Query 034691
Match_columns 87
No_of_seqs 32 out of 34
Neff 3.3
Searched_HMMs 13730
Date Mon Mar 25 08:41:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034691.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034691hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xmec1 f.23.9.1 (C:2-34) Bact 40.2 11 0.00081 19.5 2.5 15 6-20 17-31 (33)
2 d1kqfb2 f.23.22.1 (B:246-290) 36.9 10 0.00074 20.8 2.1 27 7-35 17-43 (45)
3 d1q90g_ f.23.26.1 (G:) PetG su 34.4 16 0.0012 18.6 2.5 16 6-21 9-24 (30)
4 d2e74g1 f.23.26.1 (G:9-35) Pet 25.0 28 0.002 17.2 2.3 14 7-20 2-15 (27)
5 d2essa1 d.38.1.8 (A:1-149) Acy 19.2 8.1 0.00059 23.3 -0.7 14 61-74 110-123 (149)
6 d1sfka_ a.190.1.1 (A:) Flavivi 15.8 29 0.0021 20.7 1.3 9 3-11 19-27 (73)
7 d1wiva_ a.5.2.1 (A:) Ubiquitin 14.2 78 0.0056 17.8 3.0 16 48-63 26-41 (73)
8 d2jdqd1 d.361.1.1 (D:688-756) 14.0 3.9 0.00028 24.5 -3.1 10 12-21 1-10 (69)
9 d2jv3a_ a.60.1.1 (A:) Ets-1 tr 14.0 29 0.0021 21.4 1.1 29 52-80 74-102 (110)
10 d1v54l_ f.23.6.1 (L:) Mitochon 13.2 82 0.0059 17.1 2.7 17 6-22 24-40 (46)
No 1
>d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]}
Probab=40.25 E-value=11 Score=19.54 Aligned_cols=15 Identities=40% Similarity=0.616 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHH
Q 034691 6 LILIFLSATLAGFFV 20 (87)
Q Consensus 6 ~ILIFlSAtLAGffv 20 (87)
.||||-=+++|-||+
T Consensus 17 ~ilvfw~gv~avf~a 31 (33)
T d1xmec1 17 TILVFWLGVYAVFFA 31 (33)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 589999999999986
No 2
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=36.94 E-value=10 Score=20.84 Aligned_cols=27 Identities=15% Similarity=0.076 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcccccc
Q 034691 7 ILIFLSATLAGFFVIRNLKSPQQQLSDDV 35 (87)
Q Consensus 7 ILIFlSAtLAGffv~r~l~s~pe~~~dd~ 35 (87)
.+.|..+.+||+|=. ++--|+.++||+
T Consensus 17 ~~~~~~~~~~~~fHY--v~vGPn~v~ee~ 43 (45)
T d1kqfb2 17 AAGFIATFAGLIFHY--IGIGPNKEVDDD 43 (45)
T ss_dssp HHHHHHHHHHHHHHH--HHHCCBCSCSST
T ss_pred HHHHHHHHHHHHHhh--heeCCCcccccc
Confidence 456778889999877 555676544443
No 3
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=34.41 E-value=16 Score=18.61 Aligned_cols=16 Identities=38% Similarity=0.746 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 034691 6 LILIFLSATLAGFFVI 21 (87)
Q Consensus 6 ~ILIFlSAtLAGffv~ 21 (87)
++|=.+.-||||.||-
T Consensus 9 ivlGlipiTl~Glfv~ 24 (30)
T d1q90g_ 9 IVLGLVPVTIAGLFVT 24 (30)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHH
Confidence 4666788899999974
No 4
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=25.00 E-value=28 Score=17.20 Aligned_cols=14 Identities=43% Similarity=0.655 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHH
Q 034691 7 ILIFLSATLAGFFV 20 (87)
Q Consensus 7 ILIFlSAtLAGffv 20 (87)
+|=.+=+||||.|.
T Consensus 2 vlgli~~tl~glf~ 15 (27)
T d2e74g1 2 VLGLVFATLGGLFY 15 (27)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHH
Confidence 44455689999764
No 5
>d2essa1 d.38.1.8 (A:1-149) Acyl-ACP thioesterase {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=19.20 E-value=8.1 Score=23.35 Aligned_cols=14 Identities=14% Similarity=0.598 Sum_probs=11.9
Q ss_pred hhhhhheeccchhH
Q 034691 61 SGFWTFVDMASGKY 74 (87)
Q Consensus 61 sGFWt~VDMASGrY 74 (87)
.--|++||+.+||.
T Consensus 110 ~~~~v~id~~t~kp 123 (149)
T d2essa1 110 RSVWAMINLNTRKP 123 (149)
T ss_dssp EEEEEEEETTTCCB
T ss_pred EEEEEEEECCCCCc
Confidence 45899999999985
No 6
>d1sfka_ a.190.1.1 (A:) Flavivirus capsid protein C {Kunjin virus [TaxId: 11077]}
Probab=15.80 E-value=29 Score=20.71 Aligned_cols=9 Identities=44% Similarity=0.936 Sum_probs=7.1
Q ss_pred chHHHHHHH
Q 034691 3 PLRLILIFL 11 (87)
Q Consensus 3 PLR~ILIFl 11 (87)
|+|+||-++
T Consensus 19 P~R~vLA~l 27 (73)
T d1sfka_ 19 PTRFVLALL 27 (73)
T ss_dssp CHHHHHHHH
T ss_pred cHHHHHHHH
Confidence 899998654
No 7
>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=14.18 E-value=78 Score=17.78 Aligned_cols=16 Identities=31% Similarity=0.310 Sum_probs=12.3
Q ss_pred CCCCchhHHHHHhhhh
Q 034691 48 NQSPCSKVRLALESGF 63 (87)
Q Consensus 48 ~~~~~skv~~~i~sGF 63 (87)
..+....+...++.||
T Consensus 26 ~~~d~~~i~~L~~MGF 41 (73)
T d1wiva_ 26 SDIDQSSVDTLLSFGF 41 (73)
T ss_dssp CSSCHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHhcCC
Confidence 4455778888899997
No 8
>d2jdqd1 d.361.1.1 (D:688-756) Polymerase basic protein 2, BP2 {Influenza A virus [TaxId: 11320]}
Probab=14.01 E-value=3.9 Score=24.51 Aligned_cols=10 Identities=50% Similarity=0.982 Sum_probs=8.3
Q ss_pred HHHHHHHHHH
Q 034691 12 SATLAGFFVI 21 (87)
Q Consensus 12 SAtLAGffv~ 21 (87)
||+|+||+++
T Consensus 1 sAVL~GFLil 10 (69)
T d2jdqd1 1 SAVLRGFLIL 10 (69)
T ss_dssp CTTGGGEEEE
T ss_pred Cchhheeeee
Confidence 6889998876
No 9
>d2jv3a_ a.60.1.1 (A:) Ets-1 transcription factor pointed domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=14.01 E-value=29 Score=21.38 Aligned_cols=29 Identities=21% Similarity=0.305 Sum_probs=24.0
Q ss_pred chhHHHHHhhhhhhheeccchhHHHHhhc
Q 034691 52 CSKVRLALESGFWTFVDMASGKYLWRHLG 80 (87)
Q Consensus 52 ~skv~~~i~sGFWt~VDMASGrYLWr~L~ 80 (87)
....-.+=+.+|+..+--.+|..||.||-
T Consensus 74 G~~LC~Ls~edF~~r~p~~~GdiL~~hL~ 102 (110)
T d2jv3a_ 74 GAALCALGKECFLELAPDFVGDILWEHLE 102 (110)
T ss_dssp HHHHHHTHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHcCCccHHHHHHHHH
Confidence 44567778999999887778999999984
No 10
>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}
Probab=13.21 E-value=82 Score=17.11 Aligned_cols=17 Identities=41% Similarity=0.682 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHh
Q 034691 6 LILIFLSATLAGFFVIR 22 (87)
Q Consensus 6 ~ILIFlSAtLAGffv~r 22 (87)
+++-|=|+.-|-|+++|
T Consensus 24 m~~~fGsgfa~PF~ivR 40 (46)
T d1v54l_ 24 MTLFFGSGFAAPFFIVR 40 (46)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccchHHHHH
Done!