BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034691
         (87 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q6UDJ5|DEN_PSHV1 Deneddylase UL36 OS=Psittacid herpesvirus 1 (isolate Amazon
            parrot/-/97-0001/1997) GN=UL36 PE=3 SV=1
          Length = 3195

 Score = 34.3 bits (77), Expect = 0.23,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 32   SDDVLLDADDSTDTTKNQSPCSKVRLALESGFWTFVDMASGKYLWRHLGSSSKRSL 87
            ++D L+DA +   TT+N   CS+   ALE   W  V+ A G   W     ++ R+L
Sbjct: 1028 ANDDLMDAVEDARTTRNTDSCSRAISALERIKWVIVE-AEGAGQWPKFAVAAARAL 1082


>sp|Q49110|ODP2_MYCCT Dihydrolipoyllysine-residue acetyltransferase component of
          pyruvate dehydrogenase complex OS=Mycoplasma capricolum
          subsp. capricolum (strain California kid / ATCC 27343 /
          NCTC 10154) GN=pdhC PE=3 SV=1
          Length = 438

 Score = 29.6 bits (65), Expect = 5.9,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 27/46 (58%)

Query: 11 LSATLAGFFVIRNLKSPQQQLSDDVLLDADDSTDTTKNQSPCSKVR 56
          + A +AG   + N+K+ Q+    DV+++ +D +DT+    P ++ +
Sbjct: 47 IPAPVAGKIAVINIKAGQEIKVGDVVMEIEDGSDTSATSEPKAETK 92


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.134    0.403 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,601,957
Number of Sequences: 539616
Number of extensions: 872179
Number of successful extensions: 1986
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1984
Number of HSP's gapped (non-prelim): 2
length of query: 87
length of database: 191,569,459
effective HSP length: 57
effective length of query: 30
effective length of database: 160,811,347
effective search space: 4824340410
effective search space used: 4824340410
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)