Query 034696
Match_columns 86
No_of_seqs 48 out of 50
Neff 3.1
Searched_HMMs 46136
Date Fri Mar 29 05:32:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034696.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034696hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02349 glycerol-3-phosphate 100.0 2.7E-40 5.9E-45 268.9 3.9 81 1-81 328-408 (426)
2 cd07985 LPLAT_GPAT Lysophospho 100.0 1.1E-33 2.4E-38 215.0 3.0 81 1-81 148-228 (235)
3 COG0321 LipB Lipoate-protein l 72.2 1.9 4E-05 33.7 1.0 20 37-56 150-169 (221)
4 cd07987 LPLAT_MGAT-like Lysoph 70.3 3.1 6.8E-05 29.3 1.7 71 3-79 122-201 (212)
5 PLN02783 diacylglycerol O-acyl 60.7 14 0.00031 29.0 3.9 56 3-60 203-276 (315)
6 KOG4077 Cytochrome c oxidase, 59.4 2.9 6.4E-05 31.1 -0.1 24 19-42 75-98 (149)
7 cd06551 LPLAT Lysophospholipid 55.0 7.7 0.00017 26.0 1.4 42 4-61 129-170 (187)
8 cd07989 LPLAT_AGPAT-like Lysop 52.4 13 0.00028 24.8 2.2 47 3-59 123-169 (184)
9 PRK14345 lipoate-protein ligas 51.0 15 0.00032 28.4 2.6 52 28-79 144-213 (234)
10 cd07986 LPLAT_ACT14924-like Ly 51.0 16 0.00034 26.1 2.5 65 3-71 130-203 (210)
11 smart00386 HAT HAT (Half-A-TPR 48.2 15 0.00032 17.5 1.5 14 64-77 1-14 (33)
12 PF05114 DUF692: Protein of un 47.9 8.2 0.00018 30.2 0.7 26 28-53 43-68 (274)
13 PRK14348 lipoate-protein ligas 47.1 18 0.00039 27.7 2.5 45 34-78 154-215 (221)
14 PRK14346 lipoate-protein ligas 46.0 19 0.00041 28.0 2.5 44 34-77 165-224 (230)
15 TIGR00506 ribB 3,4-dihydroxy-2 43.6 11 0.00024 28.5 0.8 40 9-48 122-161 (199)
16 PRK05409 hypothetical protein; 41.4 13 0.00029 29.3 1.0 33 27-59 44-78 (281)
17 PF03509 Connexin50: Gap junct 40.6 11 0.00023 24.9 0.3 23 4-26 9-31 (66)
18 PF13176 TPR_7: Tetratricopept 40.5 28 0.0006 18.4 1.9 22 56-77 5-26 (36)
19 PRK01792 ribB 3,4-dihydroxy-2- 39.8 13 0.00029 28.6 0.7 40 9-48 132-171 (214)
20 TIGR00214 lipB lipoate-protein 39.3 18 0.00039 27.0 1.4 23 34-56 120-142 (184)
21 PRK15018 1-acyl-sn-glycerol-3- 39.0 35 0.00075 25.6 2.9 45 3-60 165-210 (245)
22 cd00923 Cyt_c_Oxidase_Va Cytoc 35.3 21 0.00046 25.1 1.1 42 19-65 33-74 (103)
23 PLN02901 1-acyl-sn-glycerol-3- 34.7 53 0.0012 23.6 3.2 45 3-57 148-193 (214)
24 PF02284 COX5A: Cytochrome c o 33.3 17 0.00036 25.8 0.3 45 19-68 36-80 (108)
25 PRK14343 lipoate-protein ligas 33.2 39 0.00084 26.3 2.4 46 34-79 155-216 (235)
26 PRK14347 lipoate-protein ligas 33.1 25 0.00055 26.8 1.4 46 34-79 145-206 (209)
27 cd07992 LPLAT_AAK14816-like Ly 31.1 44 0.00095 23.5 2.2 35 44-79 166-200 (203)
28 PRK14341 lipoate-protein ligas 30.7 27 0.00059 26.6 1.2 45 34-78 148-208 (213)
29 PRK14349 lipoate-protein ligas 29.5 31 0.00066 26.7 1.3 45 34-78 141-201 (220)
30 cd00296 SIR2 SIR2 superfamily 29.1 30 0.00064 24.5 1.1 23 38-60 1-24 (222)
31 PF12944 DUF3840: Protein of u 27.9 28 0.00061 24.5 0.7 14 19-32 85-98 (104)
32 PRK14342 lipoate-protein ligas 27.8 34 0.00074 26.1 1.3 23 34-56 140-162 (213)
33 PF07870 DUF1657: Protein of u 27.7 55 0.0012 19.6 1.9 22 55-77 15-36 (50)
34 PF00926 DHBP_synthase: 3,4-di 27.1 20 0.00042 27.0 -0.1 40 9-48 117-156 (194)
35 PF09976 TPR_21: Tetratricopep 26.7 56 0.0012 21.5 2.0 22 56-77 124-145 (145)
36 PRK00910 ribB 3,4-dihydroxy-2- 26.0 26 0.00056 27.1 0.3 40 9-48 133-172 (218)
37 PF07719 TPR_2: Tetratricopept 25.4 81 0.0017 15.3 2.1 20 58-77 9-28 (34)
38 PRK14344 lipoate-protein ligas 25.4 42 0.00091 25.9 1.4 26 34-59 158-184 (223)
39 COG0108 RibB 3,4-dihydroxy-2-b 25.0 31 0.00066 26.7 0.6 46 9-55 121-166 (203)
40 PTZ00261 acyltransferase; Prov 24.2 49 0.0011 27.3 1.6 46 3-58 242-289 (355)
41 PF13181 TPR_8: Tetratricopept 23.2 81 0.0018 15.5 1.8 21 57-77 8-28 (34)
42 PRK00014 ribB 3,4-dihydroxy-2- 22.9 32 0.00068 26.9 0.3 40 9-48 137-176 (230)
43 PF00515 TPR_1: Tetratricopept 21.7 72 0.0016 15.8 1.5 19 59-77 10-28 (34)
No 1
>PLN02349 glycerol-3-phosphate acyltransferase
Probab=100.00 E-value=2.7e-40 Score=268.92 Aligned_cols=81 Identities=53% Similarity=0.891 Sum_probs=80.3
Q ss_pred ChhhhhhcCCCcceeeehhhcccCCCCChhhhhhhcceeeeeeecceeeeccccchhhhhhhcCChHHHhhHHhhhhcce
Q 034696 1 MRRLAEHSGIPGHIYPLALLCHDIMPPPPQVEREVGEKRVISFHGAGLSVAPEISFADIITASKNPEEVGWVITFCSCIS 80 (86)
Q Consensus 1 mR~L~~~s~~ptHfyPlAL~tydImPPP~~vekeIGE~R~~~f~gvgls~g~EI~~~~i~~~~e~~~~a~~a~s~~ly~s 80 (86)
||+|++|||+|||||||||+||||||||+||||+|||+|+|+||||||||||||||++++++++|++++|++|||++|+|
T Consensus 328 mR~l~~~s~~ptHfYPlAl~~yDImPPP~~VEkeIGE~R~v~F~gvGlsvg~EI~~~~~~~~~~~~~e~r~~~t~~~~~~ 407 (426)
T PLN02349 328 MRRLTEKSKAPGHFYPLAMLSYDIMPPPPQVEKEIGERRLVGFTGVGLSVGEEIDFSDITAACEGGAEAREAFTQAAYAS 407 (426)
T ss_pred HHHHHHhcCCCccccchHHHhCccCCCccccccccCceeeeeeecceeeeccccchHhhhhhcCChHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred e
Q 034696 81 L 81 (86)
Q Consensus 81 v 81 (86)
|
T Consensus 408 V 408 (426)
T PLN02349 408 V 408 (426)
T ss_pred H
Confidence 7
No 2
>cd07985 LPLAT_GPAT Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: GPAT. Lysophospholipid acyltransferase (LPLAT) superfamily member: glycerol-3-phosphate 1-acyltransferase (GPAT, PlsB). LPLATs are acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. This subgroup includes glycerol-3-phosphate 1-acyltransferase (GPAT, PlsB).
Probab=99.98 E-value=1.1e-33 Score=215.00 Aligned_cols=81 Identities=51% Similarity=0.843 Sum_probs=79.8
Q ss_pred ChhhhhhcCCCcceeeehhhcccCCCCChhhhhhhcceeeeeeecceeeeccccchhhhhhhcCChHHHhhHHhhhhcce
Q 034696 1 MRRLAEHSGIPGHIYPLALLCHDIMPPPPQVEREVGEKRVISFHGAGLSVAPEISFADIITASKNPEEVGWVITFCSCIS 80 (86)
Q Consensus 1 mR~L~~~s~~ptHfyPlAL~tydImPPP~~vekeIGE~R~~~f~gvgls~g~EI~~~~i~~~~e~~~~a~~a~s~~ly~s 80 (86)
||+|+++||+|||||||||+||||||||++|||+|||+|+++|+||||+||++|++++++++++|+++++++|++++|++
T Consensus 148 ~~~La~~s~~p~hi~Plai~~ydi~Ppp~~v~~~ige~r~~~f~~v~i~vg~~i~~~~~~~~~~d~~e~~~~~~~~i~~~ 227 (235)
T cd07985 148 MRLLAQKSRVPTHLYPMALLTYDIMPPPKQVEKEIGEKRAVAFTGVGLAVGEEIDFSAIAATHKDPEEVREAFSKAAFDS 227 (235)
T ss_pred HHHHHHhcCCCceEEeeEEEeecccCCCccccccccccccccccceEEEecCCccchhhhcccCCcHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred e
Q 034696 81 L 81 (86)
Q Consensus 81 v 81 (86)
|
T Consensus 228 v 228 (235)
T cd07985 228 V 228 (235)
T ss_pred H
Confidence 7
No 3
>COG0321 LipB Lipoate-protein ligase B [Coenzyme metabolism]
Probab=72.20 E-value=1.9 Score=33.68 Aligned_cols=20 Identities=35% Similarity=0.574 Sum_probs=17.7
Q ss_pred ceeeeeeecceeeeccccch
Q 034696 37 EKRVISFHGAGLSVAPEISF 56 (86)
Q Consensus 37 E~R~~~f~gvgls~g~EI~~ 56 (86)
=+|.|+|||+.||++.+++.
T Consensus 150 irr~vs~HGlALNv~~DL~~ 169 (221)
T COG0321 150 IRRGVTFHGLALNVNMDLSP 169 (221)
T ss_pred EecccceeeeEEeccCCchh
Confidence 47999999999999998764
No 4
>cd07987 LPLAT_MGAT-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this suubgroup are such LPLATs as 2-acylglycerol O-acyltransferase (MGAT), and similar proteins.
Probab=70.32 E-value=3.1 Score=29.33 Aligned_cols=71 Identities=15% Similarity=0.003 Sum_probs=40.8
Q ss_pred hhhhhcCCCcceeeehhh-cccCCCCChh--------hhhhhcceeeeeeecceeeeccccchhhhhhhcCChHHHhhHH
Q 034696 3 RLAEHSGIPGHIYPLALL-CHDIMPPPPQ--------VEREVGEKRVISFHGAGLSVAPEISFADIITASKNPEEVGWVI 73 (86)
Q Consensus 3 ~L~~~s~~ptHfyPlAL~-tydImPPP~~--------vekeIGE~R~~~f~gvgls~g~EI~~~~i~~~~e~~~~a~~a~ 73 (86)
+||.++|+| ++|+++. +.+.+|--.. ....+..+|. ..+-+.+|+-|+..+....-++.| ..+.+
T Consensus 122 ~lA~~~~~p--IvPv~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~~---~~i~v~~G~Pi~~~~~~~~~~~~~-~~~~~ 195 (212)
T cd07987 122 RLALRAGAP--IVPVFTFGEEELFRVLGDPDGPVGKRLFRLLPLPRR---LPLYPVFGEPIVVPRPPIPDPPDE-DVEEL 195 (212)
T ss_pred HHHHHcCCC--eEeEEEeCcHHHHhhhccCCCCceeehhceeccCCC---CcceEEeCCCccCCCCCCCCcCHH-HHHHH
Confidence 578888987 8999994 6666652111 1112222221 578899999999877633334433 33334
Q ss_pred hhhhcc
Q 034696 74 TFCSCI 79 (86)
Q Consensus 74 s~~ly~ 79 (86)
++.+.+
T Consensus 196 ~~~~~~ 201 (212)
T cd07987 196 HQKYIA 201 (212)
T ss_pred HHHHHH
Confidence 444443
No 5
>PLN02783 diacylglycerol O-acyltransferase
Probab=60.67 E-value=14 Score=28.98 Aligned_cols=56 Identities=16% Similarity=0.259 Sum_probs=35.9
Q ss_pred hhhhhcCCCcceeeehhh----cccCCCCChh----hhhhhcceeee----------eeecceeeeccccchhhhh
Q 034696 3 RLAEHSGIPGHIYPLALL----CHDIMPPPPQ----VEREVGEKRVI----------SFHGAGLSVAPEISFADII 60 (86)
Q Consensus 3 ~L~~~s~~ptHfyPlAL~----tydImPPP~~----vekeIGE~R~~----------~f~gvgls~g~EI~~~~i~ 60 (86)
+||.++|+| +.|++.. +|+..+|... +.+.+|=.-.. ...++.+-+|+-|++++..
T Consensus 203 ~lA~~~g~P--IVPv~i~G~~~~~~~~~~~~~~~~~l~r~~~~~p~~~wg~~~~piP~~~~i~vvvG~PI~v~~~~ 276 (315)
T PLN02783 203 KIAMETGAP--LVPVFCFGQTRAYKWWKPGGPLVPKLSRAIGFTPIVFWGRYGSPIPHRTPMHVVVGKPIEVKKNP 276 (315)
T ss_pred HHHHHcCCC--EEEEEEECchhhhhhhcCCccHHHHHHHhcCcCceeeecccCcccCCCceEEEEecCCccCCCCC
Confidence 578888888 8999866 6776665422 22323211111 1268888999999998754
No 6
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=59.39 E-value=2.9 Score=31.12 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=20.8
Q ss_pred hhcccCCCCChhhhhhhcceeeee
Q 034696 19 LLCHDIMPPPPQVEREVGEKRVIS 42 (86)
Q Consensus 19 L~tydImPPP~~vekeIGE~R~~~ 42 (86)
+++||+.|-|+-||+.+---|-+|
T Consensus 75 l~~yDlVP~pkvIEaaLRA~RRvN 98 (149)
T KOG4077|consen 75 LFDYDLVPSPKVIEAALRACRRVN 98 (149)
T ss_pred hhccccCCChHHHHHHHHHHHHhc
Confidence 679999999999999987766665
No 7
>cd06551 LPLAT Lysophospholipid acyltransferases (LPLATs) of glycerophospholipid biosynthesis. Lysophospholipid acyltransferase (LPLAT) superfamily members are acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis. These proteins catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this superfamily are LPLATs such as glycerol-3-phosphate 1-acyltransferase (GPAT, PlsB), 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), lysophosphatidylcholine acyltransferase 1 (LPCAT-1), lysophosphatidylethanolamine acyltransferase (LPEAT, also known as, MBOAT2, membrane-bound O-acyltransferase domain-containing protein 2), lipid A biosynthesis lauroyl/myristoyl acyltransferase, 2-acylglycerol O-acyltransferase (MGAT), dihydroxyacetone phosphate acyltransferase (DHAPAT, also known as 1 glycerol-3-p
Probab=54.97 E-value=7.7 Score=25.96 Aligned_cols=42 Identities=26% Similarity=0.271 Sum_probs=28.9
Q ss_pred hhhhcCCCcceeeehhhcccCCCCChhhhhhhcceeeeeeecceeeeccccchhhhhh
Q 034696 4 LAEHSGIPGHIYPLALLCHDIMPPPPQVEREVGEKRVISFHGAGLSVAPEISFADIIT 61 (86)
Q Consensus 4 L~~~s~~ptHfyPlAL~tydImPPP~~vekeIGE~R~~~f~gvgls~g~EI~~~~i~~ 61 (86)
||+++ ..+++|+++...+... ..+..+-+.++++|.+++...
T Consensus 129 la~~~--~~~IvPv~i~~~~~~~--------------~~~~~~~i~~~~pi~~~~~~~ 170 (187)
T cd06551 129 LAEKA--GVPIVPVALRYTFELF--------------EQFPEIFVRIGPPIPYAETAL 170 (187)
T ss_pred HHHHc--CCcEEEEEEecccccc--------------CCCCcEEEEECCCcccccccc
Confidence 45554 4579999998766553 123457788899998888643
No 8
>cd07989 LPLAT_AGPAT-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.
Probab=52.42 E-value=13 Score=24.85 Aligned_cols=47 Identities=23% Similarity=0.297 Sum_probs=32.5
Q ss_pred hhhhhcCCCcceeeehhhcccCCCCChhhhhhhcceeeeeeecceeeeccccchhhh
Q 034696 3 RLAEHSGIPGHIYPLALLCHDIMPPPPQVEREVGEKRVISFHGAGLSVAPEISFADI 59 (86)
Q Consensus 3 ~L~~~s~~ptHfyPlAL~tydImPPP~~vekeIGE~R~~~f~gvgls~g~EI~~~~i 59 (86)
+||.+++.| ++|++....+.-.+.. .+-..+..+-+.+++.|..++.
T Consensus 123 ~lA~~~~~~--Vvpv~~~~~~~~~~~~--------~~~~~~~~~~i~~~~pi~~~~~ 169 (184)
T cd07989 123 RLAKEAGVP--IVPVAISGTWGSLPKG--------KKLPRPGRVTVRIGEPIPPEGL 169 (184)
T ss_pred HHHHHcCCC--EEeEEEeChhhhCcCC--------CCcCCCCcEEEEEcCCcChhhh
Confidence 466777766 7788777666544432 4445566678889999998886
No 9
>PRK14345 lipoate-protein ligase B; Provisional
Probab=51.05 E-value=15 Score=28.35 Aligned_cols=52 Identities=17% Similarity=0.264 Sum_probs=34.5
Q ss_pred Chhhhh-hhcceeeeeeecceeeeccccc-hhhh--h--------------hhcCChHHHhhHHhhhhcc
Q 034696 28 PPQVER-EVGEKRVISFHGAGLSVAPEIS-FADI--I--------------TASKNPEEVGWVITFCSCI 79 (86)
Q Consensus 28 P~~vek-eIGE~R~~~f~gvgls~g~EI~-~~~i--~--------------~~~e~~~~a~~a~s~~ly~ 79 (86)
..+|-. .|.=+|.+++||+.||+..++. |+.| | ...-+.++.++.+.+.+.+
T Consensus 144 ~~KIaaIGv~v~r~vT~HG~ALNV~~DL~~F~~IvPCGl~~~~vTSl~~~~g~~~~~~~v~~~l~~~f~~ 213 (234)
T PRK14345 144 DRKIAAIGIRVSRGVTMHGFALNCDNDLAAFDAIVPCGISDAGVTTLSAELGRTVTVAEVVDPVAAALCD 213 (234)
T ss_pred cceEEEEEeeeccceeecceEEEeCCChHHhceEEeCCCCCCcEEehhHhhCCCCCHHHHHHHHHHHHHH
Confidence 344433 5556899999999999999873 3433 1 1123667788888776654
No 10
>cd07986 LPLAT_ACT14924-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ACT14924. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized phospholipid/glycerol acyltransferases such as the Pectobacterium carotovorum subsp. carotovorum PC1 locus ACT14924 putative acyltransferase, and similar proteins.
Probab=51.04 E-value=16 Score=26.13 Aligned_cols=65 Identities=18% Similarity=0.170 Sum_probs=35.8
Q ss_pred hhhhhcCCCcceeeehhhccc---------CCCCChhhhhhhcceeeeeeecceeeeccccchhhhhhhcCChHHHhh
Q 034696 3 RLAEHSGIPGHIYPLALLCHD---------IMPPPPQVEREVGEKRVISFHGAGLSVAPEISFADIITASKNPEEVGW 71 (86)
Q Consensus 3 ~L~~~s~~ptHfyPlAL~tyd---------ImPPP~~vekeIGE~R~~~f~gvgls~g~EI~~~~i~~~~e~~~~a~~ 71 (86)
+||.++|+| +.|+++...+ ++|..... .-..+........+.+.+++.|+.+++.. .+|.++-.+
T Consensus 130 ~lA~~~~~p--IvPv~i~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~v~~g~pI~~~~~~~-~~~~~~l~~ 203 (210)
T cd07986 130 RLARKAKAP--VVPVYFSGRNSRLFYLAGLIHPTLRTL-LLPRELLNKRGKTIRIRVGRPIPPEELAR-FEDAEELAD 203 (210)
T ss_pred HHHHHHCCC--EEEEEEeeeCcHHHHHHHccCHHHHHH-HHHHHHHHhCCCEEEEEeCCcCCHHHHhc-CCCHHHHHH
Confidence 467777764 7888885432 22221100 00111111134668899999999999844 555544333
No 11
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=48.19 E-value=15 Score=17.51 Aligned_cols=14 Identities=7% Similarity=-0.102 Sum_probs=11.2
Q ss_pred CChHHHhhHHhhhh
Q 034696 64 KNPEEVGWVITFCS 77 (86)
Q Consensus 64 e~~~~a~~a~s~~l 77 (86)
++.++++++|.+++
T Consensus 1 ~~~~~~r~i~e~~l 14 (33)
T smart00386 1 GDIERARKIYERAL 14 (33)
T ss_pred CcHHHHHHHHHHHH
Confidence 46788999998876
No 12
>PF05114 DUF692: Protein of unknown function (DUF692); InterPro: IPR007801 The proteins in this entry are functionally uncharacterised.; PDB: 3BWW_A.
Probab=47.88 E-value=8.2 Score=30.24 Aligned_cols=26 Identities=31% Similarity=0.575 Sum_probs=15.3
Q ss_pred Chhhhhhhcceeeeeeecceeeeccc
Q 034696 28 PPQVEREVGEKRVISFHGAGLSVAPE 53 (86)
Q Consensus 28 P~~vekeIGE~R~~~f~gvgls~g~E 53 (86)
+...=..|.|+.-+.+||||+|+|..
T Consensus 43 ~~~~L~~i~~~~Pv~~HGv~lslG~~ 68 (274)
T PF05114_consen 43 PREQLEAIRERYPVSLHGVGLSLGSA 68 (274)
T ss_dssp HHHHHHHHTTTS-EEEB-S---TT-S
T ss_pred hHHHHHHHHhCCCEEEeccccccCCC
Confidence 34444578999999999999999754
No 13
>PRK14348 lipoate-protein ligase B; Provisional
Probab=47.15 E-value=18 Score=27.71 Aligned_cols=45 Identities=20% Similarity=0.218 Sum_probs=30.7
Q ss_pred hhcceeeeeeecceeeeccccchh-hh----------------hhhcCChHHHhhHHhhhhc
Q 034696 34 EVGEKRVISFHGAGLSVAPEISFA-DI----------------ITASKNPEEVGWVITFCSC 78 (86)
Q Consensus 34 eIGE~R~~~f~gvgls~g~EI~~~-~i----------------~~~~e~~~~a~~a~s~~ly 78 (86)
.+.=+|.+++||+.||+..++..= .| ....-+.++.++.+.+.+.
T Consensus 154 Gv~v~r~vT~HG~ALNv~~dL~~F~~IvPCGl~~~~vTSl~~~~g~~~~~~~v~~~l~~~f~ 215 (221)
T PRK14348 154 GVRSSHYVTMHGLALNVNTDLRYFSYIHPCGFIDKGVTSLQQELGHSIDMAEVKERLGRELL 215 (221)
T ss_pred eEEeccceeecceEEEecCChHHhccCccCCCCCCcEEeeHHHhCCCCCHHHHHHHHHHHHH
Confidence 455779999999999999876532 11 1223467778888766653
No 14
>PRK14346 lipoate-protein ligase B; Provisional
Probab=46.03 E-value=19 Score=27.98 Aligned_cols=44 Identities=20% Similarity=0.237 Sum_probs=29.0
Q ss_pred hhcceeeeeeecceeeeccccch-hhh--h-------------hhcCChHHHhhHHhhhh
Q 034696 34 EVGEKRVISFHGAGLSVAPEISF-ADI--I-------------TASKNPEEVGWVITFCS 77 (86)
Q Consensus 34 eIGE~R~~~f~gvgls~g~EI~~-~~i--~-------------~~~e~~~~a~~a~s~~l 77 (86)
.+.=+|.+++||+.||+..++.. +.| | ...-+.++.++.+.+++
T Consensus 165 Gv~v~r~vT~HG~ALNv~~DL~~F~~IvPCGl~~~~vTSL~~lg~~~~~~~v~~~l~~~f 224 (230)
T PRK14346 165 GIKVSRHCTYHGVALNVAMDLEPFSRINPCGYAGLQTVDLSTIGVQTTWDEAASVLGQQL 224 (230)
T ss_pred eeEEecceeecceeEEcCCChhhhCcEECCCCCCCceeeHHHhCCCCCHHHHHHHHHHHH
Confidence 34467999999999999987643 222 1 11236677777776554
No 15
>TIGR00506 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal.
Probab=43.65 E-value=11 Score=28.54 Aligned_cols=40 Identities=23% Similarity=0.412 Sum_probs=35.9
Q ss_pred CCCcceeeehhhcccCCCCChhhhhhhcceeeeeeeccee
Q 034696 9 GIPGHIYPLALLCHDIMPPPPQVEREVGEKRVISFHGAGL 48 (86)
Q Consensus 9 ~~ptHfyPlAL~tydImPPP~~vekeIGE~R~~~f~gvgl 48 (86)
..|||++||--.-.-++.-+-..|..+-=-|...+.|+|+
T Consensus 122 ~~PGHvfPL~a~~gGvl~R~GhTEaavdL~~lAGl~p~~v 161 (199)
T TIGR00506 122 RRPGHVFPLRAADGGVLTRGGHTEASVDLAELAGLKPAGV 161 (199)
T ss_pred CCCCccceEEeccCCCcCCCChHHHHHHHHHHcCCCceEE
Confidence 5899999998887789999999999998889999999886
No 16
>PRK05409 hypothetical protein; Provisional
Probab=41.39 E-value=13 Score=29.29 Aligned_cols=33 Identities=24% Similarity=0.433 Sum_probs=25.2
Q ss_pred CChhhhhhhcceeeeeeecceeeeccc--cchhhh
Q 034696 27 PPPQVEREVGEKRVISFHGAGLSVAPE--ISFADI 59 (86)
Q Consensus 27 PP~~vekeIGE~R~~~f~gvgls~g~E--I~~~~i 59 (86)
++...-+.|.|+--+.+||||+|+|.. +|.+-+
T Consensus 44 ~~~~~L~~i~e~~Pv~~HGv~LslGs~~~ld~~~L 78 (281)
T PRK05409 44 PPLAQLDAIRERYPLSLHGVSLSLGGAAPLDKDHL 78 (281)
T ss_pred chHHHHHHHHhcCCEEEcccccccCCCCCCCHHHH
Confidence 455566689999999999999999753 555444
No 17
>PF03509 Connexin50: Gap junction alpha-8 protein (Cx50); InterPro: IPR002266 The connexins are a family of integral membrane proteins that oligomerise to form intercellular channels that are clustered at gap junctions. These channels are specialised sites of cell-cell contact that allow the passage of ions, intracellular metabolites and messenger molecules (with molecular weight less than 1-2kDa) from the cytoplasm of one cell to its opposing neighbours. They are found in almost all vertebrate cell types, and somewhat similar proteins have been cloned from plant species. Invertebrates utilise a different family of molecules, innexins, that share a similar predicted secondary structure to the vertebrate connexins, but have no sequence identity to them []. Vertebrate gap junction channels are thought to participate in diverse biological functions. For instance, in the heart they permit the rapid cell-cell transfer of action potentials, ensuring coordinated contraction of the cardiomyocytes. They are also responsible for neurotransmission at specialised 'electrical' synapses. In non-excitable tissues, such as the liver, they may allow metabolic cooperation between cells. In the brain, glial cells are extensively-coupled by gap junctions; this allows waves of intracellular Ca2+ to propagate through nervous tissue, and may contribute to their ability to spatially-buffer local changes in extracellular K+ concentration []. The connexin protein family is encoded by at least 13 genes in rodents, with many homologues cloned from other species. They show overlapping tissue expression patterns, most tissues expressing more than one connexin type. Their conductances, permeability to different molecules, phosphorylation and voltage-dependence of their gating, have been found to vary. Possible communication diversity is increased further by the fact that gap junctions may be formed by the association of different connexin isoforms from apposing cells. However, in vitro studies have shown that not all possible combinations of connexins produce active channels [, ]. Hydropathy analysis predicts that all cloned connexins share a common transmembrane (TM) topology. Each connexin is thought to contain 4 TM domains, with two extracellular and three cytoplasmic regions. This model has been validated for several of the family members by in vitro biochemical analysis. Both N- and C-termini are thought to face the cytoplasm, and the third TM domain has an amphipathic character, suggesting that it contributes to the lining of the formed-channel. Amino acid sequence identity between the isoforms is ~50-80%, with the TM domains being well conserved. Both extracellular loops contain characteristically conserved cysteine residues, which likely form intramolecular disulphide bonds. By contrast, the single putative intracellular loop (between TM domains 2 and 3) and the cytoplasmic C terminus are highly variable among the family members. Six connexins are thought to associate to form a hemi-channel, or connexon. Two connexons then interact (likely via the extracellular loops of their connexins) to form the complete gap junction channel. NH2-*** *** *************-COOH ** ** ** ** ** ** ** ** Cytoplasmic ---**----**-----**----**---------------- ** ** ** ** Membrane ** ** ** ** ---**----**-----**----**---------------- ** ** ** ** Extracellular ** ** ** ** ** ** Two sets of nomenclature have been used to identify the connexins. The first, and most commonly used, classifies the connexin molecules according to molecular weight, such as connexin43 (abbreviated to Cx43), indicating a connexin of molecular weight close to 43kDa. However, studies have revealed cases where clear functional homologues exist across species that have quite different molecular masses; therefore, an alternative nomenclature was proposed based on evolutionary considerations, which divides the family into two major subclasses, alpha and beta, each with a number of members []. Due to their ubiquity and overlapping tissue distributions, it has proved difficult to elucidate the functions of individual connexin isoforms. To circumvent this problem, particular connexin-encoding genes have been subjected to targeted-disruption in mice, and the phenotype of the resulting animals investigated. Around half the connexin isoforms have been investigated in this manner []. Further insight into the functional roles of connexins has come from the discovery that a number of human diseases are caused by mutations in connexin genes. For instance, mutations in Cx32 give rise to a form of inherited peripheral neuropathy called X-linked dominant Charcot-Marie-Tooth disease []. Similarly, mutations in Cx26 are responsible for both autosomal recessive and dominant forms of nonsyndromic deafness, a disorder characterised by hearing loss, with no apparent effects on other organ systems. Gap junction alpha-8 protein (also called connexin50, Cx50, or lens fibre protein MP70) is a connexin of ~431 amino acid residues. The chicken isoform is shorter (399 residues) and is hence known as Cx45.6. Cx50 and Cx46 are the two gap junction proteins normally found in lens fibre cells of the eye. Evidence from both genetically-engineered mice, and from the identification of mutations in the human Cx50-encoding gene, highlight the importance of this connexin in maintaining lens transparency. Deletion of mice Cx50 produces a viable phenotype, but these animals start to develop cataracts (of the zonular pulverant type) at about one week old. They also have abnormally small eyes and lenses. Similarly, mutations in the human gene encoding Cx50 have been associated with the occurrence of congenital cataracts. Affected individuals develop cataracts (with zonular pulverent opacities), and analysis shows they have a single point mutation in the Cx50 coding region, resulting in a non-conservative substitution in the second putative TM domain of a serine residue for a proline.; GO: 0007154 cell communication, 0005922 connexon complex
Probab=40.57 E-value=11 Score=24.89 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=15.5
Q ss_pred hhhhcCCCcceeeehhhcccCCC
Q 034696 4 LAEHSGIPGHIYPLALLCHDIMP 26 (86)
Q Consensus 4 L~~~s~~ptHfyPlAL~tydImP 26 (86)
|.+.-|.-.|||||+=..-+--|
T Consensus 9 lLEEEK~vsh~~PLtEVG~E~~~ 31 (66)
T PF03509_consen 9 LLEEEKPVSHYFPLTEVGMEASP 31 (66)
T ss_pred hhhhhcchheecchhhhccccCC
Confidence 44555688999999866544433
No 18
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=40.48 E-value=28 Score=18.41 Aligned_cols=22 Identities=9% Similarity=-0.099 Sum_probs=16.9
Q ss_pred hhhhhhhcCChHHHhhHHhhhh
Q 034696 56 FADIITASKNPEEVGWVITFCS 77 (86)
Q Consensus 56 ~~~i~~~~e~~~~a~~a~s~~l 77 (86)
+.++.....|.++|.+.|.++|
T Consensus 5 Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 5 LGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 4556678899999999999855
No 19
>PRK01792 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=39.76 E-value=13 Score=28.57 Aligned_cols=40 Identities=25% Similarity=0.493 Sum_probs=35.6
Q ss_pred CCCcceeeehhhcccCCCCChhhhhhhcceeeeeeeccee
Q 034696 9 GIPGHIYPLALLCHDIMPPPPQVEREVGEKRVISFHGAGL 48 (86)
Q Consensus 9 ~~ptHfyPlAL~tydImPPP~~vekeIGE~R~~~f~gvgl 48 (86)
..|||++||--.---++--+-..|..+-=-|...+.|+|+
T Consensus 132 ~~PGHvfPL~a~~gGvl~R~GHTEaavdLa~lAGl~p~~v 171 (214)
T PRK01792 132 HRPGHVFPLRAANGGVLTRRGHTEAAVDLARLAGYKEAGV 171 (214)
T ss_pred CCCCccceEEeccCCCccCCChHHHHHHHHHHcCCCceEE
Confidence 4899999998887788999999999998889999999885
No 20
>TIGR00214 lipB lipoate-protein ligase B. Involved in lipoate biosynthesis as the main determinant of the lipoyl-protein ligase activity required for lipoylation of enzymes such as alpha-ketoacid dehydrogenases. Involved in activation and re-activation (following denaturation) of lipoyl-protein ligases (calcium ion-dependant process).
Probab=39.26 E-value=18 Score=26.97 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=18.7
Q ss_pred hhcceeeeeeecceeeeccccch
Q 034696 34 EVGEKRVISFHGAGLSVAPEISF 56 (86)
Q Consensus 34 eIGE~R~~~f~gvgls~g~EI~~ 56 (86)
.+.=+|.+++||+.||+.+++..
T Consensus 120 Gv~v~r~vt~HG~ALNv~~dL~~ 142 (184)
T TIGR00214 120 GIRVRRGCTFHGLALNINMDLSP 142 (184)
T ss_pred EEEEeccEeecceEEEcCCCchH
Confidence 44467999999999999988654
No 21
>PRK15018 1-acyl-sn-glycerol-3-phosphate acyltransferase; Provisional
Probab=39.03 E-value=35 Score=25.65 Aligned_cols=45 Identities=16% Similarity=0.217 Sum_probs=31.4
Q ss_pred hhhhhcCCCcceeeehhhc-ccCCCCChhhhhhhcceeeeeeecceeeeccccchhhhh
Q 034696 3 RLAEHSGIPGHIYPLALLC-HDIMPPPPQVEREVGEKRVISFHGAGLSVAPEISFADII 60 (86)
Q Consensus 3 ~L~~~s~~ptHfyPlAL~t-ydImPPP~~vekeIGE~R~~~f~gvgls~g~EI~~~~i~ 60 (86)
++|.++|+| +.|+++.. ++.+|. .+ ..-+.+-+.+++-|+.++..
T Consensus 165 ~lA~~~~~P--IvPv~i~g~~~~~~~-~~----------~~~g~i~v~~~~PI~~~~~~ 210 (245)
T PRK15018 165 HAAIAAGVP--IIPVCVSTTSNKINL-NR----------LHNGLVIVEMLPPIDVSQYG 210 (245)
T ss_pred HHHHHcCCC--EEEEEEECccccccc-CC----------ccCeeEEEEEcCCCcCCCCC
Confidence 578889999 99999974 556542 11 12345778889999887753
No 22
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=35.33 E-value=21 Score=25.15 Aligned_cols=42 Identities=17% Similarity=0.288 Sum_probs=27.6
Q ss_pred hhcccCCCCChhhhhhhcceeeeeeecceeeeccccchhhhhhhcCC
Q 034696 19 LLCHDIMPPPPQVEREVGEKRVISFHGAGLSVAPEISFADIITASKN 65 (86)
Q Consensus 19 L~tydImPPP~~vekeIGE~R~~~f~gvgls~g~EI~~~~i~~~~e~ 65 (86)
|..||+.|.|+-|+..+---|-+|=-+..+-+ ++.+-..|++
T Consensus 33 l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~-----lE~vK~K~~~ 74 (103)
T cd00923 33 LFGYDLVPEPKVIEAALRACRRVNDFALAVRI-----LEAIKDKCGA 74 (103)
T ss_pred HhccccCCCcHHHHHHHHHHHHhhhHHHHHHH-----HHHHHHHccC
Confidence 56899999999999988776666533333221 3334456665
No 23
>PLN02901 1-acyl-sn-glycerol-3-phosphate acyltransferase
Probab=34.66 E-value=53 Score=23.58 Aligned_cols=45 Identities=22% Similarity=0.424 Sum_probs=30.2
Q ss_pred hhhhhcCCCcceeeehh-hcccCCCCChhhhhhhcceeeeeeecceeeeccccchh
Q 034696 3 RLAEHSGIPGHIYPLAL-LCHDIMPPPPQVEREVGEKRVISFHGAGLSVAPEISFA 57 (86)
Q Consensus 3 ~L~~~s~~ptHfyPlAL-~tydImPPP~~vekeIGE~R~~~f~gvgls~g~EI~~~ 57 (86)
++|.++|+| +.|+++ .+++++|..... ......+-+.+++.|+.+
T Consensus 148 ~lA~~~~~p--IvPv~i~g~~~~~~~~~~~--------~~~~~~i~v~~~~pi~~~ 193 (214)
T PLN02901 148 SVAAKTGVP--VVPITLVGTGKIMPNGKEG--------ILNPGSVKVVIHPPIEGS 193 (214)
T ss_pred HHHHHcCCC--EEEEEEecchhhCcCCCcc--------cccCCeEEEEECCCcCCC
Confidence 477888887 899999 588898854211 112233667788888764
No 24
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=33.30 E-value=17 Score=25.85 Aligned_cols=45 Identities=20% Similarity=0.330 Sum_probs=24.6
Q ss_pred hhcccCCCCChhhhhhhcceeeeeeecceeeeccccchhhhhhhcCChHH
Q 034696 19 LLCHDIMPPPPQVEREVGEKRVISFHGAGLSVAPEISFADIITASKNPEE 68 (86)
Q Consensus 19 L~tydImPPP~~vekeIGE~R~~~f~gvgls~g~EI~~~~i~~~~e~~~~ 68 (86)
|..||+.|.|.-|+..+---|-+|=-+..+-+ ++.+-..|+|..+
T Consensus 36 l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~-----lE~iK~K~~~~~~ 80 (108)
T PF02284_consen 36 LFGYDLVPEPKIIEAALRACRRVNDFALAVRI-----LEGIKDKCGNKKE 80 (108)
T ss_dssp HTTSSB---HHHHHHHHHHHHHTT-HHHHHHH-----HHHHHHHTTT-TT
T ss_pred HhccccCCChHHHHHHHHHHHHhhhHHHHHHH-----HHHHHHHccChHH
Confidence 57899999999999988655554433322221 3445555666543
No 25
>PRK14343 lipoate-protein ligase B; Provisional
Probab=33.16 E-value=39 Score=26.34 Aligned_cols=46 Identities=15% Similarity=0.133 Sum_probs=30.7
Q ss_pred hhcceeeeeeecceeeeccccch-hhh--h-------------hhcCChHHHhhHHhhhhcc
Q 034696 34 EVGEKRVISFHGAGLSVAPEISF-ADI--I-------------TASKNPEEVGWVITFCSCI 79 (86)
Q Consensus 34 eIGE~R~~~f~gvgls~g~EI~~-~~i--~-------------~~~e~~~~a~~a~s~~ly~ 79 (86)
.+.=+|.+++||+.||+..++.. +.| | ...-+.++.++.+.+.+.+
T Consensus 155 Gv~v~r~vT~HG~ALNv~~DL~~F~~I~PCGl~~~~vTSL~~lg~~~~~~~v~~~l~~~f~~ 216 (235)
T PRK14343 155 GLKIRNGCSYHGLSLNVKMDLRPFLAINPCGYAGLETVDMASLGVAADWADVAQTLARRLIA 216 (235)
T ss_pred eeeeecceeecccEEEeCCCchhhCcEECCCCCCCcEeeHHHhCCCCCHHHHHHHHHHHHHH
Confidence 44567999999999999987543 222 1 1123667777777666544
No 26
>PRK14347 lipoate-protein ligase B; Provisional
Probab=33.10 E-value=25 Score=26.79 Aligned_cols=46 Identities=15% Similarity=0.236 Sum_probs=30.4
Q ss_pred hhcceeeeeeecceeeeccccch-hhh--h-------------hhcCChHHHhhHHhhhhcc
Q 034696 34 EVGEKRVISFHGAGLSVAPEISF-ADI--I-------------TASKNPEEVGWVITFCSCI 79 (86)
Q Consensus 34 eIGE~R~~~f~gvgls~g~EI~~-~~i--~-------------~~~e~~~~a~~a~s~~ly~ 79 (86)
.+.=+|.+++||+.||+.+++.. +.| | ...-+.+++++++.+.+.+
T Consensus 145 Gv~v~r~vT~HG~AlNv~~dL~~F~~IvPCGl~~~~vTSl~~~g~~~~~~~v~~~l~~~f~~ 206 (209)
T PRK14347 145 GVRVRKWVTYHGVAINISTDLSKFSGIIPCGLENSLVTSLNQLGIHVEMSEFDKIIQTEFNK 206 (209)
T ss_pred eEEEecceeecceEEEeCCCccccCcEECCCCCCCcEeeHHHhCCCCCHHHHHHHHHHHHHH
Confidence 45567999999999999987643 222 1 1123567777777666543
No 27
>cd07992 LPLAT_AAK14816-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown AAK14816-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized glycerol-3-phosphate acyltransferases such as the Plasmodium falciparum locus AAK14816 putative acyltransferase, and similar proteins.
Probab=31.12 E-value=44 Score=23.47 Aligned_cols=35 Identities=11% Similarity=-0.050 Sum_probs=21.8
Q ss_pred ecceeeeccccchhhhhhhcCChHHHhhHHhhhhcc
Q 034696 44 HGAGLSVAPEISFADIITASKNPEEVGWVITFCSCI 79 (86)
Q Consensus 44 ~gvgls~g~EI~~~~i~~~~e~~~~a~~a~s~~ly~ 79 (86)
..+-+.+|+-|++++....-++.+ ..++.++.+++
T Consensus 166 ~~i~i~~g~pi~~~~~~~~~~~~~-~~~~~~~~~~~ 200 (203)
T cd07992 166 SRVLVEFGKPISVSAFEEAEASRD-VEKKLINQLEA 200 (203)
T ss_pred CeEEEEECCCcccccccccccchh-HHHHHHHHHHH
Confidence 457788899999988744333444 44444455554
No 28
>PRK14341 lipoate-protein ligase B; Provisional
Probab=30.66 E-value=27 Score=26.57 Aligned_cols=45 Identities=24% Similarity=0.366 Sum_probs=29.6
Q ss_pred hhcceeeeeeecceeeeccccch-hhh----------h-----hhcCChHHHhhHHhhhhc
Q 034696 34 EVGEKRVISFHGAGLSVAPEISF-ADI----------I-----TASKNPEEVGWVITFCSC 78 (86)
Q Consensus 34 eIGE~R~~~f~gvgls~g~EI~~-~~i----------~-----~~~e~~~~a~~a~s~~ly 78 (86)
.+.=+|.+++||+.||+..++.. +.| + ...-+.++.++.+.+++.
T Consensus 148 Gv~v~r~vT~HG~ALNv~~dL~~F~~IvPCGl~~~~vTSl~~~g~~~~~~~v~~~l~~~f~ 208 (213)
T PRK14341 148 GVRLRRWVSFHGISINVEPDLSHFSGIVPCGISEHGVTSLVDLGLPVTMDDVDAALKKAFE 208 (213)
T ss_pred eeeEecceeccceEEEecCChhhhCcEecCCCCCCcEeeHHHhCCCCCHHHHHHHHHHHHH
Confidence 34457999999999999998764 322 1 112256777777765553
No 29
>PRK14349 lipoate-protein ligase B; Provisional
Probab=29.48 E-value=31 Score=26.69 Aligned_cols=45 Identities=20% Similarity=0.311 Sum_probs=29.7
Q ss_pred hhcceeeeeeecceeeeccccc-hhhh--h-------------hhcCChHHHhhHHhhhhc
Q 034696 34 EVGEKRVISFHGAGLSVAPEIS-FADI--I-------------TASKNPEEVGWVITFCSC 78 (86)
Q Consensus 34 eIGE~R~~~f~gvgls~g~EI~-~~~i--~-------------~~~e~~~~a~~a~s~~ly 78 (86)
.+.=+|.+++||+.||+..++. |+.| | ...-+.++.++.+.+++-
T Consensus 141 Gv~v~r~vT~HG~ALNv~~DL~~F~~IvPCGl~~~~vTSl~~~g~~~~~~~v~~~l~~~f~ 201 (220)
T PRK14349 141 GVKVRNGYAYHGLALNIDMDLSPFLGINPCGYEGLRTVDLAACGVRTSVERAGELLAAQLA 201 (220)
T ss_pred eeEEecceeecceeEEecCCchhhCcEEcCCCCCCcEeeHHHhCCCCCHHHHHHHHHHHHH
Confidence 4556799999999999998764 3322 1 112366777777766543
No 30
>cd00296 SIR2 SIR2 superfamily of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer. Also included in this superfamily is a group of uncharacterized Sir2-like proteins which lack certain key catalytic
Probab=29.09 E-value=30 Score=24.53 Aligned_cols=23 Identities=43% Similarity=0.719 Sum_probs=17.9
Q ss_pred eeeeeeecceeeecccc-chhhhh
Q 034696 38 KRVISFHGAGLSVAPEI-SFADII 60 (86)
Q Consensus 38 ~R~~~f~gvgls~g~EI-~~~~i~ 60 (86)
+|++-|+|.|+|...-| ||.+..
T Consensus 1 k~iv~~tGAGiS~~sGiP~fr~~~ 24 (222)
T cd00296 1 KRVVVFTGAGISTESGIPDFRGLG 24 (222)
T ss_pred CCEEEEeCCccccccCCCCccccc
Confidence 57899999999997766 665543
No 31
>PF12944 DUF3840: Protein of unknown function (DUF3840)
Probab=27.85 E-value=28 Score=24.52 Aligned_cols=14 Identities=29% Similarity=0.888 Sum_probs=11.5
Q ss_pred hhcccCCCCChhhh
Q 034696 19 LLCHDIMPPPPQVE 32 (86)
Q Consensus 19 L~tydImPPP~~ve 32 (86)
=++-+++|||.++.
T Consensus 85 elsnevlppp~k~k 98 (104)
T PF12944_consen 85 ELSNEVLPPPRKMK 98 (104)
T ss_pred HhccccCCCchhhc
Confidence 36789999999875
No 32
>PRK14342 lipoate-protein ligase B; Provisional
Probab=27.84 E-value=34 Score=26.09 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=19.2
Q ss_pred hhcceeeeeeecceeeeccccch
Q 034696 34 EVGEKRVISFHGAGLSVAPEISF 56 (86)
Q Consensus 34 eIGE~R~~~f~gvgls~g~EI~~ 56 (86)
.|.=+|.+++||+.||+.+++..
T Consensus 140 Gv~v~r~vT~HG~AlNv~~dL~~ 162 (213)
T PRK14342 140 GLRIRRGCSFHGLALNVNMDLSP 162 (213)
T ss_pred EEeEecceeecceeEecCCCchh
Confidence 55567999999999999998743
No 33
>PF07870 DUF1657: Protein of unknown function (DUF1657); InterPro: IPR012452 This domain appears to be restricted to the Bacillales.
Probab=27.66 E-value=55 Score=19.58 Aligned_cols=22 Identities=5% Similarity=0.092 Sum_probs=15.3
Q ss_pred chhhhhhhcCChHHHhhHHhhhh
Q 034696 55 SFADIITASKNPEEVGWVITFCS 77 (86)
Q Consensus 55 ~~~~i~~~~e~~~~a~~a~s~~l 77 (86)
|++.++...+|.+ ||+.|.++.
T Consensus 15 ~Le~fal~T~d~~-AK~~y~~~a 36 (50)
T PF07870_consen 15 DLETFALQTQDQE-AKQMYEQAA 36 (50)
T ss_pred hHHHHHhhcCCHH-HHHHHHHHH
Confidence 5556666666665 999998764
No 34
>PF00926 DHBP_synthase: 3,4-dihydroxy-2-butanone 4-phosphate synthase; InterPro: IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase (4.1.99.12 from EC) (DHBP synthase) (RibB) catalyses the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate, the latter serving as the biosynthetic precursor for the xylene ring of riboflavin []. In Photobacterium leiognathi, the riboflavin synthesis genes ribB (DHBP synthase), ribE (riboflavin synthase), ribH (lumazone synthase) and ribA (GTP cyclohydrolase II) all reside in the lux operon []. RibB is sometimes found as a bifunctional enzyme with GTP cyclohydrolase II that catalyses the first committed step in the biosynthesis of riboflavin (IPR000926 from INTERPRO). No sequences with significant homology to DHBP synthase are found in the metazoa.; GO: 0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity, 0009231 riboflavin biosynthetic process; PDB: 1K4O_A 1K4L_A 1K4P_A 1K49_A 1K4I_A 1TKU_A 1TKS_B 2RIS_A 2RIU_A 3MIO_A ....
Probab=27.12 E-value=20 Score=26.98 Aligned_cols=40 Identities=20% Similarity=0.344 Sum_probs=32.4
Q ss_pred CCCcceeeehhhcccCCCCChhhhhhhcceeeeeeeccee
Q 034696 9 GIPGHIYPLALLCHDIMPPPPQVEREVGEKRVISFHGAGL 48 (86)
Q Consensus 9 ~~ptHfyPlAL~tydImPPP~~vekeIGE~R~~~f~gvgl 48 (86)
..|||++||--.---++=.+-..|..+-=-|...+.|+++
T Consensus 117 ~~PGHv~Pl~a~~gGvl~R~GhtEaavdLa~lAGl~p~av 156 (194)
T PF00926_consen 117 VRPGHVFPLRARPGGVLERRGHTEAAVDLARLAGLSPVAV 156 (194)
T ss_dssp EEEEEEEEEEE-TTGGGTSSSHHHHHHHHHHHTTS-SBEE
T ss_pred CCCCCCccceecCCcccCCCChHHHHHHHHHHhCCCCcEE
Confidence 4799999997766667788888898888889999999887
No 35
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=26.75 E-value=56 Score=21.54 Aligned_cols=22 Identities=18% Similarity=0.095 Sum_probs=18.2
Q ss_pred hhhhhhhcCChHHHhhHHhhhh
Q 034696 56 FADIITASKNPEEVGWVITFCS 77 (86)
Q Consensus 56 ~~~i~~~~e~~~~a~~a~s~~l 77 (86)
..++...-++.++|+++|.++|
T Consensus 124 ~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 124 LGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHhC
Confidence 4556677899999999998875
No 36
>PRK00910 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=26.00 E-value=26 Score=27.06 Aligned_cols=40 Identities=23% Similarity=0.453 Sum_probs=32.6
Q ss_pred CCCcceeeehhhcccCCCCChhhhhhhcceeeeeeeccee
Q 034696 9 GIPGHIYPLALLCHDIMPPPPQVEREVGEKRVISFHGAGL 48 (86)
Q Consensus 9 ~~ptHfyPlAL~tydImPPP~~vekeIGE~R~~~f~gvgl 48 (86)
..|||++||--.---++=-+-..|..+-=-|...+.|+|+
T Consensus 133 ~rPGHvfPL~a~~gGvl~R~GHTEaavdLa~lAGl~p~~v 172 (218)
T PRK00910 133 ARPGHVFPLRARAGGVLARRGHTEGTVDLMQMAGLQPAGV 172 (218)
T ss_pred CCCCccceEEeCCCCEecCCCccHHHHHHHHHcCCCceEE
Confidence 5899999998766667777778888887788888988875
No 37
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=25.44 E-value=81 Score=15.28 Aligned_cols=20 Identities=15% Similarity=-0.193 Sum_probs=14.5
Q ss_pred hhhhhcCChHHHhhHHhhhh
Q 034696 58 DIITASKNPEEVGWVITFCS 77 (86)
Q Consensus 58 ~i~~~~e~~~~a~~a~s~~l 77 (86)
.+--..++.++|++.|.+++
T Consensus 9 ~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 9 QAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHH
Confidence 34456788999999998875
No 38
>PRK14344 lipoate-protein ligase B; Provisional
Probab=25.37 E-value=42 Score=25.92 Aligned_cols=26 Identities=35% Similarity=0.592 Sum_probs=20.1
Q ss_pred hhcceeeeeeecceeeeccccc-hhhh
Q 034696 34 EVGEKRVISFHGAGLSVAPEIS-FADI 59 (86)
Q Consensus 34 eIGE~R~~~f~gvgls~g~EI~-~~~i 59 (86)
.+.=+|.+++||+.||+.+++. |+.|
T Consensus 158 Gv~v~r~vT~HG~ALNv~~dL~~F~~I 184 (223)
T PRK14344 158 GIGCRRWITQHGFSLNVDCDLEGFNKI 184 (223)
T ss_pred eEeEecceeecceEEecCCCccccCcE
Confidence 4446799999999999999874 4443
No 39
>COG0108 RibB 3,4-dihydroxy-2-butanone 4-phosphate synthase [Coenzyme metabolism]
Probab=25.02 E-value=31 Score=26.71 Aligned_cols=46 Identities=22% Similarity=0.410 Sum_probs=37.4
Q ss_pred CCCcceeeehhhcccCCCCChhhhhhhcceeeeeeecceeeeccccc
Q 034696 9 GIPGHIYPLALLCHDIMPPPPQVEREVGEKRVISFHGAGLSVAPEIS 55 (86)
Q Consensus 9 ~~ptHfyPlAL~tydImPPP~~vekeIGE~R~~~f~gvgls~g~EI~ 55 (86)
..|||++||--.---++=-+-..|..+-=-|...+.|+|+ ++|-++
T Consensus 121 ~~PGHVfpL~A~~ggVl~R~GHTEasVdLarlAGl~Pa~V-icEi~~ 166 (203)
T COG0108 121 RRPGHVFPLRAKDGGVLERRGHTEAAVDLARLAGLKPAGV-ICEIMN 166 (203)
T ss_pred CCCCCeeeeeeccCCeeccCChHHHHHHHHHHcCCCCcEE-EEEEeC
Confidence 5799999998776667778888888888889999999998 455444
No 40
>PTZ00261 acyltransferase; Provisional
Probab=24.18 E-value=49 Score=27.29 Aligned_cols=46 Identities=9% Similarity=0.115 Sum_probs=28.1
Q ss_pred hhhhhcCCCcceeeehhh-cccCCCCChhhhhhhcceeeeeeecceeeecc-ccchhh
Q 034696 3 RLAEHSGIPGHIYPLALL-CHDIMPPPPQVEREVGEKRVISFHGAGLSVAP-EISFAD 58 (86)
Q Consensus 3 ~L~~~s~~ptHfyPlAL~-tydImPPP~~vekeIGE~R~~~f~gvgls~g~-EI~~~~ 58 (86)
+|+.++|+| ++|.++. +++++|+ .. -+.. .-+.+-+.+|+ .|++++
T Consensus 242 ~LAieagvP--IVPvai~Gs~~~wP~-g~---~l~~----~pg~I~V~iG~~PI~~~~ 289 (355)
T PTZ00261 242 ATIIKHRME--VYYMVSVGSEKTWPW-WM---MIGG----LPADMHIRIGAYPIDYDR 289 (355)
T ss_pred HHHHHcCCC--EEEEEEeChhhcCCC-CC---ccCC----CCceEEEEECCCCCCCCC
Confidence 467788888 6898887 7787764 21 0100 11345577777 777654
No 41
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=23.23 E-value=81 Score=15.48 Aligned_cols=21 Identities=14% Similarity=-0.102 Sum_probs=16.0
Q ss_pred hhhhhhcCChHHHhhHHhhhh
Q 034696 57 ADIITASKNPEEVGWVITFCS 77 (86)
Q Consensus 57 ~~i~~~~e~~~~a~~a~s~~l 77 (86)
..+-...+|.++|.+.|.+++
T Consensus 8 g~~y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 8 GKIYEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 345566889999999997765
No 42
>PRK00014 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=22.94 E-value=32 Score=26.90 Aligned_cols=40 Identities=23% Similarity=0.390 Sum_probs=32.8
Q ss_pred CCCcceeeehhhcccCCCCChhhhhhhcceeeeeeeccee
Q 034696 9 GIPGHIYPLALLCHDIMPPPPQVEREVGEKRVISFHGAGL 48 (86)
Q Consensus 9 ~~ptHfyPlAL~tydImPPP~~vekeIGE~R~~~f~gvgl 48 (86)
..|||++||--.-.-++=-+-..|..+-=-|...+.|+|+
T Consensus 137 ~rPGHVfPL~a~~gGvl~R~GHTEAavdLa~lAGl~P~~v 176 (230)
T PRK00014 137 VSPGHVFPLRAQPGGVLTRRGHTEGSVDLAALAGLRPAGV 176 (230)
T ss_pred CCCCccceEEecCCCEecCCCccHHHHHHHHHcCCCceEE
Confidence 5899999998766667777788888887788888888886
No 43
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=21.73 E-value=72 Score=15.82 Aligned_cols=19 Identities=11% Similarity=-0.277 Sum_probs=13.8
Q ss_pred hhhhcCChHHHhhHHhhhh
Q 034696 59 IITASKNPEEVGWVITFCS 77 (86)
Q Consensus 59 i~~~~e~~~~a~~a~s~~l 77 (86)
+-..-++.++|.+.|.+++
T Consensus 10 ~~~~~~~~~~A~~~~~~al 28 (34)
T PF00515_consen 10 AYFQLGDYEEALEYYQRAL 28 (34)
T ss_dssp HHHHTT-HHHHHHHHHHHH
T ss_pred HHHHhCCchHHHHHHHHHH
Confidence 3355688899999998876
Done!