Query 034691
Match_columns 87
No_of_seqs 32 out of 34
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 08:40:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034691.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034691hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jb0_M Photosystem 1 reaction 70.9 4 0.00014 22.4 2.7 18 6-23 8-25 (31)
2 1q90_G Cytochrome B6F complex 35.2 31 0.001 19.6 2.5 16 6-21 9-24 (37)
3 2zxe_B Na+,K+-ATPase beta subu 26.8 40 0.0014 25.9 2.6 12 11-22 43-54 (305)
4 1vf5_G Protein PET G; photosyn 22.8 55 0.0019 18.5 2.1 17 6-22 9-25 (37)
5 2zt9_E Cytochrome B6-F complex 21.2 1.1E+02 0.0037 16.6 3.0 19 7-25 11-29 (31)
6 3kzf_A Carbamate kinase; argin 19.2 14 0.00049 28.6 -1.2 23 60-85 150-172 (317)
7 2gag_C Heterotetrameric sarcos 16.9 40 0.0014 23.6 0.8 23 60-82 170-192 (210)
8 1x31_C Sarcosine oxidase gamma 15.2 44 0.0015 23.3 0.6 23 60-82 168-190 (206)
9 2od8_B DNA ligase I, mitochond 14.4 96 0.0033 16.2 1.7 15 13-29 8-22 (26)
10 1v54_D Cytochrome C oxidase su 13.4 1.5E+02 0.0051 20.7 2.9 21 6-26 84-104 (147)
No 1
>1jb0_M Photosystem 1 reaction centre subunit XII; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.19.1 PDB: 3pcq_M*
Probab=70.91 E-value=4 Score=22.37 Aligned_cols=18 Identities=17% Similarity=0.277 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 034691 6 LILIFLSATLAGFFVIRN 23 (87)
Q Consensus 6 ~ILIFlSAtLAGffv~r~ 23 (87)
++..++.|.++|++++|-
T Consensus 8 i~iAL~~Al~~~iLA~rL 25 (31)
T 1jb0_M 8 VYVALVIALLPAVLAFRL 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 567788999999999973
No 2
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=35.21 E-value=31 Score=19.61 Aligned_cols=16 Identities=38% Similarity=0.746 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 034691 6 LILIFLSATLAGFFVI 21 (87)
Q Consensus 6 ~ILIFlSAtLAGffv~ 21 (87)
+||=.+..||||.|+-
T Consensus 9 IVlGlipvtlaGLfv~ 24 (37)
T 1q90_G 9 IVLGLVPVTIAGLFVT 24 (37)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHH
Confidence 5677788999999985
No 3
>2zxe_B Na+,K+-ATPase beta subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_B* 3b8e_B*
Probab=26.81 E-value=40 Score=25.90 Aligned_cols=12 Identities=33% Similarity=0.542 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHh
Q 034691 11 LSATLAGFFVIR 22 (87)
Q Consensus 11 lSAtLAGffv~r 22 (87)
|-++|||+|+..
T Consensus 43 FY~~La~lF~~~ 54 (305)
T 2zxe_B 43 FYGCLAGIFIGT 54 (305)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 678899988754
No 4
>1vf5_G Protein PET G; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.26.1 PDB: 2d2c_G* 2e74_G* 2e75_G* 2e76_G* 2zt9_G*
Probab=22.79 E-value=55 Score=18.52 Aligned_cols=17 Identities=41% Similarity=0.591 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHh
Q 034691 6 LILIFLSATLAGFFVIR 22 (87)
Q Consensus 6 ~ILIFlSAtLAGffv~r 22 (87)
+||=.+.-||||.|+--
T Consensus 9 IVlGlipvtl~GLfv~A 25 (37)
T 1vf5_G 9 LVLGLVFATLGGLFYAA 25 (37)
T ss_dssp CHHHHHHHHHHHHTHHH
T ss_pred HHHhhHHHHHHHHHHHH
Confidence 35667888999999863
No 5
>2zt9_E Cytochrome B6-F complex subunit 6; photosynthesis, heme B,2Fe-2S protei cytochrome F; HET: HEM UMQ CLA OPC SQD BCR; 3.00A {Nostoc SP}
Probab=21.23 E-value=1.1e+02 Score=16.57 Aligned_cols=19 Identities=21% Similarity=0.375 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHhhcC
Q 034691 7 ILIFLSATLAGFFVIRNLK 25 (87)
Q Consensus 7 ILIFlSAtLAGffv~r~l~ 25 (87)
+.+|+.=.+.-||-+|..+
T Consensus 11 l~~~~~iA~GL~fGLrsiK 29 (31)
T 2zt9_E 11 LALFTGIAAGLLFGLRSAK 29 (31)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3444444555567776653
No 6
>3kzf_A Carbamate kinase; arginine dihydrolase pathway, giardia LAMB target, transferase; 3.00A {Giardia lamblia atcc 50803}
Probab=19.19 E-value=14 Score=28.58 Aligned_cols=23 Identities=22% Similarity=0.477 Sum_probs=9.7
Q ss_pred hhhhhhheeccchhHHHHhhccCCCC
Q 034691 60 ESGFWTFVDMASGKYLWRHLGSSSKR 85 (87)
Q Consensus 60 ~sGFWt~VDMASGrYLWr~L~~ss~~ 85 (87)
+.| |+|+. -+||| ||..|.|+++
T Consensus 150 ~~~-~~~~e-d~grg-~RrvV~sP~P 172 (317)
T 3kzf_A 150 NPG-KILRE-DAGRG-WRVVVPSPRP 172 (317)
T ss_dssp --------------C-CCCEECCCCE
T ss_pred ccC-CeEee-cCCCC-eeeecCCCCC
Confidence 445 88876 67998 9999999875
No 7
>2gag_C Heterotetrameric sarcosine oxidase gamma-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_C*
Probab=16.93 E-value=40 Score=23.63 Aligned_cols=23 Identities=9% Similarity=-0.013 Sum_probs=20.8
Q ss_pred hhhhhhheeccchhHHHHhhccC
Q 034691 60 ESGFWTFVDMASGKYLWRHLGSS 82 (87)
Q Consensus 60 ~sGFWt~VDMASGrYLWr~L~~s 82 (87)
|.||=.+|.-..+.|||+.|...
T Consensus 170 EdGfEI~v~~~~A~~lw~~Ll~a 192 (210)
T 2gag_C 170 EQAWRIMPRASFTEHTVHWLVDA 192 (210)
T ss_dssp TTEEEEEEBGGGHHHHHHHHHHH
T ss_pred CCEEEEEEEHHHHHHHHHHHHHH
Confidence 78999999999999999999653
No 8
>1x31_C Sarcosine oxidase gamma subunit; heterotetrameric sarcosine oxidase, flavoenzyme, oxidoreduct; HET: FAD NAD FMN; 2.15A {Corynebacterium SP} PDB: 1vrq_C* 3ad7_C* 3ad8_C* 3ad9_C* 3ada_C*
Probab=15.19 E-value=44 Score=23.27 Aligned_cols=23 Identities=9% Similarity=-0.026 Sum_probs=21.1
Q ss_pred hhhhhhheeccchhHHHHhhccC
Q 034691 60 ESGFWTFVDMASGKYLWRHLGSS 82 (87)
Q Consensus 60 ~sGFWt~VDMASGrYLWr~L~~s 82 (87)
|.||=.+|.-..+.|||+.|...
T Consensus 168 EdGfEI~v~~~~A~~lw~~L~~a 190 (206)
T 1x31_C 168 EQSWRILPRASFTEHTVHWLIDA 190 (206)
T ss_dssp TTEEEEECBGGGHHHHHHHHHHH
T ss_pred CCeEEEEEEHHHHHHHHHHHHHH
Confidence 89999999999999999999753
No 9
>2od8_B DNA ligase I, mitochondrial precursor; homotrimer, PCNA-peptide complex, PCNA, protein binding; HET: DNA; 2.80A {Saccharomyces cerevisiae}
Probab=14.36 E-value=96 Score=16.16 Aligned_cols=15 Identities=47% Similarity=0.636 Sum_probs=11.7
Q ss_pred HHHHHHHHHhhcCCCCC
Q 034691 13 ATLAGFFVIRNLKSPQQ 29 (87)
Q Consensus 13 AtLAGffv~r~l~s~pe 29 (87)
||||-||-- +++.|.
T Consensus 8 atlarffts--mknkpt 22 (26)
T 2od8_B 8 ATLARFFTS--MKNKPT 22 (26)
T ss_pred hHHHHHHHH--hccCCC
Confidence 799999865 777774
No 10
>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D* 2ein_D* 2occ_D* 2ybb_O* 2zxw_D* 3abk_D* 3abl_D* 3abm_D* 3ag1_D* 3ag2_D* ...
Probab=13.37 E-value=1.5e+02 Score=20.71 Aligned_cols=21 Identities=10% Similarity=0.056 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHhhcCC
Q 034691 6 LILIFLSATLAGFFVIRNLKS 26 (87)
Q Consensus 6 ~ILIFlSAtLAGffv~r~l~s 26 (87)
.+++|++++++-|+..|..-.
T Consensus 84 ~v~~~i~~s~~~f~~~r~~v~ 104 (147)
T 1v54_D 84 AAMFFIGFTALLLIWEKHYVY 104 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHcc
Confidence 478899999999998998754
Done!