Query 034696
Match_columns 86
No_of_seqs 48 out of 50
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 08:46:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034696.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034696hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iuq_A Glycerol-3-phosphate ac 99.9 1E-25 3.5E-30 179.2 3.6 81 1-81 257-337 (367)
2 3sri_B Rhoptry NECK protein 2; 49.6 4.2 0.00014 22.2 0.3 9 23-31 14-22 (29)
3 3zwz_B RON2, rhoptry NECK prot 42.4 5.6 0.00019 23.0 0.1 12 20-31 16-28 (39)
4 3bww_A Protein of unknown func 35.4 7.7 0.00026 30.1 -0.1 30 30-59 46-77 (307)
5 3ozb_A Methylthioadenosine pho 34.3 12 0.00039 27.6 0.7 48 7-59 66-113 (259)
6 1v54_E Cytochrome C oxidase po 33.0 13 0.00044 25.4 0.8 44 19-67 36-79 (109)
7 4g6x_A Glyoxalase/bleomycin re 32.4 14 0.00049 22.9 0.9 34 44-77 7-48 (155)
8 2jrh_A Mitogen-activated prote 32.1 29 0.001 23.2 2.4 29 35-76 12-40 (94)
9 2cu1_A Mitogen-activated prote 31.9 27 0.00093 23.6 2.2 19 35-60 16-34 (103)
10 2cci_F Cell division control p 29.6 17 0.00059 19.9 0.8 27 24-50 2-28 (30)
11 1vmk_A Purine nucleoside phosp 28.7 17 0.00059 27.0 0.9 43 11-59 91-136 (277)
12 2c60_A Human mitogen-activated 26.9 42 0.0014 23.1 2.5 30 35-77 39-68 (111)
13 1tcv_A Purine-nucleoside phosp 25.9 21 0.00071 26.6 0.9 43 11-59 86-131 (287)
14 2y69_E Cytochrome C oxidase su 25.5 21 0.0007 25.7 0.8 45 19-68 79-123 (152)
15 1j8f_A SIRT2, sirtuin 2, isofo 23.0 33 0.0011 25.9 1.5 33 33-65 36-73 (323)
16 1tks_A 3,4-dihydroxy-2-butanon 21.9 18 0.00061 26.7 -0.2 45 9-54 124-168 (204)
17 3bbo_R Ribosomal protein L19; 21.7 19 0.00066 27.4 0.0 19 12-30 3-26 (233)
18 1q1a_A HST2 protein; ternary c 21.4 27 0.00092 25.6 0.7 34 32-65 12-50 (289)
No 1
>1iuq_A Glycerol-3-phosphate acyltransferase; open twisted alpha/beta, four helix bundle; 1.55A {Cucurbita moschata} SCOP: c.112.1.1 PDB: 1k30_A
Probab=99.91 E-value=1e-25 Score=179.22 Aligned_cols=81 Identities=65% Similarity=1.056 Sum_probs=69.3
Q ss_pred ChhhhhhcCCCcceeeehhhcccCCCCChhhhhhhcceeeeeeecceeeeccccchhhhhhhcCChHHHhhHHhhhhcce
Q 034696 1 MRRLAEHSGIPGHIYPLALLCHDIMPPPPQVEREVGEKRVISFHGAGLSVAPEISFADIITASKNPEEVGWVITFCSCIS 80 (86)
Q Consensus 1 mR~L~~~s~~ptHfyPlAL~tydImPPP~~vekeIGE~R~~~f~gvgls~g~EI~~~~i~~~~e~~~~a~~a~s~~ly~s 80 (86)
||+||+++|+|||+||+||.||||||||+||||++||+|.++|++|+|+++++|++++++.+++|++++++++++.+|++
T Consensus 257 ~~~LA~ksg~P~hIvPvaI~t~~imppp~~ve~~~g~~r~i~~~~V~v~ig~pI~~~~l~~~~e~~~e~~~~l~e~v~~~ 336 (367)
T 1iuq_A 257 MRRLIQHSDVPGHLFPLALLCHDIMPPPSQVEIEIGEKRVIAFNGAGLSVAPEISFEEIAATHKNPEEVREAYSKALFDS 336 (367)
T ss_dssp HHHHHHTSSSCEEEEEEEEECGGGSCCC----------CCCCCBCCEEEECCCCCHHHHHHTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCceEEEEEEEeccccCCcccccccccccceeecccEEEEECCccchhhccccccchHHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred e
Q 034696 81 L 81 (86)
Q Consensus 81 v 81 (86)
|
T Consensus 337 I 337 (367)
T 1iuq_A 337 V 337 (367)
T ss_dssp H
T ss_pred H
Confidence 6
No 2
>3sri_B Rhoptry NECK protein 2; AMA1, RON2, malaria, cell invasion; 1.60A {Plasmodium falciparum}
Probab=49.59 E-value=4.2 Score=22.23 Aligned_cols=9 Identities=44% Similarity=0.855 Sum_probs=7.2
Q ss_pred cCCCCChhh
Q 034696 23 DIMPPPPQV 31 (86)
Q Consensus 23 dImPPP~~v 31 (86)
-.||||+||
T Consensus 14 s~~~PPkqi 22 (29)
T 3sri_B 14 TRMSPPQQI 22 (29)
T ss_dssp ESSSSCCEE
T ss_pred cccCchHHH
Confidence 468999886
No 3
>3zwz_B RON2, rhoptry NECK protein 2; immune system, malaria, moving junction; 2.10A {Plasmodium falciparum}
Probab=42.39 E-value=5.6 Score=23.00 Aligned_cols=12 Identities=42% Similarity=0.899 Sum_probs=9.7
Q ss_pred hccc-CCCCChhh
Q 034696 20 LCHD-IMPPPPQV 31 (86)
Q Consensus 20 ~tyd-ImPPP~~v 31 (86)
.||- .||||+++
T Consensus 16 SC~ts~i~PPk~~ 28 (39)
T 3zwz_B 16 SCFTTRMSPPQQI 28 (39)
T ss_dssp SEEEESSSSCCEE
T ss_pred hhhhccCCcHHHH
Confidence 5776 89999886
No 4
>3bww_A Protein of unknown function DUF692/COG3220; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.20A {Haemophilus somnus}
Probab=35.35 E-value=7.7 Score=30.15 Aligned_cols=30 Identities=27% Similarity=0.251 Sum_probs=22.7
Q ss_pred hhhhhhcceeeeeeecceeeeccc--cchhhh
Q 034696 30 QVEREVGEKRVISFHGAGLSVAPE--ISFADI 59 (86)
Q Consensus 30 ~vekeIGE~R~~~f~gvgls~g~E--I~~~~i 59 (86)
..=.+|.|+.-+++||||+|+|.. +|.+-+
T Consensus 46 ~~L~~i~e~~Pl~~HGv~LSlG~~~pld~~~L 77 (307)
T 3bww_A 46 YQFDKVAEKIPILIHGLSLSLGGQAPLDKELL 77 (307)
T ss_dssp HHHHHHTTTSCEEEBCSCCCTTCSSCCCHHHH
T ss_pred HHHHHHHhcCCEEEeeccccccCCCCCCHHHH
Confidence 334578899999999999999865 554444
No 5
>3ozb_A Methylthioadenosine phosphorylase; 5'-methylthioinosine,phosphorylase, transferase; HET: HPA; 2.80A {Pseudomonas aeruginosa}
Probab=34.32 E-value=12 Score=27.56 Aligned_cols=48 Identities=15% Similarity=0.272 Sum_probs=31.0
Q ss_pred hcCCCcceeeehhhcccCCCCChhhhhhhcceeeeeeecceeeeccccchhhh
Q 034696 7 HSGIPGHIYPLALLCHDIMPPPPQVEREVGEKRVISFHGAGLSVAPEISFADI 59 (86)
Q Consensus 7 ~s~~ptHfyPlAL~tydImPPP~~vekeIGE~R~~~f~gvgls~g~EI~~~~i 59 (86)
+.|. +|.||..-.+|.. +-.+=+.+|=+++|+.+.+| ++.+++...++
T Consensus 66 rhG~-gh~~~~~~V~~~a---~i~~l~~~Gv~~II~tgaaG-gl~~~l~~GDl 113 (259)
T 3ozb_A 66 RHGH-PHRFPPHQVNYRA---NLWALKQAGAEAVIAVNAVG-GIHAAMGTGHL 113 (259)
T ss_dssp SSCC----CCGGGSCHHH---HHHHHHHHTCSEEEEEEEEE-ECSTTSCTTCE
T ss_pred CcCC-CcccChhhcchHH---HHHHHHHcCCCEEEEcccee-ecccccCCCCE
Confidence 3455 8888755555432 23455799999999998888 57777777664
No 6
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=33.03 E-value=13 Score=25.43 Aligned_cols=44 Identities=11% Similarity=0.219 Sum_probs=27.9
Q ss_pred hhcccCCCCChhhhhhhcceeeeeeecceeeeccccchhhhhhhcCChH
Q 034696 19 LLCHDIMPPPPQVEREVGEKRVISFHGAGLSVAPEISFADIITASKNPE 67 (86)
Q Consensus 19 L~tydImPPP~~vekeIGE~R~~~f~gvgls~g~EI~~~~i~~~~e~~~ 67 (86)
|..||+.|.|.-|+..+---|-+|=-+..+- -++.+-..|++.+
T Consensus 36 l~~~DlVP~P~ii~aaLrAcRRvND~alAVR-----~lE~iK~K~~~~~ 79 (109)
T 1v54_E 36 LVGYDLVPEPKIIDAALRACRRLNDFASAVR-----ILEVVKDKAGPHK 79 (109)
T ss_dssp HTTSSBCCCHHHHHHHHHHHHHTTCHHHHHH-----HHHHHHHHTTTCT
T ss_pred HhccccCCCcHHHHHHHHHHHHhhhHHHHHH-----HHHHHHHHhcCch
Confidence 5789999999999998866555542222221 1344555666654
No 7
>4g6x_A Glyoxalase/bleomycin resistance protein/dioxygena; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.73A {Catenulispora acidiphila}
Probab=32.43 E-value=14 Score=22.94 Aligned_cols=34 Identities=15% Similarity=0.153 Sum_probs=15.5
Q ss_pred ecceeeeccc-cchhh-------hhhhcCChHHHhhHHhhhh
Q 034696 44 HGAGLSVAPE-ISFAD-------IITASKNPEEVGWVITFCS 77 (86)
Q Consensus 44 ~gvgls~g~E-I~~~~-------i~~~~e~~~~a~~a~s~~l 77 (86)
|..|+++|.| +.|.+ ++....|.|+|++-|++.|
T Consensus 7 ~~~~~~~g~~nl~~~~~~Mri~~v~I~V~Dle~A~~FY~dvL 48 (155)
T 4g6x_A 7 HSSGVDLGTENLYFQSNAMRIHLTNVFVDDQAKAESFYTGKL 48 (155)
T ss_dssp ----------------CCCCCCEEEEEESCHHHHHHHHHHTT
T ss_pred cccCCCcCcccceeccCceEEEEEEEEeCCHHHHHHHHHHHh
Confidence 4556677666 34433 3445799999999999876
No 8
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=32.07 E-value=29 Score=23.19 Aligned_cols=29 Identities=28% Similarity=0.472 Sum_probs=19.0
Q ss_pred hcceeeeeeecceeeeccccchhhhhhhcCChHHHhhHHhhh
Q 034696 35 VGEKRVISFHGAGLSVAPEISFADIITASKNPEEVGWVITFC 76 (86)
Q Consensus 35 IGE~R~~~f~gvgls~g~EI~~~~i~~~~e~~~~a~~a~s~~ 76 (86)
=||+|.+.| .--+.|+++-. +++.||.|.
T Consensus 12 ~gEKRIi~f-------~RPvkf~dl~q------kv~~afGq~ 40 (94)
T 2jrh_A 12 NGERRIIAF-------SRPVKYEDVEH------KVTTVFGQP 40 (94)
T ss_dssp TTEEEEEEE-------CSSCCHHHHHH------HHHHHHCSS
T ss_pred cCceEEEec-------CCCccHHHHHH------HHHHHhCCe
Confidence 389999877 45677777733 355666554
No 9
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=31.91 E-value=27 Score=23.65 Aligned_cols=19 Identities=32% Similarity=0.674 Sum_probs=13.7
Q ss_pred hcceeeeeeecceeeeccccchhhhh
Q 034696 35 VGEKRVISFHGAGLSVAPEISFADII 60 (86)
Q Consensus 35 IGE~R~~~f~gvgls~g~EI~~~~i~ 60 (86)
=||+|++.| .--|.|+|+.
T Consensus 16 ~GEkRIi~f-------~RPv~f~eL~ 34 (103)
T 2cu1_A 16 RGEKRILQF-------PRPVKLEDLR 34 (103)
T ss_dssp TTEEEEEEE-------ESSCCHHHHH
T ss_pred cCeEEEEec-------cCCccHHHHH
Confidence 389999876 4567777773
No 10
>2cci_F Cell division control protein 6 homolog; complex (transferase/cell division), protein kinases, cell C recruitment, substrate recognition; HET: TPO ATP; 2.7A {Homo sapiens}
Probab=29.65 E-value=17 Score=19.88 Aligned_cols=27 Identities=22% Similarity=0.291 Sum_probs=20.7
Q ss_pred CCCCChhhhhhhcceeeeeeecceeee
Q 034696 24 IMPPPPQVEREVGEKRVISFHGAGLSV 50 (86)
Q Consensus 24 ImPPP~~vekeIGE~R~~~f~gvgls~ 50 (86)
.|-||+|-.||.|-.|.-.--|-+|.|
T Consensus 2 ~cSPpKq~kkengpp~~~t~kgrrLvF 28 (30)
T 2cci_F 2 HASPRKQGKKENGPPHSHTLKGRRLVF 28 (30)
T ss_pred CCCccccccccCCCCcccccccceeec
Confidence 477999999999999776665655554
No 11
>1vmk_A Purine nucleoside phosphorylase; TM1596, structural genomics protein structure initiative, PSI, joint center for structu genomics; HET: GUN; 2.01A {Thermotoga maritima} SCOP: c.56.2.1
Probab=28.73 E-value=17 Score=27.04 Aligned_cols=43 Identities=30% Similarity=0.471 Sum_probs=34.0
Q ss_pred Cccee---eehhhcccCCCCChhhhhhhcceeeeeeecceeeeccccchhhh
Q 034696 11 PGHIY---PLALLCHDIMPPPPQVEREVGEKRVISFHGAGLSVAPEISFADI 59 (86)
Q Consensus 11 ptHfy---PlAL~tydImPPP~~vekeIGE~R~~~f~gvgls~g~EI~~~~i 59 (86)
.||+| |.+..+| |-.+=+.+|=+++++.+.+| ++.+++...++
T Consensus 91 rgH~yeG~~p~~V~~-----~i~~l~~lGv~~II~tgaaG-~l~~~l~~GDl 136 (277)
T 1vmk_A 91 RFHLYEGHDPATVAF-----PVYLAKYVGVKGVVVTNAAG-AINPEFKPGEI 136 (277)
T ss_dssp CCCGGGTCCHHHHHH-----HHHHHHHHTCCEEEEEEEEE-ECSTTCCTTCE
T ss_pred CCcccCCCCHHHHHH-----HHHHHHHcCCCEEEEeccee-cCCCCCCCCCE
Confidence 36887 8888888 45667799999999998887 67777777664
No 12
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=26.90 E-value=42 Score=23.05 Aligned_cols=30 Identities=27% Similarity=0.433 Sum_probs=19.8
Q ss_pred hcceeeeeeecceeeeccccchhhhhhhcCChHHHhhHHhhhh
Q 034696 35 VGEKRVISFHGAGLSVAPEISFADIITASKNPEEVGWVITFCS 77 (86)
Q Consensus 35 IGE~R~~~f~gvgls~g~EI~~~~i~~~~e~~~~a~~a~s~~l 77 (86)
=||+|.+.| .--+.|+++-. +++.||.|.+
T Consensus 39 ~gEKRIiqf-------~RPvkf~dl~q------kv~~afGq~l 68 (111)
T 2c60_A 39 NGERRIIAF-------SRPVKYEDVEH------KVTTVFGQPL 68 (111)
T ss_dssp TTEEEEEEE-------CSSCCHHHHHH------HHHHHHSSCC
T ss_pred cCceEEEec-------CCCccHHHHHH------HHHHHhCCee
Confidence 499999887 45677777733 3556665543
No 13
>1tcv_A Purine-nucleoside phosphorylase; transferase; HET: NDS; 1.75A {Schistosoma mansoni} PDB: 1tcu_A* 1td1_A 3djf_A* 3e0q_A* 3e9r_A* 3e9z_A* 3f8w_A* 3faz_A* 3fb1_A* 3fnq_A* 3iex_A*
Probab=25.92 E-value=21 Score=26.55 Aligned_cols=43 Identities=21% Similarity=0.350 Sum_probs=31.3
Q ss_pred Cccee---eehhhcccCCCCChhhhhhhcceeeeeeecceeeeccccchhhh
Q 034696 11 PGHIY---PLALLCHDIMPPPPQVEREVGEKRVISFHGAGLSVAPEISFADI 59 (86)
Q Consensus 11 ptHfy---PlAL~tydImPPP~~vekeIGE~R~~~f~gvgls~g~EI~~~~i 59 (86)
.+|+| |.+..+| |-.+=+.+|=+++++.+.+| ++.+++...++
T Consensus 86 ~gH~yeG~~p~~V~~-----~i~~l~~lGv~~iI~tgaaG-~l~~~~~~GDl 131 (287)
T 1tcv_A 86 RFHMYEGYSNDTVAL-----PIRVMKLLGVKILMVSNAAG-GLNRSLKLGDF 131 (287)
T ss_dssp CCCGGGTCCHHHHHH-----HHHHHHHHTCCEEEEEEEEE-ECSTTCCTTCE
T ss_pred CCcccCCCCHHHHHH-----HHHHHHHcCCCEEEEeccee-ecCCCCCCCCE
Confidence 36777 7777777 45566799999999998887 56666665553
No 14
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=25.53 E-value=21 Score=25.71 Aligned_cols=45 Identities=13% Similarity=0.241 Sum_probs=28.2
Q ss_pred hhcccCCCCChhhhhhhcceeeeeeecceeeeccccchhhhhhhcCChHH
Q 034696 19 LLCHDIMPPPPQVEREVGEKRVISFHGAGLSVAPEISFADIITASKNPEE 68 (86)
Q Consensus 19 L~tydImPPP~~vekeIGE~R~~~f~gvgls~g~EI~~~~i~~~~e~~~~ 68 (86)
|..||+.|.|+-|+..+---|-+|=-+..+- -++.+-..|+|.++
T Consensus 79 l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR-----~lE~vK~K~~~~~~ 123 (152)
T 2y69_E 79 LVGYDLVPEPKIIDAALRACRRLNDFASAVR-----ILEVVKDKAGPHKE 123 (152)
T ss_dssp HTTSSBCCCHHHHHHHHHHHHHTTCHHHHHH-----HHHHHHHHTTTCTT
T ss_pred HhccccCCCcHHHHHHHHHHHHhhhHHHHHH-----HHHHHHHhcCCchh
Confidence 5689999999999998866555542222221 13445566666643
No 15
>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation, transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5
Probab=23.03 E-value=33 Score=25.86 Aligned_cols=33 Identities=33% Similarity=0.478 Sum_probs=24.9
Q ss_pred hhhcc---eeeeeeecceeeecccc-chhhh-hhhcCC
Q 034696 33 REVGE---KRVISFHGAGLSVAPEI-SFADI-ITASKN 65 (86)
Q Consensus 33 keIGE---~R~~~f~gvgls~g~EI-~~~~i-~~~~e~ 65 (86)
+-|-+ +|++-++|.|+|...-| ||-+- .+..++
T Consensus 36 ~~i~~~~a~~ivvltGAGiSt~SGIPdfR~~~~Glw~~ 73 (323)
T 1j8f_A 36 RYMQSERCRRVICLVGAGISTSAGIPDFRSPSTGLYDN 73 (323)
T ss_dssp HHHHSTTCCCEEEEECGGGTGGGTCCCTTCSCSTTSTT
T ss_pred HHHHhcCCCcEEEEecchhhHhhCCCcccCCCccHHHH
Confidence 35654 89999999999999988 88775 344443
No 16
>1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, 3,4-dihydroxy-2-B 4-phosphate synthase, synthetic gene, ISO; 1.60A {Candida albicans} SCOP: d.115.1.2 PDB: 1tku_A* 2ris_A 2riu_A*
Probab=21.86 E-value=18 Score=26.66 Aligned_cols=45 Identities=22% Similarity=0.254 Sum_probs=37.4
Q ss_pred CCCcceeeehhhcccCCCCChhhhhhhcceeeeeeecceeeecccc
Q 034696 9 GIPGHIYPLALLCHDIMPPPPQVEREVGEKRVISFHGAGLSVAPEI 54 (86)
Q Consensus 9 ~~ptHfyPlAL~tydImPPP~~vekeIGE~R~~~f~gvgls~g~EI 54 (86)
..|||++||--.--..+=-+-..|..+-=-|...+.|+|+- +|-+
T Consensus 124 ~rPGHvfPL~A~~gGvl~R~GHTEAavdLarLAGl~Pa~vi-cEi~ 168 (204)
T 1tks_A 124 IKPGHILPLRAVPGLLKKRRGHTEAAVQLSTLAGLQPAGVI-CELV 168 (204)
T ss_dssp EEEEEEEEEEECTTGGGTCCCHHHHHHHHHHHTTSCSBEEE-EEBB
T ss_pred CCCCCcceeeecCCCCccCCCcHHHHHHHHHHcCCCceEEE-EEEe
Confidence 47999999988777788888888888888999999999983 5444
No 17
>3bbo_R Ribosomal protein L19; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=21.71 E-value=19 Score=27.36 Aligned_cols=19 Identities=32% Similarity=0.504 Sum_probs=0.0
Q ss_pred cceeeehhhcccC-----CCCChh
Q 034696 12 GHIYPLALLCHDI-----MPPPPQ 30 (86)
Q Consensus 12 tHfyPlAL~tydI-----mPPP~~ 30 (86)
+|..|-||+++.. ||||++
T Consensus 3 ~~~l~~~~~~~~~~~~~~~~~~~~ 26 (233)
T 3bbo_R 3 SKVLPQALLVIPSNHSLQCPPLKK 26 (233)
T ss_dssp ------------------------
T ss_pred ccccchhhhccccccccCCCCChh
Confidence 4889999999998 998654
No 18
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Probab=21.41 E-value=27 Score=25.60 Aligned_cols=34 Identities=26% Similarity=0.289 Sum_probs=24.8
Q ss_pred hhhhcc---eeeeeeecceeeecccc-chhhhh-hhcCC
Q 034696 32 EREVGE---KRVISFHGAGLSVAPEI-SFADII-TASKN 65 (86)
Q Consensus 32 ekeIGE---~R~~~f~gvgls~g~EI-~~~~i~-~~~e~ 65 (86)
.+-|-+ +|++-++|.|+|...-| ||-+-. +-.++
T Consensus 12 ~~~i~~~~a~~ivvltGAGiSt~SGIPdfR~~~~Glw~~ 50 (289)
T 1q1a_A 12 AAHMKSNPNAKVIFMVGAGISTSCGIPDFRSPGTGLYHN 50 (289)
T ss_dssp HHHHHHSTTSCEEEEECGGGGGGGTCCCSSSTTTSGGGS
T ss_pred HHHHHhcCCCCEEEEECCceeHhhCCCCcCCCCCccccc
Confidence 344544 79999999999999988 887652 44443
Done!