Query 034694
Match_columns 87
No_of_seqs 42 out of 44
Neff 2.0
Searched_HMMs 13730
Date Mon Mar 25 08:44:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034694.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034694hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ezla_ a.4.1.2 (A:) Ibeta sub 62.7 1.9 0.00014 27.2 2.0 33 23-55 15-48 (99)
2 d2hiqa1 d.58.4.12 (A:9-104) Hy 38.5 5.8 0.00043 24.6 1.3 16 20-35 31-46 (96)
3 d1rp3a1 a.4.13.1 (A:87-163) Si 23.4 47 0.0035 17.8 3.5 26 38-63 4-29 (77)
4 d1ji5a_ a.25.1.1 (A:) Dodecame 16.4 40 0.0029 19.6 2.2 37 43-79 47-83 (142)
5 d1l0wa2 d.74.4.1 (A:295-414) P 15.6 28 0.002 21.0 1.3 18 12-29 43-60 (120)
6 d1c0aa2 d.74.4.1 (A:288-420) P 15.2 26 0.0019 21.2 1.1 18 13-30 51-68 (133)
7 d1jiga_ a.25.1.1 (A:) Dodecame 11.4 78 0.0057 18.3 2.5 33 43-75 51-83 (146)
8 d1hyea2 d.162.1.1 (A:146-313) 11.2 1.4E+02 0.01 17.4 3.7 30 25-54 135-166 (168)
9 d1zs3a1 a.25.1.1 (A:3-173) Dod 10.3 67 0.0049 20.5 2.0 36 44-79 68-103 (171)
10 d1zuja1 a.25.1.1 (A:6-173) Dod 9.9 76 0.0056 19.9 2.1 34 44-77 65-98 (168)
No 1
>d2ezla_ a.4.1.2 (A:) Ibeta subdomain of the mu end DNA-binding domain of phage mu transposase {Bacteriophage mu [TaxId: 10677]}
Probab=62.73 E-value=1.9 Score=27.21 Aligned_cols=33 Identities=18% Similarity=0.316 Sum_probs=29.1
Q ss_pred cceeee-eecChhHHHHHHHHHHHHHHHHHHHHH
Q 034694 23 GLVWKR-IKLTTTRKANAKKRLLRVWQNEAVLRA 55 (87)
Q Consensus 23 GLLWK~-~RLS~trKan~RkRLr~Vdqvia~l~a 55 (87)
.-||.+ =++|..+|..++.||..|.+|.+-+.+
T Consensus 15 ~~LWa~~e~~s~k~k~~Ak~RL~~l~~V~~L~~~ 48 (99)
T d2ezla_ 15 EALWSKWDNASDSQRRLAEKWLPAVQAADEMLNQ 48 (99)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 457888 789999999999999999999888765
No 2
>d2hiqa1 d.58.4.12 (A:9-104) Hypothetical protein YdhR {Escherichia coli [TaxId: 562]}
Probab=38.48 E-value=5.8 Score=24.60 Aligned_cols=16 Identities=19% Similarity=0.472 Sum_probs=12.0
Q ss_pred CCCcceeeeeecChhH
Q 034694 20 DSGGLVWKRIKLTTTR 35 (87)
Q Consensus 20 dsGGLLWK~~RLS~tr 35 (87)
.-+||+||.|-.+...
T Consensus 31 ~epGLi~K~~~~~~~~ 46 (96)
T d2hiqa1 31 QEPGFLWKVWTESEKN 46 (96)
T ss_dssp TSTTEEEEEEEEETTT
T ss_pred cCCCceEEEEEecCCC
Confidence 3589999998776543
No 3
>d1rp3a1 a.4.13.1 (A:87-163) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}
Probab=23.42 E-value=47 Score=17.84 Aligned_cols=26 Identities=12% Similarity=0.153 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCC
Q 034694 38 NAKKRLLRVWQNEAVLRACSEPPPSK 63 (87)
Q Consensus 38 n~RkRLr~Vdqvia~l~a~~~~~p~~ 63 (87)
..|++.++|...+..|.+...-+|+.
T Consensus 4 s~r~~~~ki~~a~~~L~~~lGR~Pt~ 29 (77)
T d1rp3a1 4 QVREKERRIKEVVEKLKEKLGREPTD 29 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHCcCCCH
Confidence 46788899999999998887777653
No 4
>d1ji5a_ a.25.1.1 (A:) Dodecameric ferritin homolog {Bacillus anthracis, Dlp-1 [TaxId: 1392]}
Probab=16.38 E-value=40 Score=19.61 Aligned_cols=37 Identities=14% Similarity=0.045 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCcccccCCCccCCCCC
Q 034694 43 LLRVWQNEAVLRACSEPPPSKTSEFSADGGGQGDSGG 79 (87)
Q Consensus 43 Lr~Vdqvia~l~a~~~~~p~~~~~~~~~~~~~~~~~~ 79 (87)
...+|.+.+-|++-...||+....+...+.+...+++
T Consensus 47 ~~~~D~lAERi~~Lgg~p~~~~~~~~~~s~i~e~~~~ 83 (142)
T d1ji5a_ 47 ATHIDEIAERILAIGGKPVATMKEYLEISSIQEAAYG 83 (142)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCHHHHHHHCCCCCCCTT
T ss_pred HHHHHHHHHHHHHccCCCCcCHHHHHhhCcCcccCCC
Confidence 3578999999999999998888766665555544443
No 5
>d1l0wa2 d.74.4.1 (A:295-414) Prokaryotic AspRS, insert domain {Thermus thermophilus, AspRS-1 [TaxId: 274]}
Probab=15.56 E-value=28 Score=21.04 Aligned_cols=18 Identities=39% Similarity=0.951 Sum_probs=15.0
Q ss_pred hhhhhhccCCCcceeeee
Q 034694 12 VMEIVKKHDSGGLVWKRI 29 (87)
Q Consensus 12 v~eivkk~dsGGLLWK~~ 29 (87)
.-|++|++...||.|=++
T Consensus 43 l~~~ak~~gakGL~~ik~ 60 (120)
T d1l0wa2 43 LEEVAKRHKAQGLAWARV 60 (120)
T ss_dssp HHHHHHHTSCSCCEEEEE
T ss_pred HHHHHHHhhhhhhheeEe
Confidence 457899999999999664
No 6
>d1c0aa2 d.74.4.1 (A:288-420) Prokaryotic AspRS, insert domain {Escherichia coli [TaxId: 562]}
Probab=15.18 E-value=26 Score=21.23 Aligned_cols=18 Identities=22% Similarity=0.373 Sum_probs=15.1
Q ss_pred hhhhhccCCCcceeeeee
Q 034694 13 MEIVKKHDSGGLVWKRIK 30 (87)
Q Consensus 13 ~eivkk~dsGGLLWK~~R 30 (87)
-+++|++..+||.|=++.
T Consensus 51 ~~~ak~~ga~GL~~~k~~ 68 (133)
T d1c0aa2 51 GNFVKIYGAKGLAYIKVN 68 (133)
T ss_dssp HHHHHHTTCSCCCEEEES
T ss_pred HHHHHHhCCCcceEEEEe
Confidence 468899999999997754
No 7
>d1jiga_ a.25.1.1 (A:) Dodecameric ferritin homolog {Bacillus anthracis, Dlp-2 [TaxId: 1392]}
Probab=11.40 E-value=78 Score=18.27 Aligned_cols=33 Identities=12% Similarity=0.001 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCcccccCCCccC
Q 034694 43 LLRVWQNEAVLRACSEPPPSKTSEFSADGGGQG 75 (87)
Q Consensus 43 Lr~Vdqvia~l~a~~~~~p~~~~~~~~~~~~~~ 75 (87)
...+|.+.+-|+.-...||+....+...+.++-
T Consensus 51 ~~~~D~iAERi~~lgg~p~~~~~~~~~~s~i~e 83 (146)
T d1jiga_ 51 GTYIDELAERILALEGKPLATMKEYLATSSVNE 83 (146)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCHHHHHHHCCSCC
T ss_pred HHHHHHHHHHHHHccCCCccCHHHHhhcCcCcc
Confidence 357899999999998888888766655544443
No 8
>d1hyea2 d.162.1.1 (A:146-313) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=11.17 E-value=1.4e+02 Score=17.35 Aligned_cols=30 Identities=10% Similarity=0.012 Sum_probs=25.2
Q ss_pred eeee--eecChhHHHHHHHHHHHHHHHHHHHH
Q 034694 25 VWKR--IKLTTTRKANAKKRLLRVWQNEAVLR 54 (87)
Q Consensus 25 LWK~--~RLS~trKan~RkRLr~Vdqvia~l~ 54 (87)
+|++ +.||+.-+...++-...+.++++.++
T Consensus 135 v~~i~~l~Ls~~E~~~l~~Sa~~lk~~~~~~k 166 (168)
T d1hyea2 135 IEEVVSIELDKDEIIAFRKSAEIIKKYCEEVK 166 (168)
T ss_dssp EEEECCCCCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEecCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 5677 79999999999998888888888764
No 9
>d1zs3a1 a.25.1.1 (A:3-173) Dodecameric ferritin homolog {Lactococcus lactis, DpsB [TaxId: 1358]}
Probab=10.30 E-value=67 Score=20.50 Aligned_cols=36 Identities=19% Similarity=0.056 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhCCCCCCCCcccccCCCccCCCCC
Q 034694 44 LRVWQNEAVLRACSEPPPSKTSEFSADGGGQGDSGG 79 (87)
Q Consensus 44 r~Vdqvia~l~a~~~~~p~~~~~~~~~~~~~~~~~~ 79 (87)
..+|.+-+-|++-...||+....|..-+.+.-..|+
T Consensus 68 ~~~D~iAEri~~lG~~p~~t~~e~~e~s~i~e~~~~ 103 (171)
T d1zs3a1 68 EYFFKISDLLLDENEIVPSTTEEFLKYHKFITEDPK 103 (171)
T ss_dssp HHHHHHHHHHHHTTCCCCCSHHHHHHHCCSCCCCGG
T ss_pred HHHHHHHHHHHHCCCCCCccHHHHHHHccCccCCCC
Confidence 358899999999999999999888776666554444
No 10
>d1zuja1 a.25.1.1 (A:6-173) Dodecameric ferritin homolog {Lactococcus lactis, DpsA [TaxId: 1358]}
Probab=9.86 E-value=76 Score=19.94 Aligned_cols=34 Identities=15% Similarity=0.067 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHhCCCCCCCCcccccCCCccCCC
Q 034694 44 LRVWQNEAVLRACSEPPPSKTSEFSADGGGQGDS 77 (87)
Q Consensus 44 r~Vdqvia~l~a~~~~~p~~~~~~~~~~~~~~~~ 77 (87)
..+|.+-+-|++-...||+....+...+.+.-+.
T Consensus 65 ~~~D~iAEri~~lG~~~~~t~~e~~~~s~i~E~~ 98 (168)
T d1zuja1 65 EWFYLISEQLLDENELVPTTLDEFVSNHKFIEND 98 (168)
T ss_dssp HHHHHHHHHHHHTTCCCCCSHHHHHHHCCSCCCC
T ss_pred HHHHHHHHHHHHCCCCCCCcHHHHHHHccCcccc
Confidence 3588999999999999999888876655554433
Done!