BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034696
(86 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1K30|A Chain A, Crystal Structure Analysis Of Squash (Cucurbita Moschata)
Glycerol-3-Phosphate (1)-Acyltransferase
Length = 368
Score = 114 bits (284), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 52/69 (75%), Positives = 60/69 (86%)
Query: 1 MRRLAEHSGIPGHIYPLALLCHDIMPPPPQVEREVGEKRVISFHGAGLSVAPEISFADII 60
MRRL +HS +PGH++PLALLCHDIMPPP QVE E+GEKRVI+F+GAGLSVAPEISF +I
Sbjct: 258 MRRLIQHSDVPGHLFPLALLCHDIMPPPSQVEIEIGEKRVIAFNGAGLSVAPEISFEEIA 317
Query: 61 TASKNPEEV 69
KNPEEV
Sbjct: 318 ATHKNPEEV 326
>pdb|1IUQ|A Chain A, The 1.55 A Crystal Structure Of Glycerol-3-phosphate
Acyltransferase
Length = 367
Score = 112 bits (280), Expect = 5e-26, Method: Composition-based stats.
Identities = 50/68 (73%), Positives = 58/68 (85%)
Query: 2 RRLAEHSGIPGHIYPLALLCHDIMPPPPQVEREVGEKRVISFHGAGLSVAPEISFADIIT 61
RRL +HS +PGH++PLALLCHDI PPP QVE E+GEKRVI+F+GAGLSVAPEISF +I
Sbjct: 258 RRLIQHSDVPGHLFPLALLCHDIXPPPSQVEIEIGEKRVIAFNGAGLSVAPEISFEEIAA 317
Query: 62 ASKNPEEV 69
KNPEEV
Sbjct: 318 THKNPEEV 325
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 30.0 bits (66), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 28 PPQVEREVGEKRVISFHGAGLSVAPEISFADIITASKNPEEVGWVITFCSC 78
PP+ + R++S HG +SV PE +F D+ S +G +C C
Sbjct: 94 PPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSH--LAIGANPLYCDC 142
>pdb|2WWB|A Chain A, Cryo-Em Structure Of The Mammalian Sec61 Complex Bound To
The Actively Translating Wheat Germ 80s Ribosome
Length = 476
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 8 SGIPGHIYPLALLCHDIMPP 27
SG P YP+ LCH + PP
Sbjct: 329 SGGPARAYPVGGLCHYLSPP 348
>pdb|2PKF|A Chain A, Crystal Structure Of M Tuberculosis Adenosine Kinase (Apo)
pdb|2PKF|B Chain B, Crystal Structure Of M Tuberculosis Adenosine Kinase (Apo)
pdb|2PKK|A Chain A, Crystal Structure Of M Tuberculosis Adenosine Kinase
Complexed With 2- Fluro Adenosine
pdb|2PKN|A Chain A, Crystal Structure Of M Tuberculosis Adenosine Kinase
Complexed With Amp-Pcp (Non-Hydrolyzable Atp Analog)
pdb|2PKM|A Chain A, Crystal Structure Of M Tuberculosis Adenosine Kinase
Complexed With Adenosine
Length = 334
Score = 26.2 bits (56), Expect = 4.3, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 34 EVGEKRVISFHGAGLSVAPEISFADIITASKNPEEV 69
+V ++ SF+ +S A I AD+++A PE V
Sbjct: 117 DVDMAQIASFYPGAMSEARNIKLADVVSAIGKPELV 152
>pdb|2BO9|B Chain B, Human Carboxypeptidase A4 In Complex With Human Latexin.
pdb|2BO9|D Chain D, Human Carboxypeptidase A4 In Complex With Human Latexin
Length = 222
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
Query: 3 RLAEHSGIPG--HIYPLALLCHDIMPPPPQVEREVGEKRVISFHGAGLSVAPEISFADII 60
+ A IPG H Y L +I+ Q + +V + + G APE++F
Sbjct: 38 KQASMEDIPGRGHKYRLKFAVEEII----QKQVKVNCTAEVLYPSTGQETAPEVNFTFEG 93
Query: 61 TASKNPEE 68
KNP+E
Sbjct: 94 ETGKNPDE 101
>pdb|3V4P|B Chain B, Crystal Structure Of A4b7 Headpiece Complexed With Fab
Act-1
pdb|3V4P|D Chain D, Crystal Structure Of A4b7 Headpiece Complexed With Fab
Act-1
pdb|3V4V|B Chain B, Crystal Structure Of A4b7 Headpiece Complexed With Fab
Act-1 And Ro0505376
pdb|3V4V|D Chain D, Crystal Structure Of A4b7 Headpiece Complexed With Fab
Act-1 And Ro0505376
Length = 503
Score = 25.8 bits (55), Expect = 6.9, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 32 EREVGEKRVISFHGAGLSVAPEISFADIITASKNPEEVGW 71
EREVG + V +G +PE F I+ A+ E++GW
Sbjct: 224 EREVGRQSV-----SGNLDSPEGGFDAILQAALCQEQIGW 258
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.142 0.463
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,811,841
Number of Sequences: 62578
Number of extensions: 98247
Number of successful extensions: 276
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 270
Number of HSP's gapped (non-prelim): 9
length of query: 86
length of database: 14,973,337
effective HSP length: 54
effective length of query: 32
effective length of database: 11,594,125
effective search space: 371012000
effective search space used: 371012000
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)