Query 034691
Match_columns 87
No_of_seqs 32 out of 34
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 05:29:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034691.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034691hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06679 DUF1180: Protein of u 86.6 0.62 1.3E-05 34.5 2.5 22 6-27 99-120 (163)
2 PRK11874 petL cytochrome b6-f 72.8 5.1 0.00011 22.6 2.6 20 6-25 9-28 (30)
3 PF06522 B12D: NADH-ubiquinone 71.0 5.2 0.00011 25.5 2.7 25 6-30 10-34 (73)
4 CHL00190 psaM photosystem I su 70.4 6.4 0.00014 22.2 2.7 18 6-23 7-24 (30)
5 TIGR03053 PS_I_psaM photosyste 69.7 6.8 0.00015 21.8 2.7 18 6-23 6-23 (29)
6 PF07465 PsaM: Photosystem I p 68.6 7.7 0.00017 21.7 2.7 18 6-23 6-23 (29)
7 PRK11878 psaM photosystem I re 67.8 7.5 0.00016 22.5 2.7 18 6-23 10-27 (34)
8 KOG2592 Tumor differentially e 67.7 2.7 5.8E-05 35.7 1.1 18 49-66 99-116 (426)
9 PF02411 MerT: MerT mercuric t 63.7 18 0.00039 25.3 4.5 26 3-28 49-74 (116)
10 smart00564 PQQ beta-propeller 54.8 1.3 2.8E-05 22.7 -1.9 18 60-77 14-31 (33)
11 COG3745 CpaB Flp pilus assembl 50.9 21 0.00046 28.8 3.5 28 1-28 1-31 (276)
12 PF03672 UPF0154: Uncharacteri 49.4 21 0.00045 23.1 2.6 18 6-23 3-20 (64)
13 PRK03427 cell division protein 44.9 22 0.00047 29.3 2.7 15 1-15 2-16 (333)
14 TIGR01843 type_I_hlyD type I s 43.9 23 0.00049 27.0 2.6 26 3-28 3-28 (423)
15 KOG4583 Membrane-associated ER 43.8 35 0.00075 28.9 3.8 24 4-27 286-309 (391)
16 PRK13751 putative mercuric tra 42.6 73 0.0016 22.6 4.8 23 3-25 49-71 (116)
17 PF12270 Cyt_c_ox_IV: Cytochro 41.4 51 0.0011 24.0 3.9 28 8-35 44-73 (137)
18 PF01011 PQQ: PQQ enzyme repea 39.9 2.7 5.9E-05 23.0 -2.2 20 61-80 9-28 (38)
19 PF10136 SpecificRecomb: Site- 39.7 20 0.00043 31.6 1.9 14 7-20 478-491 (643)
20 PRK04335 cell division protein 39.7 22 0.00047 29.0 2.0 27 1-27 1-27 (313)
21 PF14138 COX16: Cytochrome c o 38.0 17 0.00036 23.8 0.9 23 4-26 1-23 (80)
22 PF08520 DUF1748: Fungal prote 37.7 24 0.00052 22.9 1.6 20 8-29 11-30 (70)
23 PF10833 DUF2572: Protein of u 37.3 31 0.00068 26.8 2.4 16 6-21 7-22 (221)
24 TIGR02833 spore_III_AB stage I 37.1 17 0.00036 26.3 0.9 23 6-28 5-27 (170)
25 PF04906 Tweety: Tweety; Inte 36.9 56 0.0012 26.7 3.9 16 15-30 381-396 (406)
26 PRK08307 stage III sporulation 36.6 18 0.0004 26.1 1.0 23 6-28 6-28 (171)
27 PF10066 DUF2304: Uncharacteri 35.8 50 0.0011 22.1 3.0 26 1-27 1-26 (115)
28 PF02529 PetG: Cytochrome B6-F 35.8 47 0.001 19.7 2.5 16 6-21 9-24 (37)
29 PF09548 Spore_III_AB: Stage I 34.2 19 0.00042 25.6 0.8 23 6-28 5-27 (170)
30 PF09615 Cas_Csy3: CRISPR-asso 33.8 7.6 0.00017 31.8 -1.5 16 65-80 130-145 (331)
31 PRK10476 multidrug resistance 32.2 38 0.00082 26.0 2.2 23 3-25 13-35 (346)
32 PF13706 PepSY_TM_3: PepSY-ass 30.4 52 0.0011 18.3 2.0 13 6-18 19-31 (37)
33 PF13257 DUF4048: Domain of un 29.7 29 0.00062 27.5 1.2 13 56-68 90-102 (253)
34 TIGR02566 cas_Csy3 CRISPR-asso 29.0 10 0.00022 31.4 -1.5 17 65-81 134-150 (341)
35 PF07543 PGA2: Protein traffic 28.9 33 0.00071 24.7 1.3 14 4-22 18-31 (140)
36 CHL00008 petG cytochrome b6/f 28.6 62 0.0013 19.1 2.2 17 6-22 9-25 (37)
37 cd04235 AAK_CK AAK_CK: Carbama 28.0 17 0.00037 29.1 -0.3 33 52-86 134-166 (308)
38 TIGR02205 septum_zipA cell div 28.0 39 0.00085 26.9 1.7 12 4-15 2-13 (284)
39 PRK00665 petG cytochrome b6-f 26.7 71 0.0015 18.9 2.2 17 6-22 9-25 (37)
40 PF06364 DUF1068: Protein of u 26.2 50 0.0011 25.3 1.9 18 4-21 8-25 (176)
41 COG4389 Site-specific recombin 26.2 45 0.00097 29.8 1.8 14 7-20 502-515 (677)
42 PF13334 DUF4094: Domain of un 25.9 89 0.0019 21.0 2.9 24 7-30 6-29 (95)
43 PF01222 ERG4_ERG24: Ergostero 25.7 43 0.00093 27.8 1.6 57 6-67 304-360 (432)
44 PRK01844 hypothetical protein; 24.8 90 0.0019 20.7 2.7 17 7-23 11-27 (72)
45 PF12588 PSDC: Phophatidylseri 24.7 42 0.00091 24.2 1.2 21 2-22 74-94 (141)
46 PRK00523 hypothetical protein; 24.6 91 0.002 20.6 2.7 17 7-23 12-28 (72)
47 PF13808 DDE_Tnp_1_assoc: DDE_ 22.7 66 0.0014 20.7 1.8 17 6-22 24-40 (90)
48 PF10161 DDDD: Putative mitoch 22.5 20 0.00043 24.1 -0.8 23 4-26 40-62 (79)
49 PF05545 FixQ: Cbb3-type cytoc 22.3 1.1E+02 0.0024 17.6 2.5 19 6-24 13-31 (49)
50 PF11808 DUF3329: Domain of un 22.2 1E+02 0.0022 20.0 2.6 12 6-17 12-23 (90)
51 PF01810 LysE: LysE type trans 21.9 2.2E+02 0.0049 19.5 4.4 26 5-30 59-84 (191)
52 PF09527 ATPase_gene1: Putativ 21.6 1.3E+02 0.0029 17.4 2.8 20 6-25 36-55 (55)
53 KOG3393 Predicted membrane pro 21.6 32 0.0007 25.8 0.1 17 55-71 26-42 (157)
54 PF14851 FAM176: FAM176 family 21.5 99 0.0021 22.8 2.6 18 3-20 19-36 (153)
55 PF14946 DUF4501: Domain of un 20.4 87 0.0019 24.1 2.2 25 6-30 99-123 (180)
No 1
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=86.60 E-value=0.62 Score=34.48 Aligned_cols=22 Identities=36% Similarity=0.490 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCCC
Q 034691 6 LILIFLSATLAGFFVIRNLKSP 27 (87)
Q Consensus 6 ~ILIFlSAtLAGffv~r~l~s~ 27 (87)
.||+.||+++..||++|.+|..
T Consensus 99 ~Vl~g~s~l~i~yfvir~~R~r 120 (163)
T PF06679_consen 99 YVLVGLSALAILYFVIRTFRLR 120 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 5889999999999999999876
No 2
>PRK11874 petL cytochrome b6-f complex subunit PetL; Reviewed
Probab=72.78 E-value=5.1 Score=22.64 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHhhcC
Q 034691 6 LILIFLSATLAGFFVIRNLK 25 (87)
Q Consensus 6 ~ILIFlSAtLAGffv~r~l~ 25 (87)
++.+|+.+.++-||.+|..+
T Consensus 9 ~l~~~~g~A~gl~fgLrsiK 28 (30)
T PRK11874 9 YLGVFTGIALGLYFGLRAAK 28 (30)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 67889999999999999865
No 3
>PF06522 B12D: NADH-ubiquinone reductase complex 1 MLRQ subunit; InterPro: IPR010530 The MLRQ subunit of mitochondrial NADH-ubiquinone reductase complex I is nuclear [] and is found in plants [], insects, fungi and higher metazoans []. It appears to act within the membrane and, in mammals, is highly expressed in muscle and neural tissue, indicative of a role in ATP generation [].
Probab=70.99 E-value=5.2 Score=25.50 Aligned_cols=25 Identities=16% Similarity=0.284 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCc
Q 034691 6 LILIFLSATLAGFFVIRNLKSPQQQ 30 (87)
Q Consensus 6 ~ILIFlSAtLAGffv~r~l~s~pe~ 30 (87)
|+.|-+-+++|+|+..|.+...||.
T Consensus 10 ~~~vg~a~~~a~~~~~r~l~~~PdV 34 (73)
T PF06522_consen 10 FVIVGVAVGGATFYLYRLLLTNPDV 34 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCe
Confidence 5667788999999999999999977
No 4
>CHL00190 psaM photosystem I subunit XII; Provisional
Probab=70.37 E-value=6.4 Score=22.23 Aligned_cols=18 Identities=22% Similarity=0.436 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 034691 6 LILIFLSATLAGFFVIRN 23 (87)
Q Consensus 6 ~ILIFlSAtLAGffv~r~ 23 (87)
++..++.|.++|++++|-
T Consensus 7 i~iAL~~Al~~~iLA~rL 24 (30)
T CHL00190 7 IFIALFLALTTGILAIRL 24 (30)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566788999999999973
No 5
>TIGR03053 PS_I_psaM photosystem I reaction center subunit XII. Members of this protein family are PsaM, which is subunit XII of the photosystem I reaction center. This protein is found in both the Cyanobacteria and the chloroplasts of plants, but is absent from non-oxygenic photosynthetic bacteria such as Rhodobacter sphaeroides. Species that contain photosystem I also contain photosystem II, which splits water and releases molecular oxygen. The seed alignment for this model includes sequences from Pfam model pfam07465 and additional sequences, as from Prochlorococcus.
Probab=69.72 E-value=6.8 Score=21.84 Aligned_cols=18 Identities=22% Similarity=0.525 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 034691 6 LILIFLSATLAGFFVIRN 23 (87)
Q Consensus 6 ~ILIFlSAtLAGffv~r~ 23 (87)
+++.++.|.++|++++|-
T Consensus 6 i~iaL~~Al~~~iLA~rL 23 (29)
T TIGR03053 6 IFIALVIALIAGILALRL 23 (29)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566788999999999973
No 6
>PF07465 PsaM: Photosystem I protein M (PsaM); InterPro: IPR010010 Members of this protein family are PsaM, which is subunit XII of the photosystem I reaction centre. PsaM forms part of the photosystem I complex and its binding is stabilised by PsaI []. This protein is found in both the Cyanobacteria and the chloroplasts of plants, but is absent from non-oxygenic photosynthetic bacteria such as Rhodobacter sphaeroides. Species that contain photosystem I also contain photosystem II, which splits water and releases molecular oxygen.; GO: 0015979 photosynthesis, 0009522 photosystem I, 0030094 plasma membrane-derived photosystem I; PDB: 3PCQ_M 1JB0_M.
Probab=68.63 E-value=7.7 Score=21.71 Aligned_cols=18 Identities=17% Similarity=0.492 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 034691 6 LILIFLSATLAGFFVIRN 23 (87)
Q Consensus 6 ~ILIFlSAtLAGffv~r~ 23 (87)
++..++.|.++|++++|-
T Consensus 6 i~iAL~~Al~~~iLA~rL 23 (29)
T PF07465_consen 6 IFIALVIALITGILALRL 23 (29)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 567788999999999873
No 7
>PRK11878 psaM photosystem I reaction center subunit XII; Reviewed
Probab=67.81 E-value=7.5 Score=22.47 Aligned_cols=18 Identities=22% Similarity=0.399 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 034691 6 LILIFLSATLAGFFVIRN 23 (87)
Q Consensus 6 ~ILIFlSAtLAGffv~r~ 23 (87)
+++.++.|.++|++++|-
T Consensus 10 i~iaL~~Al~~giLA~RL 27 (34)
T PRK11878 10 VFVALVVALHAGVLALRL 27 (34)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456788999999999983
No 8
>KOG2592 consensus Tumor differentially expressed (TDE) protein [Function unknown]
Probab=67.68 E-value=2.7 Score=35.69 Aligned_cols=18 Identities=33% Similarity=0.774 Sum_probs=14.7
Q ss_pred CCCchhHHHHHhhhhhhh
Q 034691 49 QSPCSKVRLALESGFWTF 66 (87)
Q Consensus 49 ~~~~skv~~~i~sGFWt~ 66 (87)
.+...+++.+||||||.|
T Consensus 99 Vkss~D~R~~iqng~W~f 116 (426)
T KOG2592|consen 99 VKSSKDPRAAIQNGFWFF 116 (426)
T ss_pred cCcCCCHHHHHHcCcHHH
Confidence 344667999999999986
No 9
>PF02411 MerT: MerT mercuric transport protein; InterPro: IPR003457 MerT is an mercuric transport integral membrane protein and is responsible for transport of the Hg2+ iron from periplasmic MerP (also part of the transport system) to mercuric reductase (MerA).; GO: 0015097 mercury ion transmembrane transporter activity, 0015694 mercury ion transport, 0016020 membrane
Probab=63.72 E-value=18 Score=25.26 Aligned_cols=26 Identities=23% Similarity=0.384 Sum_probs=22.6
Q ss_pred chHHHHHHHHHHHHHHHHHhhcCCCC
Q 034691 3 PLRLILIFLSATLAGFFVIRNLKSPQ 28 (87)
Q Consensus 3 PLR~ILIFlSAtLAGffv~r~l~s~p 28 (87)
|.|-++|.++..+=||--||..|.++
T Consensus 49 pyRp~fi~~tl~~lg~a~~~~yr~~~ 74 (116)
T PF02411_consen 49 PYRPYFIALTLLFLGYAFWRLYRPRK 74 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 89999999999999999999887543
No 10
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=54.77 E-value=1.3 Score=22.66 Aligned_cols=18 Identities=28% Similarity=0.591 Sum_probs=15.6
Q ss_pred hhhhhhheeccchhHHHH
Q 034691 60 ESGFWTFVDMASGKYLWR 77 (87)
Q Consensus 60 ~sGFWt~VDMASGrYLWr 77 (87)
.+|....+|..+|+-+|+
T Consensus 14 ~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 14 TDGTLYALDAKTGEILWT 31 (33)
T ss_pred CCCEEEEEEcccCcEEEE
Confidence 358889999999999996
No 11
>COG3745 CpaB Flp pilus assembly protein CpaB [Intracellular trafficking and secretion]
Probab=50.87 E-value=21 Score=28.85 Aligned_cols=28 Identities=36% Similarity=0.496 Sum_probs=22.5
Q ss_pred CcchH---HHHHHHHHHHHHHHHHhhcCCCC
Q 034691 1 MCPLR---LILIFLSATLAGFFVIRNLKSPQ 28 (87)
Q Consensus 1 MCPLR---~ILIFlSAtLAGffv~r~l~s~p 28 (87)
|-|.| +|++..+|.+|||+++..-..+|
T Consensus 1 M~~~rliil~~~~~~ag~ag~la~~~~~a~~ 31 (276)
T COG3745 1 MRPKRLIILIVALAAAGLAGVLAASIWLAPA 31 (276)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 77888 34567799999999998877774
No 12
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=49.36 E-value=21 Score=23.09 Aligned_cols=18 Identities=33% Similarity=0.820 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 034691 6 LILIFLSATLAGFFVIRN 23 (87)
Q Consensus 6 ~ILIFlSAtLAGffv~r~ 23 (87)
.||.|+=+.++|||+-|.
T Consensus 3 iilali~G~~~Gff~ar~ 20 (64)
T PF03672_consen 3 IILALIVGAVIGFFIARK 20 (64)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 577788888999998764
No 13
>PRK03427 cell division protein ZipA; Provisional
Probab=44.92 E-value=22 Score=29.28 Aligned_cols=15 Identities=53% Similarity=0.660 Sum_probs=12.0
Q ss_pred CcchHHHHHHHHHHH
Q 034691 1 MCPLRLILIFLSATL 15 (87)
Q Consensus 1 MCPLR~ILIFlSAtL 15 (87)
|==||+|||.+.|+-
T Consensus 2 MqdLrLiLivvGAIA 16 (333)
T PRK03427 2 MQDLRLILIIVGAIA 16 (333)
T ss_pred chhhhhHHHHHHHHH
Confidence 445999999999863
No 14
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=43.92 E-value=23 Score=26.96 Aligned_cols=26 Identities=19% Similarity=0.254 Sum_probs=20.9
Q ss_pred chHHHHHHHHHHHHHHHHHhhcCCCC
Q 034691 3 PLRLILIFLSATLAGFFVIRNLKSPQ 28 (87)
Q Consensus 3 PLR~ILIFlSAtLAGffv~r~l~s~p 28 (87)
+.|+|++++.+++.++++|-.+-.-|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 28 (423)
T TIGR01843 3 FARLITWLIAGLVVIFFLWAYFAPLD 28 (423)
T ss_pred chhhHHHHHHHHHHHHHHHHhheecc
Confidence 57999999999999999995554433
No 15
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=43.77 E-value=35 Score=28.89 Aligned_cols=24 Identities=13% Similarity=0.151 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCCC
Q 034691 4 LRLILIFLSATLAGFFVIRNLKSP 27 (87)
Q Consensus 4 LR~ILIFlSAtLAGffv~r~l~s~ 27 (87)
.||+||..+|.+-=+.=++-++.+
T Consensus 286 ~RfllVm~aal~iYl~q~g~~r~r 309 (391)
T KOG4583|consen 286 SRFLLVMGAALFIYLHQLGWFRFR 309 (391)
T ss_pred HHHHHHHHHHHHHHHHHhcccccc
Confidence 699999998876433334434433
No 16
>PRK13751 putative mercuric transport protein; Provisional
Probab=42.59 E-value=73 Score=22.57 Aligned_cols=23 Identities=26% Similarity=0.150 Sum_probs=17.3
Q ss_pred chHHHHHHHHHHHHHHHHHhhcC
Q 034691 3 PLRLILIFLSATLAGFFVIRNLK 25 (87)
Q Consensus 3 PLR~ILIFlSAtLAGffv~r~l~ 25 (87)
|.|.++|.++.+.-||--|+..|
T Consensus 49 pyr~~fi~~a~~~l~~a~~~~yr 71 (116)
T PRK13751 49 PYRPIFIGAALVALFFAWRRIYR 71 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 88999988887777766566555
No 17
>PF12270 Cyt_c_ox_IV: Cytochrome c oxidase subunit IV; InterPro: IPR021050 This family of proteins is found in bacteria. Proteins in this family are approximately 140 amino acids in length. This family is the fourth subunit of the cytochrome c oxidase complex. This subunit does not have a catalytic capacity but instead, is required for assembly and/or stability of the complex []. ; GO: 0004129 cytochrome-c oxidase activity, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=41.40 E-value=51 Score=23.97 Aligned_cols=28 Identities=11% Similarity=0.059 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHH--hhcCCCCCcccccc
Q 034691 8 LIFLSATLAGFFVI--RNLKSPQQQLSDDV 35 (87)
Q Consensus 8 LIFlSAtLAGffv~--r~l~s~pe~~~dd~ 35 (87)
...|+.++++||-. |.+.-+||+..|.+
T Consensus 44 s~~l~~mig~yl~~~~rr~~~rPED~~daE 73 (137)
T PF12270_consen 44 SGGLALMIGFYLRFTARRIGPRPEDREDAE 73 (137)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCccccccc
Confidence 34567777777655 33444577633333
No 18
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=39.88 E-value=2.7 Score=22.96 Aligned_cols=20 Identities=30% Similarity=0.684 Sum_probs=16.1
Q ss_pred hhhhhheeccchhHHHHhhc
Q 034691 61 SGFWTFVDMASGKYLWRHLG 80 (87)
Q Consensus 61 sGFWt~VDMASGrYLWr~L~ 80 (87)
+|+=..+|..+|+.+|+.=.
T Consensus 9 ~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 9 DGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp TSEEEEEETTTTSEEEEEES
T ss_pred CCEEEEEECCCCCEEEeeeC
Confidence 56667899999999998543
No 19
>PF10136 SpecificRecomb: Site-specific recombinase; InterPro: IPR011385 This group represents a site-specific recombinase Gcr. Please see the following relevant reference: [].
Probab=39.75 E-value=20 Score=31.62 Aligned_cols=14 Identities=43% Similarity=0.918 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHH
Q 034691 7 ILIFLSATLAGFFV 20 (87)
Q Consensus 7 ILIFlSAtLAGffv 20 (87)
++.|+|+++||||=
T Consensus 478 V~LF~SglIaG~~d 491 (643)
T PF10136_consen 478 VWLFLSGLIAGYFD 491 (643)
T ss_pred HHHHHHHHHHhhHH
Confidence 68899999999974
No 20
>PRK04335 cell division protein ZipA; Provisional
Probab=39.65 E-value=22 Score=28.96 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=19.3
Q ss_pred CcchHHHHHHHHHHHHHHHHHhhcCCC
Q 034691 1 MCPLRLILIFLSATLAGFFVIRNLKSP 27 (87)
Q Consensus 1 MCPLR~ILIFlSAtLAGffv~r~l~s~ 27 (87)
|==||||||.+-|+.=--+++-+||.+
T Consensus 1 MQeLRlvLiivGAlAI~ALL~HGlWts 27 (313)
T PRK04335 1 MQELRFVLIVVGALAIAALLFHGLWTS 27 (313)
T ss_pred CcceeehHHHHHHHHHHHHHHhccccc
Confidence 556999999999875555555566655
No 21
>PF14138 COX16: Cytochrome c oxidase assembly protein COX16
Probab=38.02 E-value=17 Score=23.77 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCC
Q 034691 4 LRLILIFLSATLAGFFVIRNLKS 26 (87)
Q Consensus 4 LR~ILIFlSAtLAGffv~r~l~s 26 (87)
|||=|=|++-|++|.|.++.+..
T Consensus 1 l~~GlPf~~liV~GS~gL~~ftq 23 (80)
T PF14138_consen 1 LRFGLPFLLLIVGGSFGLSEFTQ 23 (80)
T ss_pred CcccccHHHHHHHHHHHHHHHHH
Confidence 46778899999999999987654
No 22
>PF08520 DUF1748: Fungal protein of unknown function (DUF1748); InterPro: IPR013726 This is a family of fungal proteins of unknown function.
Probab=37.69 E-value=24 Score=22.90 Aligned_cols=20 Identities=30% Similarity=0.406 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCC
Q 034691 8 LIFLSATLAGFFVIRNLKSPQQ 29 (87)
Q Consensus 8 LIFlSAtLAGffv~r~l~s~pe 29 (87)
++++|++|||. =||-.-+|.
T Consensus 11 ~vLiS~~LAGi--rR~TGl~~~ 30 (70)
T PF08520_consen 11 AVLISTFLAGI--RRNTGLTPK 30 (70)
T ss_pred HHHHHHHHHHH--hhccCCccC
Confidence 67889999995 344333443
No 23
>PF10833 DUF2572: Protein of unknown function (DUF2572); InterPro: IPR022543 This bacterial family of proteins has no known function.
Probab=37.30 E-value=31 Score=26.84 Aligned_cols=16 Identities=38% Similarity=0.494 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 034691 6 LILIFLSATLAGFFVI 21 (87)
Q Consensus 6 ~ILIFlSAtLAGffv~ 21 (87)
.+||+||++|+-.|+.
T Consensus 7 ~~LillS~~L~l~~L~ 22 (221)
T PF10833_consen 7 TILILLSGLLTLIMLF 22 (221)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 5899999999988875
No 24
>TIGR02833 spore_III_AB stage III sporulation protein AB. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage III sporulation protein AB.
Probab=37.11 E-value=17 Score=26.27 Aligned_cols=23 Identities=35% Similarity=0.531 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCC
Q 034691 6 LILIFLSATLAGFFVIRNLKSPQ 28 (87)
Q Consensus 6 ~ILIFlSAtLAGffv~r~l~s~p 28 (87)
-+||++|++..||-.-+.++.+|
T Consensus 5 a~LIi~s~~~~G~~~a~~~~~R~ 27 (170)
T TIGR02833 5 ALLIVLSSTWIGFLYANRFKERP 27 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 37999999999999999998888
No 25
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=36.90 E-value=56 Score=26.72 Aligned_cols=16 Identities=0% Similarity=-0.020 Sum_probs=10.0
Q ss_pred HHHHHHHhhcCCCCCc
Q 034691 15 LAGFFVIRNLKSPQQQ 30 (87)
Q Consensus 15 LAGffv~r~l~s~pe~ 30 (87)
.+.-=+|+.++.++++
T Consensus 381 ~~~~~~W~~~~~~~~d 396 (406)
T PF04906_consen 381 CVVSHAWKYFRRRDRD 396 (406)
T ss_pred HHhhHHHHHhcCCccc
Confidence 3333348888888743
No 26
>PRK08307 stage III sporulation protein SpoAB; Provisional
Probab=36.63 E-value=18 Score=26.06 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCC
Q 034691 6 LILIFLSATLAGFFVIRNLKSPQ 28 (87)
Q Consensus 6 ~ILIFlSAtLAGffv~r~l~s~p 28 (87)
-+||++|++..||-.-+.++.+|
T Consensus 6 a~LIi~s~~~~G~~~a~~~~~R~ 28 (171)
T PRK08307 6 AVLIIAASTWIGFLYAKRYKERP 28 (171)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 37999999999999999998888
No 27
>PF10066 DUF2304: Uncharacterized conserved protein (DUF2304); InterPro: IPR019277 This entry represents hypothetical archaeal and bacterial proteins that have no known function.
Probab=35.81 E-value=50 Score=22.15 Aligned_cols=26 Identities=31% Similarity=0.528 Sum_probs=18.6
Q ss_pred CcchHHHHHHHHHHHHHHHHHhhcCCC
Q 034691 1 MCPLRLILIFLSATLAGFFVIRNLKSP 27 (87)
Q Consensus 1 MCPLR~ILIFlSAtLAGffv~r~l~s~ 27 (87)
|-++++|+|.++..+.++ +.+.+|.+
T Consensus 1 M~~~qii~i~~~v~~~~~-ii~~vr~~ 26 (115)
T PF10066_consen 1 MTILQIILIIIAVLFLLF-IIRLVRKR 26 (115)
T ss_pred ChHHHHHHHHHHHHHHHH-HHHHHHHh
Confidence 778999999888766555 55556554
No 28
>PF02529 PetG: Cytochrome B6-F complex subunit 5; InterPro: IPR003683 This family consists of cytochrome b6/f complex subunit 5 (PetG). The cytochrome bf complex, found in green plants, eukaryotic algae and cyanobacteria, connects photosystem I to photosystem II in the electron transport chain, functioning as a plastoquinol:plastocyanin/cytochrome c6 oxidoreductase []. The purified complex from the unicellular alga Chlamydomonas reinhardtii contains seven subunits; namely four high molecular weight subunits (cytochrome f, Rieske iron-sulphur protein, cytochrome b6, and subunit IV) and three approximately miniproteins (PetG, PetL, and PetX) []. Stoichiometry measurements are consistent with every subunit being present as two copies per b6/f dimer. The absence of PetG affects either the assembly or stability of the cytochrome bf complex in C. reinhardtii [].; GO: 0009512 cytochrome b6f complex; PDB: 1Q90_G 2ZT9_G 1VF5_G 2D2C_G 2E74_G 2E75_G 2E76_G.
Probab=35.76 E-value=47 Score=19.66 Aligned_cols=16 Identities=44% Similarity=0.787 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 034691 6 LILIFLSATLAGFFVI 21 (87)
Q Consensus 6 ~ILIFlSAtLAGffv~ 21 (87)
+||=.++-|+||.|+-
T Consensus 9 iVlGli~vtl~Glfv~ 24 (37)
T PF02529_consen 9 IVLGLIPVTLAGLFVA 24 (37)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHH
Confidence 5677889999999975
No 29
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=34.17 E-value=19 Score=25.64 Aligned_cols=23 Identities=35% Similarity=0.470 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCC
Q 034691 6 LILIFLSATLAGFFVIRNLKSPQ 28 (87)
Q Consensus 6 ~ILIFlSAtLAGffv~r~l~s~p 28 (87)
.|||++|++..||-.-+.++.+|
T Consensus 5 ~~LIi~a~~~~G~~~a~~~~~R~ 27 (170)
T PF09548_consen 5 AILIIAASSGIGFLYARRLKRRV 27 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999998888887
No 30
>PF09615 Cas_Csy3: CRISPR-associated protein (Cas_Csy3); InterPro: IPR013399 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.
Probab=33.75 E-value=7.6 Score=31.81 Aligned_cols=16 Identities=31% Similarity=0.711 Sum_probs=13.2
Q ss_pred hheeccchhHHHHhhc
Q 034691 65 TFVDMASGKYLWRHLG 80 (87)
Q Consensus 65 t~VDMASGrYLWr~L~ 80 (87)
-..-.|.||.||||-+
T Consensus 130 Ya~NIanGrwLWRNR~ 145 (331)
T PF09615_consen 130 YAKNIANGRWLWRNRV 145 (331)
T ss_pred HHHHhhcCeeEeeccc
Confidence 3567899999999974
No 31
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=32.19 E-value=38 Score=25.98 Aligned_cols=23 Identities=17% Similarity=0.145 Sum_probs=18.7
Q ss_pred chHHHHHHHHHHHHHHHHHhhcC
Q 034691 3 PLRLILIFLSATLAGFFVIRNLK 25 (87)
Q Consensus 3 PLR~ILIFlSAtLAGffv~r~l~ 25 (87)
++.+++|++.-++++|+.|.+-.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~ 35 (346)
T PRK10476 13 LPALAIVALAIVALVFVIWRTDS 35 (346)
T ss_pred chhHHHHHHHHHHHHHHheccCc
Confidence 46788999999999999996533
No 32
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=30.44 E-value=52 Score=18.33 Aligned_cols=13 Identities=38% Similarity=0.749 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHH
Q 034691 6 LILIFLSATLAGF 18 (87)
Q Consensus 6 ~ILIFlSAtLAGf 18 (87)
++++|+|++++-|
T Consensus 19 l~~~~~tG~~~~f 31 (37)
T PF13706_consen 19 LFVIFLTGAVMVF 31 (37)
T ss_pred HHHHHHHhHHHHH
Confidence 5677888877765
No 33
>PF13257 DUF4048: Domain of unknown function (DUF4048)
Probab=29.66 E-value=29 Score=27.51 Aligned_cols=13 Identities=38% Similarity=0.976 Sum_probs=9.9
Q ss_pred HHHHhhhhhhhee
Q 034691 56 RLALESGFWTFVD 68 (87)
Q Consensus 56 ~~~i~sGFWt~VD 68 (87)
..-++.|||+||.
T Consensus 90 AeDfK~GLWTFvE 102 (253)
T PF13257_consen 90 AEDFKEGLWTFVE 102 (253)
T ss_pred HHHHHHHHHHHHH
Confidence 3347889999984
No 34
>TIGR02566 cas_Csy3 CRISPR-associated protein, Csy3 family. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. This family is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.
Probab=29.04 E-value=10 Score=31.38 Aligned_cols=17 Identities=29% Similarity=0.673 Sum_probs=13.4
Q ss_pred hheeccchhHHHHhhcc
Q 034691 65 TFVDMASGKYLWRHLGS 81 (87)
Q Consensus 65 t~VDMASGrYLWr~L~~ 81 (87)
-..-.|.||.||||=+.
T Consensus 134 Ya~NianGrwLWRNr~g 150 (341)
T TIGR02566 134 YAENIANGRWLWRNRVG 150 (341)
T ss_pred HHHHhhcCeeEeecccc
Confidence 45678999999999543
No 35
>PF07543 PGA2: Protein trafficking PGA2; InterPro: IPR011431 A Saccharomyces cerevisiae (Baker's yeast) member of this family (PGA2, P53903 from SWISSPROT) is a single pass membrane protein which has been implicated in protein trafficking [, ].
Probab=28.90 E-value=33 Score=24.67 Aligned_cols=14 Identities=29% Similarity=0.978 Sum_probs=10.5
Q ss_pred hHHHHHHHHHHHHHHHHHh
Q 034691 4 LRLILIFLSATLAGFFVIR 22 (87)
Q Consensus 4 LR~ILIFlSAtLAGffv~r 22 (87)
+|+|+ ++.||+++|
T Consensus 18 iRLVi-----IVggYiLlR 31 (140)
T PF07543_consen 18 IRLVI-----IVGGYILLR 31 (140)
T ss_pred hhhhh-----hhhHHHHHH
Confidence 46665 478999999
No 36
>CHL00008 petG cytochrome b6/f complex subunit V
Probab=28.59 E-value=62 Score=19.15 Aligned_cols=17 Identities=41% Similarity=0.716 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHh
Q 034691 6 LILIFLSATLAGFFVIR 22 (87)
Q Consensus 6 ~ILIFlSAtLAGffv~r 22 (87)
++|=++..||||.||--
T Consensus 9 iVLGlipvTl~GlfvaA 25 (37)
T CHL00008 9 IVLGLIPITLAGLFVTA 25 (37)
T ss_pred HHHHhHHHHHHHHHHHH
Confidence 46667788999999853
No 37
>cd04235 AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes both the ATP-phosphorylation of carbamate and carbamoyl phosphate (CP) utilization with the production of ATP from ADP and CP. Both CK (this CD) and nonhomologous CP synthetase synthesize carbamoyl phosphate, an essential precursor of arginine and pyrimidine bases, in the presence of ATP, bicarbonate, and ammonia. CK is a homodimer of 33 kDa subunits and is a member of the Amino Acid Kinase Superfamily (AAK).
Probab=28.03 E-value=17 Score=29.05 Aligned_cols=33 Identities=24% Similarity=0.308 Sum_probs=24.0
Q ss_pred chhHHHHHhhhhhhheeccchhHHHHhhccCCCCC
Q 034691 52 CSKVRLALESGFWTFVDMASGKYLWRHLGSSSKRS 86 (87)
Q Consensus 52 ~skv~~~i~sGFWt~VDMASGrYLWr~L~~ss~~~ 86 (87)
+.+.+...+.-=|+++.-+ ||| ||..|.||++.
T Consensus 134 ~~~a~~~~~~~g~~~~~d~-~~g-~rrvV~SP~P~ 166 (308)
T cd04235 134 EEEAEELAAEKGWTFKEDA-GRG-YRRVVPSPKPK 166 (308)
T ss_pred HHHHHHHHHHcCCEEEEeC-CCC-ceeeeCCCCCc
Confidence 3445555555458999887 888 99999998863
No 38
>TIGR02205 septum_zipA cell division protein ZipA. This model represents the full length of bacterial cell division protein ZipA. The N-terminal hydrophobic stretch is an uncleaved signal-anchor sequence. This is followed by an unconserved, variable length, low complexity region, and then a conserved C-terminal region of about 140 amino acids (see pfam04354) that interacts with the tubulin-like cell division protein FtsZ.
Probab=27.98 E-value=39 Score=26.91 Aligned_cols=12 Identities=42% Similarity=0.650 Sum_probs=10.1
Q ss_pred hHHHHHHHHHHH
Q 034691 4 LRLILIFLSATL 15 (87)
Q Consensus 4 LR~ILIFlSAtL 15 (87)
||+|||.+-|+.
T Consensus 2 Lr~iLIIvGaia 13 (284)
T TIGR02205 2 LRIILIIVGILA 13 (284)
T ss_pred ceehHHHHHHHH
Confidence 899999998764
No 39
>PRK00665 petG cytochrome b6-f complex subunit PetG; Reviewed
Probab=26.68 E-value=71 Score=18.90 Aligned_cols=17 Identities=41% Similarity=0.729 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHh
Q 034691 6 LILIFLSATLAGFFVIR 22 (87)
Q Consensus 6 ~ILIFlSAtLAGffv~r 22 (87)
++|=++.-||||.||--
T Consensus 9 iVLGlipiTl~GlfvaA 25 (37)
T PRK00665 9 IVLGLIPVTLAGLFVAA 25 (37)
T ss_pred HHHHhHHHHHHHHHHHH
Confidence 45667778999999853
No 40
>PF06364 DUF1068: Protein of unknown function (DUF1068); InterPro: IPR010471 This family consists of several hypothetical plant proteins from Arabidopsis thaliana and Oryza sativa. The function of this family is unknown.
Probab=26.21 E-value=50 Score=25.27 Aligned_cols=18 Identities=44% Similarity=0.816 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 034691 4 LRLILIFLSATLAGFFVI 21 (87)
Q Consensus 4 LR~ILIFlSAtLAGffv~ 21 (87)
||++|+.|.-.+|||.+-
T Consensus 8 lr~~l~llal~~a~yivG 25 (176)
T PF06364_consen 8 LRVVLVLLALCLAGYIVG 25 (176)
T ss_pred HHHHHHHHHHHHHhheeC
Confidence 799999999999999863
No 41
>COG4389 Site-specific recombinase [DNA replication, recombination, and repair]
Probab=26.15 E-value=45 Score=29.80 Aligned_cols=14 Identities=43% Similarity=0.842 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHH
Q 034691 7 ILIFLSATLAGFFV 20 (87)
Q Consensus 7 ILIFlSAtLAGffv 20 (87)
+++|+|+++||||=
T Consensus 502 ~wLf~SgiiaG~fD 515 (677)
T COG4389 502 LWLFCSGIIAGFFD 515 (677)
T ss_pred HHHHHHHHHHHhhc
Confidence 57899999999984
No 42
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=25.92 E-value=89 Score=20.99 Aligned_cols=24 Identities=13% Similarity=0.328 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCc
Q 034691 7 ILIFLSATLAGFFVIRNLKSPQQQ 30 (87)
Q Consensus 7 ILIFlSAtLAGffv~r~l~s~pe~ 30 (87)
+++.+...+||+++-.-++..||.
T Consensus 6 l~Lc~~SF~~G~lft~R~W~~pe~ 29 (95)
T PF13334_consen 6 LLLCIASFCAGMLFTNRMWTVPES 29 (95)
T ss_pred HHHHHHHHHHHHHHhcccccCCcc
Confidence 344567789999888888888853
No 43
>PF01222 ERG4_ERG24: Ergosterol biosynthesis ERG4/ERG24 family; InterPro: IPR001171 The two fungal enzymes, C-14 sterol reductase (gene ERG24 in budding yeast and erg3 in Neurospora crassa) and C-24(28) sterol reductase (gene ERG4 in budding yeast and sts1 in fission yeast), are involved in ergosterol biosynthesis. They act by reducing double bonds in precursors of ergosterol []. These proteins are highly hydrophobic and seem to contain seven or eight transmembrane regions. Chicken lamin B receptor that is thought to anchor the lamina to the inner nuclear membrane belongs to this family.; GO: 0016020 membrane
Probab=25.69 E-value=43 Score=27.79 Aligned_cols=57 Identities=19% Similarity=0.348 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCccccccccCCCCCCCCCCCCCCchhHHHHHhhhhhhhe
Q 034691 6 LILIFLSATLAGFFVIRNLKSPQQQLSDDVLLDADDSTDTTKNQSPCSKVRLALESGFWTFV 67 (87)
Q Consensus 6 ~ILIFlSAtLAGffv~r~l~s~pe~~~dd~~~~~~~s~s~~~~~~~~skv~~~i~sGFWt~V 67 (87)
.++|++ .-++||.+.|..++|-+..--++. ++.-... ...+.++=++-+-||+|.++
T Consensus 304 ~~~i~~-l~~~gy~i~r~sn~QK~~FR~~p~-~p~~~~~---~~~~t~~G~~LL~SGwWg~~ 360 (432)
T PF01222_consen 304 AAAILA-LGLVGYYIFRGSNSQKNRFRRNPK-DPKVIHL---KYIPTKRGSKLLVSGWWGIA 360 (432)
T ss_pred HHHHHH-HHHHHHHHHHHhchhHHHhcCCCC-CCccccc---ceeecCCCCeEEEcChhHhh
Confidence 455555 347899999999988543221221 1111111 11111122346889999864
No 44
>PRK01844 hypothetical protein; Provisional
Probab=24.82 E-value=90 Score=20.68 Aligned_cols=17 Identities=24% Similarity=0.696 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHhh
Q 034691 7 ILIFLSATLAGFFVIRN 23 (87)
Q Consensus 7 ILIFlSAtLAGffv~r~ 23 (87)
|+-++=+.+.|||.-|.
T Consensus 11 I~~li~G~~~Gff~ark 27 (72)
T PRK01844 11 VVALVAGVALGFFIARK 27 (72)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44466677788888654
No 45
>PF12588 PSDC: Phophatidylserine decarboxylase ; InterPro: IPR022237 This domain family is found in bacteria and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF02666 from PFAM. Phosphatidylserine decarboxylase (PSD) is an important enzyme in the synthesis of phosphatidylethanolamine in both prokaryotes and eukaryotes.
Probab=24.67 E-value=42 Score=24.23 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=19.6
Q ss_pred cchHHHHHHHHHHHHHHHHHh
Q 034691 2 CPLRLILIFLSATLAGFFVIR 22 (87)
Q Consensus 2 CPLR~ILIFlSAtLAGffv~r 22 (87)
||+=-||.-..+|-|||.+.+
T Consensus 74 ~P~naiLdwpM~T~sG~a~F~ 94 (141)
T PF12588_consen 74 FPMNAILDWPMGTPSGYAFFL 94 (141)
T ss_pred cChHHHHHhhccChHHHHHHc
Confidence 899999999999999999874
No 46
>PRK00523 hypothetical protein; Provisional
Probab=24.62 E-value=91 Score=20.65 Aligned_cols=17 Identities=24% Similarity=0.657 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHhh
Q 034691 7 ILIFLSATLAGFFVIRN 23 (87)
Q Consensus 7 ILIFlSAtLAGffv~r~ 23 (87)
|+.++=+.+.|||.-|.
T Consensus 12 i~~li~G~~~Gffiark 28 (72)
T PRK00523 12 IPLLIVGGIIGYFVSKK 28 (72)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45567777888888654
No 47
>PF13808 DDE_Tnp_1_assoc: DDE_Tnp_1-associated
Probab=22.73 E-value=66 Score=20.70 Aligned_cols=17 Identities=41% Similarity=0.471 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHh
Q 034691 6 LILIFLSATLAGFFVIR 22 (87)
Q Consensus 6 ~ILIFlSAtLAGffv~r 22 (87)
+++|.+.|+|+|.==|+
T Consensus 24 iL~i~~~a~l~G~~~~~ 40 (90)
T PF13808_consen 24 ILLIALCAVLCGADSWR 40 (90)
T ss_pred HHHHHHHHHHHccccHH
Confidence 45788899999965443
No 48
>PF10161 DDDD: Putative mitochondrial precursor protein; InterPro: IPR018782 This entry represents a family of small conserved proteins found from nematodes to humans. The C-terminal region is rich in asparagine. These proteins have been putatively designated as mitochondrial precursor proteins but this has not been confirmed.
Probab=22.53 E-value=20 Score=24.14 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCC
Q 034691 4 LRLILIFLSATLAGFFVIRNLKS 26 (87)
Q Consensus 4 LR~ILIFlSAtLAGffv~r~l~s 26 (87)
+|++.+.+..++.|.++-++.-+
T Consensus 40 ~~v~~vvip~l~~Ga~isk~~A~ 62 (79)
T PF10161_consen 40 LRVLAVVIPGLYLGATISKNGAQ 62 (79)
T ss_pred heeeeeeccHHHHHHHHHHHHHH
Confidence 56777778888888888877654
No 49
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=22.35 E-value=1.1e+02 Score=17.65 Aligned_cols=19 Identities=5% Similarity=0.093 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 034691 6 LILIFLSATLAGFFVIRNL 24 (87)
Q Consensus 6 ~ILIFlSAtLAGffv~r~l 24 (87)
+.+|++-++..|+.+|--.
T Consensus 13 ~~~v~~~~~F~gi~~w~~~ 31 (49)
T PF05545_consen 13 IGTVLFFVFFIGIVIWAYR 31 (49)
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 4577888888898888543
No 50
>PF11808 DUF3329: Domain of unknown function (DUF3329); InterPro: IPR021766 This family of proteins are functionally uncharacterised. This family is only found in bacteria. ; GO: 0004673 protein histidine kinase activity
Probab=22.16 E-value=1e+02 Score=19.99 Aligned_cols=12 Identities=50% Similarity=0.955 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 034691 6 LILIFLSATLAG 17 (87)
Q Consensus 6 ~ILIFlSAtLAG 17 (87)
++++++-|++.|
T Consensus 12 l~~~~l~~~lvG 23 (90)
T PF11808_consen 12 LLLLLLAAALVG 23 (90)
T ss_pred HHHHHHHHHHHH
Confidence 334434333333
No 51
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=21.92 E-value=2.2e+02 Score=19.49 Aligned_cols=26 Identities=23% Similarity=0.211 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCc
Q 034691 5 RLILIFLSATLAGFFVIRNLKSPQQQ 30 (87)
Q Consensus 5 R~ILIFlSAtLAGffv~r~l~s~pe~ 30 (87)
+-++-.+.+..=-|+.++.+++.++.
T Consensus 59 ~~~l~~~G~~~L~~lg~~~~~~~~~~ 84 (191)
T PF01810_consen 59 FMILKLLGALYLLYLGYKLLRSKFSS 84 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCc
Confidence 44556666777778889999998765
No 52
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=21.59 E-value=1.3e+02 Score=17.41 Aligned_cols=20 Identities=30% Similarity=0.303 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHhhcC
Q 034691 6 LILIFLSATLAGFFVIRNLK 25 (87)
Q Consensus 6 ~ILIFlSAtLAGffv~r~l~ 25 (87)
+|.+++..+.+.|-++|.+|
T Consensus 36 ~~g~llG~~~g~~~~~~~~k 55 (55)
T PF09527_consen 36 LIGLLLGIAAGFYNVYRLVK 55 (55)
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 35566666677777776554
No 53
>KOG3393 consensus Predicted membrane protein [Function unknown]
Probab=21.59 E-value=32 Score=25.84 Aligned_cols=17 Identities=24% Similarity=0.571 Sum_probs=13.3
Q ss_pred HHHHHhhhhhhheeccc
Q 034691 55 VRLALESGFWTFVDMAS 71 (87)
Q Consensus 55 v~~~i~sGFWt~VDMAS 71 (87)
....--.|+|.+||.|.
T Consensus 26 aG~LFf~GwWi~iDAa~ 42 (157)
T KOG3393|consen 26 AGALFFTGWWIMIDAAL 42 (157)
T ss_pred HHHHHHHHHHHhhhhhh
Confidence 34456799999999984
No 54
>PF14851 FAM176: FAM176 family
Probab=21.49 E-value=99 Score=22.76 Aligned_cols=18 Identities=39% Similarity=0.718 Sum_probs=15.8
Q ss_pred chHHHHHHHHHHHHHHHH
Q 034691 3 PLRLILIFLSATLAGFFV 20 (87)
Q Consensus 3 PLR~ILIFlSAtLAGffv 20 (87)
|=||-|.|+|+|-+|.++
T Consensus 19 PE~~aLYFv~gVC~GLlL 36 (153)
T PF14851_consen 19 PERFALYFVSGVCAGLLL 36 (153)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 668999999999999764
No 55
>PF14946 DUF4501: Domain of unknown function (DUF4501)
Probab=20.37 E-value=87 Score=24.06 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCc
Q 034691 6 LILIFLSATLAGFFVIRNLKSPQQQ 30 (87)
Q Consensus 6 ~ILIFlSAtLAGffv~r~l~s~pe~ 30 (87)
||-.+|.--+|+||.++-.+.-|++
T Consensus 99 fIS~~LilSvA~FFYLKrs~kLP~v 123 (180)
T PF14946_consen 99 FISLGLILSVASFFYLKRSSKLPHV 123 (180)
T ss_pred HHHHHHHHHHhhheeecccccCCcc
Confidence 4555566678999999877776865
Done!