identities=17% Similarity=0.251 Sum_probs=36.2
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCce
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENL 65 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l 65 (87)
|++|+.|+++|++|+|||+++.++-+.. ++ +.... .-.++..++++++|+.+.+
T Consensus 12 l~~A~~L~~~G~~v~v~Er~~~~~~~~~------~~--~~~~~---~l~~~~~~~l~~lGl~~~~ 65 (385)
T TIGR01988 12 LALALALARSGLKIALIEATPAEAAATP------GF--DNRVS---ALSAASIRLLEKLGVWDKI 65 (385)
T ss_pred HHHHHHHhcCCCEEEEEeCCCccccCCC------CC--Cccee---ecCHHHHHHHHHCCchhhh
Confidence 5899999999999999999987652110 00 10011 1236778889999986554
No 43
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.18 E-value=0.00034 Score=52.15 Aligned_cols=29 Identities=28% Similarity=0.501 Sum_probs=27.4
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEE
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVAS 29 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s 29 (87)
|+||+.|+++|++|+|||+.+.+||++..
T Consensus 136 l~~a~~L~~~G~~Vtv~e~~~~~GGll~y 164 (457)
T COG0493 136 LAAADDLSRAGHDVTVFERVALDGGLLLY 164 (457)
T ss_pred hhhHHHHHhCCCeEEEeCCcCCCceeEEe
Confidence 68999999999999999999999999865
No 44
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.17 E-value=0.00059 Score=48.98 Aligned_cols=51 Identities=18% Similarity=0.225 Sum_probs=34.3
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCce
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENL 65 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l 65 (87)
|++|..|+++|++|+|+|+++.+.-. ..|..+ .-.++..++++++|+.+.+
T Consensus 31 l~~A~~L~~~G~~v~v~E~~~~~~~~------~~g~~~--------~l~~~~~~~L~~lGl~~~l 81 (415)
T PRK07364 31 LTLAAALKDSGLRIALIEAQPAEAAA------AKGQAY--------ALSLLSARIFEGIGVWEKI 81 (415)
T ss_pred HHHHHHHhcCCCEEEEEecCCccccC------CCCcEE--------EechHHHHHHHHCChhhhh
Confidence 58999999999999999999875310 001000 1125677888888886543
No 45
>PRK06753 hypothetical protein; Provisional
Probab=97.17 E-value=0.00098 Score=47.22 Aligned_cols=48 Identities=23% Similarity=0.393 Sum_probs=34.6
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCc
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADEN 64 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~ 64 (87)
|++|..|+++|++|+|||+++.+.-. |. |. .-.++.++.++++|+.+.
T Consensus 13 l~~A~~L~~~g~~v~v~E~~~~~~~~--------g~----gi----~l~~~~~~~L~~~gl~~~ 60 (373)
T PRK06753 13 LTAAALLQEQGHEVKVFEKNESVKEV--------GA----GI----GIGDNVIKKLGNHDLAKG 60 (373)
T ss_pred HHHHHHHHhCCCcEEEEecCCccccc--------cc----ce----eeChHHHHHHHhcChHHH
Confidence 58999999999999999999876421 11 11 113677888888887543
No 46
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=97.15 E-value=0.0017 Score=46.80 Aligned_cols=51 Identities=22% Similarity=0.113 Sum_probs=36.3
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCce
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENL 65 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l 65 (87)
|++|..|+++|++|+|+|+++..-- . -+.|+..+ .++.+++++++|+.+.+
T Consensus 15 l~~A~~L~~~G~~v~viE~~~~~~~-------~----~~~~a~~l---~~~~~~~L~~lGl~~~l 65 (390)
T TIGR02360 15 LLLGQLLHKAGIDNVILERQSRDYV-------L----GRIRAGVL---EQGTVDLLREAGVDERM 65 (390)
T ss_pred HHHHHHHHHCCCCEEEEECCCCccc-------C----CceeEeeE---CHHHHHHHHHCCChHHH
Confidence 5899999999999999999985210 0 02233322 36788999999987654
No 47
>PRK08163 salicylate hydroxylase; Provisional
Probab=97.10 E-value=0.0019 Score=46.10 Aligned_cols=48 Identities=27% Similarity=0.373 Sum_probs=35.4
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCc
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADEN 64 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~ 64 (87)
|++|..|+++|++|+|||+++.++-. |. |. .-.++..++++++|+.+.
T Consensus 17 l~~A~~L~~~g~~v~v~Er~~~~~~~--------g~----gi----~l~~~~~~~l~~lg~~~~ 64 (396)
T PRK08163 17 LAAALALARQGIKVKLLEQAAEIGEI--------GA----GI----QLGPNAFSALDALGVGEA 64 (396)
T ss_pred HHHHHHHHhCCCcEEEEeeCcccccc--------cc----ee----eeCchHHHHHHHcCChHH
Confidence 58999999999999999999865421 11 11 123678889999998654
No 48
>PRK07588 hypothetical protein; Provisional
Probab=97.02 E-value=0.0013 Score=47.02 Aligned_cols=48 Identities=19% Similarity=0.266 Sum_probs=32.5
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCc
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADEN 64 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~ 64 (87)
|++|..|+++|++|+|+|+++... ..|..+ .-.++.+++++++|+.+.
T Consensus 13 l~~A~~L~~~G~~v~v~E~~~~~~--------~~g~~~--------~l~~~~~~~l~~lGl~~~ 60 (391)
T PRK07588 13 PTLAYWLRRYGHEPTLIERAPELR--------TGGYMV--------DFWGVGYEVAKRMGITDQ 60 (391)
T ss_pred HHHHHHHHHCCCceEEEeCCCCcc--------CCCeEE--------eccCcHHHHHHHcCCHHH
Confidence 589999999999999999986531 112111 112455678888887543
No 49
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=97.02 E-value=0.0027 Score=47.66 Aligned_cols=48 Identities=15% Similarity=0.251 Sum_probs=34.7
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCc
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADEN 64 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~ 64 (87)
|++|..|++.|++|+|+|+++.+....+.. .-.++.+++++++|+.+.
T Consensus 36 l~lA~~L~~~G~~v~viE~~~~~~~~~ra~----------------~l~~~~~~~l~~lGl~~~ 83 (547)
T PRK08132 36 LALAIDLAQQGVPVVLLDDDDTLSTGSRAI----------------CFAKRSLEIFDRLGCGER 83 (547)
T ss_pred HHHHHHHHhCCCcEEEEeCCCCCCCCCeEE----------------EEcHHHHHHHHHcCCcHH
Confidence 589999999999999999998653211111 112567888999998754
No 50
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=96.95 E-value=0.00072 Score=50.25 Aligned_cols=28 Identities=32% Similarity=0.499 Sum_probs=26.3
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVA 28 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~ 28 (87)
|+||.+|+++|++|+|||+++.+||...
T Consensus 23 L~aA~~l~~~G~~v~vfE~~~~vGG~W~ 50 (461)
T PLN02172 23 LVAARELRREGHTVVVFEREKQVGGLWV 50 (461)
T ss_pred HHHHHHHHhcCCeEEEEecCCCCcceee
Confidence 6899999999999999999999999874
No 51
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=96.93 E-value=0.00073 Score=54.61 Aligned_cols=30 Identities=30% Similarity=0.468 Sum_probs=27.6
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEEE
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVASF 30 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~ 30 (87)
|+||+.|++.|++|+|||+++.+||.++..
T Consensus 550 LSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~ 579 (1012)
T TIGR03315 550 LSAGYFLARAGHPVTVFEKKEKPGGVVKNI 579 (1012)
T ss_pred HHHHHHHHHCCCeEEEEecccccCceeeec
Confidence 689999999999999999999999998643
No 52
>PLN02985 squalene monooxygenase
Probab=96.92 E-value=0.003 Score=47.57 Aligned_cols=49 Identities=16% Similarity=0.085 Sum_probs=34.0
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCce
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENL 65 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l 65 (87)
|++|..|+++|++|+|+|+.+....+. . | ..-.++-.+.++++|+.+.+
T Consensus 56 lalA~aLa~~G~~V~vlEr~~~~~~~~----------~--g----~~L~p~g~~~L~~LGl~d~l 104 (514)
T PLN02985 56 SALAYALAKDGRRVHVIERDLREPERM----------M--G----EFMQPGGRFMLSKLGLEDCL 104 (514)
T ss_pred HHHHHHHHHcCCeEEEEECcCCCCccc----------c--c----cccCchHHHHHHHcCCcchh
Confidence 578999999999999999975422110 0 1 01235678899999987654
No 53
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=96.91 E-value=0.0011 Score=47.90 Aligned_cols=48 Identities=21% Similarity=0.306 Sum_probs=34.5
Q ss_pred ChhHHHHhhCC-CcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCc
Q 034688 1 MSTAVELLDQG-HEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADEN 64 (87)
Q Consensus 1 L~aA~~L~~~G-~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~ 64 (87)
|++|..|+++| ++|+|||+++.++.. |.-+. -.+|..+.++++|+.+.
T Consensus 13 la~A~~L~~~g~~~v~v~Er~~~~~~~--------G~gi~--------l~~~~~~~L~~lg~~~~ 61 (414)
T TIGR03219 13 VALALNLCKHSHLNVQLFEAAPAFGEV--------GAGVS--------FGANAVRAIVGLGLGEA 61 (414)
T ss_pred HHHHHHHHhcCCCCEEEEecCCcCCCC--------cccee--------eCccHHHHHHHcCChhH
Confidence 68999999998 599999998876531 11111 13678888888888643
No 54
>PRK07236 hypothetical protein; Provisional
Probab=96.86 E-value=0.0058 Score=43.77 Aligned_cols=49 Identities=22% Similarity=0.255 Sum_probs=35.0
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCc
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADEN 64 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~ 64 (87)
|++|..|+++|++|+|||+++..- . ..|. |.. -.++..++++++|+.+.
T Consensus 19 l~~A~~L~~~G~~v~v~E~~~~~~------~-~~g~----gi~----l~~~~~~~l~~lg~~~~ 67 (386)
T PRK07236 19 LFAALLLRRAGWDVDVFERSPTEL------D-GRGA----GIV----LQPELLRALAEAGVALP 67 (386)
T ss_pred HHHHHHHHhCCCCEEEEecCCCCc------C-CCCc----eeE----eCHHHHHHHHHcCCCcc
Confidence 689999999999999999987531 0 1111 111 13789999999998754
No 55
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=96.84 E-value=0.00091 Score=43.37 Aligned_cols=29 Identities=28% Similarity=0.401 Sum_probs=24.8
Q ss_pred ChhHHHHhhCCCc-EEEEeeCCCcCceEEE
Q 034688 1 MSTAVELLDQGHE-VDIYELRSFIGGKVAS 29 (87)
Q Consensus 1 L~aA~~L~~~G~~-V~v~E~~~~~GG~~~s 29 (87)
|++|..|.++|.+ |+|+|+++.+||....
T Consensus 10 l~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~ 39 (203)
T PF13738_consen 10 LAAAAHLLERGIDPVVVLERNDRPGGVWRR 39 (203)
T ss_dssp HHHHHHHHHTT---EEEEESSSSSTTHHHC
T ss_pred HHHHHHHHhCCCCcEEEEeCCCCCCCeeEE
Confidence 5899999999999 9999999999998764
No 56
>PRK09126 hypothetical protein; Provisional
Probab=96.83 E-value=0.0015 Score=46.51 Aligned_cols=54 Identities=15% Similarity=0.132 Sum_probs=35.6
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCce
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENL 65 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l 65 (87)
|++|..|+++|++|+|+|+++.+.-. +.. .. |.. ..-.++..++++++|+.+.+
T Consensus 16 l~~A~~L~~~G~~v~v~E~~~~~~~~--~~~-~~------g~~--i~l~~~~~~~L~~lGl~~~~ 69 (392)
T PRK09126 16 LSFARSLAGSGLKVTLIERQPLAALA--DPA-FD------GRE--IALTHASREILQRLGAWDRI 69 (392)
T ss_pred HHHHHHHHhCCCcEEEEeCCCccccc--CCC-Cc------hhH--HHhhHHHHHHHHHCCChhhh
Confidence 58999999999999999999875310 000 00 110 01236788899999986543
No 57
>PRK12831 putative oxidoreductase; Provisional
Probab=96.81 E-value=0.0012 Score=49.06 Aligned_cols=28 Identities=29% Similarity=0.411 Sum_probs=26.2
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVA 28 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~ 28 (87)
|+||+.|++.|++|+|+|+.+.+||.+.
T Consensus 153 l~aA~~l~~~G~~V~v~e~~~~~GG~l~ 180 (464)
T PRK12831 153 LTCAGDLAKMGYDVTIFEALHEPGGVLV 180 (464)
T ss_pred HHHHHHHHhCCCeEEEEecCCCCCCeee
Confidence 6899999999999999999999999885
No 58
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=96.79 E-value=0.0013 Score=45.34 Aligned_cols=48 Identities=23% Similarity=0.251 Sum_probs=35.4
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCc
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADEN 64 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~ 64 (87)
|+||..|+++|++|+|+|+++.+--..+ | ..+ .++.+++++++|+.+.
T Consensus 14 l~~A~~L~~~G~~v~i~E~~~~~~~~~~------------~-~~l---~~~~~~~l~~lgl~~~ 61 (356)
T PF01494_consen 14 LAAALALARAGIDVTIIERRPDPRPKGR------------G-IGL---SPNSLRILQRLGLLDE 61 (356)
T ss_dssp HHHHHHHHHTTCEEEEEESSSSCCCSSS------------S-EEE---EHHHHHHHHHTTEHHH
T ss_pred HHHHHHHHhcccccccchhccccccccc------------c-ccc---ccccccccccccchhh
Confidence 5899999999999999999887643211 1 111 2678889999998764
No 59
>PRK08244 hypothetical protein; Provisional
Probab=96.75 E-value=0.0019 Score=47.76 Aligned_cols=46 Identities=17% Similarity=0.019 Sum_probs=34.0
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcC--ceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCc
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIG--GKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADEN 64 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~G--G~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~ 64 (87)
|++|..|++.|++|+|+|+++.+. |+.. .-.++.+++++++|+.+.
T Consensus 15 l~lA~~L~~~G~~v~viEr~~~~~~~~ra~------------------~l~~~~~e~l~~lGl~~~ 62 (493)
T PRK08244 15 LMLASELALAGVKTCVIERLKETVPYSKAL------------------TLHPRTLEILDMRGLLER 62 (493)
T ss_pred HHHHHHHHHCCCcEEEEecCCCCCCCccee------------------EecHHHHHHHHhcCcHHH
Confidence 589999999999999999987642 2111 123678888888888654
No 60
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=96.75 E-value=0.0031 Score=45.17 Aligned_cols=55 Identities=20% Similarity=0.241 Sum_probs=34.9
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCce
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENL 65 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l 65 (87)
|++|..|+++|++|+|+|+++.. ++. ..+ ..+.+.. .-.++.+++++++|+.+.+
T Consensus 16 l~~A~~L~~~G~~v~l~E~~~~~-----~~~-~~~-~~~~r~~---~l~~~~~~~L~~lG~~~~~ 70 (384)
T PRK08849 16 AATALGFAKQGRSVAVIEGGEPK-----AFE-PSQ-PMDIRVS---AISQTSVDLLESLGAWSSI 70 (384)
T ss_pred HHHHHHHHhCCCcEEEEcCCCcc-----cCC-CCC-CCCccEE---EecHHHHHHHHHCCCchhh
Confidence 58999999999999999987521 000 000 0111111 1237888999999987654
No 61
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=96.73 E-value=0.00098 Score=50.49 Aligned_cols=30 Identities=37% Similarity=0.605 Sum_probs=27.8
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEEE
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVASF 30 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~ 30 (87)
|+||..|++.|++|.++|+++.+||++..+
T Consensus 137 itAAl~La~~G~~v~LVEKepsiGGrmak~ 166 (622)
T COG1148 137 ITAALELADMGFKVYLVEKEPSIGGRMAKL 166 (622)
T ss_pred HHHHHHHHHcCCeEEEEecCCcccccHHhh
Confidence 579999999999999999999999998664
No 62
>PRK05868 hypothetical protein; Validated
Probab=96.73 E-value=0.0018 Score=46.43 Aligned_cols=48 Identities=17% Similarity=0.161 Sum_probs=34.2
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCc
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADEN 64 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~ 64 (87)
|++|..|+++|++|+|+|+++.+.- .|..++ ..++.+++++++|+.+.
T Consensus 14 l~~A~~L~~~G~~v~viE~~~~~~~--------~g~~i~--------~~~~a~~~L~~lGl~~~ 61 (372)
T PRK05868 14 TAAAYWLGRHGYSVTMVERHPGLRP--------GGQAID--------VRGPALDVLERMGLLAA 61 (372)
T ss_pred HHHHHHHHhCCCCEEEEcCCCCCCC--------Cceeee--------eCchHHHHHHhcCCHHH
Confidence 5789999999999999999877531 121122 12566788899987643
No 63
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=96.73 E-value=0.0012 Score=45.51 Aligned_cols=27 Identities=26% Similarity=0.317 Sum_probs=24.9
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceE
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKV 27 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~ 27 (87)
|+||+.|+++|++|+|+|+++.+||.+
T Consensus 34 L~aA~~la~~G~~V~vlEk~~~~Ggg~ 60 (254)
T TIGR00292 34 LTAAYYLAKNGLKVCVLERSLAFGGGS 60 (254)
T ss_pred HHHHHHHHHCCCcEEEEecCCCCCccc
Confidence 589999999999999999999998764
No 64
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=96.73 E-value=0.0026 Score=45.16 Aligned_cols=53 Identities=19% Similarity=0.193 Sum_probs=34.4
Q ss_pred ChhHHHHhhCC-CcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCce
Q 034688 1 MSTAVELLDQG-HEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENL 65 (87)
Q Consensus 1 L~aA~~L~~~G-~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l 65 (87)
|++|..|+++| ++|+|+|+.+.+.-. . + .+.... .-.++..+.++++|+.+.+
T Consensus 12 l~~A~~L~~~G~~~v~v~E~~~~~~~~--~-----~--~~~~~~---~l~~~~~~~l~~lgl~~~~ 65 (382)
T TIGR01984 12 LSLALALSRLGKIKIALIEANSPSAAQ--P-----G--FDARSL---ALSYGSKQILEKLGLWPKL 65 (382)
T ss_pred HHHHHHHhcCCCceEEEEeCCCccccC--C-----C--CCCeeE---eccHHHHHHHHHCCChhhh
Confidence 58999999999 999999998764311 0 0 000001 1125667888999886544
No 65
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=96.71 E-value=0.0072 Score=45.38 Aligned_cols=49 Identities=16% Similarity=0.184 Sum_probs=36.5
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCce
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENL 65 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l 65 (87)
|++|..|++.|++|+|+|+++.+....+.+ .-.++.+++++++|+.+.+
T Consensus 23 l~lA~~L~~~G~~v~v~Er~~~~~~~~ra~----------------~l~~~~~~~L~~lGl~~~l 71 (538)
T PRK06183 23 LTLANLLGQYGVRVLVLERWPTLYDLPRAV----------------GIDDEALRVLQAIGLADEV 71 (538)
T ss_pred HHHHHHHHHCCCcEEEEecCCCCCCCCcee----------------eeCHHHHHHHHHcCChhHH
Confidence 578999999999999999998765322111 1136788999999987653
No 66
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=96.68 E-value=0.005 Score=44.38 Aligned_cols=51 Identities=12% Similarity=0.128 Sum_probs=34.4
Q ss_pred ChhHHHHhhCCCcEEEEeeC-CCc--CceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCce
Q 034688 1 MSTAVELLDQGHEVDIYELR-SFI--GGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENL 65 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~-~~~--GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l 65 (87)
|++|..|++.|++|+|+|++ +.. +.. . + ... ..-.++..++++++|+.+.+
T Consensus 17 l~~A~~L~~~G~~v~viE~~~~~~~~~~~------~-----~--~r~-~~l~~~~~~~L~~lGl~~~l 70 (405)
T PRK08850 17 LALAAALKESDLRIAVIEGQLPEEALNEL------P-----D--VRV-SALSRSSEHILRNLGAWQGI 70 (405)
T ss_pred HHHHHHHHhCCCEEEEEcCCCCcccccCC------C-----C--cce-ecccHHHHHHHHhCCchhhh
Confidence 58999999999999999986 221 110 0 0 000 11236899999999987654
No 67
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=96.67 E-value=0.0039 Score=44.63 Aligned_cols=54 Identities=20% Similarity=0.185 Sum_probs=35.6
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCce
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENL 65 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l 65 (87)
|++|+.|+++|++|+|+|+++.+.-.. . + .+... ..-.++..++++++|+.+.+
T Consensus 19 l~~A~~La~~G~~v~liE~~~~~~~~~-----~-~----~~~r~-~~l~~~~~~~l~~lGl~~~~ 72 (392)
T PRK08773 19 AACALALADAGLSVALVEGREPPRWQA-----D-Q----PDLRV-YAFAADNAALLDRLGVWPAV 72 (392)
T ss_pred HHHHHHHhcCCCEEEEEeCCCCccccc-----C-C----CCCEE-EEecHHHHHHHHHCCchhhh
Confidence 589999999999999999987543110 0 0 01111 11236678889999987654
No 68
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.65 E-value=0.0068 Score=43.34 Aligned_cols=52 Identities=17% Similarity=0.134 Sum_probs=33.7
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCc
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADEN 64 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~ 64 (87)
|++|..|++.|++|+|+|+.+...... . . + +. ...-.++..++++++|+.+.
T Consensus 14 l~~A~~L~~~G~~v~l~E~~~~~~~~~---~-~-----~-~r--~~~l~~~~~~~L~~lGl~~~ 65 (374)
T PRK06617 14 MLTALSFAQKGIKTTIFESKSVKSPEF---F-K-----D-IR--TTALTPHSKNFLFSIDIWEE 65 (374)
T ss_pred HHHHHHHHcCCCeEEEecCCCCCCCcc---C-c-----C-ce--EEEeCHHHHHHHHHCCcHHH
Confidence 589999999999999999875321100 0 0 1 10 01123678889999998543
No 69
>PRK06847 hypothetical protein; Provisional
Probab=96.64 E-value=0.0046 Score=43.78 Aligned_cols=47 Identities=23% Similarity=0.317 Sum_probs=32.8
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCC
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADE 63 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~ 63 (87)
|++|..|++.|++|+|||+++.+... |. |. .-.++..+.++++|+.+
T Consensus 17 l~~A~~L~~~g~~v~v~E~~~~~~~~--------g~----g~----~l~~~~~~~l~~~gl~~ 63 (375)
T PRK06847 17 LSAAIALRRAGIAVDLVEIDPEWRVY--------GA----GI----TLQGNALRALRELGVLD 63 (375)
T ss_pred HHHHHHHHhCCCCEEEEecCCCCccC--------Cc----ee----eecHHHHHHHHHcCCHH
Confidence 57999999999999999998764221 11 11 11256778888888754
No 70
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=96.63 E-value=0.0015 Score=52.69 Aligned_cols=29 Identities=28% Similarity=0.579 Sum_probs=26.8
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEE
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVAS 29 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s 29 (87)
|+||++|++.|++|+|||+.+.+||.++.
T Consensus 443 LsaA~~La~~G~~VtV~E~~~~~GG~l~~ 471 (1006)
T PRK12775 443 LAAAADLVKYGVDVTVYEALHVVGGVLQY 471 (1006)
T ss_pred HHHHHHHHHcCCcEEEEecCCCCcceeec
Confidence 68999999999999999999999998754
No 71
>PRK07538 hypothetical protein; Provisional
Probab=96.63 E-value=0.002 Score=46.56 Aligned_cols=48 Identities=19% Similarity=0.303 Sum_probs=34.0
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCc
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADEN 64 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~ 64 (87)
|++|..|+++|++|+|||+++.+.- .| .|.. -.++.++.++++|+.+.
T Consensus 13 l~~A~~L~~~G~~v~v~E~~~~~~~--------~g----~gi~----l~p~~~~~L~~lgl~~~ 60 (413)
T PRK07538 13 LTLALTLHQRGIEVVVFEAAPELRP--------LG----VGIN----LLPHAVRELAELGLLDA 60 (413)
T ss_pred HHHHHHHHhCCCcEEEEEcCCcccc--------cC----ccee----eCchHHHHHHHCCCHHH
Confidence 5899999999999999999876431 01 1111 13677888888887654
No 72
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.63 E-value=0.0018 Score=49.83 Aligned_cols=29 Identities=28% Similarity=0.408 Sum_probs=26.7
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEE
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVAS 29 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s 29 (87)
|+||+.|++.|++|+|||+.+.+||.++.
T Consensus 340 LsaA~~L~~~G~~V~V~E~~~~~GG~l~~ 368 (654)
T PRK12769 340 LACADVLARNGVAVTVYDRHPEIGGLLTF 368 (654)
T ss_pred HHHHHHHHHCCCeEEEEecCCCCCceeee
Confidence 68999999999999999999999998754
No 73
>PRK07045 putative monooxygenase; Reviewed
Probab=96.62 E-value=0.0044 Score=44.28 Aligned_cols=49 Identities=14% Similarity=0.133 Sum_probs=34.4
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCce
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENL 65 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l 65 (87)
|+||..|+++|++|+|+|+++.+- .. .|... -.++..++++++|+.+.+
T Consensus 18 l~~A~~L~~~G~~v~v~E~~~~~~-------~~------~~~~~---l~~~~~~~L~~lGl~~~~ 66 (388)
T PRK07045 18 VALAHLLGARGHSVTVVERAARNR-------AQ------NGADL---LKPSGIGVVRAMGLLDDV 66 (388)
T ss_pred HHHHHHHHhcCCcEEEEeCCCccc-------CC------Ccccc---cCccHHHHHHHcCCHHHH
Confidence 589999999999999999998651 00 01111 235667788888886653
No 74
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=96.61 E-value=0.0015 Score=47.25 Aligned_cols=29 Identities=31% Similarity=0.237 Sum_probs=26.8
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEE
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVAS 29 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s 29 (87)
++||+.|+++|++|+|+|+++.+|-+..+
T Consensus 16 s~aA~~la~~G~~VlvlEk~~~~G~k~~~ 44 (396)
T COG0644 16 SSAARRLAKAGLDVLVLEKGSEPGAKPCC 44 (396)
T ss_pred HHHHHHHHHcCCeEEEEecCCCCCCCccc
Confidence 47999999999999999999999997766
No 75
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=96.61 E-value=0.0014 Score=47.96 Aligned_cols=29 Identities=21% Similarity=0.303 Sum_probs=26.2
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEE
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVAS 29 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s 29 (87)
++||..|++.|++|+|+|+.+.+||.|..
T Consensus 18 ~~aA~~la~~G~~v~liE~~~~~GG~~~~ 46 (461)
T PRK05249 18 EGAAMQAAKLGKRVAVIERYRNVGGGCTH 46 (461)
T ss_pred HHHHHHHHhCCCEEEEEeccccccccccc
Confidence 57999999999999999999999998743
No 76
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=96.61 E-value=0.0017 Score=44.85 Aligned_cols=27 Identities=26% Similarity=0.466 Sum_probs=24.8
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceE
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKV 27 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~ 27 (87)
|+||++|+++|++|+|+|+.+.+||.+
T Consensus 38 l~AA~~la~~G~~V~liEk~~~~Ggg~ 64 (257)
T PRK04176 38 LTAAYYLAKAGLKVAVFERKLSFGGGM 64 (257)
T ss_pred HHHHHHHHhCCCeEEEEecCCCCCCcc
Confidence 579999999999999999999999865
No 77
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=96.60 E-value=0.0016 Score=52.68 Aligned_cols=29 Identities=31% Similarity=0.477 Sum_probs=27.1
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEE
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVAS 29 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s 29 (87)
|+||+.|+++|++|+|+|+++.+||.++.
T Consensus 552 LsAA~~Lar~G~~VtV~Ek~~~~GG~lr~ 580 (1019)
T PRK09853 552 LAAAYFLARAGHPVTVFEREENAGGVVKN 580 (1019)
T ss_pred HHHHHHHHHcCCeEEEEecccccCcceee
Confidence 68999999999999999999999998865
No 78
>PLN02852 ferredoxin-NADP+ reductase
Probab=96.60 E-value=0.002 Score=48.46 Aligned_cols=30 Identities=40% Similarity=0.266 Sum_probs=26.8
Q ss_pred ChhHHHHhh--CCCcEEEEeeCCCcCceEEEE
Q 034688 1 MSTAVELLD--QGHEVDIYELRSFIGGKVASF 30 (87)
Q Consensus 1 L~aA~~L~~--~G~~V~v~E~~~~~GG~~~s~ 30 (87)
|+||+.|++ .|++|+|||+.+.+||.++.-
T Consensus 39 l~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~g 70 (491)
T PLN02852 39 FYTADKLLKAHDGARVDIIERLPTPFGLVRSG 70 (491)
T ss_pred HHHHHHHHhhCCCCeEEEEecCCCCcceEeec
Confidence 579999987 799999999999999988753
No 79
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=96.59 E-value=0.0036 Score=44.98 Aligned_cols=57 Identities=14% Similarity=0.088 Sum_probs=36.6
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCce
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENL 65 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l 65 (87)
|++|+.|+++|++|+|+|+++...+.... .......+. .-.++..++++++|+.+.+
T Consensus 15 l~~A~~L~~~G~~v~viE~~~~~~~~~~~----~~~~~~r~~----~l~~~~~~~L~~lGl~~~l 71 (405)
T PRK05714 15 SALALALQGSGLEVLLLDGGPLSVKPFDP----QAPFEPRVS----ALSAASQRILERLGAWDGI 71 (405)
T ss_pred HHHHHHHhcCCCEEEEEcCCCcccccccc----CCCCCccch----hhhHHHHHHHHHCChhhhh
Confidence 58999999999999999998753321110 000000111 2347889999999986654
No 80
>PRK06126 hypothetical protein; Provisional
Probab=96.59 E-value=0.0031 Score=47.21 Aligned_cols=49 Identities=10% Similarity=0.099 Sum_probs=34.8
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCce
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENL 65 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l 65 (87)
|++|..|+++|++|+|+|+++.+.- .+. + ..-.++.+++++++|+.+.+
T Consensus 20 L~~Al~La~~G~~v~viEr~~~~~~--------~~r-----a---~~l~~r~~e~L~~lGl~~~l 68 (545)
T PRK06126 20 LALALDLGRRGVDSILVERKDGTAF--------NPK-----A---NTTSARSMEHFRRLGIADEV 68 (545)
T ss_pred HHHHHHHHHCCCcEEEEeCCCCCCC--------CCc-----c---ccCCHHHHHHHHhcChHHHH
Confidence 6899999999999999998864321 010 0 12346788899999986543
No 81
>PRK08013 oxidoreductase; Provisional
Probab=96.58 E-value=0.0039 Score=44.94 Aligned_cols=55 Identities=15% Similarity=0.137 Sum_probs=36.5
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCce
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENL 65 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l 65 (87)
|++|..|+++|++|+|+|+++.+.-.. |...+.-.. .-.++.+++++++|+.+.+
T Consensus 16 l~~A~~La~~G~~v~viE~~~~~~~~~-------g~~~~~r~~---~l~~~s~~~L~~lGl~~~~ 70 (400)
T PRK08013 16 LAVACGLQGSGLRVAVLEQRVPEPLAA-------DAPPALRVS---AINAASEKLLTRLGVWQDI 70 (400)
T ss_pred HHHHHHHhhCCCEEEEEeCCCCccccc-------CCCCCceee---ecchhHHHHHHHcCCchhh
Confidence 579999999999999999988643100 111111111 1246788899999987654
No 82
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=96.53 E-value=0.002 Score=46.42 Aligned_cols=24 Identities=21% Similarity=0.494 Sum_probs=21.6
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcC
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIG 24 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~G 24 (87)
+++|++|+++|++|+|+||++.+|
T Consensus 14 ~~~A~~La~~g~~V~vle~~~~~~ 37 (410)
T PRK12409 14 VTTAYALAQRGYQVTVFDRHRYAA 37 (410)
T ss_pred HHHHHHHHHCCCeEEEEeCCCCCC
Confidence 579999999999999999998654
No 83
>PRK06475 salicylate hydroxylase; Provisional
Probab=96.53 E-value=0.0029 Score=45.58 Aligned_cols=49 Identities=29% Similarity=0.392 Sum_probs=35.3
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCce
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENL 65 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l 65 (87)
|++|..|+++|++|+|+|+.+.+.- .|. |. .-.++..++++++|+.+.+
T Consensus 15 l~~A~~L~~~G~~V~i~E~~~~~~~--------~g~----gi----~l~~~~~~~L~~~Gl~~~l 63 (400)
T PRK06475 15 LSAALELAARGWAVTIIEKAQELSE--------VGA----GL----QLAPNAMRHLERLGVADRL 63 (400)
T ss_pred HHHHHHHHhCCCcEEEEecCCccCc--------CCc----cc----eeChhHHHHHHHCCChHHH
Confidence 5899999999999999999875431 111 11 1136888999999986554
No 84
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.52 E-value=0.0023 Score=49.18 Aligned_cols=29 Identities=28% Similarity=0.431 Sum_probs=26.6
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEE
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVAS 29 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s 29 (87)
|+||+.|++.|++|+|||+.+.+||..+.
T Consensus 323 l~aA~~L~~~G~~Vtv~e~~~~~GG~l~~ 351 (639)
T PRK12809 323 LGCADILARAGVQVDVFDRHPEIGGMLTF 351 (639)
T ss_pred HHHHHHHHHcCCcEEEEeCCCCCCCeeec
Confidence 68999999999999999999999998753
No 85
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.52 E-value=0.0019 Score=48.13 Aligned_cols=29 Identities=41% Similarity=0.578 Sum_probs=26.6
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEE
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVAS 29 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s 29 (87)
|+||..|.++|++|+||||++.+||.-.-
T Consensus 19 L~~ar~l~~~g~~v~vfEr~~~iGGlW~y 47 (448)
T KOG1399|consen 19 LAAARELLREGHEVVVFERTDDIGGLWKY 47 (448)
T ss_pred HHHHHHHHHCCCCceEEEecCCccceEee
Confidence 78999999999999999999999997643
No 86
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=96.50 E-value=0.002 Score=44.45 Aligned_cols=24 Identities=46% Similarity=0.588 Sum_probs=21.1
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCc
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGG 25 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG 25 (87)
+++|++|++.|++|+|+|+. .+++
T Consensus 12 ~~~A~~La~~G~~V~l~e~~-~~~~ 35 (358)
T PF01266_consen 12 LSTAYELARRGHSVTLLERG-DIGS 35 (358)
T ss_dssp HHHHHHHHHTTSEEEEEESS-STTS
T ss_pred HHHHHHHHHCCCeEEEEeec-cccc
Confidence 57999999999999999999 5544
No 87
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=96.50 E-value=0.0026 Score=46.89 Aligned_cols=28 Identities=36% Similarity=0.542 Sum_probs=26.0
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVA 28 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~ 28 (87)
|+||+.|++.|++|+|+|+++.+||.+.
T Consensus 146 l~aA~~l~~~G~~V~vie~~~~~GG~l~ 173 (449)
T TIGR01316 146 LACASELAKAGHSVTVFEALHKPGGVVT 173 (449)
T ss_pred HHHHHHHHHCCCcEEEEecCCCCCcEee
Confidence 5899999999999999999999999774
No 88
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=96.50 E-value=0.012 Score=42.33 Aligned_cols=45 Identities=22% Similarity=0.274 Sum_probs=32.4
Q ss_pred ChhHHHHhhCCCcEEEEeeCC-CcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCC
Q 034688 1 MSTAVELLDQGHEVDIYELRS-FIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGA 61 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~-~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~ 61 (87)
|++|..|+++|++|+|+|+++ ..-. .+ ....-.++.+++++++|+
T Consensus 15 l~lA~~L~~~G~~V~l~E~~~~~~~~--------~~--------r~~~l~~~~~~~L~~lG~ 60 (387)
T COG0654 15 LALALALARAGLDVTLLERAPRELLE--------RG--------RGIALSPNALRALERLGL 60 (387)
T ss_pred HHHHHHHHhCCCcEEEEccCcccccc--------Cc--------eeeeecHhHHHHHHHcCC
Confidence 579999999999999999881 1111 11 011223789999999999
No 89
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=96.47 E-value=0.0048 Score=44.08 Aligned_cols=50 Identities=12% Similarity=0.076 Sum_probs=33.6
Q ss_pred ChhHHHHhhCC--CcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCc
Q 034688 1 MSTAVELLDQG--HEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADEN 64 (87)
Q Consensus 1 L~aA~~L~~~G--~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~ 64 (87)
|++|..|+++| ++|+|+|+++..... .++ .| . .-.++..++++++|+.+.
T Consensus 14 l~~A~~L~~~g~g~~v~liE~~~~~~~~------~~~----~~-~---~l~~~~~~~l~~lGl~~~ 65 (403)
T PRK07333 14 LALAVALKQAAPHLPVTVVDAAPAGAWS------RDP----RA-S---AIAAAARRMLEALGVWDE 65 (403)
T ss_pred HHHHHHHhcCCCCCEEEEEeCCCcccCC------CCc----ce-E---EecHHHHHHHHHCCChhh
Confidence 58999999985 999999998753210 000 00 0 113678889999998654
No 90
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=96.42 E-value=0.0029 Score=49.40 Aligned_cols=28 Identities=32% Similarity=0.490 Sum_probs=26.2
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVA 28 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~ 28 (87)
|+||+.|+++|++|+|||+.+.+||.++
T Consensus 444 l~aA~~l~~~G~~V~v~e~~~~~GG~l~ 471 (752)
T PRK12778 444 LSFAGDLAKRGYDVTVFEALHEIGGVLK 471 (752)
T ss_pred HHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence 6899999999999999999999999875
No 91
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=96.36 E-value=0.0027 Score=46.19 Aligned_cols=27 Identities=26% Similarity=0.330 Sum_probs=24.8
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceE
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKV 27 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~ 27 (87)
|+||..|+++|++|+|+|+.+.+|+++
T Consensus 10 l~aAi~aa~~G~~V~llEk~~~~G~k~ 36 (400)
T TIGR00275 10 LMAAITAAREGLSVLLLEKNKKIGKKL 36 (400)
T ss_pred HHHHHHHHhcCCcEEEEecCccccccc
Confidence 579999999999999999999999765
No 92
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=96.35 E-value=0.0038 Score=44.38 Aligned_cols=54 Identities=15% Similarity=0.093 Sum_probs=36.2
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCce
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENL 65 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l 65 (87)
|++|..|++.|++|+|+|+++.+..... + ++.... .-.++..++++++|+.+.+
T Consensus 18 l~~A~~L~~~G~~v~v~E~~~~~~~~~~------~--~~~r~~---~l~~~~~~~l~~~g~~~~~ 71 (388)
T PRK07608 18 ASLALALAQSGLRVALLAPRAPPRPADD------A--WDSRVY---AISPSSQAFLERLGVWQAL 71 (388)
T ss_pred HHHHHHHHhCCCeEEEEecCCCccccCC------C--CCCceE---eecHHHHHHHHHcCchhhh
Confidence 5899999999999999999987543110 0 111111 1236788888999886543
No 93
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=96.34 E-value=0.017 Score=43.02 Aligned_cols=80 Identities=23% Similarity=0.326 Sum_probs=59.0
Q ss_pred HHHHhhCCCcEEEEeeCCCcCceEEEEe----------c----------cCCeEEeeeeEEEeCCChHHHHHHHHcCCCC
Q 034688 4 AVELLDQGHEVDIYELRSFIGGKVASFV----------C----------KRGNHIEISLHVFFGCYNNLFRLTKKVGADE 63 (87)
Q Consensus 4 A~~L~~~G~~V~v~E~~~~~GG~~~s~~----------~----------~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~ 63 (87)
|..|++.|.+|+.+|+++.-||..+|.. . ...+.+|+-|..++.+. .+.+++-.-++..
T Consensus 20 a~als~~GkkVLhiD~n~yYGg~~asl~l~~l~~~~~~~~~~~~~~~~~sR~ynIDL~PKll~a~g-~LV~lLi~S~V~r 98 (438)
T PF00996_consen 20 AAALSRSGKKVLHIDRNDYYGGEWASLNLDQLYEWFRPKQWTPPESLGRSRDYNIDLIPKLLYARG-PLVKLLISSGVTR 98 (438)
T ss_dssp HHHHHHTT--EEEE-SSSSSCGGG-EE-HHHHHHHHCCTCCHHHHHHHTGGGC-EESS--BEETTS-HHHHHHHHCTGGG
T ss_pred HHHHHhcCCEEEecCCCCCcCCchhcccHHHHHHHhhccccccccccccccceeEecchHhhhccC-HHHHHHHhCCccc
Confidence 4578999999999999999999999984 0 11478999999888775 6888888899998
Q ss_pred ceeeeCceeeEEccCCeEEEE
Q 034688 64 NLLMKDHTHKFVNKGGEIGGI 84 (87)
Q Consensus 64 ~l~~~~~~~~~~~~~g~~~~~ 84 (87)
.+.++.-...|.+.+|++..+
T Consensus 99 YLEFk~V~~~~v~~~~~l~kV 119 (438)
T PF00996_consen 99 YLEFKAVDGSYVYKNGKLHKV 119 (438)
T ss_dssp GSEEEEESEEEEEETTEEEE-
T ss_pred ceEEEEcceeEEEeCCEEeeC
Confidence 888887777788889888764
No 94
>PLN02661 Putative thiazole synthesis
Probab=96.32 E-value=0.0077 Score=43.80 Aligned_cols=27 Identities=33% Similarity=0.324 Sum_probs=23.7
Q ss_pred ChhHHHHhhC-CCcEEEEeeCCCcCceE
Q 034688 1 MSTAVELLDQ-GHEVDIYELRSFIGGKV 27 (87)
Q Consensus 1 L~aA~~L~~~-G~~V~v~E~~~~~GG~~ 27 (87)
|+||++|+++ |++|+|+|+...+||.+
T Consensus 105 l~AA~~La~~~g~kV~viEk~~~~GGG~ 132 (357)
T PLN02661 105 LSCAYELSKNPNVKVAIIEQSVSPGGGA 132 (357)
T ss_pred HHHHHHHHHcCCCeEEEEecCcccccce
Confidence 5799999986 89999999999998843
No 95
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=96.31 E-value=0.003 Score=46.65 Aligned_cols=28 Identities=29% Similarity=0.317 Sum_probs=25.6
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVA 28 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~ 28 (87)
++||..+++.|++|+|+|+++.+||.|.
T Consensus 16 ~~AA~~aa~~G~~V~liE~~~~~GG~c~ 43 (466)
T PRK06115 16 YNAAIRAGQLGLKVACVEGRSTLGGTCL 43 (466)
T ss_pred HHHHHHHHhCCCeEEEEecCCceeeeec
Confidence 5799999999999999999889999883
No 96
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=96.27 E-value=0.0038 Score=45.67 Aligned_cols=28 Identities=21% Similarity=0.424 Sum_probs=25.4
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEE
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVAS 29 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s 29 (87)
|+||..|++.|++|+|+|+ +.+||.|..
T Consensus 14 l~aA~~la~~G~~v~lie~-~~~GG~~~~ 41 (461)
T TIGR01350 14 YVAAIRAAQLGLKVALVEK-EYLGGTCLN 41 (461)
T ss_pred HHHHHHHHhCCCeEEEEec-CCCCCceee
Confidence 5799999999999999999 899998754
No 97
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=96.24 E-value=0.012 Score=43.14 Aligned_cols=62 Identities=15% Similarity=0.078 Sum_probs=35.5
Q ss_pred ChhHHHHhh----CCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCcee
Q 034688 1 MSTAVELLD----QGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENLL 66 (87)
Q Consensus 1 L~aA~~L~~----~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l~ 66 (87)
|++|+.|++ +|++|+|+|+++.+.-....+....+. .+ .. ...-.++.+++++++|+.+.+.
T Consensus 13 l~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~-~~--~R-~~~l~~~s~~~L~~lG~~~~l~ 78 (437)
T TIGR01989 13 LALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGP-YS--NR-VSSITPASISFFKKIGAWDHIQ 78 (437)
T ss_pred HHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCC-CC--CC-eEEcCHHHHHHHHHcCchhhhh
Confidence 589999998 899999999954332100000000000 00 00 1123478899999999876543
No 98
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=96.24 E-value=0.0043 Score=47.88 Aligned_cols=29 Identities=31% Similarity=0.575 Sum_probs=26.6
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEE
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVAS 29 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s 29 (87)
|+||+.|++.|++|+|+|+.+++||.++.
T Consensus 206 l~aA~~La~~G~~Vtv~e~~~~~GG~l~~ 234 (652)
T PRK12814 206 LTAAYYLLRKGHDVTIFDANEQAGGMMRY 234 (652)
T ss_pred HHHHHHHHHCCCcEEEEecCCCCCceeee
Confidence 58999999999999999999999998754
No 99
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=96.19 E-value=0.0049 Score=45.65 Aligned_cols=28 Identities=32% Similarity=0.570 Sum_probs=25.9
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVA 28 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~ 28 (87)
|+||..|++.|++|+|+|+.+.+||..+
T Consensus 156 l~aA~~l~~~G~~V~vie~~~~~GG~l~ 183 (471)
T PRK12810 156 LAAADQLARAGHKVTVFERADRIGGLLR 183 (471)
T ss_pred HHHHHHHHhCCCcEEEEecCCCCCceee
Confidence 5899999999999999999999999764
No 100
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=96.17 E-value=0.0048 Score=45.77 Aligned_cols=29 Identities=24% Similarity=0.344 Sum_probs=26.5
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEE
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVAS 29 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s 29 (87)
|+||+.|++.|++|+|||+.+.+||.++.
T Consensus 154 l~aA~~l~~~G~~V~i~e~~~~~gG~l~~ 182 (467)
T TIGR01318 154 LACADILARAGVQVVVFDRHPEIGGLLTF 182 (467)
T ss_pred HHHHHHHHHcCCeEEEEecCCCCCceeee
Confidence 57999999999999999999999998754
No 101
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=96.15 E-value=0.0034 Score=44.41 Aligned_cols=24 Identities=17% Similarity=0.108 Sum_probs=21.2
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcC
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIG 24 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~G 24 (87)
+++|++|+++|.+|+|+|+.+..+
T Consensus 13 ~s~A~~La~~g~~V~l~e~~~~~~ 36 (380)
T TIGR01377 13 CFAAYHLAKHGKKTLLLEQFDLPH 36 (380)
T ss_pred HHHHHHHHHCCCeEEEEeccCCCC
Confidence 589999999999999999987654
No 102
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=96.14 E-value=0.0054 Score=50.79 Aligned_cols=29 Identities=31% Similarity=0.526 Sum_probs=27.1
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEE
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVAS 29 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s 29 (87)
|+||-.|-+.|+-|+|||+++|+||...-
T Consensus 1798 laaadqlnk~gh~v~vyer~dr~ggll~y 1826 (2142)
T KOG0399|consen 1798 LAAADQLNKAGHTVTVYERSDRVGGLLMY 1826 (2142)
T ss_pred hhHHHHHhhcCcEEEEEEecCCcCceeee
Confidence 68999999999999999999999998864
No 103
>PRK06834 hypothetical protein; Provisional
Probab=96.14 E-value=0.0084 Score=44.79 Aligned_cols=47 Identities=21% Similarity=0.252 Sum_probs=33.6
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCc---CceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCce
Q 034688 1 MSTAVELLDQGHEVDIYELRSFI---GGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENL 65 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~---GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l 65 (87)
|++|..|+++|++|+|+|+.+.+ +.|+.+ -.++.+++++++|+.+.+
T Consensus 16 l~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~------------------l~~~s~~~L~~lGl~~~l 65 (488)
T PRK06834 16 LMLAGELALAGVDVAIVERRPNQELVGSRAGG------------------LHARTLEVLDQRGIADRF 65 (488)
T ss_pred HHHHHHHHHCCCcEEEEecCCCCCCCCcceee------------------ECHHHHHHHHHcCcHHHH
Confidence 57999999999999999998753 212111 136677888888876543
No 104
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=96.11 E-value=0.005 Score=45.20 Aligned_cols=28 Identities=25% Similarity=0.302 Sum_probs=24.9
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEE
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVAS 29 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s 29 (87)
++||..+++.|++|+|+|+ +.+||.|..
T Consensus 15 ~~aA~~aa~~G~~V~lie~-~~~GG~c~~ 42 (446)
T TIGR01424 15 VRAARLAANHGAKVAIAEE-PRVGGTCVI 42 (446)
T ss_pred HHHHHHHHhCCCcEEEEec-CccCceeec
Confidence 4799999999999999998 589998863
No 105
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=96.08 E-value=0.0046 Score=46.89 Aligned_cols=27 Identities=37% Similarity=0.544 Sum_probs=24.1
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceE
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKV 27 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~ 27 (87)
|+||..|.+.|++|++||+++.+||.=
T Consensus 14 L~a~k~l~e~g~~~~~fE~~~~iGG~W 40 (531)
T PF00743_consen 14 LAAAKNLLEEGLEVTCFEKSDDIGGLW 40 (531)
T ss_dssp HHHHHHHHHTT-EEEEEESSSSSSGGG
T ss_pred HHHHHHHHHCCCCCeEEecCCCCCccC
Confidence 678999999999999999999999965
No 106
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=96.05 E-value=0.0052 Score=45.03 Aligned_cols=26 Identities=27% Similarity=0.284 Sum_probs=22.7
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCce
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGK 26 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~ 26 (87)
++||+.|+++|++|+|+|+.+.+|.+
T Consensus 18 ~~aA~~La~~G~~V~llEr~~~~g~k 43 (428)
T PRK10157 18 SVAALVLAREGAQVLVIERGNSAGAK 43 (428)
T ss_pred HHHHHHHHhCCCeEEEEEcCCCCCCc
Confidence 47999999999999999999877643
No 107
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=96.05 E-value=0.0055 Score=44.75 Aligned_cols=28 Identities=25% Similarity=0.347 Sum_probs=24.5
Q ss_pred ChhHHHHhhCCCcEEEEeeCCC-cCceEE
Q 034688 1 MSTAVELLDQGHEVDIYELRSF-IGGKVA 28 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~-~GG~~~ 28 (87)
++||..|++.|++|+|+|+++. +||.|-
T Consensus 16 ~~aA~~l~~~g~~V~liE~~~~~~GG~c~ 44 (438)
T PRK07251 16 KTLAAKLASAGKKVALVEESKAMYGGTCI 44 (438)
T ss_pred HHHHHHHHhCCCEEEEEecCCcccceeee
Confidence 5799999999999999999875 699763
No 108
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=96.05 E-value=0.0072 Score=45.63 Aligned_cols=59 Identities=22% Similarity=0.237 Sum_probs=43.9
Q ss_pred ChhHHHHhhC----CCcEEEEeeCCCcCceEEEEecc-CCeEEeeeeEEEeCCChHHHHHHHHcC
Q 034688 1 MSTAVELLDQ----GHEVDIYELRSFIGGKVASFVCK-RGNHIEISLHVFFGCYNNLFRLTKKVG 60 (87)
Q Consensus 1 L~aA~~L~~~----G~~V~v~E~~~~~GG~~~s~~~~-~g~~~d~G~~~~~~~~~~~~~l~~~lg 60 (87)
||||.+|-+. |-+|+|||+.+.+||-+-+.-+. +|+++-.|... -..+..+.++++.+-
T Consensus 15 LAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg~g~~~~GYv~RgGR~~-~~~~eclwdLls~IP 78 (500)
T PF06100_consen 15 LAAAVFLIRDAKMPGENIHILEELDVPGGSLDGAGDPENGYVIRGGRMM-EFHYECLWDLLSSIP 78 (500)
T ss_pred HHhhhhhhccCCCCccceEEEeCCCCCCCcccCCCCCCCCeeecCCccc-cchhHHHHHHHHhCC
Confidence 7899999774 56999999999999988765432 37777666543 456677888887765
No 109
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=96.03 E-value=0.0052 Score=43.49 Aligned_cols=25 Identities=32% Similarity=0.457 Sum_probs=22.5
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCc
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGG 25 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG 25 (87)
|++||+|+++|.+|+|+|+....+|
T Consensus 17 ls~A~~La~~G~~V~vie~~~~~~g 41 (387)
T COG0665 17 LSAAYYLAERGADVTVLEAGEAGGG 41 (387)
T ss_pred HHHHHHHHHcCCEEEEEecCccCCc
Confidence 5899999999999999999887764
No 110
>PRK06185 hypothetical protein; Provisional
Probab=96.02 E-value=0.02 Score=41.08 Aligned_cols=49 Identities=16% Similarity=0.089 Sum_probs=33.8
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCce
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENL 65 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l 65 (87)
|++|..|+++|++|+|+|+.+...- +. .|.. -.++..++++++|+.+.+
T Consensus 19 l~~A~~La~~G~~v~liE~~~~~~~--------~~----r~~~----l~~~s~~~L~~lG~~~~~ 67 (407)
T PRK06185 19 MMLGLLLARAGVDVTVLEKHADFLR--------DF----RGDT----VHPSTLELMDELGLLERF 67 (407)
T ss_pred HHHHHHHHhCCCcEEEEecCCccCc--------cc----cCce----eChhHHHHHHHcCChhHH
Confidence 5799999999999999999864310 00 0111 135678899999986543
No 111
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=95.98 E-value=0.0074 Score=41.06 Aligned_cols=28 Identities=18% Similarity=0.210 Sum_probs=24.3
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEE
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVAS 29 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s 29 (87)
|+||..|++.|++|+|+|+.+ +||.+..
T Consensus 13 l~aA~~l~~~g~~v~lie~~~-~gg~~~~ 40 (300)
T TIGR01292 13 LTAAIYAARANLKTLIIEGME-PGGQLTT 40 (300)
T ss_pred HHHHHHHHHCCCCEEEEeccC-CCcceee
Confidence 589999999999999999886 7887654
No 112
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=95.98 E-value=0.0056 Score=44.59 Aligned_cols=27 Identities=30% Similarity=0.425 Sum_probs=24.6
Q ss_pred ChhHHHHhhCC-CcEEEEeeCCCcCceE
Q 034688 1 MSTAVELLDQG-HEVDIYELRSFIGGKV 27 (87)
Q Consensus 1 L~aA~~L~~~G-~~V~v~E~~~~~GG~~ 27 (87)
|+||+.++++| .+|+|+||.+..||.+
T Consensus 12 l~AA~~aa~~G~~~V~vlEk~~~~gg~s 39 (439)
T TIGR01813 12 LSAALSAKKAGAANVVLLEKMPVIGGNS 39 (439)
T ss_pred HHHHHHHHHcCCccEEEEecCCCCCCcc
Confidence 57999999999 9999999999998864
No 113
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=95.94 E-value=0.0053 Score=44.13 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=23.5
Q ss_pred ChhHHHHhhC--CCcEEEEeeCCCcCceE
Q 034688 1 MSTAVELLDQ--GHEVDIYELRSFIGGKV 27 (87)
Q Consensus 1 L~aA~~L~~~--G~~V~v~E~~~~~GG~~ 27 (87)
+++|++|+++ |++|+|+|+.+.+|+.+
T Consensus 15 ~s~A~~La~~~~g~~V~llE~~~~~~~~a 43 (393)
T PRK11728 15 LSTAMQLQERYPGARIAVLEKESGPARHQ 43 (393)
T ss_pred HHHHHHHHHhCCCCeEEEEeCCCcccccc
Confidence 4799999998 99999999998877644
No 114
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=95.89 E-value=0.0066 Score=44.99 Aligned_cols=28 Identities=32% Similarity=0.265 Sum_probs=25.1
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVA 28 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~ 28 (87)
++||..|++.|++|+|+|+.+.+||.|.
T Consensus 17 ~~aA~~aa~~G~~V~lie~~~~~GG~c~ 44 (471)
T PRK06467 17 YSAAFRAADLGLETVCVERYSTLGGVCL 44 (471)
T ss_pred HHHHHHHHHCCCcEEEEecCCccccccc
Confidence 4789999999999999999889999763
No 115
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=95.89 E-value=0.0065 Score=44.61 Aligned_cols=28 Identities=25% Similarity=0.381 Sum_probs=24.7
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEE
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVAS 29 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s 29 (87)
|+||..|++.|++|+|+|+.. +||.|..
T Consensus 17 ~~aA~~aa~~G~~V~liE~~~-~GG~c~~ 44 (462)
T PRK06416 17 YVAAIRAAQLGLKVAIVEKEK-LGGTCLN 44 (462)
T ss_pred HHHHHHHHHCCCcEEEEeccc-cccceee
Confidence 579999999999999999887 9997744
No 116
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=95.88 E-value=0.0078 Score=44.91 Aligned_cols=29 Identities=28% Similarity=0.445 Sum_probs=26.3
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEE
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVAS 29 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s 29 (87)
|+||..|++.|++|+|+|+.+++||.++.
T Consensus 156 l~aA~~L~~~g~~V~v~e~~~~~gG~l~~ 184 (485)
T TIGR01317 156 LAAADQLNRAGHTVTVFEREDRCGGLLMY 184 (485)
T ss_pred HHHHHHHHHcCCeEEEEecCCCCCceeec
Confidence 57999999999999999999999997753
No 117
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=95.88 E-value=0.0077 Score=44.34 Aligned_cols=28 Identities=32% Similarity=0.538 Sum_probs=25.7
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVA 28 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~ 28 (87)
|+||+.|++.|++|+|+|+.+.+||...
T Consensus 153 l~aA~~l~~~g~~V~lie~~~~~gG~l~ 180 (457)
T PRK11749 153 LTAAHRLARKGYDVTIFEARDKAGGLLR 180 (457)
T ss_pred HHHHHHHHhCCCeEEEEccCCCCCcEee
Confidence 5799999999999999999999999764
No 118
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=95.85 E-value=0.0088 Score=43.71 Aligned_cols=29 Identities=28% Similarity=0.415 Sum_probs=25.5
Q ss_pred ChhHHHHhhCCCcEEEEeeCC-CcCceEEE
Q 034688 1 MSTAVELLDQGHEVDIYELRS-FIGGKVAS 29 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~-~~GG~~~s 29 (87)
|+||..|+++|++|+|+|+.+ .+||.|..
T Consensus 16 l~aA~~la~~g~~V~lie~~~~~~GG~~~~ 45 (441)
T PRK08010 16 KTLAVTLAKAGWRVALIEQSNAMYGGTCIN 45 (441)
T ss_pred HHHHHHHHHCCCeEEEEcCCCCccceeEee
Confidence 579999999999999999987 58998854
No 119
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=95.83 E-value=0.014 Score=41.53 Aligned_cols=21 Identities=24% Similarity=0.214 Sum_probs=18.8
Q ss_pred ChhHHHHhhC---CCcEEEEeeCC
Q 034688 1 MSTAVELLDQ---GHEVDIYELRS 21 (87)
Q Consensus 1 L~aA~~L~~~---G~~V~v~E~~~ 21 (87)
|++|+.|+++ |++|+|+|+..
T Consensus 16 l~~A~~L~~~~~~G~~v~v~E~~~ 39 (395)
T PRK05732 16 ATLALALSRLSHGGLPVALIEAFA 39 (395)
T ss_pred HHHHHHhhhcccCCCEEEEEeCCC
Confidence 5899999998 99999999963
No 120
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=95.81 E-value=0.0058 Score=44.03 Aligned_cols=25 Identities=28% Similarity=0.474 Sum_probs=22.9
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCc
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGG 25 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG 25 (87)
|+||..++++|.+|+|+|+.+..||
T Consensus 12 l~AA~~Aae~G~~V~lvek~~~~gg 36 (417)
T PF00890_consen 12 LAAAIEAAEAGAKVLLVEKGPRLGG 36 (417)
T ss_dssp HHHHHHHHHTTT-EEEEESSSGGGS
T ss_pred HHHHHHHhhhcCeEEEEEeeccccc
Confidence 5899999999999999999999999
No 121
>PTZ00188 adrenodoxin reductase; Provisional
Probab=95.80 E-value=0.0094 Score=45.14 Aligned_cols=31 Identities=23% Similarity=0.134 Sum_probs=25.8
Q ss_pred ChhHHHH-hhCCCcEEEEeeCCCcCceEEEEe
Q 034688 1 MSTAVEL-LDQGHEVDIYELRSFIGGKVASFV 31 (87)
Q Consensus 1 L~aA~~L-~~~G~~V~v~E~~~~~GG~~~s~~ 31 (87)
|+||.+| ++.|++|+|||+.+.+||.++.-.
T Consensus 52 lyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~GV 83 (506)
T PTZ00188 52 LYCCKHLLKHERVKVDIFEKLPNPYGLIRYGV 83 (506)
T ss_pred HHHHHHHHHhcCCeEEEEecCCCCccEEEEeC
Confidence 4677765 467999999999999999998653
No 122
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=95.77 E-value=0.019 Score=40.91 Aligned_cols=55 Identities=16% Similarity=0.200 Sum_probs=34.1
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCce
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENL 65 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l 65 (87)
|++|..|+++|++|+|+|+++... . ..+...+ .+ ...-.++..++++++|+.+.+
T Consensus 18 l~~A~~La~~G~~V~liE~~~~~~-----~--~~~~~~~--~r-~~~l~~~~~~~l~~lGl~~~~ 72 (391)
T PRK08020 18 AALALGLAQHGFSVAVLEHAAPAP-----F--DADSQPD--VR-ISAISAASVALLKGLGVWDAV 72 (391)
T ss_pred HHHHHHHhcCCCEEEEEcCCCCCc-----c--cccCCCC--ce-EEeccHHHHHHHHHcCChhhh
Confidence 578999999999999999986421 0 0000001 11 112235678889999986543
No 123
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=95.72 E-value=0.0097 Score=44.64 Aligned_cols=27 Identities=22% Similarity=0.313 Sum_probs=24.6
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceE
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKV 27 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~ 27 (87)
|+||++++++|.+|+|+|+.+..||.+
T Consensus 19 l~aA~~aa~~G~~V~vlEk~~~~Gg~t 45 (513)
T PRK12837 19 VAGAYTAAREGLSVALVEATDKFGGTT 45 (513)
T ss_pred HHHHHHHHHCCCcEEEEecCCCCCcce
Confidence 589999999999999999999988855
No 124
>PRK06116 glutathione reductase; Validated
Probab=95.71 E-value=0.0064 Score=44.55 Aligned_cols=27 Identities=22% Similarity=0.358 Sum_probs=24.1
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVA 28 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~ 28 (87)
|+||..|+++|++|+|+|+. .+||.|.
T Consensus 17 ~~aA~~~a~~G~~V~liE~~-~~GG~c~ 43 (450)
T PRK06116 17 IASANRAAMYGAKVALIEAK-RLGGTCV 43 (450)
T ss_pred HHHHHHHHHCCCeEEEEecc-chhhhhh
Confidence 57999999999999999985 8999773
No 125
>PRK10015 oxidoreductase; Provisional
Probab=95.71 E-value=0.0085 Score=43.98 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=21.6
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcC
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIG 24 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~G 24 (87)
++||+.|+++|++|+|+|+.+.+|
T Consensus 18 ~~aA~~LA~~G~~VlliEr~~~~g 41 (429)
T PRK10015 18 SVAALVMARAGLDVLVIERGDSAG 41 (429)
T ss_pred HHHHHHHHhCCCeEEEEecCCCCC
Confidence 589999999999999999988764
No 126
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=95.68 E-value=0.0096 Score=42.12 Aligned_cols=22 Identities=23% Similarity=0.223 Sum_probs=20.1
Q ss_pred ChhHHHHhhCCCcEEEEeeCCC
Q 034688 1 MSTAVELLDQGHEVDIYELRSF 22 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~ 22 (87)
+++|++|+++|++|+|+|+...
T Consensus 13 ~s~A~~L~~~G~~V~vle~~~~ 34 (365)
T TIGR03364 13 LAHAYAAARRGLSVTVIERSSR 34 (365)
T ss_pred HHHHHHHHHCCCeEEEEeCCCC
Confidence 5899999999999999999875
No 127
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=95.66 E-value=0.0082 Score=42.44 Aligned_cols=24 Identities=13% Similarity=-0.148 Sum_probs=21.2
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcC
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIG 24 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~G 24 (87)
+++|++|++.|++|+|+|+....+
T Consensus 16 ~s~A~~L~~~g~~V~lie~~~~~~ 39 (376)
T PRK11259 16 SAAGYYLARRGLRVLGLDRFMPPH 39 (376)
T ss_pred HHHHHHHHHCCCeEEEEecccCCC
Confidence 579999999999999999987654
No 128
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=95.64 E-value=0.0091 Score=42.87 Aligned_cols=25 Identities=24% Similarity=0.240 Sum_probs=21.8
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCc
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGG 25 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG 25 (87)
|++|++|+++|++|+|+|+...+|.
T Consensus 13 ls~A~~l~~~g~~V~vle~~~~~~~ 37 (416)
T PRK00711 13 VTSAWYLAQAGHEVTVIDRQPGPAL 37 (416)
T ss_pred HHHHHHHHHCCCEEEEEeCCCchhh
Confidence 5899999999999999999876554
No 129
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=95.63 E-value=0.0092 Score=43.76 Aligned_cols=28 Identities=25% Similarity=0.449 Sum_probs=23.6
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVA 28 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~ 28 (87)
++||..++++|.+|+|+|+.+.+||...
T Consensus 12 ~~AAi~AAr~G~~VlLiE~~~~lGG~~t 39 (428)
T PF12831_consen 12 VAAAIAAARAGAKVLLIEKGGFLGGMAT 39 (428)
T ss_dssp HHHHHHHHHTTS-EEEE-SSSSSTGGGG
T ss_pred HHHHHHHHHCCCEEEEEECCccCCCcce
Confidence 4799999999999999999999999764
No 130
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=95.63 E-value=0.01 Score=40.10 Aligned_cols=25 Identities=36% Similarity=0.347 Sum_probs=22.7
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCc
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGG 25 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG 25 (87)
|++|+.|++.|++|+|+|+++.++.
T Consensus 13 l~~A~~l~~~g~~v~vie~~~~~~~ 37 (295)
T TIGR02032 13 ASAAYRLADKGLRVLLLEKKSFPRY 37 (295)
T ss_pred HHHHHHHHHCCCeEEEEeccCCCCc
Confidence 5799999999999999999988765
No 131
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=95.62 E-value=0.0099 Score=43.90 Aligned_cols=28 Identities=18% Similarity=0.219 Sum_probs=24.8
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEE
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVAS 29 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s 29 (87)
++||..|++.|++|+|+|+. .+||.|..
T Consensus 17 ~~aA~~aa~~G~~v~lie~~-~~GG~c~~ 44 (472)
T PRK05976 17 YVAAIRAGQLGLKTALVEKG-KLGGTCLH 44 (472)
T ss_pred HHHHHHHHhCCCeEEEEEcc-CCCcceEc
Confidence 57999999999999999985 89998854
No 132
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=95.62 E-value=0.012 Score=44.55 Aligned_cols=28 Identities=36% Similarity=0.560 Sum_probs=25.9
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVA 28 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~ 28 (87)
|+||+.|++.|++|+|+|+.+.+||..+
T Consensus 150 L~aA~~l~~~G~~V~v~e~~~~~GG~l~ 177 (564)
T PRK12771 150 LSAAYHLRRMGHAVTIFEAGPKLGGMMR 177 (564)
T ss_pred HHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence 6899999999999999999999999775
No 133
>PRK14727 putative mercuric reductase; Provisional
Probab=95.62 E-value=0.0099 Score=44.12 Aligned_cols=29 Identities=28% Similarity=0.449 Sum_probs=26.3
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEE
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVAS 29 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s 29 (87)
++||..|++.|.+|+|+|+.+.+||.|..
T Consensus 29 ~~~a~~~~~~g~~v~~ie~~~~~GG~c~n 57 (479)
T PRK14727 29 FAAAIKAAEHGARVTIIEGADVIGGCCVN 57 (479)
T ss_pred HHHHHHHHhCCCeEEEEEccCcceeEecc
Confidence 47899999999999999999999998854
No 134
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=95.57 E-value=0.0092 Score=44.00 Aligned_cols=27 Identities=19% Similarity=0.374 Sum_probs=23.9
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVA 28 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~ 28 (87)
++||..|++.|++|+|+|+. .+||.|.
T Consensus 15 ~~aA~~aa~~G~~V~liE~~-~~GG~c~ 41 (450)
T TIGR01421 15 IASARRAAEHGAKALLVEAK-KLGGTCV 41 (450)
T ss_pred HHHHHHHHHCCCcEEEeccc-cccccee
Confidence 47999999999999999985 6999774
No 135
>PRK07121 hypothetical protein; Validated
Probab=95.56 E-value=0.011 Score=44.00 Aligned_cols=27 Identities=26% Similarity=0.293 Sum_probs=24.7
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceE
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKV 27 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~ 27 (87)
|+||+.++++|.+|+|+||.+..||..
T Consensus 33 l~AA~~aae~G~~VillEK~~~~gG~s 59 (492)
T PRK07121 33 ACAAIEAAAAGARVLVLERAAGAGGAT 59 (492)
T ss_pred HHHHHHHHHCCCeEEEEeCCCCCCCcc
Confidence 589999999999999999999999855
No 136
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=95.52 E-value=0.011 Score=43.84 Aligned_cols=26 Identities=31% Similarity=0.480 Sum_probs=24.6
Q ss_pred ChhHHHHhhCCCc-EEEEeeCCCcCce
Q 034688 1 MSTAVELLDQGHE-VDIYELRSFIGGK 26 (87)
Q Consensus 1 L~aA~~L~~~G~~-V~v~E~~~~~GG~ 26 (87)
|++|++|.++|.+ ++||||+.++||-
T Consensus 21 laaa~~L~~~g~~~~~i~Ek~~~~Gg~ 47 (443)
T COG2072 21 LAAAYALKQAGVPDFVIFEKRDDVGGT 47 (443)
T ss_pred HHHHHHHHHcCCCcEEEEEccCCcCCc
Confidence 5899999999998 9999999999996
No 137
>PRK07190 hypothetical protein; Provisional
Probab=95.52 E-value=0.024 Score=42.40 Aligned_cols=23 Identities=13% Similarity=-0.204 Sum_probs=20.9
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCc
Q 034688 1 MSTAVELLDQGHEVDIYELRSFI 23 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~ 23 (87)
|++|..|+++|++|+|+|+.+.+
T Consensus 18 L~lA~~Lar~Gi~V~llEr~~~~ 40 (487)
T PRK07190 18 LMCAYLGQLCGLNTVIVDKSDGP 40 (487)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcc
Confidence 57899999999999999999875
No 138
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=95.49 E-value=0.026 Score=42.51 Aligned_cols=53 Identities=30% Similarity=0.320 Sum_probs=36.2
Q ss_pred ChhHHHHhh------CCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCc
Q 034688 1 MSTAVELLD------QGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADEN 64 (87)
Q Consensus 1 L~aA~~L~~------~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~ 64 (87)
||||.+|.+ .-++|+|+|++..+||.+-| |.++|-++- .+++.=+++-+.+..
T Consensus 89 LsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlS-----Gaviep~al------dEL~P~wke~~apl~ 147 (621)
T KOG2415|consen 89 LSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLS-----GAVIEPGAL------DELLPDWKEDGAPLN 147 (621)
T ss_pred HHHHHHHHHHHHhcCCceEEEEEeeccccCCceec-----ceeeccchh------hhhCcchhhcCCccc
Confidence 689999864 34799999999999997755 566665542 344444555555543
No 139
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=95.49 E-value=0.034 Score=41.25 Aligned_cols=47 Identities=32% Similarity=0.455 Sum_probs=32.9
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCC
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADE 63 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~ 63 (87)
|++|..|+++|++|+|||++..+-|- |..+.+. -|.++.++.+++.+
T Consensus 15 la~A~~l~r~G~~v~VlE~~e~~R~~--------g~si~L~--------~ng~~aLkai~~~e 61 (420)
T KOG2614|consen 15 LATALALHRKGIDVVVLESREDPRGE--------GTSINLA--------LNGWRALKAIGLKE 61 (420)
T ss_pred HHHHHHHHHcCCeEEEEeeccccccC--------Ccceeeh--------hhHHHHHHHcccHH
Confidence 58999999999999999998776553 2222221 23667777777554
No 140
>PRK13984 putative oxidoreductase; Provisional
Probab=95.45 E-value=0.015 Score=44.33 Aligned_cols=28 Identities=39% Similarity=0.420 Sum_probs=25.8
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVA 28 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~ 28 (87)
|+||..|+++|++|+|||+.+.+||..+
T Consensus 296 l~aA~~L~~~G~~v~vie~~~~~gG~~~ 323 (604)
T PRK13984 296 LSAAYFLATMGYEVTVYESLSKPGGVMR 323 (604)
T ss_pred HHHHHHHHHCCCeEEEEecCCCCCceEe
Confidence 5799999999999999999999999765
No 141
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=95.34 E-value=0.013 Score=41.73 Aligned_cols=26 Identities=31% Similarity=0.427 Sum_probs=22.8
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCce
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGK 26 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~ 26 (87)
|++|+.|++.|++|+|+|+++.+||-
T Consensus 12 l~~A~~la~~g~~v~liE~~~~~~~~ 37 (388)
T TIGR01790 12 LAIALELARPGLRVQLIEPHPPIPGN 37 (388)
T ss_pred HHHHHHHHhCCCeEEEEccCCCCCCC
Confidence 57899999999999999999887763
No 142
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=95.26 E-value=0.015 Score=44.17 Aligned_cols=28 Identities=29% Similarity=0.437 Sum_probs=25.5
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVA 28 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~ 28 (87)
|+||+.++++|.+|+|+||.+..||...
T Consensus 22 l~AA~~aa~~G~~v~llEk~~~~gG~~~ 49 (574)
T PRK12842 22 LSAAITARKLGLDVVVLEKEPVFGGTTA 49 (574)
T ss_pred HHHHHHHHHcCCeEEEEecCCCCCCccc
Confidence 5899999999999999999999998764
No 143
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=95.24 E-value=0.016 Score=42.72 Aligned_cols=28 Identities=18% Similarity=0.341 Sum_probs=24.3
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEE
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVAS 29 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s 29 (87)
++||..|++.|.+|+|+|+. .+||.|..
T Consensus 17 ~~AA~~aa~~G~~V~lie~~-~~GG~c~~ 44 (466)
T PRK07818 17 YVAAIRAAQLGLKTAVVEKK-YWGGVCLN 44 (466)
T ss_pred HHHHHHHHhCCCeEEEEecC-CCCCceec
Confidence 57999999999999999984 78998754
No 144
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=95.23 E-value=0.016 Score=43.46 Aligned_cols=27 Identities=37% Similarity=0.450 Sum_probs=24.6
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceE
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKV 27 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~ 27 (87)
|+||+.++++|.+|+|+|+.+.+||..
T Consensus 74 l~AAi~Aa~~Ga~VivlEK~~~~GG~s 100 (506)
T PRK06481 74 MSAAIEAKDAGMNPVILEKMPVAGGNT 100 (506)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCcc
Confidence 579999999999999999999999854
No 145
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=95.21 E-value=0.013 Score=43.10 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=18.8
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcC
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIG 24 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~G 24 (87)
|.||..|++.|.+|+|+|+.+++|
T Consensus 13 l~aA~~aa~~g~~V~vlE~~~~~g 36 (409)
T PF03486_consen 13 LMAAITAAEKGARVLVLERNKRVG 36 (409)
T ss_dssp HHHHHHHHHTT--EEEE-SSSSS-
T ss_pred HHHHHHHHhCCCCEEEEeCCcccc
Confidence 579999999999999999999995
No 146
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=95.21 E-value=0.016 Score=42.61 Aligned_cols=27 Identities=22% Similarity=0.448 Sum_probs=23.7
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVA 28 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~ 28 (87)
++||..|+++|++|+|+|+.+ +||.|-
T Consensus 13 ~~aA~~aa~~g~~v~lie~~~-~GG~c~ 39 (463)
T TIGR02053 13 FAAAIKAAELGASVAMVERGP-LGGTCV 39 (463)
T ss_pred HHHHHHHHHCCCeEEEEeCCc-ccCCee
Confidence 479999999999999999876 888764
No 147
>PRK06370 mercuric reductase; Validated
Probab=95.18 E-value=0.017 Score=42.58 Aligned_cols=27 Identities=22% Similarity=0.322 Sum_probs=23.3
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVA 28 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~ 28 (87)
++||..|++.|++|+|+|+. .+||.|.
T Consensus 18 ~~aA~~aa~~G~~v~lie~~-~~GG~c~ 44 (463)
T PRK06370 18 PPLAARAAGLGMKVALIERG-LLGGTCV 44 (463)
T ss_pred HHHHHHHHhCCCeEEEEecC-ccCCcee
Confidence 47999999999999999986 6788764
No 148
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=95.17 E-value=0.016 Score=42.43 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=24.4
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVA 28 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~ 28 (87)
|+||..|++.|++|+|+|+ +.+||.|.
T Consensus 16 l~aA~~l~~~g~~v~lie~-~~~GG~~~ 42 (460)
T PRK06292 16 YVAARRAAKLGKKVALIEK-GPLGGTCL 42 (460)
T ss_pred HHHHHHHHHCCCeEEEEeC-Ccccccee
Confidence 5799999999999999999 78999775
No 149
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=95.17 E-value=0.021 Score=43.23 Aligned_cols=28 Identities=18% Similarity=0.165 Sum_probs=24.8
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEE
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVAS 29 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s 29 (87)
|+||..|++.|++|+|+|+. .+||.+..
T Consensus 17 L~AA~~lar~g~~V~liE~~-~~GG~~~~ 44 (555)
T TIGR03143 17 LSAGIYAGRAKLDTLIIEKD-DFGGQITI 44 (555)
T ss_pred HHHHHHHHHCCCCEEEEecC-CCCceEEe
Confidence 68999999999999999985 79998764
No 150
>PTZ00367 squalene epoxidase; Provisional
Probab=95.17 E-value=0.042 Score=42.08 Aligned_cols=50 Identities=20% Similarity=0.090 Sum_probs=34.4
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCce
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENL 65 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l 65 (87)
+++|..|+++|++|+|+|+++..- .+ .. .|. .-.++..+.++++|+.+.+
T Consensus 46 lalA~aLar~G~~V~VlEr~~~~~--------~~-r~--~G~----~L~p~g~~~L~~LGL~d~l 95 (567)
T PTZ00367 46 PVLAKALSKQGRKVLMLERDLFSK--------PD-RI--VGE----LLQPGGVNALKELGMEECA 95 (567)
T ss_pred HHHHHHHHhcCCEEEEEccccccc--------cc-hh--hhh----hcCHHHHHHHHHCCChhhH
Confidence 578999999999999999875200 00 00 111 1247889999999997644
No 151
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=95.16 E-value=0.014 Score=45.01 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=22.0
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCc
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGG 25 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG 25 (87)
+++|++|+++|++|+|+|+...+|.
T Consensus 273 ~s~A~~La~~G~~V~VlE~~~~~~~ 297 (662)
T PRK01747 273 AALALALARRGWQVTLYEADEAPAQ 297 (662)
T ss_pred HHHHHHHHHCCCeEEEEecCCCccc
Confidence 4799999999999999999876654
No 152
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=95.14 E-value=0.019 Score=43.61 Aligned_cols=27 Identities=33% Similarity=0.417 Sum_probs=24.7
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceE
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKV 27 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~ 27 (87)
|+||+.|+++|.+|+|+|+.+.+||.+
T Consensus 19 l~aA~~~a~~G~~v~liEk~~~~gG~~ 45 (557)
T PRK12844 19 MCAALAAADSGLEPLIVEKQDKVGGST 45 (557)
T ss_pred HHHHHHHHHCCCcEEEEecCCCCCcee
Confidence 579999999999999999999999965
No 153
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=95.07 E-value=0.021 Score=43.12 Aligned_cols=28 Identities=29% Similarity=0.480 Sum_probs=25.1
Q ss_pred ChhHHHHhhCCCcEEEEeeCC--CcCceEE
Q 034688 1 MSTAVELLDQGHEVDIYELRS--FIGGKVA 28 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~--~~GG~~~ 28 (87)
|+||..++++|.+|+|+|+.+ .+||.+.
T Consensus 17 l~AAl~Aa~~G~~VivlEK~~~~~~GG~s~ 46 (549)
T PRK12834 17 LVAAAELADAGKRVLLLDQENEANLGGQAF 46 (549)
T ss_pred HHHHHHHHHCCCeEEEEeCCCCCCCCCcee
Confidence 589999999999999999999 8899653
No 154
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=95.03 E-value=0.021 Score=46.06 Aligned_cols=29 Identities=21% Similarity=0.306 Sum_probs=26.7
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEE
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVAS 29 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s 29 (87)
|+||..|++.|++|+|+|+.+++||.+..
T Consensus 176 LaAA~~aar~G~~V~liD~~~~~GG~~~~ 204 (985)
T TIGR01372 176 LAAALAAARAGARVILVDEQPEAGGSLLS 204 (985)
T ss_pred HHHHHHHHhCCCcEEEEecCCCCCCeeec
Confidence 68999999999999999999999998853
No 155
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=95.03 E-value=0.016 Score=47.05 Aligned_cols=26 Identities=23% Similarity=0.134 Sum_probs=22.7
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCce
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGK 26 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~ 26 (87)
|+||++|++.|++|+|||+.+..|+-
T Consensus 396 LsAA~~La~~Gh~Vtv~E~~~i~gl~ 421 (1028)
T PRK06567 396 FSLSYYLLRSGHNVTAIDGLKITLLP 421 (1028)
T ss_pred HHHHHHHHhCCCeEEEEccccccccc
Confidence 68999999999999999998765553
No 156
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=95.03 E-value=0.028 Score=39.97 Aligned_cols=29 Identities=28% Similarity=0.261 Sum_probs=26.0
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEE
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVAS 29 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s 29 (87)
|+||..|++.|++|+|+|+.+.+||.+..
T Consensus 31 l~aA~~l~~~g~~v~lie~~~~~gg~~~~ 59 (352)
T PRK12770 31 LAAAGYLACLGYEVHVYDKLPEPGGLMLF 59 (352)
T ss_pred HHHHHHHHHCCCcEEEEeCCCCCCceeee
Confidence 57899999999999999999999998753
No 157
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=95.00 E-value=0.016 Score=41.40 Aligned_cols=23 Identities=30% Similarity=0.378 Sum_probs=20.1
Q ss_pred hHHHHhhCCCcEEEEeeCCCcCc
Q 034688 3 TAVELLDQGHEVDIYELRSFIGG 25 (87)
Q Consensus 3 aA~~L~~~G~~V~v~E~~~~~GG 25 (87)
+||+|+++|++|+|+|+...+|+
T Consensus 1 ~A~~La~~G~~V~vlE~~~~~~~ 23 (381)
T TIGR03197 1 TAYSLARRGWQVTLYEQDEAPAQ 23 (381)
T ss_pred ChHHHHhCCCeeEEEeCCCcccc
Confidence 69999999999999999766654
No 158
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=94.97 E-value=0.037 Score=42.75 Aligned_cols=47 Identities=15% Similarity=0.146 Sum_probs=34.3
Q ss_pred ChhHHHHhh-CCCcEEEEeeCCCc--CceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCce
Q 034688 1 MSTAVELLD-QGHEVDIYELRSFI--GGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENL 65 (87)
Q Consensus 1 L~aA~~L~~-~G~~V~v~E~~~~~--GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l 65 (87)
|++|..|++ .|++|+|+|+++.. .|++- | + .++.+++++++|+.+.+
T Consensus 45 L~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~------------g---l---~prtleiL~~lGl~d~l 94 (634)
T PRK08294 45 LTLAAQLSAFPDITTRIVERKPGRLELGQAD------------G---I---ACRTMEMFQAFGFAERI 94 (634)
T ss_pred HHHHHHHhcCCCCcEEEEEcCCCCCCCCeee------------E---E---ChHHHHHHHhccchHHH
Confidence 689999999 59999999988643 12211 1 1 37889999999987654
No 159
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=94.93 E-value=0.021 Score=41.40 Aligned_cols=24 Identities=21% Similarity=0.109 Sum_probs=20.9
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcC
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIG 24 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~G 24 (87)
++||+.|+++|++|+|+|++...+
T Consensus 13 ~~aA~~la~~G~~V~llE~~~~~~ 36 (398)
T TIGR02028 13 ASAAETLASAGIQTFLLERKPDNA 36 (398)
T ss_pred HHHHHHHHhCCCcEEEEecCCCCC
Confidence 479999999999999999986644
No 160
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=94.88 E-value=0.023 Score=41.78 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=23.2
Q ss_pred ChhHHHHhhCCCcEEEEeeCCC--cCceE
Q 034688 1 MSTAVELLDQGHEVDIYELRSF--IGGKV 27 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~--~GG~~ 27 (87)
|+||+.++++|.+|+|+||.+. .||..
T Consensus 17 l~AA~~aa~~G~~V~vlEk~~~~~~GG~s 45 (466)
T PRK08274 17 LCAALAAREAGASVLLLEAAPREWRGGNS 45 (466)
T ss_pred HHHHHHHHHCCCeEEEEeCCCCcCCCccc
Confidence 5899999999999999999985 67743
No 161
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=94.88 E-value=0.022 Score=43.47 Aligned_cols=28 Identities=36% Similarity=0.510 Sum_probs=25.3
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVA 28 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~ 28 (87)
|+||...+++|.+|+|+||.+.+||.+.
T Consensus 28 ~~aA~~a~~~G~~v~v~Ek~~~~GG~~~ 55 (564)
T PRK12845 28 MAAALAAHELGLSVLIVEKSSYVGGSTA 55 (564)
T ss_pred HHHHHHHHHCCCcEEEEecCCCCcCccc
Confidence 5789999999999999999999999664
No 162
>PRK13748 putative mercuric reductase; Provisional
Probab=94.87 E-value=0.02 Score=42.98 Aligned_cols=27 Identities=33% Similarity=0.553 Sum_probs=24.4
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVA 28 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~ 28 (87)
++||..|++.|.+|.|+|+. .+||-|.
T Consensus 111 ~~aA~~~~~~G~~v~lie~~-~~GG~c~ 137 (561)
T PRK13748 111 MAAALKAVEQGARVTLIERG-TIGGTCV 137 (561)
T ss_pred HHHHHHHHhCCCeEEEEecC-cceeecc
Confidence 47999999999999999987 8999874
No 163
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=94.84 E-value=0.023 Score=43.09 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=24.2
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceE
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKV 27 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~ 27 (87)
|+||..++++|.+|+|+|+.+.+||.+
T Consensus 20 ~~aA~~aa~~G~~v~llEk~~~~gG~~ 46 (557)
T PRK07843 20 MVAALTAAHRGLSTVVVEKAPHYGGST 46 (557)
T ss_pred HHHHHHHHHCCCCEEEEeCCCCCCccc
Confidence 579999999999999999999998844
No 164
>PRK12839 hypothetical protein; Provisional
Probab=94.82 E-value=0.024 Score=43.30 Aligned_cols=28 Identities=36% Similarity=0.342 Sum_probs=25.5
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVA 28 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~ 28 (87)
|+||+.|+++|.+|+|+|+...+||.+.
T Consensus 21 ~~aa~~~~~~g~~v~~iek~~~~gg~~~ 48 (572)
T PRK12839 21 LSAAVAAAYGGAKVLVVEKASTCGGATA 48 (572)
T ss_pred HHHHHHHHHCCCcEEEEecCCCCCcccc
Confidence 5789999999999999999999999764
No 165
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=94.75 E-value=0.023 Score=41.91 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=19.4
Q ss_pred ChhHHHHhhC--CCcEEEEeeCCC
Q 034688 1 MSTAVELLDQ--GHEVDIYELRSF 22 (87)
Q Consensus 1 L~aA~~L~~~--G~~V~v~E~~~~ 22 (87)
|++|++|+++ |.+|+|+|+...
T Consensus 37 ls~A~~La~~~~G~~V~vlE~~~~ 60 (460)
T TIGR03329 37 LWTAIMIKQQRPALDVLVLEADLC 60 (460)
T ss_pred HHHHHHHHHhCCCCeEEEEeCCcc
Confidence 5899999998 999999999654
No 166
>PRK14694 putative mercuric reductase; Provisional
Probab=94.70 E-value=0.027 Score=41.65 Aligned_cols=27 Identities=30% Similarity=0.500 Sum_probs=24.1
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVA 28 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~ 28 (87)
++||..|++.|++|+|+|+. .+||-|.
T Consensus 19 ~~aA~~l~~~g~~v~lie~~-~~GGtc~ 45 (468)
T PRK14694 19 MAAALKATERGARVTLIERG-TIGGTCV 45 (468)
T ss_pred HHHHHHHHhCCCcEEEEEcc-cccccee
Confidence 57999999999999999986 7999775
No 167
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=94.55 E-value=0.03 Score=42.67 Aligned_cols=28 Identities=32% Similarity=0.368 Sum_probs=25.3
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVA 28 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~ 28 (87)
|+||+.++++|.+|+|+|+.+.+||.+.
T Consensus 25 ~~aa~~~~~~g~~v~~iek~~~~gg~~~ 52 (581)
T PRK06134 25 LSAAVTAAWHGLKVIVVEKDPVFGGTTA 52 (581)
T ss_pred HHHHHHHHHCCCeEEEEecCCCCCcccc
Confidence 5789999999999999999999999764
No 168
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=94.55 E-value=0.037 Score=41.88 Aligned_cols=39 Identities=26% Similarity=0.343 Sum_probs=30.4
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEe
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIE 39 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d 39 (87)
|+||.+|++.|.+|.|+|++.+.||-+-+...-.|+-++
T Consensus 27 L~aaayl~r~g~~V~vlerrhv~gGaavteeivpGfKfs 65 (561)
T KOG4254|consen 27 LTAAAYLARYGQSVAVLERRHVIGGAAVTEEIVPGFKFS 65 (561)
T ss_pred hhHHHHHHhcCcceEEEEEeeecCcceeeehhccccccc
Confidence 689999999999999999999999977664322344433
No 169
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=94.54 E-value=0.028 Score=40.03 Aligned_cols=23 Identities=17% Similarity=0.249 Sum_probs=20.7
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCc
Q 034688 1 MSTAVELLDQGHEVDIYELRSFI 23 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~ 23 (87)
|++|+.|+++|++|+|+|+.+.+
T Consensus 20 l~~A~~L~~~G~~v~liE~~~~~ 42 (388)
T PRK07494 20 LAAAIALARAGASVALVAPEPPY 42 (388)
T ss_pred HHHHHHHhcCCCeEEEEeCCCCC
Confidence 58999999999999999998764
No 170
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=94.34 E-value=0.035 Score=42.33 Aligned_cols=28 Identities=32% Similarity=0.398 Sum_probs=25.3
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVA 28 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~ 28 (87)
|+||..++++|.+|+|+|+.+.+||.+.
T Consensus 29 ~~aa~~~~~~g~~v~l~ek~~~~gg~~~ 56 (578)
T PRK12843 29 MSAALFAAIAGLKVLLVERTEYVGGTTA 56 (578)
T ss_pred HHHHHHHHHCCCcEEEEecCCCCCCccc
Confidence 4789999999999999999999999764
No 171
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=94.32 E-value=0.036 Score=39.84 Aligned_cols=20 Identities=25% Similarity=0.200 Sum_probs=18.8
Q ss_pred ChhHHHHhhCCCcEEEEeeC
Q 034688 1 MSTAVELLDQGHEVDIYELR 20 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~ 20 (87)
++||+.|+++|++|+|+|++
T Consensus 13 ~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 13 ATAAETLARAGIETILLERA 32 (388)
T ss_pred HHHHHHHHhCCCcEEEEECC
Confidence 57999999999999999998
No 172
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=94.18 E-value=0.041 Score=42.09 Aligned_cols=26 Identities=23% Similarity=0.403 Sum_probs=24.0
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCce
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGK 26 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~ 26 (87)
|+||..++++|.+|+|+||.+..||.
T Consensus 24 l~AA~~aae~G~~VivlEk~~~~gG~ 49 (584)
T PRK12835 24 MTAALTAAARGLDTLVVEKSAHFGGS 49 (584)
T ss_pred HHHHHHHHHCCCcEEEEEcCCCCCch
Confidence 57999999999999999999999984
No 173
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=94.14 E-value=0.043 Score=40.08 Aligned_cols=27 Identities=26% Similarity=0.342 Sum_probs=23.1
Q ss_pred ChhHHHHhhCCCcEEEEeeCCC--cCceE
Q 034688 1 MSTAVELLDQGHEVDIYELRSF--IGGKV 27 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~--~GG~~ 27 (87)
|+||..++++|.+|+|+||.+. .||-.
T Consensus 9 l~AA~~Aa~~Ga~V~vlEK~~~~~~Gg~s 37 (432)
T TIGR02485 9 LCAAIEARRAGASVLLLEAAPRARRGGNA 37 (432)
T ss_pred HHHHHHHHhCCCcEEEEeCCCCCcCCcCc
Confidence 5799999999999999999985 56644
No 174
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=94.03 E-value=0.045 Score=41.07 Aligned_cols=25 Identities=16% Similarity=0.166 Sum_probs=21.9
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCc
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGG 25 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG 25 (87)
+++|++|+++|++|+|+|+.+..+|
T Consensus 19 ~~~A~~la~rGl~V~LvEk~d~~~G 43 (508)
T PRK12266 19 AGIARDAAGRGLSVLLCEQDDLASA 43 (508)
T ss_pred HHHHHHHHHCCCeEEEEecCCCCCC
Confidence 4789999999999999999876655
No 175
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=93.92 E-value=0.048 Score=41.31 Aligned_cols=25 Identities=16% Similarity=0.112 Sum_probs=20.9
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCc
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGG 25 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG 25 (87)
+++|++|+++|++|+|+|+.+-.+|
T Consensus 19 ~~iA~~La~rG~~V~LlEk~d~~~G 43 (546)
T PRK11101 19 AGIARDCALRGLRCILVERHDIATG 43 (546)
T ss_pred HHHHHHHHHcCCeEEEEECCCCCCC
Confidence 4789999999999999999764433
No 176
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.88 E-value=0.052 Score=40.60 Aligned_cols=25 Identities=20% Similarity=0.235 Sum_probs=21.6
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCc
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGG 25 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG 25 (87)
+++|++|+++|++|+|+|+.+-.+|
T Consensus 19 ~~~A~~la~rG~~V~LlEk~d~~~G 43 (502)
T PRK13369 19 AGIARDAAGRGLKVLLCEKDDLAQG 43 (502)
T ss_pred HHHHHHHHhCCCcEEEEECCCCCCC
Confidence 4799999999999999999975544
No 177
>PTZ00052 thioredoxin reductase; Provisional
Probab=93.87 E-value=0.053 Score=40.61 Aligned_cols=29 Identities=24% Similarity=0.471 Sum_probs=24.1
Q ss_pred ChhHHHHhhCCCcEEEEeeCC--------CcCceEEE
Q 034688 1 MSTAVELLDQGHEVDIYELRS--------FIGGKVAS 29 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~--------~~GG~~~s 29 (87)
++||..|+++|.+|+|+|+.+ .+||.|-.
T Consensus 18 ~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n 54 (499)
T PTZ00052 18 MAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVN 54 (499)
T ss_pred HHHHHHHHhCCCeEEEEeccCCCCccccccccceecc
Confidence 579999999999999999631 59998843
No 178
>PRK10262 thioredoxin reductase; Provisional
Probab=93.78 E-value=0.055 Score=37.81 Aligned_cols=28 Identities=14% Similarity=0.075 Sum_probs=24.0
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEE
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVAS 29 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s 29 (87)
|+||..|++.|++|+|+|+. .+||.+..
T Consensus 19 l~aA~~l~~~g~~~~~ie~~-~~gg~~~~ 46 (321)
T PRK10262 19 YTAAVYAARANLQPVLITGM-EKGGQLTT 46 (321)
T ss_pred HHHHHHHHHCCCCeEEEEee-cCCCceec
Confidence 68999999999999999954 78997754
No 179
>PTZ00058 glutathione reductase; Provisional
Probab=93.68 E-value=0.053 Score=41.48 Aligned_cols=28 Identities=21% Similarity=0.386 Sum_probs=24.2
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEE
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVAS 29 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s 29 (87)
++||..+++.|.+|+|+|+. .+||.|-.
T Consensus 61 ~~aA~~aa~~G~~ValIEk~-~~GGtCln 88 (561)
T PTZ00058 61 MAAARRAARNKAKVALVEKD-YLGGTCVN 88 (561)
T ss_pred HHHHHHHHHcCCeEEEEecc-cccccccc
Confidence 36899999999999999986 79998743
No 180
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=93.65 E-value=0.057 Score=40.00 Aligned_cols=29 Identities=21% Similarity=0.328 Sum_probs=25.1
Q ss_pred ChhHHHHhhCCCcEEEEee------CCCcCceEEE
Q 034688 1 MSTAVELLDQGHEVDIYEL------RSFIGGKVAS 29 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~------~~~~GG~~~s 29 (87)
++||.+|++.|.+|+|+|+ ...+||.|..
T Consensus 17 ~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n 51 (475)
T PRK06327 17 YVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLN 51 (475)
T ss_pred HHHHHHHHhCCCeEEEEecccCCCCCCCcCCcccc
Confidence 5799999999999999998 4688998854
No 181
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=93.49 E-value=0.056 Score=40.49 Aligned_cols=24 Identities=13% Similarity=0.134 Sum_probs=20.9
Q ss_pred ChhHHHHhhC--CCcEEEEeeCCCcC
Q 034688 1 MSTAVELLDQ--GHEVDIYELRSFIG 24 (87)
Q Consensus 1 L~aA~~L~~~--G~~V~v~E~~~~~G 24 (87)
+++|++|++. |.+|+|+|+.+.+|
T Consensus 13 ~a~A~~L~~~~~g~~V~VlEk~~~~a 38 (483)
T TIGR01320 13 ATLGVLLRELEPNWSITLIERLDAVA 38 (483)
T ss_pred HHHHHHHHHhCCCCeEEEEEcCCcch
Confidence 4799999997 99999999987655
No 182
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=93.47 E-value=0.061 Score=40.10 Aligned_cols=25 Identities=28% Similarity=0.251 Sum_probs=21.5
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCc
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGG 25 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG 25 (87)
+.||+.|++.|++|+|+|+++.++-
T Consensus 13 leaA~~LAr~G~~V~LiE~rp~~~~ 37 (433)
T TIGR00137 13 SEAAWQLAQAGVPVILYEMRPEKLT 37 (433)
T ss_pred HHHHHHHHhCCCcEEEEeccccccC
Confidence 4689999999999999998877544
No 183
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=93.44 E-value=0.055 Score=38.16 Aligned_cols=28 Identities=21% Similarity=0.415 Sum_probs=25.1
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVA 28 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~ 28 (87)
|-+|..|+++|++|+++|+.+++||...
T Consensus 149 le~A~~~~~~G~~v~l~e~~~~~~~~~~ 176 (415)
T COG0446 149 LEAAEAAAKRGKKVTLIEAADRLGGQLL 176 (415)
T ss_pred HHHHHHHHHcCCeEEEEEcccccchhhh
Confidence 4578999999999999999999999764
No 184
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=93.37 E-value=0.069 Score=39.54 Aligned_cols=28 Identities=21% Similarity=0.284 Sum_probs=23.9
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEE
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVAS 29 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s 29 (87)
++||..|++.|.+|+|+|+. .+||.|..
T Consensus 14 ~~~a~~~~~~g~~v~~~e~~-~~gG~c~~ 41 (466)
T PRK07845 14 YEAALVAAQLGADVTVIERD-GLGGAAVL 41 (466)
T ss_pred HHHHHHHHhCCCeEEEEEcc-CCCCcccc
Confidence 46899999999999999986 48998843
No 185
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=93.34 E-value=0.064 Score=39.54 Aligned_cols=27 Identities=19% Similarity=0.338 Sum_probs=22.9
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVA 28 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~ 28 (87)
++||..|++.|.+|+|+|+. .+||-|-
T Consensus 13 ~~aA~~~~~~g~~V~lie~~-~~GG~c~ 39 (458)
T PRK06912 13 YVAAITAAQNGKNVTLIDEA-DLGGTCL 39 (458)
T ss_pred HHHHHHHHhCCCcEEEEECC-cccccCC
Confidence 47899999999999999986 5787663
No 186
>PLN02507 glutathione reductase
Probab=93.30 E-value=0.082 Score=39.65 Aligned_cols=29 Identities=28% Similarity=0.276 Sum_probs=24.7
Q ss_pred ChhHHHHhhCCCcEEEEee---------CCCcCceEEE
Q 034688 1 MSTAVELLDQGHEVDIYEL---------RSFIGGKVAS 29 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~---------~~~~GG~~~s 29 (87)
++||..+++.|.+|+|+|+ .+.+||.|--
T Consensus 38 ~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n 75 (499)
T PLN02507 38 VRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVI 75 (499)
T ss_pred HHHHHHHHHCCCeEEEEeccCcccccccCCCccceeec
Confidence 4789999999999999996 4679999843
No 187
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=93.25 E-value=0.07 Score=38.37 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=18.7
Q ss_pred ChhHHHHhhC-CC-cEEEEeeCCC
Q 034688 1 MSTAVELLDQ-GH-EVDIYELRSF 22 (87)
Q Consensus 1 L~aA~~L~~~-G~-~V~v~E~~~~ 22 (87)
+++|++|+++ |. +|+|+|++.-
T Consensus 43 ~s~A~~L~~~~g~~~V~vle~~~~ 66 (407)
T TIGR01373 43 LATAYYLAKEHGITNVAVLEKGWL 66 (407)
T ss_pred HHHHHHHHHhcCCCeEEEEEcccc
Confidence 5899999995 95 9999999863
No 188
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=93.15 E-value=0.07 Score=39.63 Aligned_cols=22 Identities=23% Similarity=0.090 Sum_probs=19.5
Q ss_pred ChhHHHHhhCCCcEEEEeeCCC
Q 034688 1 MSTAVELLDQGHEVDIYELRSF 22 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~ 22 (87)
++||+.|+++|++|+|+|++..
T Consensus 52 ~~aA~~LA~~G~~VlllEr~~~ 73 (450)
T PLN00093 52 ACAAETLAKGGIETFLIERKLD 73 (450)
T ss_pred HHHHHHHHhCCCcEEEEecCCC
Confidence 4789999999999999999853
No 189
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=93.09 E-value=0.067 Score=41.87 Aligned_cols=21 Identities=19% Similarity=0.294 Sum_probs=19.5
Q ss_pred ChhHHHHhhCCCcEEEEeeCC
Q 034688 1 MSTAVELLDQGHEVDIYELRS 21 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~ 21 (87)
|++|..|+++|++|+|||+++
T Consensus 94 LalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 94 LVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred HHHHHHHHhcCCeEEEEeccc
Confidence 689999999999999999975
No 190
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=93.06 E-value=0.21 Score=36.97 Aligned_cols=80 Identities=20% Similarity=0.302 Sum_probs=62.7
Q ss_pred HHHHhhCCCcEEEEeeCCCcCceEEEEecc---------------C----CeEEeeeeEEEeCCChHHHHHHHHcCCCCc
Q 034688 4 AVELLDQGHEVDIYELRSFIGGKVASFVCK---------------R----GNHIEISLHVFFGCYNNLFRLTKKVGADEN 64 (87)
Q Consensus 4 A~~L~~~G~~V~v~E~~~~~GG~~~s~~~~---------------~----g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~ 64 (87)
+..|+-+|.+|+.+|+++.-|+-.+|.+.. . .+-+|+-|..++++. .+..++-+.++...
T Consensus 22 s~~Ls~~~k~VlhiD~Nd~YG~~~asltl~ql~~~~~~~~~~p~k~~~drd~~iDL~PK~l~A~s-~l~~iLi~t~v~~Y 100 (434)
T COG5044 22 SAALSWDGKNVLHIDKNDYYGSTSASLTLTQLEKYFDECEKRPSKGGGDRDLNIDLIPKFLFANS-ELLKILIETGVTEY 100 (434)
T ss_pred HHHhhhcCceEEEEeCCCccCccccceeHHHHHHHhhhhhccccccccccccchhhchhhhcccc-hHHHHHHHhChHhh
Confidence 446778899999999999999998887410 0 245777787776654 68889999999999
Q ss_pred eeeeCceeeEEccCCeEEEE
Q 034688 65 LLMKDHTHKFVNKGGEIGGI 84 (87)
Q Consensus 65 l~~~~~~~~~~~~~g~~~~~ 84 (87)
+.+.+-+.+|.++.|++..+
T Consensus 101 Lefk~i~~~~~~~~~k~~kV 120 (434)
T COG5044 101 LEFKQISGSFLYRPGKIYKV 120 (434)
T ss_pred eeeeeccccEEecCCcEEEC
Confidence 99888888888888776653
No 191
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=93.06 E-value=0.083 Score=38.15 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=23.0
Q ss_pred ChhHHHHhhC--CCcEEEEeeCCCcCce
Q 034688 1 MSTAVELLDQ--GHEVDIYELRSFIGGK 26 (87)
Q Consensus 1 L~aA~~L~~~--G~~V~v~E~~~~~GG~ 26 (87)
|++|+.|+++ |++|+|+|+.+..||.
T Consensus 12 l~lA~~L~~~~~g~~V~lle~~~~~~~~ 39 (370)
T TIGR01789 12 GLIALRLQRARPDFRIRVIEAGRTIGGN 39 (370)
T ss_pred HHHHHHHHhcCCCCeEEEEeCCCCCCCc
Confidence 5789999987 9999999999988873
No 192
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=92.93 E-value=0.088 Score=39.86 Aligned_cols=27 Identities=15% Similarity=0.101 Sum_probs=23.5
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceE
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKV 27 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~ 27 (87)
|+||..++++|.+|+|+||.+..||..
T Consensus 12 l~AA~~aae~G~~V~lleK~~~~~g~s 38 (566)
T TIGR01812 12 LRAAVEAAKAGLNTAVISKVYPTRSHT 38 (566)
T ss_pred HHHHHHHHHCCCcEEEEeccCCCCCcc
Confidence 579999999999999999998877643
No 193
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=92.86 E-value=0.092 Score=39.24 Aligned_cols=24 Identities=29% Similarity=0.486 Sum_probs=21.0
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcC
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIG 24 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~G 24 (87)
+.||+.|++.|++|+|+|+++...
T Consensus 15 leAAlaLAr~Gl~V~LiE~rp~~~ 38 (436)
T PRK05335 15 SEAAWQLAKRGVPVELYEMRPVKK 38 (436)
T ss_pred HHHHHHHHhCCCcEEEEEccCccC
Confidence 479999999999999999877654
No 194
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=92.50 E-value=0.1 Score=40.30 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=21.7
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCc
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGG 25 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG 25 (87)
.++|++|+++|++|+|+|+.+-.+|
T Consensus 84 a~~A~~lA~rGl~V~LvE~~d~a~G 108 (627)
T PLN02464 84 AGVALDAATRGLRVGLVEREDFSSG 108 (627)
T ss_pred HHHHHHHHhCCCEEEEEeccccCCC
Confidence 3789999999999999999966555
No 195
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=92.27 E-value=0.13 Score=39.41 Aligned_cols=25 Identities=20% Similarity=0.097 Sum_probs=23.1
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCc
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGG 25 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG 25 (87)
+++|+.|+++|++|+|+|+....||
T Consensus 13 ~~~a~~l~~~g~~v~~~e~~~~~~~ 37 (544)
T TIGR02462 13 CTYARLCVDAGLKVAMVEIGAADSF 37 (544)
T ss_pred HHHHHHHHHCCCeEEEEeccCccCC
Confidence 4689999999999999999999986
No 196
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=92.17 E-value=0.15 Score=38.31 Aligned_cols=27 Identities=22% Similarity=0.283 Sum_probs=23.6
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEE
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVAS 29 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s 29 (87)
|+||.+|++.|++|+|+|. ++||.+..
T Consensus 224 l~aA~~la~~G~~v~li~~--~~GG~~~~ 250 (517)
T PRK15317 224 AAAAIYAARKGIRTGIVAE--RFGGQVLD 250 (517)
T ss_pred HHHHHHHHHCCCcEEEEec--CCCCeeec
Confidence 5899999999999999985 59998853
No 197
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=92.13 E-value=0.12 Score=38.80 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=23.0
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVA 28 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~ 28 (87)
|+||.+|++.|++|+|+|. ++||.+.
T Consensus 225 l~AA~~la~~G~~v~li~~--~~GG~~~ 250 (515)
T TIGR03140 225 AAAAIYAARKGLRTAMVAE--RIGGQVK 250 (515)
T ss_pred HHHHHHHHHCCCcEEEEec--CCCCccc
Confidence 5899999999999999984 6999875
No 198
>PRK07804 L-aspartate oxidase; Provisional
Probab=91.94 E-value=0.14 Score=38.76 Aligned_cols=25 Identities=16% Similarity=0.234 Sum_probs=22.9
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCc
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGG 25 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG 25 (87)
|+||..++++|.+|+|+||.+..||
T Consensus 29 l~AAi~aae~G~~VilleK~~~~~g 53 (541)
T PRK07804 29 LTAALAARRAGRRVLVVTKAALDDG 53 (541)
T ss_pred HHHHHHHHHcCCeEEEEEccCCCCC
Confidence 5799999999999999999998876
No 199
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=91.87 E-value=0.21 Score=37.46 Aligned_cols=29 Identities=21% Similarity=0.306 Sum_probs=26.2
Q ss_pred hhHHHHhhCCCcEEEEeeCCCcCceEEEE
Q 034688 2 STAVELLDQGHEVDIYELRSFIGGKVASF 30 (87)
Q Consensus 2 ~aA~~L~~~G~~V~v~E~~~~~GG~~~s~ 30 (87)
+||.++++.|.+|.++|+.+.+||-|--+
T Consensus 18 ~aA~raa~~G~kvalvE~~~~lGGtCln~ 46 (454)
T COG1249 18 VAAIRAAQLGLKVALVEKGERLGGTCLNV 46 (454)
T ss_pred HHHHHHHhCCCCEEEEeecCCcCceEEee
Confidence 68999999999999999999999988654
No 200
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=91.70 E-value=0.28 Score=36.58 Aligned_cols=78 Identities=22% Similarity=0.322 Sum_probs=61.1
Q ss_pred HHhhCCCcEEEEeeCCCcCceEEEEecc--------------------CCeEEeeeeEEEeCCChHHHHHHHHcCCCCce
Q 034688 6 ELLDQGHEVDIYELRSFIGGKVASFVCK--------------------RGNHIEISLHVFFGCYNNLFRLTKKVGADENL 65 (87)
Q Consensus 6 ~L~~~G~~V~v~E~~~~~GG~~~s~~~~--------------------~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l 65 (87)
.|+.+|.+|+.+|+++.-||-.+|.+.. ..+-+|+-|..++++. .+.+++-+.++...+
T Consensus 22 ~Ls~~gkkVLhiDrN~yYG~~sasltl~ql~~~f~~~~~~~~~~~~~~rd~nvDLiPK~lmAn~-~Lvk~Li~T~V~~YL 100 (440)
T KOG1439|consen 22 ALSVDGKKVLHIDRNDYYGGESASLTLEQLYKKFKKVSEKPPEKLGRDRDWNVDLIPKFLMANG-ELVKILIHTGVTRYL 100 (440)
T ss_pred eeeecCcEEEEEeCCCCCCccccceeHHHHHHHhccccccCccccccccccchhhchHhhhccc-hHHHHHHHhchhhhe
Confidence 4678899999999999999999887410 0244677777666554 588889999999999
Q ss_pred eeeCceeeEEccCCeEEEE
Q 034688 66 LMKDHTHKFVNKGGEIGGI 84 (87)
Q Consensus 66 ~~~~~~~~~~~~~g~~~~~ 84 (87)
.++.-..+|.+++|++..+
T Consensus 101 ~fk~i~gsfv~~~~k~~KV 119 (440)
T KOG1439|consen 101 EFKSISGSFVYKKGKIYKV 119 (440)
T ss_pred EEEeecceEEEECCeEEEC
Confidence 9988888888888877653
No 201
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=91.68 E-value=0.15 Score=39.08 Aligned_cols=26 Identities=15% Similarity=0.368 Sum_probs=23.1
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCce
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGK 26 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~ 26 (87)
|+||..++++|.+|+|+||.+..||.
T Consensus 16 l~AAi~Aa~~G~~V~lieK~~~~~g~ 41 (589)
T PRK08641 16 LMATIKAAEAGVHVDLFSLVPVKRSH 41 (589)
T ss_pred HHHHHHHHHcCCcEEEEEccCCCCCc
Confidence 57999999999999999999987763
No 202
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=91.67 E-value=0.14 Score=42.23 Aligned_cols=27 Identities=30% Similarity=0.398 Sum_probs=24.7
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceE
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKV 27 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~ 27 (87)
|+||...+++|.+|+|+||.+..||.+
T Consensus 422 l~AAi~Aae~Ga~VivlEK~~~~GG~s 448 (1167)
T PTZ00306 422 CSAAIEAASCGAQVILLEKEAKLGGNS 448 (1167)
T ss_pred HHHHHHHHHCCCcEEEEEccCCCCCch
Confidence 579999999999999999999999965
No 203
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=91.64 E-value=0.18 Score=37.37 Aligned_cols=28 Identities=18% Similarity=0.298 Sum_probs=24.5
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVA 28 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~ 28 (87)
|-||..++++|++|+|+|+.+.+|=++.
T Consensus 16 lMaA~~aa~~G~~V~lid~~~k~GrKil 43 (408)
T COG2081 16 LMAAISAAKAGRRVLLIDKGPKLGRKIL 43 (408)
T ss_pred HHHHHHHhhcCCEEEEEecCccccceeE
Confidence 4689999999999999999999986654
No 204
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=91.62 E-value=0.18 Score=36.99 Aligned_cols=27 Identities=26% Similarity=0.302 Sum_probs=22.7
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceE
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKV 27 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~ 27 (87)
|+||++|+|+|.++.++|+.+-+==+.
T Consensus 20 ~stAyeLaK~g~killLeqf~~ph~~G 46 (399)
T KOG2820|consen 20 LSTAYELAKRGDKILLLEQFPLPHSRG 46 (399)
T ss_pred hHHHHHHHhcCCeEEEEeccCCCcccC
Confidence 689999999999999999987654333
No 205
>PLN02546 glutathione reductase
Probab=91.49 E-value=0.16 Score=38.82 Aligned_cols=29 Identities=17% Similarity=0.196 Sum_probs=23.6
Q ss_pred ChhHHHHhhCCCcEEEEee---------CCCcCceEEE
Q 034688 1 MSTAVELLDQGHEVDIYEL---------RSFIGGKVAS 29 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~---------~~~~GG~~~s 29 (87)
+.||..+++.|.+|+|+|+ ...+||-|--
T Consensus 92 ~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n 129 (558)
T PLN02546 92 VRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVL 129 (558)
T ss_pred HHHHHHHHHCCCeEEEEeccccccccccCCCccCcccC
Confidence 3689999999999999996 3568887743
No 206
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=91.48 E-value=0.17 Score=37.92 Aligned_cols=28 Identities=11% Similarity=0.274 Sum_probs=23.6
Q ss_pred hhHHHHhhC-CCcEEEEeeC--------CCcCceEEE
Q 034688 2 STAVELLDQ-GHEVDIYELR--------SFIGGKVAS 29 (87)
Q Consensus 2 ~aA~~L~~~-G~~V~v~E~~--------~~~GG~~~s 29 (87)
+||..+++. |.+|.|+|+. +.+||-|-.
T Consensus 17 ~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln 53 (486)
T TIGR01423 17 EAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVN 53 (486)
T ss_pred HHHHHHHHhcCCEEEEEecccCccccccCCccCeecC
Confidence 688999996 9999999984 579998844
No 207
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=91.44 E-value=0.25 Score=38.15 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=22.3
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCc
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGG 25 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG 25 (87)
|+||..++++|.+|+|+|+.+..||
T Consensus 21 l~AAl~Aae~G~~V~lieK~~~~~g 45 (626)
T PRK07803 21 LRAAIEARERGLRVAVVCKSLFGKA 45 (626)
T ss_pred HHHHHHHHHCCCCEEEEeccCCCCC
Confidence 5799999999999999999987665
No 208
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=91.28 E-value=0.13 Score=38.73 Aligned_cols=27 Identities=7% Similarity=0.044 Sum_probs=22.1
Q ss_pred ChhHHHHhhC--CCcEEEEeeCCCcCceE
Q 034688 1 MSTAVELLDQ--GHEVDIYELRSFIGGKV 27 (87)
Q Consensus 1 L~aA~~L~~~--G~~V~v~E~~~~~GG~~ 27 (87)
+++|++|++. |.+|+|+||.+.+|...
T Consensus 18 ~slA~~L~~~~~g~~V~VlEk~~~~a~~s 46 (494)
T PRK05257 18 ATLGTLLKELEPEWSITMFERLDGVALES 46 (494)
T ss_pred HHHHHHHHHhCCCCeEEEEEcCCchhhhc
Confidence 4789999984 78999999998776543
No 209
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=91.14 E-value=0.23 Score=37.17 Aligned_cols=70 Identities=16% Similarity=0.128 Sum_probs=40.5
Q ss_pred hhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCceeeeCce---eeEEccC
Q 034688 2 STAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENLLMKDHT---HKFVNKG 78 (87)
Q Consensus 2 ~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l~~~~~~---~~~~~~~ 78 (87)
+.|+.|++.|.+|+|+||.-.-=-|+- |-. -+|.-...++++|+++.+.-.+.+ ..-..++
T Consensus 59 aLa~~L~kdGRrVhVIERDl~EPdRiv------GEl----------lQPGG~~~L~~LGl~Dcve~IDAQ~v~Gy~ifk~ 122 (509)
T KOG1298|consen 59 ALAYALAKDGRRVHVIERDLSEPDRIV------GEL----------LQPGGYLALSKLGLEDCVEGIDAQRVTGYAIFKD 122 (509)
T ss_pred HHHHHHhhCCcEEEEEecccccchHHH------HHh----------cCcchhHHHHHhCHHHHhhcccceEeeeeEEEeC
Confidence 468999999999999997542111110 000 023334577888988754433322 2222357
Q ss_pred CeEEEEecC
Q 034688 79 GEIGGIVIS 87 (87)
Q Consensus 79 g~~~~~~~~ 87 (87)
|+-..+..|
T Consensus 123 gk~v~~pyP 131 (509)
T KOG1298|consen 123 GKEVDLPYP 131 (509)
T ss_pred CceeeccCC
Confidence 777766655
No 210
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=91.07 E-value=0.24 Score=37.88 Aligned_cols=26 Identities=19% Similarity=0.225 Sum_probs=23.7
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCce
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGK 26 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~ 26 (87)
|+||..++++|.+|+|+||....||.
T Consensus 1 l~AAl~aa~~G~~V~lveK~~~~~g~ 26 (570)
T PRK05675 1 MRAALQLAQGGHKTAVVTKVFPTRSH 26 (570)
T ss_pred ChhHHhHHhcCCcEEEEEcCCCCCch
Confidence 78999999999999999999887774
No 211
>PRK11445 putative oxidoreductase; Provisional
Probab=91.00 E-value=0.18 Score=35.89 Aligned_cols=22 Identities=14% Similarity=-0.031 Sum_probs=19.6
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCc
Q 034688 1 MSTAVELLDQGHEVDIYELRSFI 23 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~ 23 (87)
|++|..|+++ ++|+|+|+++.+
T Consensus 14 l~~A~~La~~-~~V~liE~~~~~ 35 (351)
T PRK11445 14 SALARLLAGK-MKVIAIDKKHQC 35 (351)
T ss_pred HHHHHHHhcc-CCEEEEECCCcc
Confidence 5789999999 999999999864
No 212
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=90.90 E-value=0.21 Score=38.42 Aligned_cols=24 Identities=17% Similarity=0.178 Sum_probs=21.5
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcC
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIG 24 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~G 24 (87)
|+||..++++|.+|+|+||.+.++
T Consensus 11 l~AAl~Aae~G~~VilleK~~~~~ 34 (603)
T TIGR01811 11 GMAAAKLAELGYHVKLFSYVDAPR 34 (603)
T ss_pred HHHHHHHHHcCCCEEEEEecCCCC
Confidence 579999999999999999999664
No 213
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=90.87 E-value=0.21 Score=38.11 Aligned_cols=27 Identities=15% Similarity=0.124 Sum_probs=23.5
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceE
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKV 27 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~ 27 (87)
|+||..++++|.+|+|+||.+..||.+
T Consensus 18 l~AAl~Aae~G~~V~lveK~~~~~g~s 44 (566)
T PRK06452 18 LMSAHEIASAGFKVAVISKVFPTRSHS 44 (566)
T ss_pred HHHHHHHHHCCCcEEEEEccCCCCCcc
Confidence 579999999999999999998877743
No 214
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=90.64 E-value=0.26 Score=36.54 Aligned_cols=27 Identities=33% Similarity=0.534 Sum_probs=22.8
Q ss_pred ChhHHHHhhCCCcEEEEeeCC--CcCceE
Q 034688 1 MSTAVELLDQGHEVDIYELRS--FIGGKV 27 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~--~~GG~~ 27 (87)
|.||.+|+.+|.+|+|+|++. .+||.+
T Consensus 18 lvaa~elA~aG~~V~ildQEgeqnlGGQA 46 (552)
T COG3573 18 LVAAAELADAGKRVLILDQEGEQNLGGQA 46 (552)
T ss_pred HHHHHHHHhcCceEEEEccccccccccee
Confidence 578999999999999997765 488865
No 215
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=90.55 E-value=0.4 Score=26.86 Aligned_cols=23 Identities=26% Similarity=0.241 Sum_probs=20.6
Q ss_pred hhHHHHhhCCCcEEEEeeCCCcC
Q 034688 2 STAVELLDQGHEVDIYELRSFIG 24 (87)
Q Consensus 2 ~aA~~L~~~G~~V~v~E~~~~~G 24 (87)
-+|..|++.|.+|+|+|+++.+.
T Consensus 13 E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 13 ELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp HHHHHHHHTTSEEEEEESSSSSS
T ss_pred HHHHHHHHhCcEEEEEeccchhh
Confidence 36888899999999999999988
No 216
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=90.39 E-value=0.24 Score=38.73 Aligned_cols=28 Identities=25% Similarity=0.474 Sum_probs=24.0
Q ss_pred hhHHHHhhCCCcEEEEeeC-CCcCceEEE
Q 034688 2 STAVELLDQGHEVDIYELR-SFIGGKVAS 29 (87)
Q Consensus 2 ~aA~~L~~~G~~V~v~E~~-~~~GG~~~s 29 (87)
+||..+++.|.+|+|+|+. +.+||-|--
T Consensus 130 ~aA~~aa~~G~kV~lie~~~~~lGGtCvn 158 (659)
T PTZ00153 130 AAAINAMERGLKVIIFTGDDDSIGGTCVN 158 (659)
T ss_pred HHHHHHHHCCCcEEEEeCCCCccccceeE
Confidence 6899999999999999975 479998744
No 217
>PRK06996 hypothetical protein; Provisional
Probab=90.30 E-value=1.4 Score=31.77 Aligned_cols=50 Identities=12% Similarity=0.053 Sum_probs=32.3
Q ss_pred ChhHHHHhhCC----CcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCc
Q 034688 1 MSTAVELLDQG----HEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADEN 64 (87)
Q Consensus 1 L~aA~~L~~~G----~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~ 64 (87)
|++|..|+++| ++|+|+|+.+...- . + + +. ...-.++..++++++|+-+.
T Consensus 24 ~~~A~~L~~~g~~~g~~v~l~e~~~~~~~-------~-~---~--~r-~~~l~~~~~~~L~~lg~~~~ 77 (398)
T PRK06996 24 LALAGWLARRSATRALSIALIDAREPAAS-------A-N---D--PR-AIALSHGSRVLLETLGAWPA 77 (398)
T ss_pred HHHHHHHhcCCCcCCceEEEecCCCCCcC-------C-C---C--ce-EEEecHHHHHHHHhCCCchh
Confidence 57899999987 47999999864320 0 0 0 00 01124677889999997543
No 218
>PLN02463 lycopene beta cyclase
Probab=90.18 E-value=0.21 Score=37.17 Aligned_cols=22 Identities=14% Similarity=0.223 Sum_probs=19.7
Q ss_pred ChhHHHHhhCCCcEEEEeeCCC
Q 034688 1 MSTAVELLDQGHEVDIYELRSF 22 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~ 22 (87)
|++|..|+++|++|+|+|+++.
T Consensus 41 LalA~~La~~Gl~V~liE~~~~ 62 (447)
T PLN02463 41 LAVAQQVSEAGLSVCCIDPSPL 62 (447)
T ss_pred HHHHHHHHHCCCeEEEeccCcc
Confidence 5789999999999999999764
No 219
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=90.02 E-value=0.29 Score=36.04 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=20.2
Q ss_pred hHHHHhhCCCcEEEEeeCCCcC
Q 034688 3 TAVELLDQGHEVDIYELRSFIG 24 (87)
Q Consensus 3 aA~~L~~~G~~V~v~E~~~~~G 24 (87)
|||.++++|++|.++|.++.-+
T Consensus 18 AAwqiA~~Gv~V~L~EMRp~k~ 39 (439)
T COG1206 18 AAWQIAKRGVPVILYEMRPVKG 39 (439)
T ss_pred HHHHHHHcCCcEEEEEcccccC
Confidence 8999999999999999997655
No 220
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=90.00 E-value=0.27 Score=37.73 Aligned_cols=26 Identities=12% Similarity=0.153 Sum_probs=23.1
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCce
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGK 26 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~ 26 (87)
|+||..++++|.+|+|+||....+|.
T Consensus 20 l~AAi~Aa~~G~~V~lleK~~~~~g~ 45 (588)
T PRK08958 20 MRAALQISQSGQSCALLSKVFPTRSH 45 (588)
T ss_pred HHHHHHHHHcCCcEEEEEccCCCCCc
Confidence 57999999999999999999887763
No 221
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=89.79 E-value=0.31 Score=34.69 Aligned_cols=31 Identities=16% Similarity=0.170 Sum_probs=26.3
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEEEe
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVASFV 31 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~ 31 (87)
|+||.++++++.+++|++....+||......
T Consensus 16 l~AAiya~r~~l~~~li~~~~~~gg~~~~~~ 46 (305)
T COG0492 16 LTAAIYAARAGLKVVLILEGGEPGGQLTKTT 46 (305)
T ss_pred HHHHHHHHHcCCCcEEEEecCCcCCccccce
Confidence 6899999999999777777888888877655
No 222
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=89.68 E-value=0.3 Score=37.90 Aligned_cols=24 Identities=21% Similarity=0.213 Sum_probs=21.5
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcC
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIG 24 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~G 24 (87)
|+||..++++|.+|+|+|+...+|
T Consensus 48 l~AAi~Aae~G~~VilieK~~~~~ 71 (640)
T PRK07573 48 ASAAATLGELGYNVKVFCYQDSPR 71 (640)
T ss_pred HHHHHHHHHcCCcEEEEecCCCCC
Confidence 579999999999999999987775
No 223
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=89.63 E-value=0.3 Score=37.51 Aligned_cols=27 Identities=15% Similarity=0.145 Sum_probs=22.8
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceE
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKV 27 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~ 27 (87)
|+||..++++|.+|+|+||....+|.+
T Consensus 25 l~AAi~Aa~~G~~V~vleK~~~~~g~t 51 (591)
T PRK07057 25 MRASLQLARAGLSVAVLSKVFPTRSHT 51 (591)
T ss_pred HHHHHHHHHCCCcEEEEeccCCCCCCc
Confidence 578999999999999999987766643
No 224
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=89.44 E-value=0.31 Score=37.63 Aligned_cols=27 Identities=11% Similarity=0.073 Sum_probs=23.7
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceE
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKV 27 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~ 27 (87)
|+||..++++|.+|+|+||....||.+
T Consensus 42 l~AAi~Aa~~G~~V~lveK~~~~~g~t 68 (617)
T PTZ00139 42 LRAALGLVELGYKTACISKLFPTRSHT 68 (617)
T ss_pred HHHHHHHHHcCCcEEEEeccCCCCCCc
Confidence 579999999999999999998877743
No 225
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=89.26 E-value=0.34 Score=37.66 Aligned_cols=26 Identities=12% Similarity=0.097 Sum_probs=23.2
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCce
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGK 26 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~ 26 (87)
|+||..++++|.+|+|+||....||.
T Consensus 63 l~AAl~Aae~G~~VilveK~~~~~g~ 88 (635)
T PLN00128 63 LRAAIGLSEHGFNTACITKLFPTRSH 88 (635)
T ss_pred HHHHHHHHhcCCcEEEEEcCCCCCCc
Confidence 57999999999999999999887763
No 226
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=88.82 E-value=0.38 Score=36.98 Aligned_cols=26 Identities=4% Similarity=0.019 Sum_probs=22.6
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCce
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGK 26 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~ 26 (87)
|+||..+++.|.+|+|+||....+|.
T Consensus 25 l~AAl~Aa~~G~~V~lveK~~~~~g~ 50 (598)
T PRK09078 25 LRATLGMAEAGLKTACITKVFPTRSH 50 (598)
T ss_pred HHHHHHHHHcCCcEEEEEccCCCCcc
Confidence 57999999999999999998876663
No 227
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=88.76 E-value=0.34 Score=38.28 Aligned_cols=23 Identities=22% Similarity=0.114 Sum_probs=20.2
Q ss_pred ChhHHHHhhC--CCcEEEEeeCCCc
Q 034688 1 MSTAVELLDQ--GHEVDIYELRSFI 23 (87)
Q Consensus 1 L~aA~~L~~~--G~~V~v~E~~~~~ 23 (87)
|+||..|++. |++|+|+|+++..
T Consensus 13 LaaAi~L~~~~~G~~V~vlEr~~~~ 37 (765)
T PRK08255 13 LYFALLMKLLDPAHEVTVVERNRPY 37 (765)
T ss_pred HHHHHHHHHhCCCCeEEEEecCCCC
Confidence 5899999998 8999999998863
No 228
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=88.57 E-value=0.38 Score=36.66 Aligned_cols=27 Identities=11% Similarity=0.131 Sum_probs=23.5
Q ss_pred ChhHHHHhhCC---CcEEEEeeCCCcCceE
Q 034688 1 MSTAVELLDQG---HEVDIYELRSFIGGKV 27 (87)
Q Consensus 1 L~aA~~L~~~G---~~V~v~E~~~~~GG~~ 27 (87)
|+||..++++| .+|+|+||.+..||.+
T Consensus 18 l~AA~~Aa~~G~~~~~V~lleK~~~~~~~s 47 (577)
T PRK06069 18 LRAAVAAAERSGGKLSVAVVSKTQPMRSHS 47 (577)
T ss_pred HHHHHHHHHhCCCCCcEEEEEcccCCCCCc
Confidence 57999999998 8999999999887744
No 229
>PLN02815 L-aspartate oxidase
Probab=88.56 E-value=0.38 Score=37.13 Aligned_cols=25 Identities=20% Similarity=0.203 Sum_probs=22.5
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCce
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGK 26 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~ 26 (87)
|+||..++++| +|+|+|+.+..||.
T Consensus 42 l~AAl~Aae~G-~VvlleK~~~~gg~ 66 (594)
T PLN02815 42 LRYALEVAEYG-TVAIITKDEPHESN 66 (594)
T ss_pred HHHHHHHhhCC-CEEEEECCCCCCCc
Confidence 57999999999 99999999998883
No 230
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=88.15 E-value=0.43 Score=32.73 Aligned_cols=24 Identities=21% Similarity=0.152 Sum_probs=19.2
Q ss_pred hhHHHHhhCC-CcEEEEeeCCCcCc
Q 034688 2 STAVELLDQG-HEVDIYELRSFIGG 25 (87)
Q Consensus 2 ~aA~~L~~~G-~~V~v~E~~~~~GG 25 (87)
.+|.+|+++| .+|+|+|+.+....
T Consensus 14 v~A~rLs~~~~~~VlvlEaG~~~~~ 38 (296)
T PF00732_consen 14 VVASRLSEAGNKKVLVLEAGPRYPP 38 (296)
T ss_dssp HHHHHHTTSTTS-EEEEESSBSCTT
T ss_pred HHHHHHhhCCCCcEEEEEccccCcc
Confidence 4689999997 79999999987553
No 231
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=88.07 E-value=0.41 Score=35.74 Aligned_cols=29 Identities=24% Similarity=0.202 Sum_probs=25.5
Q ss_pred ChhHHHHhhCC--CcEEEEeeCCCcCceEEE
Q 034688 1 MSTAVELLDQG--HEVDIYELRSFIGGKVAS 29 (87)
Q Consensus 1 L~aA~~L~~~G--~~V~v~E~~~~~GG~~~s 29 (87)
+++|++|++.+ ++|+|+|+.+.+|--..+
T Consensus 16 ~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~ 46 (429)
T COG0579 16 AATAYELSEYEPDLSVALLEKEDGVAQESSS 46 (429)
T ss_pred HHHHHHHHHhCCCceEEEEEccCcccccccc
Confidence 47899999988 999999999999976655
No 232
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=88.04 E-value=0.37 Score=36.44 Aligned_cols=24 Identities=17% Similarity=0.112 Sum_probs=19.8
Q ss_pred ChhHHHHhhC-C-CcEEEEeeCCCcC
Q 034688 1 MSTAVELLDQ-G-HEVDIYELRSFIG 24 (87)
Q Consensus 1 L~aA~~L~~~-G-~~V~v~E~~~~~G 24 (87)
+++|++|++. + .+|+|+|+.+.+|
T Consensus 58 ~a~A~~La~~~~~~~V~VlEk~~~~a 83 (497)
T PTZ00383 58 TALFYTLSKFTNLKKIALIERRSDFA 83 (497)
T ss_pred HHHHHHHHhhCCCCEEEEEecCcchh
Confidence 4789999996 4 6999999997654
No 233
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=88.00 E-value=0.44 Score=35.65 Aligned_cols=28 Identities=29% Similarity=0.430 Sum_probs=23.1
Q ss_pred ChhHHHHhhCCCcEEEEeeCC--------CcCceEE
Q 034688 1 MSTAVELLDQGHEVDIYELRS--------FIGGKVA 28 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~--------~~GG~~~ 28 (87)
+.||..+++.|.+|+|+|+.. .+||-|-
T Consensus 15 ~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~ 50 (484)
T TIGR01438 15 LAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCV 50 (484)
T ss_pred HHHHHHHHHCCCeEEEEeccCCCCCCcceecccccc
Confidence 368999999999999999731 5899763
No 234
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=87.42 E-value=0.52 Score=36.76 Aligned_cols=26 Identities=12% Similarity=0.169 Sum_probs=22.8
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCce
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGK 26 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~ 26 (87)
|+||..++++|.+|+|+|+.+..+|.
T Consensus 18 l~AAi~Aae~G~~VivleK~~~~~s~ 43 (657)
T PRK08626 18 LRVAIAAAQRGLDTIVLSLVPAKRSH 43 (657)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCcc
Confidence 57999999999999999998887653
No 235
>PRK08401 L-aspartate oxidase; Provisional
Probab=87.34 E-value=0.54 Score=34.90 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=19.9
Q ss_pred ChhHHHHhhCCCcEEEEeeCCC
Q 034688 1 MSTAVELLDQGHEVDIYELRSF 22 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~ 22 (87)
|+||..++++|.+|+|+|+.+.
T Consensus 14 l~AAi~aae~G~~V~liek~~~ 35 (466)
T PRK08401 14 LTAAISLAKKGFDVTIIGPGIK 35 (466)
T ss_pred HHHHHHHHHCCCeEEEEeCCCC
Confidence 5799999999999999999864
No 236
>PRK06175 L-aspartate oxidase; Provisional
Probab=87.34 E-value=0.47 Score=34.98 Aligned_cols=25 Identities=8% Similarity=0.070 Sum_probs=21.4
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCce
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGK 26 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~ 26 (87)
|+||..++ +|.+|+|+||.+..||.
T Consensus 17 l~AA~~a~-~G~~V~lleK~~~~gg~ 41 (433)
T PRK06175 17 LYSALNLR-KDLKILMVSKGKLNECN 41 (433)
T ss_pred HHHHHHhc-cCCCEEEEecCCCCCCc
Confidence 57888874 79999999999998875
No 237
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=87.27 E-value=0.55 Score=35.04 Aligned_cols=25 Identities=32% Similarity=0.453 Sum_probs=21.9
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCce
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGK 26 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~ 26 (87)
|+||..+++.|. |+|+||.+..||.
T Consensus 15 l~AA~~aa~~G~-V~lleK~~~~~g~ 39 (488)
T TIGR00551 15 LSAALALADQGR-VIVLSKAPVTEGN 39 (488)
T ss_pred HHHHHHHHhCCC-EEEEEccCCCCCc
Confidence 579999999997 9999999887774
No 238
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=87.08 E-value=0.45 Score=34.24 Aligned_cols=23 Identities=22% Similarity=0.159 Sum_probs=20.6
Q ss_pred ChhHHHH--hhCCCcEEEEeeCCCc
Q 034688 1 MSTAVEL--LDQGHEVDIYELRSFI 23 (87)
Q Consensus 1 L~aA~~L--~~~G~~V~v~E~~~~~ 23 (87)
|++|++| ++.|.+|+|+|+++..
T Consensus 12 lslA~~l~~~~~g~~Vllid~~~~~ 36 (374)
T PF05834_consen 12 LSLARRLADARPGLSVLLIDPKPKP 36 (374)
T ss_pred HHHHHHHHhcCCCCEEEEEcCCccc
Confidence 5789999 7789999999998887
No 239
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=86.69 E-value=0.4 Score=34.71 Aligned_cols=25 Identities=28% Similarity=0.489 Sum_probs=22.6
Q ss_pred hhHHHHhhCC------CcEEEEeeCCCcCce
Q 034688 2 STAVELLDQG------HEVDIYELRSFIGGK 26 (87)
Q Consensus 2 ~aA~~L~~~G------~~V~v~E~~~~~GG~ 26 (87)
++||+|++++ +.|+|||++...||-
T Consensus 24 ctayyLt~~~sf~~~~~~ItifEs~~IA~ga 54 (380)
T KOG2852|consen 24 CTAYYLTEHPSFKKGELDITIFESKEIAGGA 54 (380)
T ss_pred eeehhhhcCCccCCCceeEEEEeeccccccc
Confidence 6899999987 899999999999983
No 240
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=86.61 E-value=0.52 Score=32.54 Aligned_cols=19 Identities=32% Similarity=0.695 Sum_probs=16.5
Q ss_pred HHHhhCCCcEEEEeeCCCcC
Q 034688 5 VELLDQGHEVDIYELRSFIG 24 (87)
Q Consensus 5 ~~L~~~G~~V~v~E~~~~~G 24 (87)
++|+++|.+|+|+|+.. ++
T Consensus 1 ~~La~~G~~V~vle~~~-~~ 19 (337)
T TIGR02352 1 WELAKRGHSVTLFDRDP-MG 19 (337)
T ss_pred ChHHHCCCceEEEcCCC-CC
Confidence 57999999999999987 54
No 241
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=86.51 E-value=0.56 Score=35.81 Aligned_cols=26 Identities=15% Similarity=0.132 Sum_probs=21.8
Q ss_pred ChhHHHHhhC--CCcEEEEeeCCCcCce
Q 034688 1 MSTAVELLDQ--GHEVDIYELRSFIGGK 26 (87)
Q Consensus 1 L~aA~~L~~~--G~~V~v~E~~~~~GG~ 26 (87)
|+||..++++ |.+|+|+||....||.
T Consensus 16 l~AAi~aa~~g~g~~V~vleK~~~~gg~ 43 (575)
T PRK05945 16 CRAALEIKRLDPSLDVAVVAKTHPIRSH 43 (575)
T ss_pred HHHHHHHHHhcCCCcEEEEeccCCCchh
Confidence 5799999987 4899999999877763
No 242
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=86.16 E-value=0.61 Score=34.98 Aligned_cols=21 Identities=14% Similarity=0.126 Sum_probs=18.0
Q ss_pred HHHHhhCCCcEEEEeeCCCcCc
Q 034688 4 AVELLDQGHEVDIYELRSFIGG 25 (87)
Q Consensus 4 A~~L~~~G~~V~v~E~~~~~GG 25 (87)
|+.|++.|++|+|+|+.+ +|.
T Consensus 1 ArdLa~rGl~V~llEk~d-~~~ 21 (516)
T TIGR03377 1 MRDLALRGLRCILLEQGD-LAH 21 (516)
T ss_pred ChhHHHCCCCEEEEeCCC-ccc
Confidence 689999999999999985 553
No 243
>PRK07395 L-aspartate oxidase; Provisional
Probab=85.49 E-value=0.64 Score=35.48 Aligned_cols=25 Identities=12% Similarity=0.070 Sum_probs=21.3
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCce
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGK 26 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~ 26 (87)
|+||..++ +|.+|+|+||.+..||.
T Consensus 22 l~AAi~A~-~G~~V~lieK~~~~gg~ 46 (553)
T PRK07395 22 LYAALCLP-SHLRVGLITKDTLKTSA 46 (553)
T ss_pred HHHHHHhh-cCCCEEEEEccCCCCCc
Confidence 57888886 59999999999988884
No 244
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=84.89 E-value=0.75 Score=34.80 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=21.2
Q ss_pred ChhHHHHhhCCCcEEEEeeCCC-cCceE
Q 034688 1 MSTAVELLDQGHEVDIYELRSF-IGGKV 27 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~-~GG~~ 27 (87)
|+||..+ ++|.+|+|+||.+. .||..
T Consensus 20 l~AAi~A-~~G~~VilleK~~~~~gG~s 46 (543)
T PRK06263 20 ARAAIEA-ERGKNVVIVSKGLFGKSGCT 46 (543)
T ss_pred HHHHHHH-hcCCCEEEEEccCCCCCccc
Confidence 5789998 89999999999875 55543
No 245
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=84.77 E-value=0.84 Score=34.63 Aligned_cols=28 Identities=11% Similarity=0.031 Sum_probs=22.6
Q ss_pred ChhHHHHhhC--CCcEEEEeeCCCcCceEE
Q 034688 1 MSTAVELLDQ--GHEVDIYELRSFIGGKVA 28 (87)
Q Consensus 1 L~aA~~L~~~--G~~V~v~E~~~~~GG~~~ 28 (87)
+|+|+.|++. |.+|+|+|+.+.+|-...
T Consensus 19 ~sla~~L~~~~~~~~V~vlEr~~~~a~~sS 48 (497)
T PRK13339 19 TTFGVLLKELDPDWNIEVVERLDSPAIESS 48 (497)
T ss_pred HHHHHHHHhCCCCCeEEEEEcCCCcchhcC
Confidence 3789999998 899999999667775443
No 246
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=84.37 E-value=0.78 Score=29.30 Aligned_cols=25 Identities=32% Similarity=0.211 Sum_probs=21.7
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCc
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGG 25 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG 25 (87)
|+||.+|++.|++|+|+|+.+....
T Consensus 12 l~aA~~l~~~~~~v~ii~~~~~~~~ 36 (201)
T PF07992_consen 12 LSAALELARPGAKVLIIEKSPGTPY 36 (201)
T ss_dssp HHHHHHHHHTTSEEEEESSSSHHHH
T ss_pred HHHHHHHhcCCCeEEEEeccccccc
Confidence 5799999999999999998886555
No 247
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=84.20 E-value=0.9 Score=35.07 Aligned_cols=25 Identities=20% Similarity=0.065 Sum_probs=21.3
Q ss_pred ChhHHHHhhC--CCcEEEEeeCCCcCc
Q 034688 1 MSTAVELLDQ--GHEVDIYELRSFIGG 25 (87)
Q Consensus 1 L~aA~~L~~~--G~~V~v~E~~~~~GG 25 (87)
|+||..++++ |.+|+|+||.+..++
T Consensus 24 l~AAi~Aae~~~G~~V~lieK~~~~~s 50 (608)
T PRK06854 24 CGAAFEAKEWAPDLKVLIVEKANIKRS 50 (608)
T ss_pred HHHHHHHHHhCCCCeEEEEECCCcCCC
Confidence 5799999998 999999999886544
No 248
>PRK08071 L-aspartate oxidase; Provisional
Probab=83.89 E-value=0.85 Score=34.38 Aligned_cols=26 Identities=19% Similarity=0.120 Sum_probs=22.0
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceE
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKV 27 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~ 27 (87)
|+||..+++ |.+|+|+|+.+..||.+
T Consensus 16 l~AAl~a~~-g~~V~lveK~~~~~g~s 41 (510)
T PRK08071 16 LTVAKELCH-EYNVIIITKKTKRNSNS 41 (510)
T ss_pred HHHHHHhhc-CCCEEEEeccCCCCCCc
Confidence 578999876 89999999999888744
No 249
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=83.82 E-value=0.9 Score=34.85 Aligned_cols=27 Identities=4% Similarity=0.080 Sum_probs=22.6
Q ss_pred ChhHHHHhhC--CCcEEEEeeCCCcCceE
Q 034688 1 MSTAVELLDQ--GHEVDIYELRSFIGGKV 27 (87)
Q Consensus 1 L~aA~~L~~~--G~~V~v~E~~~~~GG~~ 27 (87)
|+||..++++ |.+|+|+||....||.+
T Consensus 17 l~AAi~Aa~~g~g~~V~lleK~~~~~g~s 45 (582)
T PRK09231 17 LRAAIAAAEANPNLKIALISKVYPMRSHT 45 (582)
T ss_pred HHHHHHHHHhCCCCcEEEEEccCCCCCCh
Confidence 5799999887 47999999998888744
No 250
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=83.76 E-value=0.82 Score=29.56 Aligned_cols=16 Identities=25% Similarity=0.449 Sum_probs=14.8
Q ss_pred ChhHHHHhhCCCcEEE
Q 034688 1 MSTAVELLDQGHEVDI 16 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v 16 (87)
|++|++|+++|++|+|
T Consensus 42 l~~AR~L~~~G~~V~v 57 (169)
T PF03853_consen 42 LVAARHLANRGYNVTV 57 (169)
T ss_dssp HHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHCCCeEEE
Confidence 5799999999999999
No 251
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=83.68 E-value=0.94 Score=34.78 Aligned_cols=27 Identities=7% Similarity=0.080 Sum_probs=22.9
Q ss_pred ChhHHHHhhC--CCcEEEEeeCCCcCceE
Q 034688 1 MSTAVELLDQ--GHEVDIYELRSFIGGKV 27 (87)
Q Consensus 1 L~aA~~L~~~--G~~V~v~E~~~~~GG~~ 27 (87)
|+||..++++ |.+|+|+||....||.+
T Consensus 16 l~AAl~aa~~g~g~~V~lveK~~~~~~~s 44 (580)
T TIGR01176 16 LRAAIAAAEANPHLDVALISKVYPMRSHT 44 (580)
T ss_pred HHHHHHHHHhCCCCcEEEEEccCCCCCCc
Confidence 5789999886 58999999999888854
No 252
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=82.78 E-value=1.1 Score=35.00 Aligned_cols=25 Identities=16% Similarity=0.133 Sum_probs=21.0
Q ss_pred ChhHHHHhhCCCcEEEEeeCC-CcCc
Q 034688 1 MSTAVELLDQGHEVDIYELRS-FIGG 25 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~-~~GG 25 (87)
+.||+.+++.|.+|.++|+.. .+|+
T Consensus 17 ~eAA~~aAR~G~kV~LiE~~~d~iG~ 42 (618)
T PRK05192 17 CEAALAAARMGAKTLLLTHNLDTIGQ 42 (618)
T ss_pred HHHHHHHHHcCCcEEEEecccccccc
Confidence 368999999999999999983 5654
No 253
>PRK02106 choline dehydrogenase; Validated
Probab=82.78 E-value=0.96 Score=34.30 Aligned_cols=21 Identities=19% Similarity=0.022 Sum_probs=18.6
Q ss_pred hhHHHHhh-CCCcEEEEeeCCC
Q 034688 2 STAVELLD-QGHEVDIYELRSF 22 (87)
Q Consensus 2 ~aA~~L~~-~G~~V~v~E~~~~ 22 (87)
.+|.+|++ .|++|+|+|+.+.
T Consensus 19 vvA~rLae~~g~~VlvlEaG~~ 40 (560)
T PRK02106 19 VLANRLSEDPDVSVLLLEAGGP 40 (560)
T ss_pred HHHHHHHhCCCCeEEEecCCCc
Confidence 57899999 7999999999964
No 254
>PRK08275 putative oxidoreductase; Provisional
Probab=82.47 E-value=1.1 Score=33.99 Aligned_cols=25 Identities=12% Similarity=0.066 Sum_probs=20.7
Q ss_pred ChhHHHHhhC--CCcEEEEeeCCCcCc
Q 034688 1 MSTAVELLDQ--GHEVDIYELRSFIGG 25 (87)
Q Consensus 1 L~aA~~L~~~--G~~V~v~E~~~~~GG 25 (87)
|+||..++++ |.+|+|+||.+..+|
T Consensus 22 l~AAi~aa~~g~g~~VilveK~~~~~~ 48 (554)
T PRK08275 22 PMAAIKAKERNPALRVLLLEKANVKRS 48 (554)
T ss_pred HHHHHHHHHhCCCCeEEEEeCCCCCCC
Confidence 5799999886 789999999987433
No 255
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=82.12 E-value=1.6 Score=32.68 Aligned_cols=29 Identities=34% Similarity=0.227 Sum_probs=23.2
Q ss_pred hhHHHHhh--CCCcEEEEeeCCCcCceEEEE
Q 034688 2 STAVELLD--QGHEVDIYELRSFIGGKVASF 30 (87)
Q Consensus 2 ~aA~~L~~--~G~~V~v~E~~~~~GG~~~s~ 30 (87)
.+|+.|.+ .+..|+|+|+.+.+.|..+.-
T Consensus 34 YtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyG 64 (468)
T KOG1800|consen 34 YTAQHLLKRHPNAHVDIFEKLPVPFGLVRYG 64 (468)
T ss_pred HHHHHHHhcCCCCeeEeeecCCcccceeeec
Confidence 35566655 479999999999999999864
No 256
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=82.08 E-value=3.4 Score=23.84 Aligned_cols=37 Identities=24% Similarity=0.371 Sum_probs=24.5
Q ss_pred HHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEee
Q 034688 4 AVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEI 40 (87)
Q Consensus 4 A~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~ 40 (87)
..+|.++|.++..-......|.+...+++++|..+|.
T Consensus 87 ~~~l~~~G~~~~~~~~~~~~~~~~~~~~DP~G~~iEl 123 (125)
T cd08352 87 VKHLKAKGVEVEPIRVDEFTGKRFTFFYDPDGLPLEL 123 (125)
T ss_pred HHHHHHcCCccccccccCCCceEEEEEECCCCCEEEe
Confidence 4567778987765334444555566677888888875
No 257
>PRK09077 L-aspartate oxidase; Provisional
Probab=81.78 E-value=1.3 Score=33.59 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=21.6
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCce
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGK 26 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~ 26 (87)
|+||..+++. .+|+|+||....||.
T Consensus 21 l~AA~~aa~~-~~VilveK~~~~~g~ 45 (536)
T PRK09077 21 LSLALRLAEH-RRVAVLSKGPLSEGS 45 (536)
T ss_pred HHHHHHHHHC-CCEEEEeccCCCCCC
Confidence 5789999886 899999999988874
No 258
>PLN02697 lycopene epsilon cyclase
Probab=81.45 E-value=1.3 Score=33.87 Aligned_cols=24 Identities=17% Similarity=0.087 Sum_probs=20.2
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcC
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIG 24 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~G 24 (87)
|++|..|++.|++|+|+|+.....
T Consensus 121 LalA~~Lak~Gl~V~LIe~~~p~~ 144 (529)
T PLN02697 121 LALAAESAKLGLNVGLIGPDLPFT 144 (529)
T ss_pred HHHHHHHHhCCCcEEEecCcccCC
Confidence 578999999999999999864443
No 259
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=80.37 E-value=6.7 Score=22.94 Aligned_cols=37 Identities=19% Similarity=0.262 Sum_probs=24.7
Q ss_pred HHHHhhCCCcEEEEeeCCCc-CceEEEEeccCCeEEee
Q 034688 4 AVELLDQGHEVDIYELRSFI-GGKVASFVCKRGNHIEI 40 (87)
Q Consensus 4 A~~L~~~G~~V~v~E~~~~~-GG~~~s~~~~~g~~~d~ 40 (87)
..+|.++|.++.-.+..... .|+...+++++|..+|.
T Consensus 79 ~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~ 116 (122)
T cd07265 79 EARLQAYGVAVERIPAGELPGVGRRVRFQLPSGHTMEL 116 (122)
T ss_pred HHHHHHCCCcEEEcccCCCCCCceEEEEECCCCCEEEE
Confidence 44677889887644322233 36766778888998885
No 260
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=79.86 E-value=0.65 Score=32.45 Aligned_cols=27 Identities=26% Similarity=0.263 Sum_probs=22.9
Q ss_pred ChhHHHHhhC--CCcEEEEeeCCCcCceE
Q 034688 1 MSTAVELLDQ--GHEVDIYELRSFIGGKV 27 (87)
Q Consensus 1 L~aA~~L~~~--G~~V~v~E~~~~~GG~~ 27 (87)
|+|||+.+++ ..+|.|+|++-.+||-.
T Consensus 89 LsAAY~I~~~rPdlkvaIIE~SVaPGGGa 117 (328)
T KOG2960|consen 89 LSAAYVIAKNRPDLKVAIIESSVAPGGGA 117 (328)
T ss_pred cceeeeeeccCCCceEEEEEeeecCCCcc
Confidence 7899999865 58999999999999843
No 261
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=79.65 E-value=1.5 Score=32.23 Aligned_cols=23 Identities=26% Similarity=0.192 Sum_probs=20.3
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCc
Q 034688 1 MSTAVELLDQGHEVDIYELRSFI 23 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~ 23 (87)
++||..|.++|++|+++|+++..
T Consensus 13 ~s~a~~l~~~G~~V~~~D~~~~~ 35 (459)
T PRK02705 13 IAAARLLKAQGWEVVVSDRNDSP 35 (459)
T ss_pred HHHHHHHHHCCCEEEEECCCCch
Confidence 47899999999999999988754
No 262
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=79.40 E-value=1.7 Score=33.34 Aligned_cols=24 Identities=13% Similarity=0.004 Sum_probs=20.3
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCc
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGG 25 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG 25 (87)
|+||..+++. .+|+|+||.+..||
T Consensus 18 l~AAl~aa~~-~~VilleK~~~~~g 41 (583)
T PRK08205 18 MRAAIEAGPR-ARTAVLTKLYPTRS 41 (583)
T ss_pred HHHHHHHHhC-CCEEEEeCCCCCCC
Confidence 5789999877 99999999886665
No 263
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=79.34 E-value=1.3 Score=33.29 Aligned_cols=21 Identities=19% Similarity=0.039 Sum_probs=18.4
Q ss_pred hhHHHHhhCC-CcEEEEeeCCC
Q 034688 2 STAVELLDQG-HEVDIYELRSF 22 (87)
Q Consensus 2 ~aA~~L~~~G-~~V~v~E~~~~ 22 (87)
.+|.+|+++| ++|+|+|+.+.
T Consensus 13 vvA~rLs~~~~~~VlvlEaG~~ 34 (532)
T TIGR01810 13 VLAGRLSEDVSNSVLVLEAGGS 34 (532)
T ss_pred HHHHHhccCCCCeEEEEecCCC
Confidence 5789999998 79999999864
No 264
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=78.61 E-value=1.8 Score=32.16 Aligned_cols=21 Identities=14% Similarity=0.298 Sum_probs=18.8
Q ss_pred ChhHHHHhhCCCcEEEEeeCC
Q 034688 1 MSTAVELLDQGHEVDIYELRS 21 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~ 21 (87)
++||..|+++|.+|+|+|+..
T Consensus 15 l~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 15 LTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred HHHHHHHHHCCCcEEEEECCC
Confidence 478999999999999999864
No 265
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=78.41 E-value=1.8 Score=33.05 Aligned_cols=20 Identities=30% Similarity=0.272 Sum_probs=17.8
Q ss_pred hhHHHHhhCCCcEEEEeeCC
Q 034688 2 STAVELLDQGHEVDIYELRS 21 (87)
Q Consensus 2 ~aA~~L~~~G~~V~v~E~~~ 21 (87)
+.|.+|++.|++|+|+|+..
T Consensus 21 ~lA~rLs~~g~~VllLEaG~ 40 (542)
T COG2303 21 VLAARLSDAGLSVLVLEAGG 40 (542)
T ss_pred HHHHHhcCCCCeEEEEeCCC
Confidence 46899999999999999985
No 266
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=78.28 E-value=2.2 Score=29.24 Aligned_cols=20 Identities=20% Similarity=0.197 Sum_probs=17.6
Q ss_pred hHHHHhhCCCcEEEEeeCCC
Q 034688 3 TAVELLDQGHEVDIYELRSF 22 (87)
Q Consensus 3 aA~~L~~~G~~V~v~E~~~~ 22 (87)
.|+.|++.|++|.|+|..++
T Consensus 21 LA~~La~~G~rVLlID~Dpq 40 (274)
T PRK13235 21 TVAGLAEMGKKVMVVGCDPK 40 (274)
T ss_pred HHHHHHHCCCcEEEEecCCc
Confidence 58889999999999997766
No 267
>PRK11478 putative lyase; Provisional
Probab=77.97 E-value=7.8 Score=22.76 Aligned_cols=38 Identities=11% Similarity=0.200 Sum_probs=24.1
Q ss_pred hHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEee
Q 034688 3 TAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEI 40 (87)
Q Consensus 3 aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~ 40 (87)
+..+|.++|+++.-....+..|.+..-+++.+|..+|.
T Consensus 89 ~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~iEl 126 (129)
T PRK11478 89 AVAHLESHNVKCEAIRVDPYTQKRFTFFNDPDGLPLEL 126 (129)
T ss_pred HHHHHHHcCCeeeccccCCCCCCEEEEEECCCCCEEEE
Confidence 34567788988642222333466666667888988876
No 268
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=77.06 E-value=9.4 Score=21.95 Aligned_cols=37 Identities=22% Similarity=0.056 Sum_probs=24.5
Q ss_pred hHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEee
Q 034688 3 TAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEI 40 (87)
Q Consensus 3 aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~ 40 (87)
+..+|.++|.++.- +-....+++...+++.+|+.+|.
T Consensus 84 ~~~~l~~~G~~~~~-~~~~~~~~~~~~~~DpdG~~iE~ 120 (121)
T cd07233 84 ACERLEEMGVEVTK-PPGDGGMKGIAFIKDPDGYWIEL 120 (121)
T ss_pred HHHHHHHCCCEEee-CCccCCCceEEEEECCCCCEEEe
Confidence 34567778887653 33333566777778888888874
No 269
>PRK09897 hypothetical protein; Provisional
Probab=77.06 E-value=2.7 Score=32.25 Aligned_cols=29 Identities=31% Similarity=0.345 Sum_probs=22.4
Q ss_pred ChhHHHHhhCC--CcEEEEeeCCCcC-ceEEE
Q 034688 1 MSTAVELLDQG--HEVDIYELRSFIG-GKVAS 29 (87)
Q Consensus 1 L~aA~~L~~~G--~~V~v~E~~~~~G-G~~~s 29 (87)
|++|..|.+.+ ++|+|||++..+| |...+
T Consensus 14 l~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays 45 (534)
T PRK09897 14 IYTFFSLLQQQTPLSISIFEQADEAGVGMPYS 45 (534)
T ss_pred HHHHHHHHhcCCCCcEEEEecCCCCCcceeec
Confidence 46888887653 5999999999999 65433
No 270
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=76.61 E-value=1.9 Score=29.76 Aligned_cols=18 Identities=28% Similarity=0.281 Sum_probs=16.0
Q ss_pred ChhHHHHhhCCCcEEEEe
Q 034688 1 MSTAVELLDQGHEVDIYE 18 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E 18 (87)
|++|++|+++|++|+||=
T Consensus 77 lv~AR~L~~~G~~V~v~~ 94 (246)
T PLN03050 77 LVAARHLAHFGYEVTVCY 94 (246)
T ss_pred HHHHHHHHHCCCeEEEEE
Confidence 478999999999999994
No 271
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=76.56 E-value=2.2 Score=32.93 Aligned_cols=27 Identities=19% Similarity=0.278 Sum_probs=24.5
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceE
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKV 27 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~ 27 (87)
|.||..++++|.+|.|+|+.+..+|..
T Consensus 19 l~AAi~aa~~g~~V~l~~K~~~~rg~t 45 (562)
T COG1053 19 LRAAIEAAEAGLKVALLSKAPPKRGHT 45 (562)
T ss_pred HHHHHHHHhcCCcEEEEEccccCCCch
Confidence 579999999999999999999999755
No 272
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=76.54 E-value=2.8 Score=28.86 Aligned_cols=20 Identities=20% Similarity=0.200 Sum_probs=18.1
Q ss_pred hHHHHhhCCCcEEEEeeCCC
Q 034688 3 TAVELLDQGHEVDIYELRSF 22 (87)
Q Consensus 3 aA~~L~~~G~~V~v~E~~~~ 22 (87)
.|+.|+++|++|.|+|..++
T Consensus 21 LA~~La~~G~rVLliD~Dpq 40 (279)
T PRK13230 21 IAAALAESGKKVLVVGCDPK 40 (279)
T ss_pred HHHHHHhCCCEEEEEeeCCc
Confidence 48899999999999998887
No 273
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=76.46 E-value=2.7 Score=28.61 Aligned_cols=20 Identities=20% Similarity=0.130 Sum_probs=17.9
Q ss_pred hHHHHhhCCCcEEEEeeCCC
Q 034688 3 TAVELLDQGHEVDIYELRSF 22 (87)
Q Consensus 3 aA~~L~~~G~~V~v~E~~~~ 22 (87)
.|+.|+++|++|.|+|..++
T Consensus 20 LA~~la~~G~rvlliD~Dpq 39 (267)
T cd02032 20 LSVALAKRGKKVLQIGCDPK 39 (267)
T ss_pred HHHHHHHCCCcEEEEecCCC
Confidence 47889999999999999876
No 274
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=76.04 E-value=2.9 Score=27.54 Aligned_cols=21 Identities=14% Similarity=0.048 Sum_probs=17.8
Q ss_pred hHHHHhhCCCcEEEEeeCCCc
Q 034688 3 TAVELLDQGHEVDIYELRSFI 23 (87)
Q Consensus 3 aA~~L~~~G~~V~v~E~~~~~ 23 (87)
.|+.|++.|++|.|+|..++.
T Consensus 20 LA~~la~~G~rvLliD~D~q~ 40 (212)
T cd02117 20 LSAALAEMGKKVLQVGCDPKA 40 (212)
T ss_pred HHHHHHHCCCcEEEEeCCCCC
Confidence 478899999999999977663
No 275
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=75.77 E-value=2.6 Score=32.45 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=23.2
Q ss_pred hhHHHHhhCCCcEEEEeeCCCcCceE
Q 034688 2 STAVELLDQGHEVDIYELRSFIGGKV 27 (87)
Q Consensus 2 ~aA~~L~~~G~~V~v~E~~~~~GG~~ 27 (87)
.+|+.++-+|++|+++|+++-..|-.
T Consensus 26 GiArDaA~RGl~v~LvE~~D~AsGTS 51 (532)
T COG0578 26 GIARDAAGRGLKVALVEKGDLASGTS 51 (532)
T ss_pred HHHHHHHhCCCeEEEEecCcccCccc
Confidence 47899999999999999999999844
No 276
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=75.31 E-value=3.4 Score=28.29 Aligned_cols=22 Identities=23% Similarity=0.182 Sum_probs=18.8
Q ss_pred hHHHHhhCCCcEEEEeeCCCcC
Q 034688 3 TAVELLDQGHEVDIYELRSFIG 24 (87)
Q Consensus 3 aA~~L~~~G~~V~v~E~~~~~G 24 (87)
.|+.|+++|++|.|+|..++.+
T Consensus 20 LA~~La~~G~~VlliD~D~q~~ 41 (275)
T TIGR01287 20 IAAALAEMGKKVMIVGCDPKAD 41 (275)
T ss_pred HHHHHHHCCCeEEEEeCCCCCC
Confidence 5888999999999999887743
No 277
>PHA02518 ParA-like protein; Provisional
Probab=75.12 E-value=3.3 Score=26.78 Aligned_cols=20 Identities=30% Similarity=0.295 Sum_probs=17.6
Q ss_pred hHHHHhhCCCcEEEEeeCCC
Q 034688 3 TAVELLDQGHEVDIYELRSF 22 (87)
Q Consensus 3 aA~~L~~~G~~V~v~E~~~~ 22 (87)
.|+.|++.|++|.|+|..++
T Consensus 21 la~~la~~g~~vlliD~D~q 40 (211)
T PHA02518 21 LASWLHADGHKVLLVDLDPQ 40 (211)
T ss_pred HHHHHHhCCCeEEEEeCCCC
Confidence 46789999999999999877
No 278
>PRK10037 cell division protein; Provisional
Probab=75.04 E-value=2.7 Score=28.44 Aligned_cols=20 Identities=20% Similarity=0.026 Sum_probs=17.9
Q ss_pred hHHHHhhCCCcEEEEeeCCC
Q 034688 3 TAVELLDQGHEVDIYELRSF 22 (87)
Q Consensus 3 aA~~L~~~G~~V~v~E~~~~ 22 (87)
.|+.|+++|++|.|+|..++
T Consensus 22 LA~~La~~G~rVLlID~D~q 41 (250)
T PRK10037 22 LAWSLQMLGENVLVIDACPD 41 (250)
T ss_pred HHHHHHhcCCcEEEEeCChh
Confidence 47889999999999999887
No 279
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=74.60 E-value=3.2 Score=28.28 Aligned_cols=20 Identities=10% Similarity=-0.009 Sum_probs=17.5
Q ss_pred hHHHHhhCCCcEEEEeeCCC
Q 034688 3 TAVELLDQGHEVDIYELRSF 22 (87)
Q Consensus 3 aA~~L~~~G~~V~v~E~~~~ 22 (87)
.|+.|+++|++|.|+|..++
T Consensus 22 LA~~la~~G~kVLliD~Dpq 41 (270)
T PRK13185 22 LSAAFAKLGKKVLQIGCDPK 41 (270)
T ss_pred HHHHHHHCCCeEEEEeccCC
Confidence 47889999999999998865
No 280
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=74.58 E-value=10 Score=21.41 Aligned_cols=39 Identities=18% Similarity=0.198 Sum_probs=24.3
Q ss_pred hHHHHhhCCCcEEEEeeCCCcCc-eEEEEeccCCeEEeee
Q 034688 3 TAVELLDQGHEVDIYELRSFIGG-KVASFVCKRGNHIEIS 41 (87)
Q Consensus 3 aA~~L~~~G~~V~v~E~~~~~GG-~~~s~~~~~g~~~d~G 41 (87)
+..+|.++|..+.+.+-....+| +...++|++|..++..
T Consensus 72 ~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~DP~G~~ie~~ 111 (112)
T cd08349 72 LYAELKAKGADLIVYPPEDQPWGMREFAVRDPDGNLLRFG 111 (112)
T ss_pred HHHHHHHcCCcceecCccCCCcccEEEEEECCCCCEEEec
Confidence 34567778887544444444455 6556777788887753
No 281
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=74.52 E-value=3.2 Score=28.23 Aligned_cols=20 Identities=15% Similarity=0.032 Sum_probs=17.7
Q ss_pred hHHHHhhCCCcEEEEeeCCC
Q 034688 3 TAVELLDQGHEVDIYELRSF 22 (87)
Q Consensus 3 aA~~L~~~G~~V~v~E~~~~ 22 (87)
.|+.|+++|++|.|+|..++
T Consensus 20 LA~~La~~g~rVLliD~D~q 39 (268)
T TIGR01281 20 LSVAFAKLGKRVLQIGCDPK 39 (268)
T ss_pred HHHHHHhCCCeEEEEecCcc
Confidence 47789999999999998876
No 282
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=73.98 E-value=2.6 Score=30.66 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=20.2
Q ss_pred ChhHHHHhhCC--CcEEEEeeCCCcC
Q 034688 1 MSTAVELLDQG--HEVDIYELRSFIG 24 (87)
Q Consensus 1 L~aA~~L~~~G--~~V~v~E~~~~~G 24 (87)
|+||..|++.+ .+|+|+|+++..+
T Consensus 13 l~aA~~l~~~~~~~~Vtli~~~~~~~ 38 (444)
T PRK09564 13 MSAAAKAKRLNKELEITVYEKTDIVS 38 (444)
T ss_pred HHHHHHHHHHCCCCcEEEEECCCcce
Confidence 57899998865 5999999999875
No 283
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=73.91 E-value=3 Score=32.47 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=19.5
Q ss_pred ChhHHHHh----hCCCcEEEEeeCCCc
Q 034688 1 MSTAVELL----DQGHEVDIYELRSFI 23 (87)
Q Consensus 1 L~aA~~L~----~~G~~V~v~E~~~~~ 23 (87)
|+||..++ ++|.+|+|+||....
T Consensus 12 L~AAl~Aa~~~~e~G~~VilieK~~~~ 38 (614)
T TIGR02061 12 CGAAFEAVYWGDKKGLKIVLVEKANLE 38 (614)
T ss_pred HHHHHHHHhhhhhCCCeEEEEEccCCC
Confidence 57899988 679999999998763
No 284
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=73.81 E-value=3.7 Score=25.97 Aligned_cols=21 Identities=19% Similarity=0.264 Sum_probs=17.3
Q ss_pred hHHHHhhCCCcEEEEeeCCCc
Q 034688 3 TAVELLDQGHEVDIYELRSFI 23 (87)
Q Consensus 3 aA~~L~~~G~~V~v~E~~~~~ 23 (87)
.|+.|++.|++|.|+|...+-
T Consensus 20 LA~~la~~g~~vllvD~D~q~ 40 (169)
T cd02037 20 LALALAKLGYKVGLLDADIYG 40 (169)
T ss_pred HHHHHHHcCCcEEEEeCCCCC
Confidence 477888899999999987654
No 285
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=73.29 E-value=2.8 Score=26.47 Aligned_cols=59 Identities=15% Similarity=0.183 Sum_probs=30.9
Q ss_pred hhHHHHhhC-----CCcEEEEeeCCCcC-ceEEEEeccCCeEEeeeeEEEe--CC-C-hHHHHHHHHcCC
Q 034688 2 STAVELLDQ-----GHEVDIYELRSFIG-GKVASFVCKRGNHIEISLHVFF--GC-Y-NNLFRLTKKVGA 61 (87)
Q Consensus 2 ~aA~~L~~~-----G~~V~v~E~~~~~G-G~~~s~~~~~g~~~d~G~~~~~--~~-~-~~~~~l~~~lg~ 61 (87)
+++.+|.++ ..+|+|||+++. | |............+..-+..+. .. . +.+.+++++-+.
T Consensus 11 ~~l~~L~~~~~~~~~~~I~vfd~~~~-G~G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~~~ 79 (156)
T PF13454_consen 11 AVLERLLRQADPKPPLEITVFDPSPF-GAGGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDWLRANGA 79 (156)
T ss_pred HHHHHHHHhcCCCCCCEEEEEcCCCc-cccccCCCCCChHHhhcccccccccccccCCCCHHHHHHhcCc
Confidence 566677655 579999999555 5 5443321111233333333222 11 1 346666666653
No 286
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=73.23 E-value=2.6 Score=25.43 Aligned_cols=17 Identities=35% Similarity=0.509 Sum_probs=13.4
Q ss_pred ChhHHHHhhCCCcEEEE
Q 034688 1 MSTAVELLDQGHEVDIY 17 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~ 17 (87)
++.|..|+++|++|++.
T Consensus 16 lala~~L~~rGh~V~~~ 32 (139)
T PF03033_consen 16 LALARALRRRGHEVRLA 32 (139)
T ss_dssp HHHHHHHHHTT-EEEEE
T ss_pred HHHHHHHhccCCeEEEe
Confidence 35688999999999966
No 287
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=73.06 E-value=3.7 Score=28.79 Aligned_cols=20 Identities=15% Similarity=0.124 Sum_probs=18.1
Q ss_pred hHHHHhhCCCcEEEEeeCCC
Q 034688 3 TAVELLDQGHEVDIYELRSF 22 (87)
Q Consensus 3 aA~~L~~~G~~V~v~E~~~~ 22 (87)
.|+.|++.|++|.|+|..++
T Consensus 20 LA~~La~~G~rVLlID~DpQ 39 (290)
T CHL00072 20 ISIALARRGKKVLQIGCDPK 39 (290)
T ss_pred HHHHHHHCCCeEEEEeccCC
Confidence 57889999999999999877
No 288
>PRK13236 nitrogenase reductase; Reviewed
Probab=72.89 E-value=4.1 Score=28.54 Aligned_cols=21 Identities=14% Similarity=0.139 Sum_probs=17.9
Q ss_pred hHHHHhhCCCcEEEEeeCCCc
Q 034688 3 TAVELLDQGHEVDIYELRSFI 23 (87)
Q Consensus 3 aA~~L~~~G~~V~v~E~~~~~ 23 (87)
.|+.|++.|++|.|+|..++.
T Consensus 26 LA~~La~~G~rVLliD~D~q~ 46 (296)
T PRK13236 26 TLAAMAEMGQRILIVGCDPKA 46 (296)
T ss_pred HHHHHHHCCCcEEEEEccCCC
Confidence 478899999999999977663
No 289
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=72.73 E-value=3.3 Score=28.38 Aligned_cols=20 Identities=10% Similarity=0.079 Sum_probs=17.6
Q ss_pred hHHHHhhCCCcEEEEeeCCC
Q 034688 3 TAVELLDQGHEVDIYELRSF 22 (87)
Q Consensus 3 aA~~L~~~G~~V~v~E~~~~ 22 (87)
.|+.|++.|++|.|+|..++
T Consensus 21 LA~~La~~G~rVllvD~Dpq 40 (273)
T PRK13232 21 LTAALSTMGNKILLVGCDPK 40 (273)
T ss_pred HHHHHHhhCCCeEEEecccc
Confidence 47889999999999998776
No 290
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=72.39 E-value=14 Score=21.04 Aligned_cols=38 Identities=18% Similarity=0.059 Sum_probs=25.9
Q ss_pred HHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeee
Q 034688 4 AVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEIS 41 (87)
Q Consensus 4 A~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G 41 (87)
..+|.++|+++.-......-+|+...+.+++|..++.-
T Consensus 75 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~ 112 (117)
T cd07240 75 AAHLEAAGVAPEEASDPEPGVGRGLRFQDPDGHLLELF 112 (117)
T ss_pred HHHHHHcCCceEEcCccCCCCceEEEEECCCCCEEEEE
Confidence 34567788877665544445667777788888888763
No 291
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=72.24 E-value=8.3 Score=22.00 Aligned_cols=38 Identities=21% Similarity=0.180 Sum_probs=24.4
Q ss_pred HHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeee
Q 034688 4 AVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEIS 41 (87)
Q Consensus 4 A~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G 41 (87)
..+|.++|.++.--......+|+...+++++|..+|.-
T Consensus 72 ~~~l~~~G~~~~~~~~~~~~~~~~~~~~DPdG~~iEi~ 109 (113)
T cd08345 72 TERLKALGVEMKPERPRVQGEGRSIYFYDPDGHLLELH 109 (113)
T ss_pred HHHHHHcCCccCCCccccCCCceEEEEECCCCCEEEEE
Confidence 44667788876422223334677666778889888874
No 292
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=71.95 E-value=5 Score=25.12 Aligned_cols=23 Identities=13% Similarity=0.083 Sum_probs=18.9
Q ss_pred hHHHHhhCCCcEEEEeeCCCcCc
Q 034688 3 TAVELLDQGHEVDIYELRSFIGG 25 (87)
Q Consensus 3 aA~~L~~~G~~V~v~E~~~~~GG 25 (87)
.|+.|+++|++|.++|..++-+.
T Consensus 20 la~~l~~~g~~vllvD~D~~~~~ 42 (179)
T cd02036 20 LGTALAQLGYKVVLIDADLGLRN 42 (179)
T ss_pred HHHHHHhCCCeEEEEeCCCCCCC
Confidence 47788899999999998886543
No 293
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=71.95 E-value=4.2 Score=27.45 Aligned_cols=20 Identities=20% Similarity=0.179 Sum_probs=17.8
Q ss_pred hHHHHhhCCCcEEEEeeCCC
Q 034688 3 TAVELLDQGHEVDIYELRSF 22 (87)
Q Consensus 3 aA~~L~~~G~~V~v~E~~~~ 22 (87)
.|+.|+++|++|.|+|..++
T Consensus 21 LA~~La~~G~kVlliD~Dpq 40 (270)
T cd02040 21 LSAALAEMGKKVMIVGCDPK 40 (270)
T ss_pred HHHHHHhCCCeEEEEEcCCC
Confidence 47888999999999999887
No 294
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=71.18 E-value=3.4 Score=29.81 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=20.7
Q ss_pred hhHHHHhhCCCcEEEEeeCCCcCce
Q 034688 2 STAVELLDQGHEVDIYELRSFIGGK 26 (87)
Q Consensus 2 ~aA~~L~~~G~~V~v~E~~~~~GG~ 26 (87)
-+|..|++.|.+|+|+|+.+++.++
T Consensus 158 E~A~~l~~~g~~Vtlv~~~~~~l~~ 182 (396)
T PRK09754 158 ELAASATQRRCKVTVIELAATVMGR 182 (396)
T ss_pred HHHHHHHHcCCeEEEEecCCcchhh
Confidence 3677888899999999999887654
No 295
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=71.10 E-value=3.5 Score=30.51 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=18.9
Q ss_pred ChhHHHHhhCCCcEEEEeeCCC
Q 034688 1 MSTAVELLDQGHEVDIYELRSF 22 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~ 22 (87)
|++|..|+++|++|+++|+++.
T Consensus 29 ~~~A~~L~~~G~~V~~~d~~~~ 50 (480)
T PRK01438 29 FAAADALLELGARVTVVDDGDD 50 (480)
T ss_pred HHHHHHHHHCCCEEEEEeCCch
Confidence 4689999999999999997764
No 296
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=71.01 E-value=5.2 Score=29.59 Aligned_cols=22 Identities=18% Similarity=0.173 Sum_probs=17.8
Q ss_pred HhhCCCcEEEEeeCCCcCceEEE
Q 034688 7 LLDQGHEVDIYELRSFIGGKVAS 29 (87)
Q Consensus 7 L~~~G~~V~v~E~~~~~GG~~~s 29 (87)
++++|.+|.++|+ +.+||-|-.
T Consensus 19 ~~~~g~~V~lie~-~~~GGtC~n 40 (452)
T TIGR03452 19 PRFADKRIAIVEK-GTFGGTCLN 40 (452)
T ss_pred HHHCCCeEEEEeC-CCCCCeeec
Confidence 4457999999997 578998854
No 297
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=69.77 E-value=3.7 Score=26.01 Aligned_cols=20 Identities=35% Similarity=0.519 Sum_probs=17.8
Q ss_pred hhHHHHhhCCCcEEEEeeCC
Q 034688 2 STAVELLDQGHEVDIYELRS 21 (87)
Q Consensus 2 ~aA~~L~~~G~~V~v~E~~~ 21 (87)
+.|..|+++|++|++|.+++
T Consensus 13 AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 13 ALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp HHHHHHHHCTEEEEEETSCH
T ss_pred HHHHHHHHcCCEEEEEeccH
Confidence 67899999999999998774
No 298
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=69.42 E-value=11 Score=20.90 Aligned_cols=37 Identities=19% Similarity=0.052 Sum_probs=24.2
Q ss_pred hHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEee
Q 034688 3 TAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEI 40 (87)
Q Consensus 3 aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~ 40 (87)
++.+|.++|.+++--+ ....|++...+.|.+|..+|.
T Consensus 78 ~~~~l~~~g~~~~~~~-~~~~~~~~~~~~DP~G~~iE~ 114 (114)
T cd07245 78 FRARLKAAGVPYTESD-VPGDGVRQLFVRDPDGNRIEL 114 (114)
T ss_pred HHHHHHHcCCCccccc-CCCCCccEEEEECCCCCEEeC
Confidence 3456777888754333 224677777778888888763
No 299
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=69.29 E-value=5.7 Score=29.71 Aligned_cols=29 Identities=24% Similarity=0.375 Sum_probs=25.6
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceEEE
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKVAS 29 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s 29 (87)
+++|++-++.|.+|.|.|..-++||-|--
T Consensus 33 vasARrAa~~GAkv~l~E~~f~lGGTCVn 61 (478)
T KOG0405|consen 33 VASARRAASHGAKVALCELPFGLGGTCVN 61 (478)
T ss_pred hHHhHHHHhcCceEEEEecCCCcCceEEe
Confidence 46889999999999999999999998843
No 300
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=69.04 E-value=4.1 Score=29.81 Aligned_cols=21 Identities=19% Similarity=0.169 Sum_probs=18.7
Q ss_pred ChhHHHHhhCCCcEEEEeeCC
Q 034688 1 MSTAVELLDQGHEVDIYELRS 21 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~ 21 (87)
+++|..|++.|++|+++|+.+
T Consensus 18 ~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 18 LALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred HHHHHHHHHCCCEEEEEeCCc
Confidence 468999999999999999875
No 301
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=68.91 E-value=6.4 Score=24.91 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=17.9
Q ss_pred hHHHHhhCCCcEEEEeeCCCcCc
Q 034688 3 TAVELLDQGHEVDIYELRSFIGG 25 (87)
Q Consensus 3 aA~~L~~~G~~V~v~E~~~~~GG 25 (87)
.|..|+++|++|.++|..+....
T Consensus 19 la~~la~~g~~VlliD~D~~~~~ 41 (195)
T PF01656_consen 19 LAQALARKGKKVLLIDLDPQAPN 41 (195)
T ss_dssp HHHHHHHTTS-EEEEEESTTSHH
T ss_pred HHhccccccccccccccCccccc
Confidence 47788899999999999776544
No 302
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=68.56 E-value=15 Score=21.07 Aligned_cols=36 Identities=19% Similarity=0.157 Sum_probs=24.3
Q ss_pred hHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEee
Q 034688 3 TAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEI 40 (87)
Q Consensus 3 aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~ 40 (87)
++.+|+++|+++.-. ..+.|++...+++++|..+|.
T Consensus 90 ~~~~~~~~g~~~~~~--~~~~~~~~~~~~DP~G~~iE~ 125 (126)
T cd08346 90 WRERLRAAGVPVSGV--VDHFGERSIYFEDPDGLRLEL 125 (126)
T ss_pred HHHHHHHcCCcccce--EeecceEEEEEECCCCCEEEe
Confidence 455677788876532 233577777788888888774
No 303
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=68.51 E-value=4.5 Score=29.72 Aligned_cols=24 Identities=13% Similarity=0.163 Sum_probs=19.9
Q ss_pred ChhHHHHhhC--CCcEEEEeeCCCcC
Q 034688 1 MSTAVELLDQ--GHEVDIYELRSFIG 24 (87)
Q Consensus 1 L~aA~~L~~~--G~~V~v~E~~~~~G 24 (87)
|+||..|++. +++|+|+|+++.++
T Consensus 14 ~~aA~~l~~~~~~~~I~li~~~~~~~ 39 (438)
T PRK13512 14 ATCASQIRRLDKESDIIIFEKDRDMS 39 (438)
T ss_pred HHHHHHHHhhCCCCCEEEEECCCCcc
Confidence 4789999876 68999999998765
No 304
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=68.37 E-value=4.1 Score=32.94 Aligned_cols=22 Identities=18% Similarity=0.212 Sum_probs=20.0
Q ss_pred ChhHHHHhhCCCcEEEEeeCCC
Q 034688 1 MSTAVELLDQGHEVDIYELRSF 22 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~ 22 (87)
|+||..+++.|.+|+|+||...
T Consensus 26 l~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 26 TMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred HHHHHHHHHCCCeEEEEecccc
Confidence 5799999999999999999875
No 305
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=68.09 E-value=16 Score=21.48 Aligned_cols=38 Identities=21% Similarity=0.253 Sum_probs=25.9
Q ss_pred hHHHHhhCCCcEEEEeeC-------CCcCceEEEEeccCCeEEee
Q 034688 3 TAVELLDQGHEVDIYELR-------SFIGGKVASFVCKRGNHIEI 40 (87)
Q Consensus 3 aA~~L~~~G~~V~v~E~~-------~~~GG~~~s~~~~~g~~~d~ 40 (87)
+..+|.++|.++.--... ...|++...+++.+|..+|.
T Consensus 74 ~~~~l~~~G~~~~~~~~~~~~~~~~~~~g~~~~~f~DPdG~~iEl 118 (123)
T cd08351 74 IFARIRERGIDYWADPQRTEPGQINTNDGGRGVYFLDPDGHLLEI 118 (123)
T ss_pred HHHHHHHcCCceecCCcccccccccCCCCeeEEEEECCCCCEEEE
Confidence 345677788877432222 24678888888899998886
No 306
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=68.01 E-value=6.9 Score=25.96 Aligned_cols=23 Identities=17% Similarity=0.174 Sum_probs=19.2
Q ss_pred hHHHHhhCCCcEEEEeeCCCcCc
Q 034688 3 TAVELLDQGHEVDIYELRSFIGG 25 (87)
Q Consensus 3 aA~~L~~~G~~V~v~E~~~~~GG 25 (87)
.|+.|++.|++|.++|..++-|.
T Consensus 21 LA~~la~~g~~VlliD~D~~~~~ 43 (251)
T TIGR01969 21 LGVALAKLGKKVLALDADITMAN 43 (251)
T ss_pred HHHHHHHCCCeEEEEeCCCCCcc
Confidence 57888999999999999886554
No 307
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=67.99 E-value=4.6 Score=31.66 Aligned_cols=26 Identities=19% Similarity=0.111 Sum_probs=21.1
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCce
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGK 26 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~ 26 (87)
+.||..+++.|.+|+|+|+....+|.
T Consensus 13 l~aA~ala~~G~~v~Lie~~~~~~g~ 38 (617)
T TIGR00136 13 CEAALAAARMGAKTLLLTLNLDTIGK 38 (617)
T ss_pred HHHHHHHHHCCCCEEEEecccccccC
Confidence 46899999999999999998654443
No 308
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=67.73 E-value=14 Score=21.41 Aligned_cols=38 Identities=18% Similarity=0.114 Sum_probs=25.1
Q ss_pred HHHHhhCCCcEEEEeeCCCcC-ceEEEEeccCCeEEeee
Q 034688 4 AVELLDQGHEVDIYELRSFIG-GKVASFVCKRGNHIEIS 41 (87)
Q Consensus 4 A~~L~~~G~~V~v~E~~~~~G-G~~~s~~~~~g~~~d~G 41 (87)
...|.++|+++.-.+.....| ++...+.+++|..++..
T Consensus 78 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~ 116 (121)
T cd07266 78 EAFFQELGLPTEWVEAGEEPGQGRALRVEDPLGFPIEFY 116 (121)
T ss_pred HHHHHHcCCCcccccCCcCCCCccEEEEECCCCCEEEEE
Confidence 345677898876543334444 56667778889988874
No 309
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=67.57 E-value=12 Score=21.81 Aligned_cols=37 Identities=19% Similarity=0.146 Sum_probs=23.2
Q ss_pred HHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeee
Q 034688 5 VELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEIS 41 (87)
Q Consensus 5 ~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G 41 (87)
.+|.++|..+.---.....|++...++|++|..+++-
T Consensus 85 ~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~iel~ 121 (122)
T cd07235 85 AELVGAGYPGHKEPWDAPWGQRYAIVKDPDGNLVDLF 121 (122)
T ss_pred HHHHHCCCCcCCCCccCCCCCEEEEEECCCCCEEEEe
Confidence 4566778765421122234667778888999998863
No 310
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=67.10 E-value=14 Score=21.71 Aligned_cols=35 Identities=20% Similarity=-0.014 Sum_probs=23.2
Q ss_pred HHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEee
Q 034688 5 VELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEI 40 (87)
Q Consensus 5 ~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~ 40 (87)
.+|.++|..+. -+-....+++...++|.+|+.+|.
T Consensus 87 ~~l~~~G~~i~-~~p~~~~~~~~~~~~DPdG~~ie~ 121 (124)
T cd09012 87 EKALAAGGKEF-REPQDHGFMYGRSFADLDGHLWEV 121 (124)
T ss_pred HHHHHCCCccc-CCcccCCceEEEEEECCCCCEEEE
Confidence 34556777653 244455666666678888988876
No 311
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=66.94 E-value=4.7 Score=29.90 Aligned_cols=25 Identities=20% Similarity=0.185 Sum_probs=17.6
Q ss_pred hhHHHHhhCCCcEEEE-eeCCCcCce
Q 034688 2 STAVELLDQGHEVDIY-ELRSFIGGK 26 (87)
Q Consensus 2 ~aA~~L~~~G~~V~v~-E~~~~~GG~ 26 (87)
.||+.+++.|.+|.++ +..+.+|..
T Consensus 13 eAA~aaAr~G~~V~Lit~~~d~i~~~ 38 (392)
T PF01134_consen 13 EAALAAARMGAKVLLITHNTDTIGEM 38 (392)
T ss_dssp HHHHHHHHTT--EEEEES-GGGTT--
T ss_pred HHHHHHHHCCCCEEEEeecccccccc
Confidence 5899999999999999 677777754
No 312
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=66.79 E-value=4.5 Score=27.36 Aligned_cols=18 Identities=22% Similarity=0.237 Sum_probs=15.8
Q ss_pred ChhHHHHhhCCCcEEEEe
Q 034688 1 MSTAVELLDQGHEVDIYE 18 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E 18 (87)
+.||++|...|++|+|+=
T Consensus 66 ~VaAR~L~~~G~~V~v~~ 83 (203)
T COG0062 66 LVAARHLKAAGYAVTVLL 83 (203)
T ss_pred HHHHHHHHhCCCceEEEE
Confidence 468999999999999984
No 313
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=66.71 E-value=5.8 Score=27.76 Aligned_cols=20 Identities=20% Similarity=0.242 Sum_probs=17.3
Q ss_pred hHHHHhhCCCcEEEEeeCCC
Q 034688 3 TAVELLDQGHEVDIYELRSF 22 (87)
Q Consensus 3 aA~~L~~~G~~V~v~E~~~~ 22 (87)
.|+.|++.|++|+|+|..++
T Consensus 24 La~~la~~g~kVLliD~D~q 43 (295)
T PRK13234 24 TLAALVEMGQKILIVGCDPK 43 (295)
T ss_pred HHHHHHHCCCeEEEEecccc
Confidence 47779999999999998776
No 314
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=66.11 E-value=4.5 Score=27.03 Aligned_cols=19 Identities=26% Similarity=0.422 Sum_probs=15.4
Q ss_pred HHHHhhCCCcEEEEeeCCC
Q 034688 4 AVELLDQGHEVDIYELRSF 22 (87)
Q Consensus 4 A~~L~~~G~~V~v~E~~~~ 22 (87)
|..|+++|++|+-+|.++.
T Consensus 45 alyLA~~G~~VtAvD~s~~ 63 (192)
T PF03848_consen 45 ALYLASQGFDVTAVDISPV 63 (192)
T ss_dssp HHHHHHTT-EEEEEESSHH
T ss_pred HHHHHHCCCeEEEEECCHH
Confidence 6789999999999987763
No 315
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=65.87 E-value=6.7 Score=26.04 Aligned_cols=20 Identities=25% Similarity=0.086 Sum_probs=17.7
Q ss_pred hHHHHhhCCCcEEEEeeCCC
Q 034688 3 TAVELLDQGHEVDIYELRSF 22 (87)
Q Consensus 3 aA~~L~~~G~~V~v~E~~~~ 22 (87)
.|+.|++.|++|.++|..++
T Consensus 22 la~~la~~g~~VlliD~D~q 41 (246)
T TIGR03371 22 LASALKLLGEPVLAIDLDPQ 41 (246)
T ss_pred HHHHHHhCCCcEEEEeCCCc
Confidence 47788899999999999886
No 316
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=65.77 E-value=5.4 Score=28.98 Aligned_cols=23 Identities=13% Similarity=0.176 Sum_probs=19.2
Q ss_pred hhHHHHhhC--CCcEEEEeeCCCcC
Q 034688 2 STAVELLDQ--GHEVDIYELRSFIG 24 (87)
Q Consensus 2 ~aA~~L~~~--G~~V~v~E~~~~~G 24 (87)
+||..|++. .++|+|+|+++..+
T Consensus 1 saA~~l~~~~~~~~Vtlid~~~~~~ 25 (427)
T TIGR03385 1 SAASRVRRLDKESDIIVFEKTEDVS 25 (427)
T ss_pred CHHHHHHhhCCCCcEEEEEcCCcee
Confidence 689999886 47899999999764
No 317
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=65.68 E-value=6.8 Score=24.85 Aligned_cols=19 Identities=32% Similarity=0.471 Sum_probs=16.5
Q ss_pred hHHHHhhCCCcEEEEeeCC
Q 034688 3 TAVELLDQGHEVDIYELRS 21 (87)
Q Consensus 3 aA~~L~~~G~~V~v~E~~~ 21 (87)
.|..|.++|++|.+|++++
T Consensus 16 ~a~~L~~~g~~v~~~d~~~ 34 (163)
T PF03446_consen 16 MARNLAKAGYEVTVYDRSP 34 (163)
T ss_dssp HHHHHHHTTTEEEEEESSH
T ss_pred HHHHHHhcCCeEEeeccch
Confidence 4788999999999999774
No 318
>PRK07846 mycothione reductase; Reviewed
Probab=65.23 E-value=6 Score=29.30 Aligned_cols=21 Identities=19% Similarity=0.218 Sum_probs=16.4
Q ss_pred hhCCCcEEEEeeCCCcCceEEE
Q 034688 8 LDQGHEVDIYELRSFIGGKVAS 29 (87)
Q Consensus 8 ~~~G~~V~v~E~~~~~GG~~~s 29 (87)
++.|.+|.|+|+ +.+||-|-.
T Consensus 19 ~~~G~~V~lie~-~~~GGtC~n 39 (451)
T PRK07846 19 RFADKRIAIVEK-GTFGGTCLN 39 (451)
T ss_pred HHCCCeEEEEeC-CCCCCcccC
Confidence 356999999997 468887744
No 319
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=64.75 E-value=18 Score=21.06 Aligned_cols=38 Identities=21% Similarity=0.183 Sum_probs=25.0
Q ss_pred HHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeee
Q 034688 4 AVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISL 42 (87)
Q Consensus 4 A~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~ 42 (87)
..+|.++|+++...+. ...+|+...+++++|..+|+-.
T Consensus 80 ~~~l~~~G~~~~~~~~-~~~~~~~~~~~DPdG~~iEl~~ 117 (121)
T cd09013 80 VAALEASGLGIGWIEG-DPGHGKAYRFRSPDGHPMELYW 117 (121)
T ss_pred HHHHHHcCCccccccC-CCCCcceEEEECCCCCEEEEEE
Confidence 3467778987643332 3345666677888898888754
No 320
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=64.40 E-value=21 Score=20.36 Aligned_cols=35 Identities=14% Similarity=0.079 Sum_probs=23.6
Q ss_pred HHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeee
Q 034688 6 ELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEIS 41 (87)
Q Consensus 6 ~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G 41 (87)
+|.++|.+|.. +......|+...++|++|..++..
T Consensus 79 ~~~~~g~~v~~-~~~~~~~g~~~~~~DPdGn~ie~~ 113 (114)
T cd07261 79 EWQAKGVKIIQ-EPTEMDFGYTFVALDPDGHRLRVF 113 (114)
T ss_pred HHHHCCCeEec-CccccCCccEEEEECCCCCEEEee
Confidence 45567776643 445556677777788888888764
No 321
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=63.90 E-value=21 Score=20.85 Aligned_cols=38 Identities=11% Similarity=-0.093 Sum_probs=24.9
Q ss_pred HHHHhhCCCcE----EEEe-eCCCcCceEEEEeccCCeEEeee
Q 034688 4 AVELLDQGHEV----DIYE-LRSFIGGKVASFVCKRGNHIEIS 41 (87)
Q Consensus 4 A~~L~~~G~~V----~v~E-~~~~~GG~~~s~~~~~g~~~d~G 41 (87)
..+|.++|..+ ++.+ .....|+|...++|++|..++.|
T Consensus 70 ~~~l~~~G~~~~~~~~~~~~~~~~~g~r~f~~~DPdGn~~~~~ 112 (113)
T cd08356 70 YEHIKALGLPKKFPGVKLPPITQPWWGREFFLHDPSGVLWHIG 112 (113)
T ss_pred HHHHHHcCCcccccceecCccccCCCcEEEEEECCCccEEEee
Confidence 34667788753 1222 22346778888889999988775
No 322
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=63.79 E-value=7.8 Score=26.30 Aligned_cols=20 Identities=20% Similarity=0.356 Sum_probs=17.2
Q ss_pred hHHHHhhCCCcEEEEeeCCC
Q 034688 3 TAVELLDQGHEVDIYELRSF 22 (87)
Q Consensus 3 aA~~L~~~G~~V~v~E~~~~ 22 (87)
-|+.|+++|++|.|+|..++
T Consensus 22 LA~~la~~G~~VlliD~DpQ 41 (231)
T PRK13849 22 LCAALASDGKRVALFEADEN 41 (231)
T ss_pred HHHHHHhCCCcEEEEeCCCC
Confidence 47788999999999998765
No 323
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=63.11 E-value=8.3 Score=25.08 Aligned_cols=21 Identities=14% Similarity=0.018 Sum_probs=17.3
Q ss_pred hHHHHhhCCCcEEEEeeCCCc
Q 034688 3 TAVELLDQGHEVDIYELRSFI 23 (87)
Q Consensus 3 aA~~L~~~G~~V~v~E~~~~~ 23 (87)
.|+.|++.|++|.++|...+-
T Consensus 38 LA~~la~~G~rVllID~D~~~ 58 (204)
T TIGR01007 38 IAVAFAQAGYKTLLIDGDMRN 58 (204)
T ss_pred HHHHHHhCCCeEEEEeCCCCC
Confidence 467788999999999987653
No 324
>PF11080 DUF2622: Protein of unknown function (DUF2622); InterPro: IPR022597 This family is conserved in the Enterobacteriaceae family. The function is not known.
Probab=62.95 E-value=15 Score=22.06 Aligned_cols=39 Identities=15% Similarity=0.195 Sum_probs=28.9
Q ss_pred cCceEEEEeccCCeEEeeeeEEEeC----CChHHHHHHHHcCC
Q 034688 23 IGGKVASFVCKRGNHIEISLHVFFG----CYNNLFRLTKKVGA 61 (87)
Q Consensus 23 ~GG~~~s~~~~~g~~~d~G~~~~~~----~~~~~~~l~~~lg~ 61 (87)
.+|-..|..+.+|.++++|...|.- ....+.++.+.++.
T Consensus 32 ~~GF~~tl~D~~G~~HeLgtntfgl~S~l~~~eV~~la~~lae 74 (96)
T PF11080_consen 32 RAGFSTTLTDEDGNPHELGTNTFGLISALSAEEVAQLARGLAE 74 (96)
T ss_pred hcCceeEEecCCCCEeecCCCeEEEEecCCHHHHHHHHHHHhh
Confidence 4567778888889999999988852 23347778877773
No 325
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=62.89 E-value=6.7 Score=28.29 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=20.0
Q ss_pred ChhHHHHhhCCC--cEEEEeeCCCcC
Q 034688 1 MSTAVELLDQGH--EVDIYELRSFIG 24 (87)
Q Consensus 1 L~aA~~L~~~G~--~V~v~E~~~~~G 24 (87)
|+||..|++.|+ +|+|+++++...
T Consensus 16 ~~aA~~Lr~~~~~~~I~li~~e~~~~ 41 (396)
T PRK09754 16 AMAAASLRQQGFTGELHLFSDERHLP 41 (396)
T ss_pred HHHHHHHHhhCCCCCEEEeCCCCCCC
Confidence 578999999887 899999987654
No 326
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=62.81 E-value=28 Score=20.18 Aligned_cols=38 Identities=16% Similarity=0.158 Sum_probs=22.8
Q ss_pred HHhhCCCcEEEEeeCCCc-CceEEEEeccCCeEEeeeeE
Q 034688 6 ELLDQGHEVDIYELRSFI-GGKVASFVCKRGNHIEISLH 43 (87)
Q Consensus 6 ~L~~~G~~V~v~E~~~~~-GG~~~s~~~~~g~~~d~G~~ 43 (87)
+|.++|....+-+-.... |.+...++|++|++++.+.+
T Consensus 81 ~l~~~g~~~~~~~~~~~~~g~r~~~~~DPdGn~iei~~~ 119 (120)
T cd09011 81 KLKRYDNIEYVHPIKEHPWGQRVVRFYDPDKHIIEVGES 119 (120)
T ss_pred HHHhcCCcEEecCcccCCCccEEEEEECCCCCEEEEecc
Confidence 455556421222323333 55777788999999988653
No 327
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=62.48 E-value=19 Score=21.78 Aligned_cols=40 Identities=15% Similarity=0.023 Sum_probs=26.0
Q ss_pred HHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeE
Q 034688 4 AVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLH 43 (87)
Q Consensus 4 A~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~ 43 (87)
..+|.++|+.+.--+.....+++...+++.+|..+|...-
T Consensus 80 ~~~l~~~G~~i~~~~~~~~~~~~~~~~~DPdGn~iEl~~~ 119 (139)
T PRK04101 80 YQRLKENDVNILPGRERDERDKKSIYFTDPDGHKFEFHTG 119 (139)
T ss_pred HHHHHHCCceEcCCccccCCCceEEEEECCCCCEEEEEeC
Confidence 3467778887543222223467777788889999987443
No 328
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=62.28 E-value=6.9 Score=29.26 Aligned_cols=21 Identities=24% Similarity=0.379 Sum_probs=18.7
Q ss_pred ChhHHHHhhCCCcEEEEeeCC
Q 034688 1 MSTAVELLDQGHEVDIYELRS 21 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~ 21 (87)
+++|..|+++|++|.|+|+..
T Consensus 13 l~~A~~l~~~g~~v~lv~~~~ 33 (419)
T TIGR03378 13 LSCALRLAEAGKKCAIIAAGQ 33 (419)
T ss_pred HHHHHHHHHCCCCEEEEeCCC
Confidence 478999999999999999875
No 329
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=62.22 E-value=8.5 Score=28.63 Aligned_cols=27 Identities=26% Similarity=0.457 Sum_probs=23.9
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCcCceE
Q 034688 1 MSTAVELLDQGHEVDIYELRSFIGGKV 27 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~GG~~ 27 (87)
|+|+..|...|-.|+++|+...+||..
T Consensus 22 Lsasn~iin~gg~V~llek~~s~GGNS 48 (477)
T KOG2404|consen 22 LSASNDIINKGGIVILLEKAGSIGGNS 48 (477)
T ss_pred hhhHHHHHhcCCeEEEEeccCCcCCcc
Confidence 678888888887899999999999965
No 330
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=62.12 E-value=22 Score=21.33 Aligned_cols=36 Identities=17% Similarity=0.198 Sum_probs=23.6
Q ss_pred HHHHhhCCCcEEEEeeCCCc--CceEEEEeccCCeEEeee
Q 034688 4 AVELLDQGHEVDIYELRSFI--GGKVASFVCKRGNHIEIS 41 (87)
Q Consensus 4 A~~L~~~G~~V~v~E~~~~~--GG~~~s~~~~~g~~~d~G 41 (87)
..+|+++|+++. +-.++. +|+...+++++|..+|.-
T Consensus 83 ~~~l~~~gv~~~--~~~~~~~~~g~~~yf~DPdG~~iEl~ 120 (131)
T cd08364 83 TERIKALGVEMK--PPRPRVQGEGRSIYFYDFDNHLFELH 120 (131)
T ss_pred HHHHHHCCCEEe--cCCccccCCceEEEEECCCCCEEEEe
Confidence 346778897653 332222 467777788889988873
No 331
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=62.11 E-value=5.9 Score=29.91 Aligned_cols=18 Identities=22% Similarity=0.154 Sum_probs=16.1
Q ss_pred ChhHHHHhhCCCcEEEEe
Q 034688 1 MSTAVELLDQGHEVDIYE 18 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E 18 (87)
|++|++|.+.|++|.|+-
T Consensus 76 lv~AR~L~~~G~~V~v~~ 93 (462)
T PLN03049 76 LVAARHLHHFGYKPSICY 93 (462)
T ss_pred HHHHHHHHHCCCceEEEE
Confidence 579999999999999984
No 332
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=62.05 E-value=18 Score=20.74 Aligned_cols=36 Identities=17% Similarity=0.151 Sum_probs=23.2
Q ss_pred HhhCCCcEEEEeeC-CCcCceEEEEeccCCeEEeeeeE
Q 034688 7 LLDQGHEVDIYELR-SFIGGKVASFVCKRGNHIEISLH 43 (87)
Q Consensus 7 L~~~G~~V~v~E~~-~~~GG~~~s~~~~~g~~~d~G~~ 43 (87)
|.+.|.++. -|-. ..-|++...++|++|..+++..|
T Consensus 86 l~~~G~~~~-~~~~~~~~g~~~~~~~DP~G~~~~l~~~ 122 (122)
T cd07246 86 AVAAGATSV-MPPADQFWGDRYGGVRDPFGHRWWIATH 122 (122)
T ss_pred HHHCCCeEe-cCcccccccceEEEEECCCCCEEEEecC
Confidence 556677543 3322 34556677788888999887653
No 333
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=62.04 E-value=7.8 Score=28.33 Aligned_cols=25 Identities=20% Similarity=0.081 Sum_probs=20.4
Q ss_pred hhHHHHhhCCCcEEEEeeCCCcCce
Q 034688 2 STAVELLDQGHEVDIYELRSFIGGK 26 (87)
Q Consensus 2 ~aA~~L~~~G~~V~v~E~~~~~GG~ 26 (87)
.+|..|++.|.+|+|+|+.+++-++
T Consensus 171 e~A~~l~~~g~~Vtli~~~~~~l~~ 195 (438)
T PRK07251 171 EFAGLYNKLGSKVTVLDAASTILPR 195 (438)
T ss_pred HHHHHHHHcCCeEEEEecCCccCCC
Confidence 4677888999999999998877543
No 334
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=61.87 E-value=10 Score=26.69 Aligned_cols=21 Identities=10% Similarity=-0.053 Sum_probs=18.4
Q ss_pred hHHHHhhCCCcEEEEeeCCCc
Q 034688 3 TAVELLDQGHEVDIYELRSFI 23 (87)
Q Consensus 3 aA~~L~~~G~~V~v~E~~~~~ 23 (87)
.|+.|+++|++|.+++..++.
T Consensus 20 LA~~La~~g~rVLlID~Dpq~ 40 (296)
T TIGR02016 20 LSHMMAEMGKRVLQLGCDPKH 40 (296)
T ss_pred HHHHHHHCCCeEEEEEecCCC
Confidence 578889999999999998875
No 335
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=61.78 E-value=8.1 Score=26.71 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=17.5
Q ss_pred hhHHHHhhCCCcEEEEeeCCC
Q 034688 2 STAVELLDQGHEVDIYELRSF 22 (87)
Q Consensus 2 ~aA~~L~~~G~~V~v~E~~~~ 22 (87)
..|-.|+++|-+|+|+|+.++
T Consensus 21 ~LAs~la~~G~~V~lIDaDpn 41 (231)
T PF07015_consen 21 ALASELAARGARVALIDADPN 41 (231)
T ss_pred HHHHHHHHCCCeEEEEeCCCC
Confidence 456678899999999998876
No 336
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=61.69 E-value=7.7 Score=28.60 Aligned_cols=20 Identities=30% Similarity=0.084 Sum_probs=17.8
Q ss_pred hHHHHhhCCCcEEEEeeCCC
Q 034688 3 TAVELLDQGHEVDIYELRSF 22 (87)
Q Consensus 3 aA~~L~~~G~~V~v~E~~~~ 22 (87)
.|+.|++.|++|.|+|..++
T Consensus 142 LA~~LA~~G~rVLlIDlDpQ 161 (405)
T PRK13869 142 LAQYLALQGYRVLAVDLDPQ 161 (405)
T ss_pred HHHHHHhcCCceEEEcCCCC
Confidence 47788999999999999887
No 337
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=61.33 E-value=23 Score=21.79 Aligned_cols=40 Identities=23% Similarity=0.137 Sum_probs=25.5
Q ss_pred hHHHHhhCCCcEEEEeeCCCc-CceEEEEeccCCeEEeeee
Q 034688 3 TAVELLDQGHEVDIYELRSFI-GGKVASFVCKRGNHIEISL 42 (87)
Q Consensus 3 aA~~L~~~G~~V~v~E~~~~~-GG~~~s~~~~~g~~~d~G~ 42 (87)
+..+|+++|+++..-..+... +++..-+++++|..+|+-.
T Consensus 84 ~~~~l~~~Gv~i~~~p~~~~~~~~~~~yf~DPdG~~iEl~~ 124 (143)
T cd07243 84 AGDIISMNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFA 124 (143)
T ss_pred HHHHHHHcCCceEECCcCCCCCCceEEEEECCCCCEEEEec
Confidence 345788899987642212222 3566666788899998743
No 338
>CHL00175 minD septum-site determining protein; Validated
Probab=61.14 E-value=10 Score=26.01 Aligned_cols=23 Identities=9% Similarity=0.105 Sum_probs=19.4
Q ss_pred hHHHHhhCCCcEEEEeeCCCcCc
Q 034688 3 TAVELLDQGHEVDIYELRSFIGG 25 (87)
Q Consensus 3 aA~~L~~~G~~V~v~E~~~~~GG 25 (87)
.|+.|++.|++|.|+|..++.|.
T Consensus 36 LA~~La~~g~~vlliD~D~~~~~ 58 (281)
T CHL00175 36 LGMSIARLGYRVALIDADIGLRN 58 (281)
T ss_pred HHHHHHhCCCeEEEEeCCCCCCC
Confidence 47788999999999999887654
No 339
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=60.82 E-value=7.7 Score=27.20 Aligned_cols=21 Identities=24% Similarity=0.430 Sum_probs=17.7
Q ss_pred hhHHHHhhCCCcEEEEeeCCC
Q 034688 2 STAVELLDQGHEVDIYELRSF 22 (87)
Q Consensus 2 ~aA~~L~~~G~~V~v~E~~~~ 22 (87)
+.|..|+++|++|+++++++.
T Consensus 16 ~iA~~la~~G~~V~v~d~~~~ 36 (308)
T PRK06129 16 AWAIVFARAGHEVRLWDADPA 36 (308)
T ss_pred HHHHHHHHCCCeeEEEeCCHH
Confidence 457889999999999998763
No 340
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=60.72 E-value=6.6 Score=25.77 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=17.1
Q ss_pred ChhHHHHhhCCCcEEEEeeCCC
Q 034688 1 MSTAVELLDQGHEVDIYELRSF 22 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~ 22 (87)
|.+|..|++.|++|+.+|..+.
T Consensus 13 l~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 13 LPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp HHHHHHHHHTTSEEEEE-S-HH
T ss_pred HHHHHHHHhCCCEEEEEeCChH
Confidence 4678999999999999986654
No 341
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=60.62 E-value=7.7 Score=29.29 Aligned_cols=23 Identities=30% Similarity=0.303 Sum_probs=20.7
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCc
Q 034688 1 MSTAVELLDQGHEVDIYELRSFI 23 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~ 23 (87)
++||..|.+.|.+|+++|.++..
T Consensus 20 ~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 20 LAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred HHHHHHHHHCCCeEEEEcCCCCc
Confidence 47999999999999999977776
No 342
>PRK06724 hypothetical protein; Provisional
Probab=60.49 E-value=25 Score=21.36 Aligned_cols=40 Identities=18% Similarity=0.066 Sum_probs=24.6
Q ss_pred hHHHHhhCCCcEEEEeeCCC---cCc-eEEEEeccCCeEEeeeeE
Q 034688 3 TAVELLDQGHEVDIYELRSF---IGG-KVASFVCKRGNHIEISLH 43 (87)
Q Consensus 3 aA~~L~~~G~~V~v~E~~~~---~GG-~~~s~~~~~g~~~d~G~~ 43 (87)
...+|.++|.++.- +.... .+| +...+++++|..+|+-.|
T Consensus 80 ~~~~l~~~G~~~~~-~p~~~~~~~~g~~~~~f~DPdG~~iEl~~~ 123 (128)
T PRK06724 80 VAEFLSSTKIKIIR-GPMEMNHYSEGYYTIDFYDPNGFIIEVAYT 123 (128)
T ss_pred HHHHHHHCCCEEec-CCcccCCCCCCEEEEEEECCCCCEEEEEeC
Confidence 34567778887642 32222 244 455577889999998544
No 343
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=60.47 E-value=30 Score=19.81 Aligned_cols=36 Identities=22% Similarity=0.159 Sum_probs=22.6
Q ss_pred HHHHhhCCCcEEEEeeCCC-cCceEEEEeccCCeEEee
Q 034688 4 AVELLDQGHEVDIYELRSF-IGGKVASFVCKRGNHIEI 40 (87)
Q Consensus 4 A~~L~~~G~~V~v~E~~~~-~GG~~~s~~~~~g~~~d~ 40 (87)
..+|.++|.++. -+-... -|++....++++|..++.
T Consensus 81 ~~~l~~~G~~~~-~~~~~~~~g~~~~~~~DP~G~~ie~ 117 (119)
T cd08359 81 YERLKAEGLPIV-LPLRDEPWGQRHFIVRDPNGVLIDI 117 (119)
T ss_pred HHHHHhcCCCee-eccccCCCcceEEEEECCCCCEEEE
Confidence 456667787653 232333 355777788888888765
No 344
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=59.75 E-value=30 Score=19.77 Aligned_cols=36 Identities=22% Similarity=0.273 Sum_probs=23.0
Q ss_pred HHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEee
Q 034688 4 AVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEI 40 (87)
Q Consensus 4 A~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~ 40 (87)
..+|.++|..+.--. ....||+...+++++|..+|.
T Consensus 84 ~~~l~~~g~~~~~~~-~~~~~~~~~~~~DP~G~~ie~ 119 (122)
T cd08354 84 EAHLEAKGVAIESEV-QWPRGGRSLYFRDPDGNLLEL 119 (122)
T ss_pred HHHHHhcCCceeccc-cCCCCeeEEEEECCCCCEEEE
Confidence 345667787653222 135677777778888888775
No 345
>PRK10291 glyoxalase I; Provisional
Probab=59.73 E-value=23 Score=20.93 Aligned_cols=39 Identities=23% Similarity=0.268 Sum_probs=23.8
Q ss_pred hHHHHhhCCCcEEEEeeCCCcCc-e-EEEEeccCCeEEeeee
Q 034688 3 TAVELLDQGHEVDIYELRSFIGG-K-VASFVCKRGNHIEISL 42 (87)
Q Consensus 3 aA~~L~~~G~~V~v~E~~~~~GG-~-~~s~~~~~g~~~d~G~ 42 (87)
+..+|.++|+++.. +..+..+| + ..-+++.+|..+++-.
T Consensus 79 ~~~~l~~~G~~~~~-~~~~~~~~~~~~~~i~DPdG~~iel~~ 119 (129)
T PRK10291 79 ACEKIRQNGGNVTR-EAGPVKGGTTVIAFVEDPDGYKIELIE 119 (129)
T ss_pred HHHHHHHcCCcccc-CCcccCCCceEEEEEECCCCCEEEEEE
Confidence 44567778987653 33344444 3 2334788899988754
No 346
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=59.70 E-value=11 Score=25.07 Aligned_cols=23 Identities=13% Similarity=0.111 Sum_probs=18.8
Q ss_pred hHHHHhhCCCcEEEEeeCCCcCc
Q 034688 3 TAVELLDQGHEVDIYELRSFIGG 25 (87)
Q Consensus 3 aA~~L~~~G~~V~v~E~~~~~GG 25 (87)
.|+.|++.|++|.++|..++.|.
T Consensus 22 lA~~la~~g~~vlliD~D~~~~~ 44 (261)
T TIGR01968 22 LGTALARLGKKVVLIDADIGLRN 44 (261)
T ss_pred HHHHHHHcCCeEEEEECCCCCCC
Confidence 47788899999999998876443
No 347
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=59.00 E-value=31 Score=19.54 Aligned_cols=38 Identities=29% Similarity=0.262 Sum_probs=24.8
Q ss_pred hHHHHhhCCCcEEEEeeCCCcCceEEE-EeccCCeEEee
Q 034688 3 TAVELLDQGHEVDIYELRSFIGGKVAS-FVCKRGNHIEI 40 (87)
Q Consensus 3 aA~~L~~~G~~V~v~E~~~~~GG~~~s-~~~~~g~~~d~ 40 (87)
+..+|+++|+++.---.+...++.... +++++|..+|.
T Consensus 90 ~~~~l~~~g~~~~~~~~~~~~~~~~~~y~~Dp~G~~iE~ 128 (128)
T PF00903_consen 90 AYERLKAQGVEIVEEPDRYYFGSGYSFYFRDPDGNLIEF 128 (128)
T ss_dssp HHHHHHHTTGEEEEEEEEHSTTCEEEEEEEETTSEEEEE
T ss_pred HHHHHhhcCccEEecCCCCCCCCEEEEEEECCCCCEEEC
Confidence 456778889877655444455555543 77788888774
No 348
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=58.92 E-value=7.7 Score=27.11 Aligned_cols=21 Identities=19% Similarity=0.175 Sum_probs=17.2
Q ss_pred hHHHHhhCCCcEEEEeeCCCc
Q 034688 3 TAVELLDQGHEVDIYELRSFI 23 (87)
Q Consensus 3 aA~~L~~~G~~V~v~E~~~~~ 23 (87)
-|..|+++|++|+++|..+..
T Consensus 20 iA~~~a~~G~~V~l~d~~~~~ 40 (286)
T PRK07819 20 IAEVCARAGVDVLVFETTEEL 40 (286)
T ss_pred HHHHHHhCCCEEEEEECCHHH
Confidence 467788999999999877664
No 349
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=58.89 E-value=29 Score=19.73 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=23.6
Q ss_pred HHhhCCCcEEEEeeCCCc-CceEEEEeccCCeEEeeee
Q 034688 6 ELLDQGHEVDIYELRSFI-GGKVASFVCKRGNHIEISL 42 (87)
Q Consensus 6 ~L~~~G~~V~v~E~~~~~-GG~~~s~~~~~g~~~d~G~ 42 (87)
.|.+.|.++.- +-.... ||+....++.+|..++...
T Consensus 84 ~l~~~G~~~~~-~~~~~~~g~~~~~~~DP~Gn~iei~~ 120 (121)
T cd07251 84 RAAAAGATIVK-PPQDVFWGGYSGYFADPDGHLWEVAH 120 (121)
T ss_pred HHHhCCCEEec-CCccCCCCceEEEEECCCCCEEEEee
Confidence 45667877643 333333 5777778888898888753
No 350
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=58.72 E-value=7.2 Score=30.19 Aligned_cols=18 Identities=17% Similarity=0.045 Sum_probs=16.2
Q ss_pred ChhHHHHhhCCCcEEEEe
Q 034688 1 MSTAVELLDQGHEVDIYE 18 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E 18 (87)
|+||++|.+.|++|+|+-
T Consensus 152 LVaAR~L~~~G~~V~V~~ 169 (544)
T PLN02918 152 LVAARHLHHFGYKPFVCY 169 (544)
T ss_pred HHHHHHHHHCCCceEEEE
Confidence 579999999999999984
No 351
>PRK13604 luxD acyl transferase; Provisional
Probab=58.67 E-value=15 Score=26.43 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=17.8
Q ss_pred hHHHHhhCCCcEEEEeeCCCcC
Q 034688 3 TAVELLDQGHEVDIYELRSFIG 24 (87)
Q Consensus 3 aA~~L~~~G~~V~v~E~~~~~G 24 (87)
-|..|+++|+.|..||.+...|
T Consensus 56 ~A~~La~~G~~vLrfD~rg~~G 77 (307)
T PRK13604 56 LAEYLSSNGFHVIRYDSLHHVG 77 (307)
T ss_pred HHHHHHHCCCEEEEecCCCCCC
Confidence 4788999999999999655433
No 352
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=58.26 E-value=9.8 Score=28.15 Aligned_cols=23 Identities=35% Similarity=0.195 Sum_probs=19.1
Q ss_pred hhHHHHhhCCCcEEEEeeCCCcC
Q 034688 2 STAVELLDQGHEVDIYELRSFIG 24 (87)
Q Consensus 2 ~aA~~L~~~G~~V~v~E~~~~~G 24 (87)
.+|..|++.|.+|+|+|+.+++-
T Consensus 194 E~A~~l~~~g~~Vtli~~~~~il 216 (472)
T PRK05976 194 EWASMLADFGVEVTVVEAADRIL 216 (472)
T ss_pred HHHHHHHHcCCeEEEEEecCccC
Confidence 46788888999999999988753
No 353
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=58.23 E-value=9.6 Score=28.06 Aligned_cols=24 Identities=21% Similarity=0.134 Sum_probs=19.7
Q ss_pred hhHHHHhhCCCcEEEEeeCCCcCc
Q 034688 2 STAVELLDQGHEVDIYELRSFIGG 25 (87)
Q Consensus 2 ~aA~~L~~~G~~V~v~E~~~~~GG 25 (87)
-+|..|++.|.+|+|+|+.+++..
T Consensus 180 E~A~~l~~~g~~Vtli~~~~~~l~ 203 (463)
T TIGR02053 180 ELAQAFARLGSEVTILQRSDRLLP 203 (463)
T ss_pred HHHHHHHHcCCcEEEEEcCCcCCC
Confidence 467888899999999999877643
No 354
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=58.02 E-value=8.8 Score=28.62 Aligned_cols=46 Identities=22% Similarity=0.293 Sum_probs=27.7
Q ss_pred hhHHHHhhCC---CcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCc
Q 034688 2 STAVELLDQG---HEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADEN 64 (87)
Q Consensus 2 ~aA~~L~~~G---~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~ 64 (87)
.||..|++.+ ++|+|+|+...+- +..|=..+ |.+..+++.+|+.+.
T Consensus 13 ~~A~~L~~~~~~~~~v~lie~~~~~~-------------~~vGe~~~----p~~~~~~~~lgi~e~ 61 (454)
T PF04820_consen 13 MAAAALARAGPDALSVTLIESPDIPR-------------IGVGESTL----PSLRPFLRRLGIDEA 61 (454)
T ss_dssp HHHHHHHHHCTCSSEEEEEE-SSS----------------SSEEE------THHHHCHHHHT--HH
T ss_pred HHHHHHHHhCCCCcEEEEEecCCCCC-------------CCccccch----HHHHHHHHHcCCChH
Confidence 4678888887 8999999775431 22333222 667778888888753
No 355
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=57.48 E-value=10 Score=27.82 Aligned_cols=23 Identities=22% Similarity=0.160 Sum_probs=19.4
Q ss_pred hhHHHHhhCCCcEEEEeeCCCcC
Q 034688 2 STAVELLDQGHEVDIYELRSFIG 24 (87)
Q Consensus 2 ~aA~~L~~~G~~V~v~E~~~~~G 24 (87)
.+|..|++.|.+|+|+|+.+++.
T Consensus 184 e~A~~l~~~g~~Vtli~~~~~~l 206 (461)
T TIGR01350 184 EFASIFASLGSKVTVIEMLDRIL 206 (461)
T ss_pred HHHHHHHHcCCcEEEEEcCCCCC
Confidence 46778889999999999988764
No 356
>cd00431 cysteine_hydrolases Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle. It also contains isochorismatase, an enzyme that catalyzes the conversion of isochorismate to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of the vinyl ether bond, and other related enzymes with unknown function.
Probab=57.40 E-value=8.5 Score=23.92 Aligned_cols=18 Identities=39% Similarity=0.471 Sum_probs=15.7
Q ss_pred ChhHHHHhhCCCcEEEEe
Q 034688 1 MSTAVELLDQGHEVDIYE 18 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E 18 (87)
+++|..+.++|++|+|++
T Consensus 125 ~~T~~~a~~~G~~v~vi~ 142 (161)
T cd00431 125 LATARDALDLGYRVIVVE 142 (161)
T ss_pred HHHHHHHHHCCCEEEEeh
Confidence 367888999999999997
No 357
>PRK07512 L-aspartate oxidase; Provisional
Probab=57.38 E-value=8.4 Score=29.09 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=17.8
Q ss_pred ChhHHHHhhCCCcEEEEeeCCC-cCc
Q 034688 1 MSTAVELLDQGHEVDIYELRSF-IGG 25 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~-~GG 25 (87)
|+||..++ |.+|+|+||.+. .||
T Consensus 22 l~AAl~Aa--~~~V~lleK~~~~~gg 45 (513)
T PRK07512 22 LMAALKLA--PRPVVVLSPAPLGEGA 45 (513)
T ss_pred HHHHHHhC--cCCEEEEECCCCCCCc
Confidence 46787775 579999999987 444
No 358
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=57.26 E-value=11 Score=28.36 Aligned_cols=22 Identities=23% Similarity=0.110 Sum_probs=18.9
Q ss_pred HHHHhhCCCcEEEEeeCCCcCc
Q 034688 4 AVELLDQGHEVDIYELRSFIGG 25 (87)
Q Consensus 4 A~~L~~~G~~V~v~E~~~~~GG 25 (87)
|..+++.|.+|||+|+.+++-.
T Consensus 189 a~~~~~LG~~VTiie~~~~iLp 210 (454)
T COG1249 189 ASVFAALGSKVTVVERGDRILP 210 (454)
T ss_pred HHHHHHcCCcEEEEecCCCCCC
Confidence 5667789999999999999876
No 359
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=57.23 E-value=9.7 Score=25.90 Aligned_cols=20 Identities=20% Similarity=0.247 Sum_probs=17.2
Q ss_pred hhHHHHhhCCCcEEEEeeCC
Q 034688 2 STAVELLDQGHEVDIYELRS 21 (87)
Q Consensus 2 ~aA~~L~~~G~~V~v~E~~~ 21 (87)
..|+.|+++|++|+++.+.+
T Consensus 5 ~~a~~L~~~G~~V~l~~r~~ 24 (293)
T TIGR00745 5 LYGAYLARAGHDVTLLARGE 24 (293)
T ss_pred HHHHHHHhCCCcEEEEecHH
Confidence 46889999999999998864
No 360
>cd01015 CSHase N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia. CSHase is involved in one of the two alternative pathways for creatinine degradation to glycine in microorganisms.This CSHase-containing pathway degrades creatinine via N-methylhydantoin N-carbamoylsarcosine and sarcosine to glycine. Enzymes of this pathway are used in the diagnosis for renal disfunction, for determining creatinine levels in urine and serum.
Probab=57.16 E-value=9.3 Score=24.56 Aligned_cols=18 Identities=22% Similarity=0.331 Sum_probs=15.9
Q ss_pred ChhHHHHhhCCCcEEEEe
Q 034688 1 MSTAVELLDQGHEVDIYE 18 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E 18 (87)
+++|..+.++||+|+|++
T Consensus 129 ~~Ta~~A~~~Gy~v~vv~ 146 (179)
T cd01015 129 RATAVDAMQHGFRPIVVR 146 (179)
T ss_pred HHHHHHHHHCCCeEEEee
Confidence 367889999999999998
No 361
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=56.72 E-value=11 Score=27.73 Aligned_cols=20 Identities=25% Similarity=0.094 Sum_probs=16.6
Q ss_pred hHHHHhhCCCcEEEEee-CCC
Q 034688 3 TAVELLDQGHEVDIYEL-RSF 22 (87)
Q Consensus 3 aA~~L~~~G~~V~v~E~-~~~ 22 (87)
.|+.|++.|++|.|+|. .++
T Consensus 127 LA~~LA~~G~rVLlID~~DpQ 147 (388)
T PRK13705 127 LAQDLALKGLRVLLVEGNDPQ 147 (388)
T ss_pred HHHHHHhcCCCeEEEcCCCCC
Confidence 47788999999999996 554
No 362
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=56.67 E-value=11 Score=27.65 Aligned_cols=20 Identities=40% Similarity=0.199 Sum_probs=16.6
Q ss_pred hHHHHhhCCCcEEEEee-CCC
Q 034688 3 TAVELLDQGHEVDIYEL-RSF 22 (87)
Q Consensus 3 aA~~L~~~G~~V~v~E~-~~~ 22 (87)
.|+.|+++|++|+|+|. .++
T Consensus 127 LA~~LA~~G~rVLlIDl~DpQ 147 (387)
T PHA02519 127 TAQWLALQGHRVLLIEGNDPQ 147 (387)
T ss_pred HHHHHHhCCCcEEEEeCCCCC
Confidence 47788899999999997 554
No 363
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=56.06 E-value=11 Score=27.50 Aligned_cols=20 Identities=30% Similarity=0.396 Sum_probs=16.9
Q ss_pred hhHHHHhhCCCcEEEEeeCC
Q 034688 2 STAVELLDQGHEVDIYELRS 21 (87)
Q Consensus 2 ~aA~~L~~~G~~V~v~E~~~ 21 (87)
..|..|+++|++|+||+++.
T Consensus 34 pMArnLlkAGheV~V~Drnr 53 (341)
T TIGR01724 34 RMAIEFAMAGHDVVLAEPNR 53 (341)
T ss_pred HHHHHHHHCCCEEEEEeCCh
Confidence 46889999999999998754
No 364
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=55.94 E-value=11 Score=26.90 Aligned_cols=24 Identities=17% Similarity=0.227 Sum_probs=19.6
Q ss_pred hhHHHHhhCCCcEEEEeeCCCcCc
Q 034688 2 STAVELLDQGHEVDIYELRSFIGG 25 (87)
Q Consensus 2 ~aA~~L~~~G~~V~v~E~~~~~GG 25 (87)
-+|..|++.|.+|+++|+.+++..
T Consensus 155 e~A~~L~~~g~~Vtlv~~~~~~l~ 178 (377)
T PRK04965 155 ELAMDLCRAGKAVTLVDNAASLLA 178 (377)
T ss_pred HHHHHHHhcCCeEEEEecCCcccc
Confidence 367888899999999999887643
No 365
>PRK11670 antiporter inner membrane protein; Provisional
Probab=55.88 E-value=12 Score=27.24 Aligned_cols=21 Identities=24% Similarity=0.344 Sum_probs=17.5
Q ss_pred hHHHHhhCCCcEEEEeeCCCc
Q 034688 3 TAVELLDQGHEVDIYELRSFI 23 (87)
Q Consensus 3 aA~~L~~~G~~V~v~E~~~~~ 23 (87)
.|+.|++.|++|.|+|...+-
T Consensus 128 LA~aLA~~G~rVlLID~D~qg 148 (369)
T PRK11670 128 LALALAAEGAKVGILDADIYG 148 (369)
T ss_pred HHHHHHHCCCcEEEEeCCCCC
Confidence 477889999999999987653
No 366
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=55.61 E-value=12 Score=22.95 Aligned_cols=24 Identities=21% Similarity=0.301 Sum_probs=16.7
Q ss_pred hhHHHHhhCCCcEEEEeeCCCcCc
Q 034688 2 STAVELLDQGHEVDIYELRSFIGG 25 (87)
Q Consensus 2 ~aA~~L~~~G~~V~v~E~~~~~GG 25 (87)
..|..|++.|.+|.++|....-++
T Consensus 20 ~lA~~la~~~~~Vllid~~~~~~~ 43 (157)
T PF13614_consen 20 NLAAALARKGKKVLLIDFDFFSPS 43 (157)
T ss_dssp HHHHHHHHTTT-EEEEE--SSS-H
T ss_pred HHHHHHHhcCCCeEEEECCCCCCC
Confidence 357888999999999998887775
No 367
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=55.37 E-value=11 Score=22.28 Aligned_cols=20 Identities=30% Similarity=0.330 Sum_probs=13.3
Q ss_pred hHHHHhhCCCcEEEEeeCCC
Q 034688 3 TAVELLDQGHEVDIYELRSF 22 (87)
Q Consensus 3 aA~~L~~~G~~V~v~E~~~~ 22 (87)
.|..|+++|++|+|+-.++.
T Consensus 10 l~~~L~~~G~~V~v~~~~~~ 29 (160)
T PF13579_consen 10 LARALAARGHEVTVVTPQPD 29 (160)
T ss_dssp HHHHHHHTT-EEEEEEE---
T ss_pred HHHHHHHCCCEEEEEecCCC
Confidence 46788899999999964433
No 368
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=55.29 E-value=12 Score=25.62 Aligned_cols=20 Identities=20% Similarity=0.037 Sum_probs=16.8
Q ss_pred hHHHHhh-CCCcEEEEeeCCC
Q 034688 3 TAVELLD-QGHEVDIYELRSF 22 (87)
Q Consensus 3 aA~~L~~-~G~~V~v~E~~~~ 22 (87)
.|+.|++ .|++|.|+|..++
T Consensus 22 LA~~La~~~G~rvLliD~Dpq 42 (275)
T PRK13233 22 TAAAMAYFHDKKVFIHGCDPK 42 (275)
T ss_pred HHHHHHHhcCCeEEEeccCcC
Confidence 4778897 6999999997776
No 369
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=55.24 E-value=9.6 Score=24.93 Aligned_cols=20 Identities=25% Similarity=0.298 Sum_probs=15.3
Q ss_pred hhHHHHhhCCCcEEEEeeCC
Q 034688 2 STAVELLDQGHEVDIYELRS 21 (87)
Q Consensus 2 ~aA~~L~~~G~~V~v~E~~~ 21 (87)
.+|..|+..|-+|+|.|..|
T Consensus 37 g~A~~lr~~Ga~V~V~e~DP 56 (162)
T PF00670_consen 37 GIARALRGLGARVTVTEIDP 56 (162)
T ss_dssp HHHHHHHHTT-EEEEE-SSH
T ss_pred HHHHHHhhCCCEEEEEECCh
Confidence 47889999999999999776
No 370
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=55.18 E-value=14 Score=25.95 Aligned_cols=24 Identities=17% Similarity=0.224 Sum_probs=20.3
Q ss_pred hHHHHhhCCCcEEEEeeCCCcCce
Q 034688 3 TAVELLDQGHEVDIYELRSFIGGK 26 (87)
Q Consensus 3 aA~~L~~~G~~V~v~E~~~~~GG~ 26 (87)
.|+.|++.|.+|.++|..++-|+.
T Consensus 114 LA~~la~~g~~VlLvD~D~~~~~~ 137 (322)
T TIGR03815 114 LALAAARHGLRTLLVDADPWGGGL 137 (322)
T ss_pred HHHHHHhcCCCEEEEecCCCCCCe
Confidence 477888999999999999887764
No 371
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=55.17 E-value=37 Score=19.78 Aligned_cols=37 Identities=22% Similarity=0.118 Sum_probs=23.6
Q ss_pred HHHHhhCCCcEEEEee---CCCcCceEEEEeccCCeEEee
Q 034688 4 AVELLDQGHEVDIYEL---RSFIGGKVASFVCKRGNHIEI 40 (87)
Q Consensus 4 A~~L~~~G~~V~v~E~---~~~~GG~~~s~~~~~g~~~d~ 40 (87)
..+|.++|+++.--+. .+.-+++...+++++|..+|.
T Consensus 75 ~~~l~~~Gv~~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~ 114 (120)
T cd07252 75 AARLRAAGVAVEEGSAELAAERGVEGLIRFADPDGNRHEL 114 (120)
T ss_pred HHHHHHcCCeEEEcCHHHHhhCCCcEEEEEECCCCCEEEE
Confidence 4467778887643221 123345677788888998886
No 372
>PLN02367 lactoylglutathione lyase
Probab=55.11 E-value=37 Score=23.46 Aligned_cols=37 Identities=22% Similarity=0.100 Sum_probs=24.8
Q ss_pred hHHHHhhCCCcEEEEeeCCCcC--ceEEEEeccCCeEEeeee
Q 034688 3 TAVELLDQGHEVDIYELRSFIG--GKVASFVCKRGNHIEISL 42 (87)
Q Consensus 3 aA~~L~~~G~~V~v~E~~~~~G--G~~~s~~~~~g~~~d~G~ 42 (87)
+..+|.++|+++. +.++.| +++.-+++.+|+++|+..
T Consensus 183 a~erL~a~Gv~~v---~~P~~g~~~riaFIkDPDGn~IEL~e 221 (233)
T PLN02367 183 ACERFEELGVEFV---KKPNDGKMKGIAFIKDPDGYWIEIFD 221 (233)
T ss_pred HHHHHHHCCCEEE---eCCccCCceEEEEEECCCCCEEEEEe
Confidence 4456778898876 233333 455567788899999864
No 373
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=55.09 E-value=32 Score=20.52 Aligned_cols=38 Identities=18% Similarity=0.206 Sum_probs=23.2
Q ss_pred hHHHHhhCCCcEEEEeeCCC-cCceEEEEeccCCeEEeee
Q 034688 3 TAVELLDQGHEVDIYELRSF-IGGKVASFVCKRGNHIEIS 41 (87)
Q Consensus 3 aA~~L~~~G~~V~v~E~~~~-~GG~~~s~~~~~g~~~d~G 41 (87)
+..+|.++|+++.- +-... -|.|..-+++++|..+|+-
T Consensus 101 ~~~~l~~~G~~~~~-~~~~~~~~~r~~~~~DPdG~~iEl~ 139 (142)
T cd08353 101 RVARLRKHGAELVG-EVVQYENSYRLCYIRGPEGILIELA 139 (142)
T ss_pred HHHHHHHCCCceeC-CceecCCCeEEEEEECCCCCEEEee
Confidence 34467778887653 21122 3456666778889888874
No 374
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=54.89 E-value=15 Score=27.86 Aligned_cols=28 Identities=21% Similarity=0.321 Sum_probs=24.8
Q ss_pred hhHHHHhhCCCcEEEEeeCCCcCceEEE
Q 034688 2 STAVELLDQGHEVDIYELRSFIGGKVAS 29 (87)
Q Consensus 2 ~aA~~L~~~G~~V~v~E~~~~~GG~~~s 29 (87)
.||..-++.|++...+|++..+||-|--
T Consensus 53 vAAikAaQlGlkTacvEkr~~LGGTcLn 80 (506)
T KOG1335|consen 53 VAAIKAAQLGLKTACVEKRGTLGGTCLN 80 (506)
T ss_pred HHHHHHHHhcceeEEEeccCccCceeee
Confidence 4788889999999999999999998743
No 375
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=54.87 E-value=9.2 Score=24.88 Aligned_cols=20 Identities=25% Similarity=0.305 Sum_probs=15.4
Q ss_pred hHHHHhhCCCcEEEEeeCCC
Q 034688 3 TAVELLDQGHEVDIYELRSF 22 (87)
Q Consensus 3 aA~~L~~~G~~V~v~E~~~~ 22 (87)
-|..++..|++|+++|.++.
T Consensus 14 iA~~~a~~G~~V~l~d~~~~ 33 (180)
T PF02737_consen 14 IAALFARAGYEVTLYDRSPE 33 (180)
T ss_dssp HHHHHHHTTSEEEEE-SSHH
T ss_pred HHHHHHhCCCcEEEEECChH
Confidence 46778889999999987665
No 376
>PRK10565 putative carbohydrate kinase; Provisional
Probab=54.67 E-value=9.2 Score=29.12 Aligned_cols=18 Identities=17% Similarity=0.121 Sum_probs=15.8
Q ss_pred ChhHHHHhhCCCcEEEEe
Q 034688 1 MSTAVELLDQGHEVDIYE 18 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E 18 (87)
+++|++|.++|++|.||=
T Consensus 77 ~v~AR~L~~~G~~V~v~~ 94 (508)
T PRK10565 77 YVVARLAQAAGIDVTLLA 94 (508)
T ss_pred HHHHHHHHHCCCceEEEE
Confidence 478999999999999983
No 377
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=54.48 E-value=37 Score=18.94 Aligned_cols=36 Identities=31% Similarity=0.338 Sum_probs=21.9
Q ss_pred HHHHhhCCCcEEEEeeCCCc-CceEEEEeccCCeEEee
Q 034688 4 AVELLDQGHEVDIYELRSFI-GGKVASFVCKRGNHIEI 40 (87)
Q Consensus 4 A~~L~~~G~~V~v~E~~~~~-GG~~~s~~~~~g~~~d~ 40 (87)
.-+|.++|.++.- +-.+.. |.+...+.+.+|..++.
T Consensus 71 ~~~l~~~G~~~~~-~~~~~~~g~~~~~~~DPdG~~ie~ 107 (108)
T PF12681_consen 71 YERLKELGAEIVT-EPRDDPWGQRSFYFIDPDGNRIEF 107 (108)
T ss_dssp HHHHHHTTSEEEE-EEEEETTSEEEEEEE-TTS-EEEE
T ss_pred HHHHHHCCCeEee-CCEEcCCCeEEEEEECCCCCEEEe
Confidence 4467788877543 333344 44777788888888764
No 378
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=54.00 E-value=11 Score=26.77 Aligned_cols=21 Identities=38% Similarity=0.548 Sum_probs=18.6
Q ss_pred hHHHHhhCCCcEEEEeeCCCc
Q 034688 3 TAVELLDQGHEVDIYELRSFI 23 (87)
Q Consensus 3 aA~~L~~~G~~V~v~E~~~~~ 23 (87)
.|.+|.++|++|+||++.+..
T Consensus 15 mA~~L~~aG~~v~v~~r~~~k 35 (286)
T COG2084 15 MAANLLKAGHEVTVYNRTPEK 35 (286)
T ss_pred HHHHHHHCCCEEEEEeCChhh
Confidence 578999999999999988766
No 379
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=53.67 E-value=40 Score=19.12 Aligned_cols=38 Identities=11% Similarity=-0.031 Sum_probs=23.5
Q ss_pred HHHHhhCCCcEEEEeeCCCc-CceEEEEeccCCeEEeeee
Q 034688 4 AVELLDQGHEVDIYELRSFI-GGKVASFVCKRGNHIEISL 42 (87)
Q Consensus 4 A~~L~~~G~~V~v~E~~~~~-GG~~~s~~~~~g~~~d~G~ 42 (87)
..+|.++|.++.. +-.... |++...+.+.+|..++...
T Consensus 72 ~~~l~~~G~~~~~-~~~~~~~g~~~~~~~DP~Gn~i~~~~ 110 (112)
T cd07238 72 LARAVAAGFAIVY-GPTDEPWGVRRFFVRDPFGKLVNILT 110 (112)
T ss_pred HHHHHhcCCeEec-CCccCCCceEEEEEECCCCCEEEEEE
Confidence 3456778887643 333333 4466667778888887753
No 380
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=53.23 E-value=19 Score=20.56 Aligned_cols=20 Identities=25% Similarity=0.310 Sum_probs=17.3
Q ss_pred hHHHHhhCCCcEEEEeeCCC
Q 034688 3 TAVELLDQGHEVDIYELRSF 22 (87)
Q Consensus 3 aA~~L~~~G~~V~v~E~~~~ 22 (87)
.|+.|+++|.+|.++|..+.
T Consensus 20 la~~~~~~~~~vl~~d~d~~ 39 (104)
T cd02042 20 LAAALARRGKRVLLIDLDPQ 39 (104)
T ss_pred HHHHHHhCCCcEEEEeCCCC
Confidence 57778889999999998877
No 381
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=53.21 E-value=12 Score=25.90 Aligned_cols=20 Identities=10% Similarity=0.262 Sum_probs=16.6
Q ss_pred hhHHHHhhCCCcEEEEeeCC
Q 034688 2 STAVELLDQGHEVDIYELRS 21 (87)
Q Consensus 2 ~aA~~L~~~G~~V~v~E~~~ 21 (87)
+.|..|+++|++|++++.++
T Consensus 15 ~iA~~la~~G~~V~~~d~~~ 34 (288)
T PRK09260 15 GIAYVFAVSGFQTTLVDIKQ 34 (288)
T ss_pred HHHHHHHhCCCcEEEEeCCH
Confidence 45778899999999998763
No 382
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=53.16 E-value=14 Score=26.80 Aligned_cols=20 Identities=25% Similarity=0.071 Sum_probs=17.6
Q ss_pred hHHHHhhCCCcEEEEeeCCC
Q 034688 3 TAVELLDQGHEVDIYELRSF 22 (87)
Q Consensus 3 aA~~L~~~G~~V~v~E~~~~ 22 (87)
.|+.|++.|++|.|+|..++
T Consensus 125 LA~~La~~G~rVLlID~DpQ 144 (387)
T TIGR03453 125 LAQYLALRGYRVLAIDLDPQ 144 (387)
T ss_pred HHHHHHhcCCCEEEEecCCC
Confidence 46788899999999999887
No 383
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=53.12 E-value=44 Score=19.38 Aligned_cols=35 Identities=20% Similarity=0.119 Sum_probs=22.0
Q ss_pred HHhhCCCcEEEEeeC---CCcCceEEEEeccCCeEEee
Q 034688 6 ELLDQGHEVDIYELR---SFIGGKVASFVCKRGNHIEI 40 (87)
Q Consensus 6 ~L~~~G~~V~v~E~~---~~~GG~~~s~~~~~g~~~d~ 40 (87)
+|.++|+.+.--... ...|++...+++.+|..+|.
T Consensus 88 ~l~~~g~~~~~~~~~~~~~~~~~~~~~~~DpdG~~ie~ 125 (128)
T cd07242 88 RLAKRGAEILYAPREPYAGGPGYYALFFEDPDGIRLEL 125 (128)
T ss_pred HHHHcCCeEecCCcccccCCCcEEEEEEECCCCcEEEE
Confidence 466677754443222 23466777778888988876
No 384
>PRK10818 cell division inhibitor MinD; Provisional
Probab=52.98 E-value=17 Score=24.63 Aligned_cols=22 Identities=14% Similarity=0.203 Sum_probs=18.7
Q ss_pred hHHHHhhCCCcEEEEeeCCCcC
Q 034688 3 TAVELLDQGHEVDIYELRSFIG 24 (87)
Q Consensus 3 aA~~L~~~G~~V~v~E~~~~~G 24 (87)
.|+.|++.|++|.|+|..++.+
T Consensus 23 lA~~la~~g~~vllvD~D~~~~ 44 (270)
T PRK10818 23 IATGLAQKGKKTVVIDFDIGLR 44 (270)
T ss_pred HHHHHHHCCCeEEEEECCCCCC
Confidence 5778889999999999988644
No 385
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=52.89 E-value=13 Score=27.26 Aligned_cols=23 Identities=30% Similarity=0.118 Sum_probs=19.1
Q ss_pred hHHHHhhCCCcEEEEeeCCCcCc
Q 034688 3 TAVELLDQGHEVDIYELRSFIGG 25 (87)
Q Consensus 3 aA~~L~~~G~~V~v~E~~~~~GG 25 (87)
+|..|++.|.+|+++|+.+++..
T Consensus 187 ~A~~l~~~g~~Vtli~~~~~~l~ 209 (462)
T PRK06416 187 FASAYASLGAEVTIVEALPRILP 209 (462)
T ss_pred HHHHHHHcCCeEEEEEcCCCcCC
Confidence 57788889999999999887643
No 386
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=52.85 E-value=13 Score=27.30 Aligned_cols=23 Identities=26% Similarity=0.250 Sum_probs=19.4
Q ss_pred ChhHHHHhhCCCcEEEEeeCCCc
Q 034688 1 MSTAVELLDQGHEVDIYELRSFI 23 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~~ 23 (87)
+++|..|+++|++|+++|..+..
T Consensus 18 ~~~a~~l~~~g~~v~~~d~~~~~ 40 (445)
T PRK04308 18 ISMIAYLRKNGAEVAAYDAELKP 40 (445)
T ss_pred HHHHHHHHHCCCEEEEEeCCCCc
Confidence 46899999999999999976653
No 387
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=52.38 E-value=15 Score=25.56 Aligned_cols=19 Identities=26% Similarity=0.200 Sum_probs=16.7
Q ss_pred hHHHHhhCCCcEEEEeeCC
Q 034688 3 TAVELLDQGHEVDIYELRS 21 (87)
Q Consensus 3 aA~~L~~~G~~V~v~E~~~ 21 (87)
.|+.|++.|.+|+++|..+
T Consensus 22 LA~aL~~~G~~VlaID~dp 40 (243)
T PF06564_consen 22 LAWALARLGESVLAIDLDP 40 (243)
T ss_pred HHHHHHHCCCcEEEEeCCc
Confidence 4788999999999999874
No 388
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=52.12 E-value=3 Score=31.52 Aligned_cols=58 Identities=19% Similarity=0.300 Sum_probs=37.1
Q ss_pred ChhHHHHhh----CCCcEEEEeeCCCcCceEEEEe-ccCCeEEeeeeEEEeCCChHHHHHHHHc
Q 034688 1 MSTAVELLD----QGHEVDIYELRSFIGGKVASFV-CKRGNHIEISLHVFFGCYNNLFRLTKKV 59 (87)
Q Consensus 1 L~aA~~L~~----~G~~V~v~E~~~~~GG~~~s~~-~~~g~~~d~G~~~~~~~~~~~~~l~~~l 59 (87)
|++|..|-+ .|.++.|+|--+..||-.-..- ...|+++--|-. .-+.+++++++++.+
T Consensus 35 LA~AvfLIRDg~m~G~~IHilEelpl~GGSlDG~~~p~~GfV~RGGRe-mEnhfEc~WDlfrsI 97 (587)
T COG4716 35 LAAAVFLIRDGQMDGKRIHILEELPLAGGSLDGAGSPHHGFVVRGGRE-MENHFECLWDLFRSI 97 (587)
T ss_pred hhheeEEEeccccCCceeEeeecCcccCCCCCCCCCcccceeecCcHH-HHHHHHHHHHHHhcC
Confidence 678888865 4679999999999999553211 122555444432 234456677777654
No 389
>PRK06370 mercuric reductase; Validated
Probab=51.89 E-value=15 Score=27.09 Aligned_cols=24 Identities=21% Similarity=0.058 Sum_probs=20.0
Q ss_pred hhHHHHhhCCCcEEEEeeCCCcCc
Q 034688 2 STAVELLDQGHEVDIYELRSFIGG 25 (87)
Q Consensus 2 ~aA~~L~~~G~~V~v~E~~~~~GG 25 (87)
-+|..|++.|.+|+|+|+.+++..
T Consensus 185 E~A~~l~~~G~~Vtli~~~~~~l~ 208 (463)
T PRK06370 185 EFAQMFRRFGSEVTVIERGPRLLP 208 (463)
T ss_pred HHHHHHHHcCCeEEEEEcCCCCCc
Confidence 357788899999999999987654
No 390
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=51.83 E-value=44 Score=19.03 Aligned_cols=36 Identities=28% Similarity=0.219 Sum_probs=19.9
Q ss_pred HHHHhhCCCcEEEEeeCCCcCc-eEEEEeccCCeEEee
Q 034688 4 AVELLDQGHEVDIYELRSFIGG-KVASFVCKRGNHIEI 40 (87)
Q Consensus 4 A~~L~~~G~~V~v~E~~~~~GG-~~~s~~~~~g~~~d~ 40 (87)
..+|+++|.++.- +......| +..-++|++|..+|.
T Consensus 88 ~~~l~~~g~~~~~-~~~~~~~g~~~~~~~DPdG~~iE~ 124 (125)
T cd07241 88 TERLRADGYLIIG-EPRTTGDGYYESVILDPEGNRIEI 124 (125)
T ss_pred HHHHHHCCCEEEe-CceecCCCeEEEEEECCCCCEEEe
Confidence 3456678876552 22222233 333467788888875
No 391
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=51.77 E-value=14 Score=27.21 Aligned_cols=19 Identities=37% Similarity=0.644 Sum_probs=16.1
Q ss_pred CCcEEEEeeCCCcCceEEE
Q 034688 11 GHEVDIYELRSFIGGKVAS 29 (87)
Q Consensus 11 G~~V~v~E~~~~~GG~~~s 29 (87)
|.+|+|+|+.+++|=++..
T Consensus 1 g~~V~ilEkn~~~GkKil~ 19 (376)
T TIGR03862 1 GLEVDVFEAKPSVGRKFLM 19 (376)
T ss_pred CCeEEEEeCCCCccceeEE
Confidence 5789999999999877654
No 392
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=51.55 E-value=45 Score=19.08 Aligned_cols=36 Identities=25% Similarity=0.092 Sum_probs=22.5
Q ss_pred HHHHhhCCCcEEEEee-----CCCcCceEEEEeccCCeEEee
Q 034688 4 AVELLDQGHEVDIYEL-----RSFIGGKVASFVCKRGNHIEI 40 (87)
Q Consensus 4 A~~L~~~G~~V~v~E~-----~~~~GG~~~s~~~~~g~~~d~ 40 (87)
..+|.++|.++.- +- ...-+++...++|.+|..+|.
T Consensus 82 ~~~l~~~g~~~~~-~p~~~~~~~~~~~~~~~~~DPdG~~iE~ 122 (125)
T cd08357 82 AERLEAAGVEFLI-EPYTRFEGQPGEQETFFLKDPSGNALEF 122 (125)
T ss_pred HHHHHHCCCcEec-CcceeccCCcCceeEEEEECCCCCEEEE
Confidence 4466778886542 21 122345767778888988875
No 393
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=51.38 E-value=37 Score=20.29 Aligned_cols=40 Identities=20% Similarity=0.151 Sum_probs=25.5
Q ss_pred HHHHhhCCCcEEEEeeCCCcCc-eEEEEeccCCeEEeeeeE
Q 034688 4 AVELLDQGHEVDIYELRSFIGG-KVASFVCKRGNHIEISLH 43 (87)
Q Consensus 4 A~~L~~~G~~V~v~E~~~~~GG-~~~s~~~~~g~~~d~G~~ 43 (87)
+.+|+++|+++..-..+...++ +...+++++|..+|+...
T Consensus 80 ~~~l~~~G~~~~~~~~~~~~~~~~~~y~~DP~G~~iEl~~~ 120 (134)
T cd08360 80 GNHMLRAGYQTGWGPGRHRIGSNYFWYFRDPWGGEVEYGAD 120 (134)
T ss_pred HHHHHHcCCccccCCCCcCCCccEEEEEECCCCCEEEEEcc
Confidence 4578889998864322223333 334567788999988654
No 394
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=51.24 E-value=16 Score=22.35 Aligned_cols=19 Identities=26% Similarity=0.406 Sum_probs=17.2
Q ss_pred hHHHHhhCCCcEEEEeeCC
Q 034688 3 TAVELLDQGHEVDIYELRS 21 (87)
Q Consensus 3 aA~~L~~~G~~V~v~E~~~ 21 (87)
.|+.|+++|++|+++-+.+
T Consensus 13 ~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 13 YAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp HHHHHHHTTCEEEEEESHH
T ss_pred HHHHHHHCCCceEEEEccc
Confidence 5889999999999998887
No 395
>PRK07846 mycothione reductase; Reviewed
Probab=51.02 E-value=15 Score=27.23 Aligned_cols=23 Identities=13% Similarity=-0.012 Sum_probs=19.2
Q ss_pred hhHHHHhhCCCcEEEEeeCCCcC
Q 034688 2 STAVELLDQGHEVDIYELRSFIG 24 (87)
Q Consensus 2 ~aA~~L~~~G~~V~v~E~~~~~G 24 (87)
-+|..|++.|.+|+|+|+++++.
T Consensus 180 E~A~~l~~~G~~Vtli~~~~~ll 202 (451)
T PRK07846 180 EFAHVFSALGVRVTVVNRSGRLL 202 (451)
T ss_pred HHHHHHHHcCCeEEEEEcCCccc
Confidence 35778889999999999988764
No 396
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=51.01 E-value=16 Score=26.84 Aligned_cols=23 Identities=22% Similarity=0.159 Sum_probs=19.6
Q ss_pred hHHHHhhCCCcEEEEeeCCCcCc
Q 034688 3 TAVELLDQGHEVDIYELRSFIGG 25 (87)
Q Consensus 3 aA~~L~~~G~~V~v~E~~~~~GG 25 (87)
.|..|++.|.+|+|+|+.+++..
T Consensus 184 ~A~~l~~~g~~Vtli~~~~~~l~ 206 (460)
T PRK06292 184 LGQALSRLGVKVTVFERGDRILP 206 (460)
T ss_pred HHHHHHHcCCcEEEEecCCCcCc
Confidence 57778889999999999988764
No 397
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=50.57 E-value=13 Score=27.55 Aligned_cols=21 Identities=19% Similarity=0.320 Sum_probs=18.2
Q ss_pred ChhHHHHhhCCCcEEEEeeCC
Q 034688 1 MSTAVELLDQGHEVDIYELRS 21 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~ 21 (87)
+++|..|.+.|++|++.|+.+
T Consensus 27 ~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 27 IPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred HHHHHHHHHCCCEEEEECCCC
Confidence 368889999999999999765
No 398
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=50.53 E-value=18 Score=26.76 Aligned_cols=22 Identities=18% Similarity=0.003 Sum_probs=18.6
Q ss_pred hHHHHhhCCCcEEEEeeCCCcC
Q 034688 3 TAVELLDQGHEVDIYELRSFIG 24 (87)
Q Consensus 3 aA~~L~~~G~~V~v~E~~~~~G 24 (87)
.|..|++.|.+|+|+|+.+++.
T Consensus 181 ~A~~l~~~g~~Vtli~~~~~il 202 (450)
T TIGR01421 181 LAGVLHGLGSETHLVIRHERVL 202 (450)
T ss_pred HHHHHHHcCCcEEEEecCCCCC
Confidence 5778888999999999998764
No 399
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=50.48 E-value=18 Score=26.93 Aligned_cols=23 Identities=22% Similarity=0.182 Sum_probs=19.1
Q ss_pred hHHHHhhCCCcEEEEeeCCCcCc
Q 034688 3 TAVELLDQGHEVDIYELRSFIGG 25 (87)
Q Consensus 3 aA~~L~~~G~~V~v~E~~~~~GG 25 (87)
.|..|++.|.+|+|+|+.+++..
T Consensus 189 ~A~~l~~~G~~Vtlv~~~~~il~ 211 (471)
T PRK06467 189 MGTVYHRLGSEVDVVEMFDQVIP 211 (471)
T ss_pred HHHHHHHcCCCEEEEecCCCCCC
Confidence 57778889999999999987643
No 400
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=50.47 E-value=19 Score=23.65 Aligned_cols=23 Identities=13% Similarity=0.014 Sum_probs=18.7
Q ss_pred hHHHHhh-CCCcEEEEeeCCCcCc
Q 034688 3 TAVELLD-QGHEVDIYELRSFIGG 25 (87)
Q Consensus 3 aA~~L~~-~G~~V~v~E~~~~~GG 25 (87)
.|+.|++ .|++|.++|...+-+.
T Consensus 56 LA~~la~~~g~~VLlvD~D~~~~~ 79 (207)
T TIGR03018 56 LAISLAQEYDKTVLLIDADLRRPS 79 (207)
T ss_pred HHHHHHHhcCCeEEEEECCCCChh
Confidence 4778886 6999999999987654
No 401
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=50.38 E-value=10 Score=29.03 Aligned_cols=21 Identities=10% Similarity=-0.097 Sum_probs=17.6
Q ss_pred HhhCCCcEEEEeeCCCcCceE
Q 034688 7 LLDQGHEVDIYELRSFIGGKV 27 (87)
Q Consensus 7 L~~~G~~V~v~E~~~~~GG~~ 27 (87)
|+++|.+|+|+||....||.+
T Consensus 1 ~a~~G~~VilveK~~~~~g~t 21 (565)
T TIGR01816 1 LAKGGVNTACVTKLFPTRSHT 21 (565)
T ss_pred CCCCCCceEEEEcCCCCCccH
Confidence 567899999999999888733
No 402
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=50.32 E-value=16 Score=26.55 Aligned_cols=20 Identities=20% Similarity=0.373 Sum_probs=16.4
Q ss_pred hHHHHhhCCCcEEEEeeCCC
Q 034688 3 TAVELLDQGHEVDIYELRSF 22 (87)
Q Consensus 3 aA~~L~~~G~~V~v~E~~~~ 22 (87)
-|..|-++||+|+||++...
T Consensus 50 M~~nLik~G~kVtV~dr~~~ 69 (327)
T KOG0409|consen 50 MVSNLIKAGYKVTVYDRTKD 69 (327)
T ss_pred HHHHHHHcCCEEEEEeCcHH
Confidence 36688899999999996654
No 403
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=50.28 E-value=16 Score=27.17 Aligned_cols=22 Identities=18% Similarity=0.080 Sum_probs=18.3
Q ss_pred hHHHHhhCCCcEEEEeeCCCcC
Q 034688 3 TAVELLDQGHEVDIYELRSFIG 24 (87)
Q Consensus 3 aA~~L~~~G~~V~v~E~~~~~G 24 (87)
.|..|++.|.+|+|+|+.+++.
T Consensus 189 ~A~~l~~~G~~Vtlie~~~~il 210 (466)
T PRK06115 189 LGSVWRRLGAQVTVVEYLDRIC 210 (466)
T ss_pred HHHHHHHcCCeEEEEeCCCCCC
Confidence 5677888999999999888764
No 404
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=50.24 E-value=48 Score=18.98 Aligned_cols=35 Identities=17% Similarity=0.096 Sum_probs=21.7
Q ss_pred HHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEee
Q 034688 4 AVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEI 40 (87)
Q Consensus 4 A~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~ 40 (87)
..+|.++|.++.- + ....+++...+++++|..+|+
T Consensus 72 ~~~l~~~Gi~~~~-~-~~~~~~~~~~~~DP~Gn~iel 106 (112)
T cd08344 72 ARHLEAAGVALAA-A-PPGADPDGVWFRDPDGNLLQV 106 (112)
T ss_pred HHHHHHcCCceec-C-CCcCCCCEEEEECCCCCEEEE
Confidence 3456778887542 2 233445555667788888876
No 405
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=49.63 E-value=11 Score=27.74 Aligned_cols=22 Identities=14% Similarity=0.187 Sum_probs=18.1
Q ss_pred ChhHHHHhhCCCcEEEEeeCCC
Q 034688 1 MSTAVELLDQGHEVDIYELRSF 22 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~ 22 (87)
++.|..|+++|++|++++..+.
T Consensus 16 ~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 16 LPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred HHHHHHHHhCCCEEEEEeCCHH
Confidence 3578899999999999987554
No 406
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=49.49 E-value=9.3 Score=25.94 Aligned_cols=19 Identities=11% Similarity=-0.029 Sum_probs=16.0
Q ss_pred hHHHHhhCCCcEEEEeeCCC
Q 034688 3 TAVELLDQGHEVDIYELRSF 22 (87)
Q Consensus 3 aA~~L~~~G~~V~v~E~~~~ 22 (87)
.|+.|++.| +|.|+|..++
T Consensus 22 LA~~La~~G-rVLliD~Dpq 40 (264)
T PRK13231 22 MAAAYSNDH-RVLVIGCDPK 40 (264)
T ss_pred HhcccCCCC-EEEEEeEccC
Confidence 367788899 9999999877
No 407
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=49.44 E-value=16 Score=26.99 Aligned_cols=23 Identities=26% Similarity=0.131 Sum_probs=18.6
Q ss_pred hhHHHHhhCCCcEEEEeeCCCcC
Q 034688 2 STAVELLDQGHEVDIYELRSFIG 24 (87)
Q Consensus 2 ~aA~~L~~~G~~V~v~E~~~~~G 24 (87)
-+|..|++.|.+|+|+|+.+++-
T Consensus 186 E~A~~l~~~G~~Vtlv~~~~~~l 208 (466)
T PRK07818 186 EFAYVLKNYGVDVTIVEFLDRAL 208 (466)
T ss_pred HHHHHHHHcCCeEEEEecCCCcC
Confidence 35778888999999999887654
No 408
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=49.31 E-value=13 Score=27.28 Aligned_cols=22 Identities=9% Similarity=0.025 Sum_probs=17.8
Q ss_pred ChhHHHHhhCCCcEEEEeeCCC
Q 034688 1 MSTAVELLDQGHEVDIYELRSF 22 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~ 22 (87)
|+||..|.+.+++|+|+|+++.
T Consensus 23 l~~a~~L~~~~~~ItlI~~~~~ 44 (424)
T PTZ00318 23 AYFVRNLDPKKYNITVISPRNH 44 (424)
T ss_pred HHHHHHhCcCCCeEEEEcCCCC
Confidence 4578888777899999998775
No 409
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=49.26 E-value=16 Score=26.74 Aligned_cols=23 Identities=17% Similarity=0.109 Sum_probs=19.0
Q ss_pred hHHHHhhCCCcEEEEeeCCCcCc
Q 034688 3 TAVELLDQGHEVDIYELRSFIGG 25 (87)
Q Consensus 3 aA~~L~~~G~~V~v~E~~~~~GG 25 (87)
+|..|++.|.+|+|+|+++++..
T Consensus 190 ~A~~l~~~g~~Vtli~~~~~~l~ 212 (461)
T PRK05249 190 YASIFAALGVKVTLINTRDRLLS 212 (461)
T ss_pred HHHHHHHcCCeEEEEecCCCcCC
Confidence 57778889999999999887643
No 410
>PF07075 DUF1343: Protein of unknown function (DUF1343); InterPro: IPR008302 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=49.17 E-value=19 Score=26.46 Aligned_cols=37 Identities=22% Similarity=0.490 Sum_probs=29.4
Q ss_pred hhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCC
Q 034688 8 LDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCY 49 (87)
Q Consensus 8 ~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~ 49 (87)
+++|.+|.|+||=+=+||.. -+|.+.|.+...|.+.+
T Consensus 108 a~~g~~vvVLDRPNPl~G~~-----veGp~l~~~~~SFvG~~ 144 (365)
T PF07075_consen 108 AENGKPVVVLDRPNPLGGRY-----VEGPILDPEFRSFVGMY 144 (365)
T ss_pred HHhCCeEEEEeCCCCCCCCc-----cccCCcCcccccccCCC
Confidence 56899999999999989944 35788888877776654
No 411
>PF00857 Isochorismatase: Isochorismatase family; InterPro: IPR000868 This is a family of hydrolase enzymes. Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate (3.3.2.1 from EC).; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1XN4_A 3KL2_F 1YZV_A 3IRV_A 1IM5_A 1ILW_A 3PL1_A 1NF9_A 1NF8_A 1X9G_A ....
Probab=48.86 E-value=14 Score=23.14 Aligned_cols=18 Identities=33% Similarity=0.492 Sum_probs=14.6
Q ss_pred ChhHHHHhhCCCcEEEEe
Q 034688 1 MSTAVELLDQGHEVDIYE 18 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E 18 (87)
+++|..+.++|++|+|++
T Consensus 127 ~~Ta~~a~~~g~~v~v~~ 144 (174)
T PF00857_consen 127 LATARDAFDRGYRVIVVE 144 (174)
T ss_dssp HHHHHHHHHTT-EEEEEE
T ss_pred ehhHHHHHHCCCEEEEEC
Confidence 367888899999999998
No 412
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=48.78 E-value=15 Score=26.88 Aligned_cols=21 Identities=19% Similarity=0.218 Sum_probs=18.2
Q ss_pred ChhHHHHhhCCCcEEEEeeCC
Q 034688 1 MSTAVELLDQGHEVDIYELRS 21 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~ 21 (87)
+++|..|+++|++|.+.|+..
T Consensus 18 ~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 18 YAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred HHHHHHHHHCCCEEEEEcCCC
Confidence 478999999999999998654
No 413
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=48.73 E-value=14 Score=27.27 Aligned_cols=20 Identities=30% Similarity=0.265 Sum_probs=17.5
Q ss_pred hHHHHhhCCCcEEEEeeCCC
Q 034688 3 TAVELLDQGHEVDIYELRSF 22 (87)
Q Consensus 3 aA~~L~~~G~~V~v~E~~~~ 22 (87)
+|..|.++|++|++.|..+.
T Consensus 23 ~a~~L~~~G~~V~~~D~~~~ 42 (461)
T PRK00421 23 LAEVLLNLGYKVSGSDLKES 42 (461)
T ss_pred HHHHHHhCCCeEEEECCCCC
Confidence 59999999999999997654
No 414
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=48.64 E-value=17 Score=27.06 Aligned_cols=23 Identities=22% Similarity=0.052 Sum_probs=18.8
Q ss_pred hhHHHHhhCCCcEEEEeeCCCcC
Q 034688 2 STAVELLDQGHEVDIYELRSFIG 24 (87)
Q Consensus 2 ~aA~~L~~~G~~V~v~E~~~~~G 24 (87)
.+|..|++.|.+|+|+|+.+++.
T Consensus 197 E~A~~l~~~g~~Vtli~~~~~~l 219 (475)
T PRK06327 197 ELGSVWRRLGAEVTILEALPAFL 219 (475)
T ss_pred HHHHHHHHcCCeEEEEeCCCccC
Confidence 35778888999999999988763
No 415
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=48.62 E-value=18 Score=26.57 Aligned_cols=23 Identities=13% Similarity=0.146 Sum_probs=19.1
Q ss_pred hHHHHhhCCCcEEEEeeCCCcCc
Q 034688 3 TAVELLDQGHEVDIYELRSFIGG 25 (87)
Q Consensus 3 aA~~L~~~G~~V~v~E~~~~~GG 25 (87)
.|..|++.|.+|+|+|+.+++..
T Consensus 163 ~A~~l~~~g~~Vtli~~~~~l~~ 185 (438)
T PRK13512 163 VLENLYERGLHPTLIHRSDKINK 185 (438)
T ss_pred HHHHHHhCCCcEEEEecccccch
Confidence 57778889999999999887654
No 416
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=48.02 E-value=17 Score=21.87 Aligned_cols=18 Identities=22% Similarity=0.449 Sum_probs=15.4
Q ss_pred ChhHHHHhhCCCcEEEEe
Q 034688 1 MSTAVELLDQGHEVDIYE 18 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E 18 (87)
|.||..|+++|+++.|+.
T Consensus 25 l~A~~~L~~~Gi~~~vi~ 42 (124)
T PF02780_consen 25 LEAAEELEEEGIKAGVID 42 (124)
T ss_dssp HHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHcCCceeEEe
Confidence 357888999999999997
No 417
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=47.81 E-value=54 Score=18.89 Aligned_cols=36 Identities=17% Similarity=0.064 Sum_probs=21.9
Q ss_pred HHHhhCCCcEEEEeeCCC-cCceEEEEeccCCeEEeee
Q 034688 5 VELLDQGHEVDIYELRSF-IGGKVASFVCKRGNHIEIS 41 (87)
Q Consensus 5 ~~L~~~G~~V~v~E~~~~-~GG~~~s~~~~~g~~~d~G 41 (87)
.+|.++|.+|.- +-... -|.+...++|++|..+..+
T Consensus 84 ~~l~~~G~~v~~-~~~~~~~g~~~~~~~DPdG~~~~l~ 120 (122)
T cd08355 84 ERARAAGAEILR-EPTDTPYGSREFTARDPEGNLWTFG 120 (122)
T ss_pred HHHHHCCCEEee-CccccCCCcEEEEEECCCCCEEEEe
Confidence 345567765542 22222 4667777888888887763
No 418
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=47.67 E-value=16 Score=25.22 Aligned_cols=20 Identities=15% Similarity=0.081 Sum_probs=16.8
Q ss_pred hhHHHHhhCCCcEEEEeeCC
Q 034688 2 STAVELLDQGHEVDIYELRS 21 (87)
Q Consensus 2 ~aA~~L~~~G~~V~v~E~~~ 21 (87)
+.|..|+++|++|++++.++
T Consensus 18 ~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 18 GIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred HHHHHHHHCCCeEEEEeCCH
Confidence 45788899999999999764
No 419
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=47.48 E-value=50 Score=18.43 Aligned_cols=35 Identities=34% Similarity=0.334 Sum_probs=23.1
Q ss_pred HHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEee
Q 034688 5 VELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEI 40 (87)
Q Consensus 5 ~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~ 40 (87)
.+|.++|..+.- +.....+|+...+++++|..++.
T Consensus 83 ~~l~~~g~~~~~-~~~~~~~~~~~~~~DP~G~~ie~ 117 (119)
T cd07263 83 EELKARGVEFSE-EPREMPYGTVAVFRDPDGNLFVL 117 (119)
T ss_pred HHHHhCCCEEee-ccccCCCceEEEEECCCCCEEEE
Confidence 455667875542 22356678888888888888775
No 420
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=47.47 E-value=17 Score=26.78 Aligned_cols=21 Identities=24% Similarity=0.264 Sum_probs=18.3
Q ss_pred ChhHHHHhhCCCcEEEEeeCC
Q 034688 1 MSTAVELLDQGHEVDIYELRS 21 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~ 21 (87)
+++|..|.+.|++|++.|..+
T Consensus 19 ~s~a~~L~~~G~~v~~~D~~~ 39 (448)
T PRK03803 19 LSVVRFLARQGIPFAVMDSRE 39 (448)
T ss_pred HHHHHHHHhCCCeEEEEeCCC
Confidence 468999999999999999765
No 421
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=47.45 E-value=20 Score=24.09 Aligned_cols=20 Identities=25% Similarity=0.282 Sum_probs=16.8
Q ss_pred hHHHHh-hCCCcEEEEeeCCC
Q 034688 3 TAVELL-DQGHEVDIYELRSF 22 (87)
Q Consensus 3 aA~~L~-~~G~~V~v~E~~~~ 22 (87)
.|+.|+ ..|++|.++|..++
T Consensus 23 La~~La~~~~~kVLliDlDpQ 43 (259)
T COG1192 23 LAAALAKRGGKKVLLIDLDPQ 43 (259)
T ss_pred HHHHHHHhcCCcEEEEeCCCc
Confidence 467788 56699999999998
No 422
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=47.41 E-value=27 Score=20.47 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=18.5
Q ss_pred hHHHHhhC-CCcEEEEeeCCCcCc
Q 034688 3 TAVELLDQ-GHEVDIYELRSFIGG 25 (87)
Q Consensus 3 aA~~L~~~-G~~V~v~E~~~~~GG 25 (87)
-|..+++. |++|.++|..++.+.
T Consensus 20 la~~~~~~~~~~~~l~d~d~~~~~ 43 (106)
T cd03111 20 LAVALAKEAGRRVLLVDLDLQFGD 43 (106)
T ss_pred HHHHHHhcCCCcEEEEECCCCCCC
Confidence 35666777 999999999998765
No 423
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=47.34 E-value=46 Score=19.25 Aligned_cols=38 Identities=18% Similarity=0.148 Sum_probs=24.8
Q ss_pred HHHhhCCCcEE------EEeeCCC-cCceEEEEeccCCeEEeeee
Q 034688 5 VELLDQGHEVD------IYELRSF-IGGKVASFVCKRGNHIEISL 42 (87)
Q Consensus 5 ~~L~~~G~~V~------v~E~~~~-~GG~~~s~~~~~g~~~d~G~ 42 (87)
.+|.++|..+. +.+-... -|++...+++++|+.++.+.
T Consensus 74 ~~l~~~G~~~~~~~~~~~~~~~~~~~g~~~~~~~DPdG~~ie~~~ 118 (120)
T cd08350 74 AEFRAAGLPETGSGIPRITPPEDQPWGMREFALVDPDGNLLRFGQ 118 (120)
T ss_pred HHHHHhCccccccCCCcccCCcCCCCceeEEEEECCCCCEEEeec
Confidence 45667787643 3333322 56777788889999988753
No 424
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=47.32 E-value=29 Score=21.95 Aligned_cols=26 Identities=23% Similarity=0.279 Sum_probs=20.6
Q ss_pred hHHHHhhCCC-----cEEEEeeCCCcCceEE
Q 034688 3 TAVELLDQGH-----EVDIYELRSFIGGKVA 28 (87)
Q Consensus 3 aA~~L~~~G~-----~V~v~E~~~~~GG~~~ 28 (87)
|+..|.++|+ +|.-.|..+.+||..+
T Consensus 55 A~~~Lee~gF~Vr~~dVlaVEmeD~PG~l~~ 85 (142)
T COG4747 55 AHSVLEEAGFTVRETDVLAVEMEDVPGGLSR 85 (142)
T ss_pred HHHHHHHCCcEEEeeeEEEEEecCCCCcHHH
Confidence 5567888897 6677899999999653
No 425
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=46.78 E-value=15 Score=22.11 Aligned_cols=15 Identities=40% Similarity=0.567 Sum_probs=12.2
Q ss_pred hHHHHhhCCCcEEEE
Q 034688 3 TAVELLDQGHEVDIY 17 (87)
Q Consensus 3 aA~~L~~~G~~V~v~ 17 (87)
.|..|+++|++|+|+
T Consensus 21 l~~~l~~~G~~v~v~ 35 (177)
T PF13439_consen 21 LARALAKRGHEVTVV 35 (177)
T ss_dssp HHHHHHHTT-EEEEE
T ss_pred HHHHHHHCCCEEEEE
Confidence 467888999999999
No 426
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=46.77 E-value=16 Score=27.31 Aligned_cols=21 Identities=14% Similarity=0.200 Sum_probs=18.3
Q ss_pred ChhHHHHhhCCCcEEEEeeCC
Q 034688 1 MSTAVELLDQGHEVDIYELRS 21 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~ 21 (87)
+++|..|.++|++|++.|...
T Consensus 20 ~s~a~~L~~~G~~v~~~D~~~ 40 (498)
T PRK02006 20 LAMARWCARHGARLRVADTRE 40 (498)
T ss_pred HHHHHHHHHCCCEEEEEcCCC
Confidence 468999999999999999765
No 427
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=46.68 E-value=16 Score=26.94 Aligned_cols=20 Identities=25% Similarity=0.243 Sum_probs=17.4
Q ss_pred hHHHHhhCCCcEEEEeeCCC
Q 034688 3 TAVELLDQGHEVDIYELRSF 22 (87)
Q Consensus 3 aA~~L~~~G~~V~v~E~~~~ 22 (87)
+|..|+++|++|++.|....
T Consensus 15 la~~L~~~G~~v~~~D~~~~ 34 (448)
T TIGR01082 15 IAEILLNRGYQVSGSDIAEN 34 (448)
T ss_pred HHHHHHHCCCeEEEECCCcc
Confidence 79999999999999997553
No 428
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=46.56 E-value=14 Score=27.08 Aligned_cols=21 Identities=33% Similarity=0.322 Sum_probs=18.0
Q ss_pred hhHHHHhhCCCcEEEEeeCCC
Q 034688 2 STAVELLDQGHEVDIYELRSF 22 (87)
Q Consensus 2 ~aA~~L~~~G~~V~v~E~~~~ 22 (87)
..|..|+++|++|+++++.+.
T Consensus 14 ~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 14 PLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred HHHHHHHhcCCeEEEEECCHH
Confidence 568889999999999998754
No 429
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=46.54 E-value=19 Score=24.96 Aligned_cols=20 Identities=25% Similarity=0.471 Sum_probs=16.7
Q ss_pred hhHHHHhhCCCcEEEEeeCC
Q 034688 2 STAVELLDQGHEVDIYELRS 21 (87)
Q Consensus 2 ~aA~~L~~~G~~V~v~E~~~ 21 (87)
+.|..|+++|++|+++|.++
T Consensus 17 ~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 17 QIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred HHHHHHHhcCCeEEEEeCCH
Confidence 45778889999999998764
No 430
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=46.49 E-value=19 Score=26.56 Aligned_cols=24 Identities=21% Similarity=0.098 Sum_probs=19.2
Q ss_pred hhHHHHhhCCCcEEEEeeCCCcCc
Q 034688 2 STAVELLDQGHEVDIYELRSFIGG 25 (87)
Q Consensus 2 ~aA~~L~~~G~~V~v~E~~~~~GG 25 (87)
.+|..|++.|.+|+|+|+.+++..
T Consensus 184 E~A~~l~~~g~~Vtli~~~~~ll~ 207 (458)
T PRK06912 184 EFASIYSRLGTKVTIVEMAPQLLP 207 (458)
T ss_pred HHHHHHHHcCCeEEEEecCCCcCc
Confidence 356778889999999999887643
No 431
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=46.46 E-value=66 Score=19.90 Aligned_cols=39 Identities=18% Similarity=0.116 Sum_probs=23.2
Q ss_pred HHHHhhCCCcEEEEeeCCCc-CceEE-EEeccCCeEEeeeeE
Q 034688 4 AVELLDQGHEVDIYELRSFI-GGKVA-SFVCKRGNHIEISLH 43 (87)
Q Consensus 4 A~~L~~~G~~V~v~E~~~~~-GG~~~-s~~~~~g~~~d~G~~ 43 (87)
+-+|+++|+++.. +-..+. |.... -+++.+|..+|+...
T Consensus 85 ~~~L~~~Gv~v~~-~~g~~~~g~~~~~y~~DPdG~~iEl~~~ 125 (153)
T cd07257 85 HDYLREKGYEHVW-GVGRHILGSQIFDYWFDPWGFIVEHYTD 125 (153)
T ss_pred HHHHHHCCCcEee-cCCccCCCCCEEEEEECCCCCEEEEEcC
Confidence 4688899998763 212222 33322 346778999888654
No 432
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=46.39 E-value=16 Score=27.70 Aligned_cols=18 Identities=22% Similarity=0.396 Sum_probs=15.1
Q ss_pred hHHHHhhCCCcEEEEeeC
Q 034688 3 TAVELLDQGHEVDIYELR 20 (87)
Q Consensus 3 aA~~L~~~G~~V~v~E~~ 20 (87)
-|.+|+++||+|||+.-.
T Consensus 41 l~~~La~rGH~VTvi~p~ 58 (507)
T PHA03392 41 YVEALAERGHNVTVIKPT 58 (507)
T ss_pred HHHHHHHcCCeEEEEecc
Confidence 477899999999999554
No 433
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=46.33 E-value=15 Score=26.07 Aligned_cols=20 Identities=30% Similarity=0.325 Sum_probs=16.0
Q ss_pred ChhHHHHhhCCCcEEEEeeC
Q 034688 1 MSTAVELLDQGHEVDIYELR 20 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~ 20 (87)
|..|.+|+++||+|+++=..
T Consensus 18 l~la~~L~~rGh~V~~~t~~ 37 (401)
T cd03784 18 VALAWALRAAGHEVRVATPP 37 (401)
T ss_pred HHHHHHHHHCCCeEEEeeCH
Confidence 35688999999999998443
No 434
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=46.30 E-value=15 Score=27.25 Aligned_cols=27 Identities=19% Similarity=0.163 Sum_probs=22.0
Q ss_pred ChhHHHHhhC--CCcEEEEeeCCCcCceE
Q 034688 1 MSTAVELLDQ--GHEVDIYELRSFIGGKV 27 (87)
Q Consensus 1 L~aA~~L~~~--G~~V~v~E~~~~~GG~~ 27 (87)
|+.|++|.-+ +.+|.|+|++..++=.-
T Consensus 61 lAsARel~lrhp~l~V~vleke~~la~hq 89 (453)
T KOG2665|consen 61 LASARELSLRHPSLKVAVLEKEKSLAVHQ 89 (453)
T ss_pred hhhhHHHhhcCCCceEEeeehhhhhceee
Confidence 5788888766 89999999999887433
No 435
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=46.27 E-value=16 Score=26.01 Aligned_cols=17 Identities=29% Similarity=0.501 Sum_probs=14.5
Q ss_pred ChhHHHHhhCCCcEEEE
Q 034688 1 MSTAVELLDQGHEVDIY 17 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~ 17 (87)
|..|..|+++|++|+++
T Consensus 13 l~lA~~L~~~Gh~V~~~ 29 (392)
T TIGR01426 13 LGVVEELVARGHRVTYA 29 (392)
T ss_pred HHHHHHHHhCCCeEEEE
Confidence 35688999999999998
No 436
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=45.34 E-value=25 Score=24.47 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=17.7
Q ss_pred hhHHHHhhCCCcEEEEeeCCC
Q 034688 2 STAVELLDQGHEVDIYELRSF 22 (87)
Q Consensus 2 ~aA~~L~~~G~~V~v~E~~~~ 22 (87)
+.|..++++|++|.|++..++
T Consensus 4 a~a~~~a~~g~~vllv~~Dp~ 24 (284)
T TIGR00345 4 ATAIRLAEQGKKVLLVSTDPA 24 (284)
T ss_pred HHHHHHHHCCCeEEEEECCCC
Confidence 457778899999999998766
No 437
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=44.93 E-value=25 Score=26.08 Aligned_cols=24 Identities=17% Similarity=0.086 Sum_probs=19.6
Q ss_pred hHHHHhhCCCcEEEEeeCCCcCce
Q 034688 3 TAVELLDQGHEVDIYELRSFIGGK 26 (87)
Q Consensus 3 aA~~L~~~G~~V~v~E~~~~~GG~ 26 (87)
+|..|++.|.+|+++|+.+++...
T Consensus 192 ~A~~l~~~g~~Vtli~~~~~~l~~ 215 (466)
T PRK07845 192 FASAYTELGVKVTLVSSRDRVLPG 215 (466)
T ss_pred HHHHHHHcCCeEEEEEcCCcCCCC
Confidence 577888899999999998876543
No 438
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=44.83 E-value=19 Score=26.22 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=18.5
Q ss_pred ChhHHHHhhCCCcEEEEeeCCC
Q 034688 1 MSTAVELLDQGHEVDIYELRSF 22 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~ 22 (87)
+++|..|.++|++|++.|..+.
T Consensus 12 ~a~a~~l~~~G~~V~~sD~~~~ 33 (433)
T TIGR01087 12 RAVARFLHKKGAEVTVTDLKPN 33 (433)
T ss_pred HHHHHHHHHCCCEEEEEeCCCC
Confidence 3689999999999999997543
No 439
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=44.26 E-value=25 Score=24.61 Aligned_cols=21 Identities=29% Similarity=0.265 Sum_probs=17.5
Q ss_pred hhHHHHhhCCCcEEEEeeCCC
Q 034688 2 STAVELLDQGHEVDIYELRSF 22 (87)
Q Consensus 2 ~aA~~L~~~G~~V~v~E~~~~ 22 (87)
+.|..|+++|++|+++.++..
T Consensus 18 ~lA~~l~~~G~~V~~~~r~~~ 38 (308)
T PRK14619 18 TLAGLASANGHRVRVWSRRSG 38 (308)
T ss_pred HHHHHHHHCCCEEEEEeCCCC
Confidence 457888999999999998753
No 440
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=44.07 E-value=22 Score=26.35 Aligned_cols=24 Identities=17% Similarity=0.025 Sum_probs=19.3
Q ss_pred hhHHHHhhCCCcEEEEeeCCCcCc
Q 034688 2 STAVELLDQGHEVDIYELRSFIGG 25 (87)
Q Consensus 2 ~aA~~L~~~G~~V~v~E~~~~~GG 25 (87)
-.|..|++.|.+|+|+|+.+++..
T Consensus 183 E~A~~l~~~G~~Vtli~~~~~ll~ 206 (452)
T TIGR03452 183 EFAHVFSALGTRVTIVNRSTKLLR 206 (452)
T ss_pred HHHHHHHhCCCcEEEEEccCcccc
Confidence 357788889999999999887643
No 441
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=43.98 E-value=20 Score=25.80 Aligned_cols=19 Identities=16% Similarity=0.216 Sum_probs=15.6
Q ss_pred hHHHHhhCCCcEEEEeeCC
Q 034688 3 TAVELLDQGHEVDIYELRS 21 (87)
Q Consensus 3 aA~~L~~~G~~V~v~E~~~ 21 (87)
-|..++.+|++|+++|..+
T Consensus 22 iA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 22 WVARALAHGLDVVAWDPAP 40 (321)
T ss_pred HHHHHHhCCCeEEEEeCCH
Confidence 3667789999999998764
No 442
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=43.78 E-value=22 Score=25.83 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=18.5
Q ss_pred hhHHHHhhCCCcEEEEeeCCCc
Q 034688 2 STAVELLDQGHEVDIYELRSFI 23 (87)
Q Consensus 2 ~aA~~L~~~G~~V~v~E~~~~~ 23 (87)
.+|..|++.|.+|+++++.+++
T Consensus 151 e~A~~l~~~g~~Vtli~~~~~~ 172 (427)
T TIGR03385 151 EMAEALRERGKNVTLIHRSERI 172 (427)
T ss_pred HHHHHHHhCCCcEEEEECCccc
Confidence 3577888899999999988876
No 443
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=43.74 E-value=22 Score=25.70 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=17.5
Q ss_pred hhHHHHhhCCCcEEEEeeCCC
Q 034688 2 STAVELLDQGHEVDIYELRSF 22 (87)
Q Consensus 2 ~aA~~L~~~G~~V~v~E~~~~ 22 (87)
..|..|+++|++|+++++++.
T Consensus 34 ~MA~~La~aG~~V~v~Dr~~~ 54 (342)
T PRK12557 34 RMAIEFAEAGHDVVLAEPNRS 54 (342)
T ss_pred HHHHHHHhCCCeEEEEECCHH
Confidence 457889999999999998653
No 444
>KOG2585 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.26 E-value=18 Score=27.39 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=17.0
Q ss_pred ChhHHHHhhCCC-cEEEEeeCCCc
Q 034688 1 MSTAVELLDQGH-EVDIYELRSFI 23 (87)
Q Consensus 1 L~aA~~L~~~G~-~V~v~E~~~~~ 23 (87)
+.||++|+..|| .|+.|++.+..
T Consensus 283 ~v~gRHL~~~G~~~vi~~pk~s~~ 306 (453)
T KOG2585|consen 283 LVCGRHLAQHGYTPVIYYPKRSLN 306 (453)
T ss_pred HHHHHHHHHcCceeEEEeecCccc
Confidence 469999999997 55555775554
No 445
>PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases. Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B.
Probab=43.13 E-value=19 Score=25.70 Aligned_cols=54 Identities=15% Similarity=0.105 Sum_probs=23.5
Q ss_pred hHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCC
Q 034688 3 TAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADE 63 (87)
Q Consensus 3 aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~ 63 (87)
.|++|+.+|+.|.=|+.-+++|=..-+.. .+.++.|-+.+ ..+++++++.|...
T Consensus 49 LA~YL~~NGFhViRyDsl~HvGlSsG~I~---eftms~g~~sL----~~V~dwl~~~g~~~ 102 (294)
T PF02273_consen 49 LAEYLSANGFHVIRYDSLNHVGLSSGDIN---EFTMSIGKASL----LTVIDWLATRGIRR 102 (294)
T ss_dssp HHHHHHTTT--EEEE---B----------------HHHHHHHH----HHHHHHHHHTT---
T ss_pred HHHHHhhCCeEEEeccccccccCCCCChh---hcchHHhHHHH----HHHHHHHHhcCCCc
Confidence 58999999999999999999996443321 23344433322 34677777777764
No 446
>cd01014 nicotinamidase_related Nicotinamidase_ related amidohydrolases. Cysteine hydrolases of unknown function that share the catalytic triad with other amidohydrolases, like nicotinamidase, which converts nicotinamide to nicotinic acid and ammonia.
Probab=43.10 E-value=20 Score=22.44 Aligned_cols=17 Identities=24% Similarity=0.368 Sum_probs=15.0
Q ss_pred hhHHHHhhCCCcEEEEe
Q 034688 2 STAVELLDQGHEVDIYE 18 (87)
Q Consensus 2 ~aA~~L~~~G~~V~v~E 18 (87)
++|..+.++|++|+|++
T Consensus 115 ~Ta~~a~~~g~~v~vi~ 131 (155)
T cd01014 115 TTVRSAFDLGYDVTVVA 131 (155)
T ss_pred HHHHHHHHCCCcEEEec
Confidence 57888899999999986
No 447
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=42.97 E-value=24 Score=25.11 Aligned_cols=20 Identities=20% Similarity=0.419 Sum_probs=16.8
Q ss_pred hHHHHhhCCCcEEEEeeCCC
Q 034688 3 TAVELLDQGHEVDIYELRSF 22 (87)
Q Consensus 3 aA~~L~~~G~~V~v~E~~~~ 22 (87)
-|..++.+|++|+++|.++.
T Consensus 5 iA~~~a~~G~~V~l~d~~~~ 24 (314)
T PRK08269 5 IALAFAFAGHDVTLIDFKPR 24 (314)
T ss_pred HHHHHHhCCCeEEEEeCCcc
Confidence 46678899999999998873
No 448
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=42.65 E-value=40 Score=23.95 Aligned_cols=32 Identities=13% Similarity=0.061 Sum_probs=25.3
Q ss_pred hhHHHHhhCCCcEEEEee----CCCcCceEEEEecc
Q 034688 2 STAVELLDQGHEVDIYEL----RSFIGGKVASFVCK 33 (87)
Q Consensus 2 ~aA~~L~~~G~~V~v~E~----~~~~GG~~~s~~~~ 33 (87)
+||.+++++..+-++||. ...+||...|..+-
T Consensus 22 tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~v 57 (322)
T KOG0404|consen 22 TAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDV 57 (322)
T ss_pred HHHHHHhhcccCceEEeeeeccCcCCCceeeeeecc
Confidence 588999999999999995 23468988887653
No 449
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=42.63 E-value=27 Score=23.79 Aligned_cols=20 Identities=10% Similarity=0.074 Sum_probs=16.5
Q ss_pred hHHHHhhCCCcEEEEeeCCC
Q 034688 3 TAVELLDQGHEVDIYELRSF 22 (87)
Q Consensus 3 aA~~L~~~G~~V~v~E~~~~ 22 (87)
.|..|++.|.+|.++|...+
T Consensus 124 LA~~la~~g~~VllID~D~~ 143 (274)
T TIGR03029 124 LAIVFSQLGEKTLLIDANLR 143 (274)
T ss_pred HHHHHHhcCCeEEEEeCCCC
Confidence 46778889999999998654
No 450
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=42.29 E-value=25 Score=24.69 Aligned_cols=19 Identities=16% Similarity=0.020 Sum_probs=14.0
Q ss_pred HHhhCCCcEEEEeeCCCcC
Q 034688 6 ELLDQGHEVDIYELRSFIG 24 (87)
Q Consensus 6 ~L~~~G~~V~v~E~~~~~G 24 (87)
.+++.|++|+++|+.+.++
T Consensus 24 l~~~~~~~VLvVDaDpd~n 42 (255)
T COG3640 24 LLSKGGYNVLVVDADPDSN 42 (255)
T ss_pred HHhcCCceEEEEeCCCCCC
Confidence 3344569999999988654
No 451
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=42.02 E-value=20 Score=27.11 Aligned_cols=20 Identities=20% Similarity=0.341 Sum_probs=17.2
Q ss_pred hHHHHhhCCCcEEEEeeCCC
Q 034688 3 TAVELLDQGHEVDIYELRSF 22 (87)
Q Consensus 3 aA~~L~~~G~~V~v~E~~~~ 22 (87)
-|..|+++|++|.||++.+.
T Consensus 5 mA~nL~~~G~~V~v~nrt~~ 24 (459)
T PRK09287 5 LALNIASHGYTVAVYNRTPE 24 (459)
T ss_pred HHHHHHhCCCeEEEECCCHH
Confidence 57889999999999988654
No 452
>PRK04148 hypothetical protein; Provisional
Probab=42.02 E-value=28 Score=22.03 Aligned_cols=21 Identities=19% Similarity=0.330 Sum_probs=18.1
Q ss_pred hhHHHHhhCCCcEEEEeeCCC
Q 034688 2 STAVELLDQGHEVDIYELRSF 22 (87)
Q Consensus 2 ~aA~~L~~~G~~V~v~E~~~~ 22 (87)
+.|..|++.|++|+.+|-++.
T Consensus 30 ~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 30 KVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred HHHHHHHHCCCEEEEEECCHH
Confidence 357789999999999998777
No 453
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=41.99 E-value=19 Score=27.38 Aligned_cols=20 Identities=30% Similarity=0.468 Sum_probs=16.6
Q ss_pred hHHHHhhCCCcEEEEeeCCC
Q 034688 3 TAVELLDQGHEVDIYELRSF 22 (87)
Q Consensus 3 aA~~L~~~G~~V~v~E~~~~ 22 (87)
-|..|+++|++|+++|+++.
T Consensus 20 IA~~la~aG~~V~l~d~~~e 39 (503)
T TIGR02279 20 IAQVAASAGHQVLLYDIRAE 39 (503)
T ss_pred HHHHHHhCCCeEEEEeCCHH
Confidence 47788999999999997744
No 454
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=41.89 E-value=27 Score=26.28 Aligned_cols=31 Identities=32% Similarity=0.383 Sum_probs=23.6
Q ss_pred ChhHHHHhh----CCCcEEEEeeCCC---------cCceEEEEe
Q 034688 1 MSTAVELLD----QGHEVDIYELRSF---------IGGKVASFV 31 (87)
Q Consensus 1 L~aA~~L~~----~G~~V~v~E~~~~---------~GG~~~s~~ 31 (87)
.|.|++|.+ .|++|.|+|+.+. +||-|+.+.
T Consensus 99 sS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~QQFS 142 (509)
T KOG2853|consen 99 SSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGICQQFS 142 (509)
T ss_pred hhhHHHHHHHhhcCCceEEEEeccCcccccceeeeecceeeecc
Confidence 478999965 4799999999874 577776654
No 455
>cd00862 ProRS_anticodon_zinc ProRS Prolyl-anticodon binding domain, long version found predominantly in eukaryotes and archaea. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only, and an additional C-terminal zinc-binding domain specific to this subfamily of aaRSs.
Probab=41.80 E-value=13 Score=24.79 Aligned_cols=40 Identities=25% Similarity=0.188 Sum_probs=28.0
Q ss_pred HHHHhhCCCcEEEEeeCC-CcCceEEEEeccC-CeEEeeeeE
Q 034688 4 AVELLDQGHEVDIYELRS-FIGGKVASFVCKR-GNHIEISLH 43 (87)
Q Consensus 4 A~~L~~~G~~V~v~E~~~-~~GG~~~s~~~~~-g~~~d~G~~ 43 (87)
+..|.++|++|.+-.+.. .+|=+.+.+...+ .+.+..|+.
T Consensus 36 ~~~Lr~~Girv~~D~r~~~s~g~K~~~ae~~GvP~~I~IG~~ 77 (202)
T cd00862 36 AERLKAAGIRVHVDDRDNYTPGWKFNDWELKGVPLRIEIGPR 77 (202)
T ss_pred HHHHHHCCCEEEEECCCCCCHhHHHHHHHhCCCCEEEEECcc
Confidence 445777899999988888 8888876654222 355666654
No 456
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=41.47 E-value=66 Score=18.13 Aligned_cols=38 Identities=21% Similarity=0.105 Sum_probs=22.1
Q ss_pred HHHHhhCCCcEEE--Eee-CCCcCceEEEEeccCCeEEeee
Q 034688 4 AVELLDQGHEVDI--YEL-RSFIGGKVASFVCKRGNHIEIS 41 (87)
Q Consensus 4 A~~L~~~G~~V~v--~E~-~~~~GG~~~s~~~~~g~~~d~G 41 (87)
.-.|.++|..+.- .+. ...-+|+...+++++|..+|..
T Consensus 83 ~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~ 123 (125)
T cd07253 83 VAHLEAHGVPIEEGPVPRTGARGPITSVYFRDPDGNLIELS 123 (125)
T ss_pred HHHHHHCCceeecCcccccCCCCCccEEEEECCCCCEEEee
Confidence 3456677875531 111 1123356667788889988863
No 457
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=41.33 E-value=21 Score=28.51 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=19.5
Q ss_pred hhHHHHhhCCCcEEEEeeCCCcC
Q 034688 2 STAVELLDQGHEVDIYELRSFIG 24 (87)
Q Consensus 2 ~aA~~L~~~G~~V~v~E~~~~~G 24 (87)
-+|..|++.|.+|+|+|+.+++-
T Consensus 154 E~A~~L~~~G~~Vtvv~~~~~ll 176 (785)
T TIGR02374 154 EAAVGLQNLGMDVSVIHHAPGLM 176 (785)
T ss_pred HHHHHHHhcCCeEEEEccCCchh
Confidence 46888999999999999888764
No 458
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=41.03 E-value=34 Score=20.99 Aligned_cols=21 Identities=19% Similarity=0.148 Sum_probs=17.3
Q ss_pred hhHHHHhhCCCcEEEEeeCCC
Q 034688 2 STAVELLDQGHEVDIYELRSF 22 (87)
Q Consensus 2 ~aA~~L~~~G~~V~v~E~~~~ 22 (87)
..|..|+++|.+|.+++....
T Consensus 19 ~~a~~~~~~~~~~~~vd~D~~ 39 (139)
T cd02038 19 NLALALAKLGKRVLLLDADLG 39 (139)
T ss_pred HHHHHHHHCCCcEEEEECCCC
Confidence 457788899999999998753
No 459
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=40.88 E-value=60 Score=20.34 Aligned_cols=56 Identities=18% Similarity=0.014 Sum_probs=32.6
Q ss_pred HHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCc
Q 034688 4 AVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADEN 64 (87)
Q Consensus 4 A~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~ 64 (87)
..+|.++|+.+ .+-.++.+++...+++.+|..+|.-.. ....++.+-++++|....
T Consensus 83 ~~~L~~~Gv~~--~~~~~~~~~~s~yf~DPdG~~iEl~~~---~~~~~~~~~~~~~~~~~~ 138 (157)
T cd08347 83 KERLEALGLPV--SGIVDRFYFKSLYFREPGGILFEIATD---GPGFTVDEPLEELGERLK 138 (157)
T ss_pred HHHHHHCCCCc--ccccccccEEEEEEECCCCcEEEEEEC---CCCccccCChhHcCCccC
Confidence 44667788864 233444455555677888999988543 111234445666665543
No 460
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=40.68 E-value=28 Score=23.81 Aligned_cols=19 Identities=26% Similarity=0.399 Sum_probs=16.1
Q ss_pred hhHHHHhhCCCcEEEEeeC
Q 034688 2 STAVELLDQGHEVDIYELR 20 (87)
Q Consensus 2 ~aA~~L~~~G~~V~v~E~~ 20 (87)
..|..|+++|++|+++.++
T Consensus 14 ~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 14 LFGAALAQAGHDVTLVARR 32 (304)
T ss_pred HHHHHHHhCCCeEEEEECC
Confidence 4678899999999999873
No 461
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=40.56 E-value=24 Score=20.70 Aligned_cols=22 Identities=36% Similarity=0.326 Sum_probs=16.4
Q ss_pred hhHHHHhhCCCcEEEEeeCCCc
Q 034688 2 STAVELLDQGHEVDIYELRSFI 23 (87)
Q Consensus 2 ~aA~~L~~~G~~V~v~E~~~~~ 23 (87)
..|..|.++|++|.+++.....
T Consensus 19 ~la~~l~~~G~~v~~~d~~~~~ 40 (121)
T PF02310_consen 19 YLAAYLRKAGHEVDILDANVPP 40 (121)
T ss_dssp HHHHHHHHTTBEEEEEESSB-H
T ss_pred HHHHHHHHCCCeEEEECCCCCH
Confidence 3567788899999999865533
No 462
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=40.32 E-value=23 Score=23.72 Aligned_cols=19 Identities=37% Similarity=0.321 Sum_probs=15.3
Q ss_pred HHHHhhCCCcEEEEeeCCC
Q 034688 4 AVELLDQGHEVDIYELRSF 22 (87)
Q Consensus 4 A~~L~~~G~~V~v~E~~~~ 22 (87)
|..|+++|++|+-+|-++.
T Consensus 49 a~~LA~~G~~V~gvD~S~~ 67 (213)
T TIGR03840 49 LAWLAEQGHRVLGVELSEI 67 (213)
T ss_pred HHHHHhCCCeEEEEeCCHH
Confidence 5788999999999985443
No 463
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=40.20 E-value=33 Score=18.50 Aligned_cols=16 Identities=25% Similarity=0.372 Sum_probs=13.4
Q ss_pred hHHHHhhCCCcEEEEe
Q 034688 3 TAVELLDQGHEVDIYE 18 (87)
Q Consensus 3 aA~~L~~~G~~V~v~E 18 (87)
.|..|++.|++|.+++
T Consensus 19 l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 19 LAAALAKRGKRVLLID 34 (99)
T ss_pred HHHHHHHCCCeEEEEC
Confidence 4677888899999988
No 464
>PLN02785 Protein HOTHEAD
Probab=40.16 E-value=22 Score=27.62 Aligned_cols=20 Identities=20% Similarity=0.134 Sum_probs=16.7
Q ss_pred hhHHHHhhCCCcEEEEeeCCC
Q 034688 2 STAVELLDQGHEVDIYELRSF 22 (87)
Q Consensus 2 ~aA~~L~~~G~~V~v~E~~~~ 22 (87)
.+|.+|++ +.+|+|+|+.+.
T Consensus 69 ~lA~~Ls~-~~~VLllE~G~~ 88 (587)
T PLN02785 69 PLAATLSQ-NFSVLLLERGGV 88 (587)
T ss_pred HHHHHHhc-CCcEEEEecCCC
Confidence 46888888 699999999864
No 465
>PF01624 MutS_I: MutS domain I C-terminus.; InterPro: IPR007695 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the N-terminal domain of proteins in the MutS family of DNA mismatch repair proteins, as well as closely related proteins. The N-terminal domain of MutS is responsible for mismatch recognition and forms a 6-stranded mixed beta-sheet surrounded by three alpha-helices, which is similar to the structure of tRNA endonuclease. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein.; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 3THY_B 3THZ_B 3THW_B 3THX_B 2WTU_A 1OH7_A ....
Probab=39.83 E-value=35 Score=20.34 Aligned_cols=21 Identities=33% Similarity=0.387 Sum_probs=13.9
Q ss_pred HHHHhhCCCcEEEEeeCCCcC
Q 034688 4 AVELLDQGHEVDIYELRSFIG 24 (87)
Q Consensus 4 A~~L~~~G~~V~v~E~~~~~G 24 (87)
+..|.++|++|.|+|..+...
T Consensus 70 l~~Ll~~G~~V~i~~q~~~~~ 90 (113)
T PF01624_consen 70 LKKLLEAGYRVAIYEQVETPS 90 (113)
T ss_dssp HHHHHHTT-EEEEEEE-S-HH
T ss_pred HHHHHHcCCEEEEEEecCCcc
Confidence 456777899999999886643
No 466
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=39.72 E-value=34 Score=19.20 Aligned_cols=19 Identities=37% Similarity=0.347 Sum_probs=15.6
Q ss_pred hHHHHhhCCCcEEEEeeCC
Q 034688 3 TAVELLDQGHEVDIYELRS 21 (87)
Q Consensus 3 aA~~L~~~G~~V~v~E~~~ 21 (87)
.|..|+++|+.|..+|-+.
T Consensus 35 ~a~~L~~~G~~V~~~D~rG 53 (79)
T PF12146_consen 35 LAEFLAEQGYAVFAYDHRG 53 (79)
T ss_pred HHHHHHhCCCEEEEECCCc
Confidence 4778999999999998543
No 467
>cd01012 YcaC_related YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.
Probab=39.57 E-value=27 Score=21.93 Aligned_cols=17 Identities=41% Similarity=0.606 Sum_probs=14.7
Q ss_pred hhHHHHhhCCCcEEEEe
Q 034688 2 STAVELLDQGHEVDIYE 18 (87)
Q Consensus 2 ~aA~~L~~~G~~V~v~E 18 (87)
++|..+.++|++|+|.+
T Consensus 104 ~Ta~~a~~~g~~v~v~~ 120 (157)
T cd01012 104 QTALDLLEEGYEVFVVA 120 (157)
T ss_pred HHHHHHHHCCCEEEEEe
Confidence 57888888999999987
No 468
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=39.50 E-value=22 Score=27.05 Aligned_cols=20 Identities=30% Similarity=0.356 Sum_probs=16.8
Q ss_pred hHHHHhhCCCcEEEEeeCCC
Q 034688 3 TAVELLDQGHEVDIYELRSF 22 (87)
Q Consensus 3 aA~~L~~~G~~V~v~E~~~~ 22 (87)
-|..|+++|++|+++|+++.
T Consensus 22 IA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 22 IAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred HHHHHHhCCCeEEEEeCCHH
Confidence 47788999999999987665
No 469
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=39.25 E-value=35 Score=24.98 Aligned_cols=23 Identities=26% Similarity=0.199 Sum_probs=18.5
Q ss_pred hHHHHhhCCCcEEEEeeCCCcCc
Q 034688 3 TAVELLDQGHEVDIYELRSFIGG 25 (87)
Q Consensus 3 aA~~L~~~G~~V~v~E~~~~~GG 25 (87)
.|..|++.|.+|+|+|+.+++..
T Consensus 173 ~A~~l~~~g~~Vtli~~~~~~l~ 195 (441)
T PRK08010 173 FASMFANFGSKVTILEAASLFLP 195 (441)
T ss_pred HHHHHHHCCCeEEEEecCCCCCC
Confidence 46777889999999999877653
No 470
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=39.02 E-value=26 Score=24.65 Aligned_cols=21 Identities=24% Similarity=0.248 Sum_probs=17.1
Q ss_pred hhHHHHhhCCCcEEEEeeCCC
Q 034688 2 STAVELLDQGHEVDIYELRSF 22 (87)
Q Consensus 2 ~aA~~L~~~G~~V~v~E~~~~ 22 (87)
+.|..|+++|++|+++++++.
T Consensus 18 ~ia~~L~~~G~~V~~~~r~~~ 38 (328)
T PRK14618 18 ALAVLAASKGVPVRLWARRPE 38 (328)
T ss_pred HHHHHHHHCCCeEEEEeCCHH
Confidence 357788999999999998643
No 471
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=38.96 E-value=27 Score=24.48 Aligned_cols=20 Identities=15% Similarity=0.117 Sum_probs=17.2
Q ss_pred hhHHHHhhCCCcEEEEeeCC
Q 034688 2 STAVELLDQGHEVDIYELRS 21 (87)
Q Consensus 2 ~aA~~L~~~G~~V~v~E~~~ 21 (87)
+.|..|+++|++|+++++.+
T Consensus 16 ~~A~~L~~~G~~V~~~~r~~ 35 (341)
T PRK08229 16 YLGGRLAAAGADVTLIGRAR 35 (341)
T ss_pred HHHHHHHhcCCcEEEEecHH
Confidence 46888999999999999865
No 472
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=38.86 E-value=60 Score=18.60 Aligned_cols=35 Identities=26% Similarity=0.372 Sum_probs=19.6
Q ss_pred HHHHhhCCCcEEEEeeCCC--cCceEEEE---eccCCeEEee
Q 034688 4 AVELLDQGHEVDIYELRSF--IGGKVASF---VCKRGNHIEI 40 (87)
Q Consensus 4 A~~L~~~G~~V~v~E~~~~--~GG~~~s~---~~~~g~~~d~ 40 (87)
..+|.++|.++ ....+. .+|+-..+ ++.+|.++|.
T Consensus 87 ~~~l~~~G~~~--~~~~~~~~~~g~~~~~~~~~dp~G~~~E~ 126 (128)
T TIGR03081 87 LETLKEKGVRL--IDEEPRIGAGGKPVAFLHPKSTGGVLIEL 126 (128)
T ss_pred HHHHHHCCCcc--cCCCCccCCCCCEEEEecccccCcEEEEe
Confidence 44667778764 322233 35543333 4667888875
No 473
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=38.86 E-value=32 Score=22.72 Aligned_cols=20 Identities=20% Similarity=0.401 Sum_probs=17.0
Q ss_pred hhHHHHhhCCCcEEEEeeCC
Q 034688 2 STAVELLDQGHEVDIYELRS 21 (87)
Q Consensus 2 ~aA~~L~~~G~~V~v~E~~~ 21 (87)
.+|..|.+.|.+|+++|.++
T Consensus 42 ~~A~~L~~~G~~Vvv~D~~~ 61 (200)
T cd01075 42 KLAEHLLEEGAKLIVADINE 61 (200)
T ss_pred HHHHHHHHCCCEEEEEcCCH
Confidence 47889999999999998754
No 474
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=38.80 E-value=30 Score=23.34 Aligned_cols=21 Identities=33% Similarity=0.400 Sum_probs=17.4
Q ss_pred hhHHHHhhCCCcEEEEeeCCC
Q 034688 2 STAVELLDQGHEVDIYELRSF 22 (87)
Q Consensus 2 ~aA~~L~~~G~~V~v~E~~~~ 22 (87)
+.|..|.+.|+.|+++|+.+.
T Consensus 14 ~va~~L~~~g~~Vv~Id~d~~ 34 (225)
T COG0569 14 SVARELSEEGHNVVLIDRDEE 34 (225)
T ss_pred HHHHHHHhCCCceEEEEcCHH
Confidence 468889999999999986553
No 475
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=38.74 E-value=25 Score=26.57 Aligned_cols=22 Identities=14% Similarity=0.321 Sum_probs=18.3
Q ss_pred hhHHHHhhCCCcEEEEeeCCCc
Q 034688 2 STAVELLDQGHEVDIYELRSFI 23 (87)
Q Consensus 2 ~aA~~L~~~G~~V~v~E~~~~~ 23 (87)
+.|..|+++|++|++|++.+..
T Consensus 15 ~lA~nL~~~G~~V~v~dr~~~~ 36 (470)
T PTZ00142 15 NLALNIASRGFKISVYNRTYEK 36 (470)
T ss_pred HHHHHHHHCCCeEEEEeCCHHH
Confidence 4588899999999999887653
No 476
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=38.54 E-value=79 Score=19.54 Aligned_cols=40 Identities=13% Similarity=0.009 Sum_probs=22.9
Q ss_pred hHHHHhhCCCcEEEEeeCCCc--CceEEEEeccCCeEEeeeeE
Q 034688 3 TAVELLDQGHEVDIYELRSFI--GGKVASFVCKRGNHIEISLH 43 (87)
Q Consensus 3 aA~~L~~~G~~V~v~E~~~~~--GG~~~s~~~~~g~~~d~G~~ 43 (87)
+..+|.++|+++.- +-.... +++.--+++++|..+|.-..
T Consensus 90 ~~~~L~~~G~~v~~-~~~~~~~~~~~~~y~~DPdG~~iEl~~~ 131 (154)
T cd07237 90 AYDRVRARGIPIAM-TLGRHTNDRMLSFYVRTPSGFAIEYGWG 131 (154)
T ss_pred HHHHHHHcCCceec-cCCccCCCCcEEEEEECCCCcEEEeccC
Confidence 45567788987641 211222 23333347788999888543
No 477
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=38.50 E-value=32 Score=23.62 Aligned_cols=18 Identities=22% Similarity=0.327 Sum_probs=15.9
Q ss_pred hhHHHHhhCCCcEEEEee
Q 034688 2 STAVELLDQGHEVDIYEL 19 (87)
Q Consensus 2 ~aA~~L~~~G~~V~v~E~ 19 (87)
+.|..|+++|++|+++.+
T Consensus 14 ~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 14 TFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred HHHHHHHHCCCceEEEec
Confidence 468889999999999987
No 478
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=38.47 E-value=27 Score=24.57 Aligned_cols=21 Identities=24% Similarity=0.161 Sum_probs=17.3
Q ss_pred hhHHHHhhCCCcEEEEeeCCC
Q 034688 2 STAVELLDQGHEVDIYELRSF 22 (87)
Q Consensus 2 ~aA~~L~~~G~~V~v~E~~~~ 22 (87)
+.|++|.+.|++|.+.|-..-
T Consensus 12 gva~~L~~aGf~Vv~~e~~~P 32 (256)
T TIGR03309 12 GVAHRLHRSGFKVLMTETEQP 32 (256)
T ss_pred HHHHHHHhCCCEEEEccCCCC
Confidence 358899999999999986544
No 479
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=38.32 E-value=68 Score=21.90 Aligned_cols=37 Identities=22% Similarity=0.144 Sum_probs=23.1
Q ss_pred hHHHHhhCCCcEEEEee---CCCcCceEEEEeccCCeEEe
Q 034688 3 TAVELLDQGHEVDIYEL---RSFIGGKVASFVCKRGNHIE 39 (87)
Q Consensus 3 aA~~L~~~G~~V~v~E~---~~~~GG~~~s~~~~~g~~~d 39 (87)
.+.+|.++|+.+...+. ...-+++...+++++|..+|
T Consensus 75 ~~~~L~~~Gv~~~~~~~~~~~~~~~~~~~~f~DPdGn~lE 114 (286)
T TIGR03213 75 VKEKLEKAGVAVTVASAAEARERGVLGLIKFTDPGGNPLE 114 (286)
T ss_pred HHHHHHHcCCceEECCHHHhhhccceEEEEEECCCCCEEE
Confidence 34578888998766542 22333455556777787766
No 480
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=38.27 E-value=25 Score=25.97 Aligned_cols=20 Identities=30% Similarity=0.378 Sum_probs=17.4
Q ss_pred ChhHHHHhhCCCcEEEEeeC
Q 034688 1 MSTAVELLDQGHEVDIYELR 20 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~ 20 (87)
+++|..|.+.|++|++.|..
T Consensus 22 ~~~a~~l~~~G~~v~~~D~~ 41 (460)
T PRK01390 22 LATARALVAGGAEVIAWDDN 41 (460)
T ss_pred HHHHHHHHHCCCEEEEECCC
Confidence 46799999999999999965
No 481
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=38.19 E-value=32 Score=25.73 Aligned_cols=20 Identities=5% Similarity=-0.135 Sum_probs=17.7
Q ss_pred hhHHHHhhCCCcEEEEeeCC
Q 034688 2 STAVELLDQGHEVDIYELRS 21 (87)
Q Consensus 2 ~aA~~L~~~G~~V~v~E~~~ 21 (87)
+||..|.+.|.+|++.|.++
T Consensus 22 ~~~~~l~~~g~~v~~~d~~~ 41 (468)
T PRK04690 22 AAYRALRAHLPAQALTLFCN 41 (468)
T ss_pred HHHHHHHHcCCEEEEEcCCC
Confidence 68999999999999999654
No 482
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=38.11 E-value=27 Score=28.36 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=19.9
Q ss_pred hhHHHHhhCCCcEEEEeeCCCcCc
Q 034688 2 STAVELLDQGHEVDIYELRSFIGG 25 (87)
Q Consensus 2 ~aA~~L~~~G~~V~v~E~~~~~GG 25 (87)
-+|..|++.|.+|+|+|+.+++-.
T Consensus 159 E~A~~L~~~G~~VtvVe~~~~ll~ 182 (847)
T PRK14989 159 EAAGALKNLGVETHVIEFAPMLMA 182 (847)
T ss_pred HHHHHHHHcCCeEEEEeccccchh
Confidence 468889999999999999887543
No 483
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=37.98 E-value=31 Score=23.88 Aligned_cols=20 Identities=35% Similarity=0.647 Sum_probs=16.6
Q ss_pred hhHHHHhhCCCcEEEEeeCC
Q 034688 2 STAVELLDQGHEVDIYELRS 21 (87)
Q Consensus 2 ~aA~~L~~~G~~V~v~E~~~ 21 (87)
+.|..|.++|++|++|++++
T Consensus 10 ~mA~~L~~~G~~V~v~dr~~ 29 (288)
T TIGR01692 10 PMAANLLKAGHPVRVFDLFP 29 (288)
T ss_pred HHHHHHHhCCCeEEEEeCCH
Confidence 35778889999999998764
No 484
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=37.95 E-value=85 Score=18.74 Aligned_cols=38 Identities=13% Similarity=-0.065 Sum_probs=23.8
Q ss_pred HHHHhhCCCcEEEEeeCCCcC-ceEEEEeccCCeEEeeee
Q 034688 4 AVELLDQGHEVDIYELRSFIG-GKVASFVCKRGNHIEISL 42 (87)
Q Consensus 4 A~~L~~~G~~V~v~E~~~~~G-G~~~s~~~~~g~~~d~G~ 42 (87)
..+|.++|.++.. +-....+ .+....++.+|.+++...
T Consensus 84 ~~~l~~~G~~v~~-~p~~~~~~~~~~~i~dp~G~~ie~~~ 122 (136)
T cd08342 84 YERAVARGAKPVQ-EPVEEPGELKIAAIKGYGDSLHTLVD 122 (136)
T ss_pred HHHHHHcCCeEcc-CceecCCeEEEEEEeccCCcEEEEEe
Confidence 3456678887753 4444333 345557777888888755
No 485
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=37.78 E-value=29 Score=24.04 Aligned_cols=21 Identities=19% Similarity=0.213 Sum_probs=16.9
Q ss_pred hhHHHHhhCCCcEEEEeeCCC
Q 034688 2 STAVELLDQGHEVDIYELRSF 22 (87)
Q Consensus 2 ~aA~~L~~~G~~V~v~E~~~~ 22 (87)
+.|..|+++|++|+++|.++.
T Consensus 17 ~iA~~la~~G~~V~l~d~~~~ 37 (291)
T PRK06035 17 GIAQVFARTGYDVTIVDVSEE 37 (291)
T ss_pred HHHHHHHhcCCeEEEEeCCHH
Confidence 356778899999999997653
No 486
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=37.59 E-value=28 Score=25.48 Aligned_cols=22 Identities=18% Similarity=0.182 Sum_probs=17.9
Q ss_pred ChhHHHHhhCCCcEEEEeeCCC
Q 034688 1 MSTAVELLDQGHEVDIYELRSF 22 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~~~ 22 (87)
++++..|+++|++|++.|..+.
T Consensus 19 ~s~~~~l~~~G~~v~~~D~~~~ 40 (438)
T PRK03806 19 LSCVDFFLARGVTPRVIDTRIT 40 (438)
T ss_pred HHHHHHHHHCCCeEEEEcCCCC
Confidence 3677789999999999997543
No 487
>PRK11609 nicotinamidase/pyrazinamidase; Provisional
Probab=37.45 E-value=29 Score=22.88 Aligned_cols=18 Identities=22% Similarity=0.331 Sum_probs=15.5
Q ss_pred ChhHHHHhhCCCcEEEEe
Q 034688 1 MSTAVELLDQGHEVDIYE 18 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E 18 (87)
+++|....+.||+|+|++
T Consensus 157 ~~Ta~dA~~~gy~v~v~~ 174 (212)
T PRK11609 157 KFTVLDALALGYQVNVIT 174 (212)
T ss_pred HHHHHHHHHCCCEEEEEe
Confidence 367888889999999998
No 488
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=37.40 E-value=33 Score=25.00 Aligned_cols=16 Identities=44% Similarity=0.694 Sum_probs=14.4
Q ss_pred hHHHHhhCCCcEEEEe
Q 034688 3 TAVELLDQGHEVDIYE 18 (87)
Q Consensus 3 aA~~L~~~G~~V~v~E 18 (87)
++..|.++|++|+|+|
T Consensus 16 tv~~Ll~~G~~vvV~D 31 (329)
T COG1087 16 TVRQLLKTGHEVVVLD 31 (329)
T ss_pred HHHHHHHCCCeEEEEe
Confidence 5678999999999998
No 489
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=37.36 E-value=36 Score=18.95 Aligned_cols=28 Identities=25% Similarity=0.135 Sum_probs=20.1
Q ss_pred hHHHHhhCCCcEEEEeeCCCcCceEEEE
Q 034688 3 TAVELLDQGHEVDIYELRSFIGGKVASF 30 (87)
Q Consensus 3 aA~~L~~~G~~V~v~E~~~~~GG~~~s~ 30 (87)
.|..|+++|++|.+..+...+|-++...
T Consensus 23 la~~Lr~~g~~v~~d~~~~~l~k~i~~a 50 (94)
T cd00861 23 LYAELQAAGVDVLLDDRNERPGVKFADA 50 (94)
T ss_pred HHHHHHHCCCEEEEECCCCCcccchhHH
Confidence 3566778899999877666777666443
No 490
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=37.02 E-value=17 Score=23.32 Aligned_cols=16 Identities=25% Similarity=0.281 Sum_probs=13.0
Q ss_pred hhHHHHhhCCCcEEEE
Q 034688 2 STAVELLDQGHEVDIY 17 (87)
Q Consensus 2 ~aA~~L~~~G~~V~v~ 17 (87)
.+++.|.++|++|+|-
T Consensus 18 Yl~~~Lk~~G~~v~Va 33 (139)
T PF09001_consen 18 YLSYKLKKKGFEVVVA 33 (139)
T ss_dssp HHHHHHHCTTEEEEEE
T ss_pred HHHHHHHhcCCeEEEe
Confidence 4677888899999986
No 491
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=36.98 E-value=41 Score=23.57 Aligned_cols=20 Identities=15% Similarity=0.094 Sum_probs=16.8
Q ss_pred hhHHHHhhCCCcEEEEeeCC
Q 034688 2 STAVELLDQGHEVDIYELRS 21 (87)
Q Consensus 2 ~aA~~L~~~G~~V~v~E~~~ 21 (87)
+-|..|+++|++|+++.+++
T Consensus 19 ~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 19 FYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred HHHHHHHHCCCeEEEEEeCC
Confidence 35788999999999998765
No 492
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=36.86 E-value=32 Score=27.55 Aligned_cols=24 Identities=17% Similarity=0.151 Sum_probs=18.8
Q ss_pred ChhHHHHhhC---CCcEEEEeeCCCcC
Q 034688 1 MSTAVELLDQ---GHEVDIYELRSFIG 24 (87)
Q Consensus 1 L~aA~~L~~~---G~~V~v~E~~~~~G 24 (87)
++||..|++. +++|+|+|++++++
T Consensus 11 ~~aa~~l~~~~~~~~~Itvi~~e~~~~ 37 (785)
T TIGR02374 11 HRCIEEVLKLNRHMFEITIFGEEPHPN 37 (785)
T ss_pred HHHHHHHHhcCCCCCeEEEEeCCCCCC
Confidence 3577777653 57999999999985
No 493
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=36.82 E-value=30 Score=23.83 Aligned_cols=19 Identities=11% Similarity=0.338 Sum_probs=16.2
Q ss_pred hHHHHhhCCCcEEEEeeCC
Q 034688 3 TAVELLDQGHEVDIYELRS 21 (87)
Q Consensus 3 aA~~L~~~G~~V~v~E~~~ 21 (87)
.|..|++.|++|+++++++
T Consensus 14 iA~~l~~~G~~V~~~dr~~ 32 (291)
T TIGR01505 14 MSINLAKAGYQLHVTTIGP 32 (291)
T ss_pred HHHHHHHCCCeEEEEcCCH
Confidence 5678889999999999775
No 494
>cd01013 isochorismatase Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase, catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of a vinyl ether, an uncommon reaction in biological systems. Isochorismatase is part of the phenazine biosynthesis pathway. Phenazines are antimicrobial compounds that provide the competitive advantage for certain bacteria.
Probab=36.75 E-value=28 Score=22.97 Aligned_cols=18 Identities=22% Similarity=0.198 Sum_probs=15.4
Q ss_pred ChhHHHHhhCCCcEEEEe
Q 034688 1 MSTAVELLDQGHEVDIYE 18 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E 18 (87)
+++|....++||+|+|++
T Consensus 157 ~~Ta~~A~~~Gy~v~vv~ 174 (203)
T cd01013 157 LSTAVDAFMRDIQPFVVA 174 (203)
T ss_pred HHHHHHHHHCCCeEEEec
Confidence 367888889999999987
No 495
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=36.45 E-value=18 Score=24.99 Aligned_cols=21 Identities=29% Similarity=0.222 Sum_probs=11.9
Q ss_pred HHHHhhCCCcEEEEeeCCCcC
Q 034688 4 AVELLDQGHEVDIYELRSFIG 24 (87)
Q Consensus 4 A~~L~~~G~~V~v~E~~~~~G 24 (87)
|..|+..|.+|+.+|+++.+-
T Consensus 90 a~vlA~~G~~V~~lErspvia 110 (234)
T PF04445_consen 90 AFVLASLGCKVTGLERSPVIA 110 (234)
T ss_dssp HHHHHHHT--EEEEE--HHHH
T ss_pred HHHHHccCCeEEEEECCHHHH
Confidence 445566688999999887653
No 496
>PRK10742 putative methyltransferase; Provisional
Probab=36.37 E-value=22 Score=24.88 Aligned_cols=21 Identities=24% Similarity=0.311 Sum_probs=17.5
Q ss_pred HHHHhhCCCcEEEEeeCCCcC
Q 034688 4 AVELLDQGHEVDIYELRSFIG 24 (87)
Q Consensus 4 A~~L~~~G~~V~v~E~~~~~G 24 (87)
|..|+..|.+|+.+|+++.+-
T Consensus 103 a~~las~G~~V~~vEr~p~va 123 (250)
T PRK10742 103 AFVLASVGCRVRMLERNPVVA 123 (250)
T ss_pred HHHHHHcCCEEEEEECCHHHH
Confidence 677888899999999988654
No 497
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=36.31 E-value=72 Score=17.07 Aligned_cols=35 Identities=37% Similarity=0.282 Sum_probs=19.8
Q ss_pred HHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEe
Q 034688 5 VELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIE 39 (87)
Q Consensus 5 ~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d 39 (87)
.+|.++|..+.---.....+++.....+++|..++
T Consensus 77 ~~l~~~g~~~~~~~~~~~~~~~~~~~~Dp~G~~~~ 111 (112)
T cd06587 77 ERLKAAGVEVLGEPREEPWGGRVAYFRDPDGNLIE 111 (112)
T ss_pred HHHHHcCCcccCCCcCCCCCcEEEEEECCCCcEEe
Confidence 34556665333211125567777777777776664
No 498
>TIGR03614 RutB pyrimidine utilization protein B. RL Proc Natl Acad Sci U S A. 2006 Mar 28;103(13):5114-9. Epub 2006 Mar 15.
Probab=36.30 E-value=29 Score=23.30 Aligned_cols=20 Identities=15% Similarity=-0.203 Sum_probs=16.5
Q ss_pred ChhHHHHhhCCCcEEEEeeC
Q 034688 1 MSTAVELLDQGHEVDIYELR 20 (87)
Q Consensus 1 L~aA~~L~~~G~~V~v~E~~ 20 (87)
+++|....+.||+|+|++=.
T Consensus 166 ~sTar~A~~~Gy~v~vv~Da 185 (226)
T TIGR03614 166 ESTLRDGFHLEYFGVVLEDA 185 (226)
T ss_pred HHHHHHHHHCCCEEEEechh
Confidence 36788899999999999833
No 499
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=36.20 E-value=29 Score=27.83 Aligned_cols=22 Identities=41% Similarity=0.344 Sum_probs=18.5
Q ss_pred Chh-HHHHhhCCCcEEEEeeCCC
Q 034688 1 MST-AVELLDQGHEVDIYELRSF 22 (87)
Q Consensus 1 L~a-A~~L~~~G~~V~v~E~~~~ 22 (87)
++| |..|.++|++|++.|..+.
T Consensus 17 ~salA~~L~~~G~~V~~sD~~~~ 39 (809)
T PRK14573 17 MSALAHILLDRGYSVSGSDLSEG 39 (809)
T ss_pred HHHHHHHHHHCCCeEEEECCCCC
Confidence 367 8999999999999997653
No 500
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=36.08 E-value=78 Score=18.88 Aligned_cols=35 Identities=17% Similarity=0.217 Sum_probs=22.3
Q ss_pred HHHHhhCCCcEEEEee-C-CCcCceEEEEeccCCeEEee
Q 034688 4 AVELLDQGHEVDIYEL-R-SFIGGKVASFVCKRGNHIEI 40 (87)
Q Consensus 4 A~~L~~~G~~V~v~E~-~-~~~GG~~~s~~~~~g~~~d~ 40 (87)
...|.++|++++ +. . ...+++...+++.+|..+|.
T Consensus 76 ~~~l~~~G~~~~--~~~~~~~~~~~~~~f~DPdG~~iEl 112 (131)
T cd08363 76 YTRLKEAGVNIL--PGRKRDVRDRKSIYFTDPDGHKLEV 112 (131)
T ss_pred HHHHHHcCCccc--CCCccccCcceEEEEECCCCCEEEE
Confidence 346677888753 22 1 22356666677888888887
Done!