Query 034697
Match_columns 86
No_of_seqs 111 out of 681
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 08:47:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034697.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034697hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cjj_A Radialis; plant develop 100.0 3.7E-29 1.3E-33 161.4 8.8 77 6-82 1-77 (93)
2 2cqq_A RSGI RUH-037, DNAJ homo 99.9 3.3E-26 1.1E-30 141.5 8.2 70 8-79 3-72 (72)
3 2cqr_A RSGI RUH-043, DNAJ homo 99.8 1.6E-21 5.5E-26 120.7 6.4 62 5-66 10-71 (73)
4 4eef_G F-HB80.4, designed hema 99.8 1E-22 3.6E-27 126.6 0.4 56 4-59 11-66 (74)
5 1wgx_A KIAA1903 protein; MYB D 99.8 5.7E-21 2E-25 118.6 5.3 57 10-66 5-61 (73)
6 2yum_A ZZZ3 protein, zinc fing 99.7 1.7E-17 5.9E-22 101.5 8.8 66 10-78 5-72 (75)
7 1x41_A Transcriptional adaptor 99.7 5.8E-17 2E-21 95.8 6.8 52 8-62 3-54 (60)
8 2yus_A SWI/SNF-related matrix- 99.7 9.5E-18 3.2E-22 104.8 3.5 61 8-72 13-74 (79)
9 2din_A Cell division cycle 5-l 99.6 3.9E-16 1.3E-20 93.5 7.0 57 10-71 6-62 (66)
10 1guu_A C-MYB, MYB proto-oncoge 99.6 3.9E-16 1.3E-20 89.4 6.6 47 13-62 3-49 (52)
11 2d9a_A B-MYB, MYB-related prot 99.6 4.3E-16 1.5E-20 91.6 6.6 52 8-62 3-54 (60)
12 2elk_A SPCC24B10.08C protein; 99.6 4.9E-16 1.7E-20 91.5 6.5 46 13-61 9-55 (58)
13 2cu7_A KIAA1915 protein; nucle 99.6 8.3E-16 2.8E-20 93.6 7.3 54 9-66 5-58 (72)
14 3sjm_A Telomeric repeat-bindin 99.6 1.4E-15 4.8E-20 91.5 7.2 55 6-63 4-60 (64)
15 1gvd_A MYB proto-oncogene prot 99.6 7E-16 2.4E-20 88.4 5.2 47 13-62 3-49 (52)
16 2dim_A Cell division cycle 5-l 99.6 3.4E-15 1.2E-19 90.2 6.6 50 10-62 6-55 (70)
17 1w0t_A Telomeric repeat bindin 99.6 5E-15 1.7E-19 85.3 6.9 47 13-62 2-50 (53)
18 1ity_A TRF1; helix-turn-helix, 99.5 2.5E-14 8.6E-19 86.3 7.5 51 10-63 7-59 (69)
19 2k9n_A MYB24; R2R3 domain, DNA 99.5 1.2E-13 4.2E-18 89.0 7.5 53 11-67 51-103 (107)
20 2eqr_A N-COR1, N-COR, nuclear 99.5 2.8E-13 9.5E-18 80.3 7.8 45 12-60 11-55 (61)
21 2llk_A Cyclin-D-binding MYB-li 99.5 1.1E-13 3.8E-18 85.4 5.7 51 9-64 19-69 (73)
22 2ltp_A Nuclear receptor corepr 99.2 9.1E-15 3.1E-19 92.6 0.0 54 8-65 11-64 (89)
23 1gv2_A C-MYB, MYB proto-oncoge 99.4 2.1E-13 7.3E-18 87.2 6.3 49 11-63 54-102 (105)
24 3osg_A MYB21; transcription-DN 99.4 3E-13 1E-17 89.5 7.0 52 11-66 60-111 (126)
25 2k9n_A MYB24; R2R3 domain, DNA 99.4 2.3E-13 7.7E-18 87.8 6.0 46 14-62 2-47 (107)
26 1gv2_A C-MYB, MYB proto-oncoge 99.4 1.9E-13 6.4E-18 87.4 5.2 47 12-61 3-49 (105)
27 1h8a_C AMV V-MYB, MYB transfor 99.4 4.9E-13 1.7E-17 88.3 6.6 50 10-62 24-73 (128)
28 3osg_A MYB21; transcription-DN 99.4 9E-13 3.1E-17 87.2 6.3 50 9-62 7-56 (126)
29 1h8a_C AMV V-MYB, MYB transfor 99.4 8.5E-13 2.9E-17 87.2 5.3 48 11-62 77-124 (128)
30 3zqc_A MYB3; transcription-DNA 99.3 5.3E-13 1.8E-17 88.7 3.6 46 14-62 3-48 (131)
31 2ckx_A NGTRF1, telomere bindin 99.3 3.2E-12 1.1E-16 80.5 6.8 48 14-64 1-52 (83)
32 3zqc_A MYB3; transcription-DNA 99.3 2.9E-12 1E-16 85.1 6.4 52 11-66 52-103 (131)
33 1h89_C C-MYB, MYB proto-oncoge 99.3 8E-12 2.8E-16 85.0 6.2 49 11-62 56-104 (159)
34 1h89_C C-MYB, MYB proto-oncoge 99.3 5.1E-12 1.7E-16 86.0 5.2 48 11-62 108-155 (159)
35 2aje_A Telomere repeat-binding 99.2 5.3E-11 1.8E-15 77.9 6.7 52 9-63 9-64 (105)
36 2iw5_B Protein corest, REST co 99.2 9.4E-11 3.2E-15 85.8 8.5 50 7-60 127-176 (235)
37 2yqk_A Arginine-glutamic acid 99.1 1.4E-10 4.8E-15 69.2 6.9 46 10-59 6-52 (63)
38 2roh_A RTBP1, telomere binding 99.1 1.4E-10 4.7E-15 77.7 7.3 49 12-63 30-82 (122)
39 2crg_A Metastasis associated p 99.1 2E-10 7E-15 69.9 6.9 47 9-59 4-51 (70)
40 2juh_A Telomere binding protei 99.1 8.9E-11 3E-15 78.5 5.5 51 11-64 15-69 (121)
41 1x58_A Hypothetical protein 49 99.1 3E-10 1E-14 68.4 6.7 53 8-64 3-58 (62)
42 1ign_A Protein (RAP1); RAP1,ye 99.1 6.1E-11 2.1E-15 87.3 4.2 53 12-64 7-61 (246)
43 4a69_C Nuclear receptor corepr 99.0 1.3E-09 4.4E-14 69.7 6.2 44 13-60 43-86 (94)
44 2xag_B REST corepressor 1; ami 98.7 4.5E-08 1.5E-12 77.7 8.6 46 11-60 378-423 (482)
45 1ug2_A 2610100B20RIK gene prod 98.7 1.7E-07 5.9E-12 60.2 8.5 55 13-68 33-87 (95)
46 3hm5_A DNA methyltransferase 1 98.6 1.4E-07 4.9E-12 60.5 7.3 52 14-69 31-87 (93)
47 1fex_A TRF2-interacting telome 98.5 1.9E-07 6.6E-12 55.0 5.8 49 13-61 2-56 (59)
48 2lr8_A CAsp8-associated protei 97.8 2.4E-08 8.2E-13 61.1 0.0 53 13-67 14-66 (70)
49 1ofc_X ISWI protein; nuclear p 98.3 1.3E-06 4.3E-11 65.9 5.7 51 12-65 109-159 (304)
50 2ebi_A DNA binding protein GT- 98.0 8.6E-06 2.9E-10 50.2 5.4 58 13-70 4-71 (86)
51 4iej_A DNA methyltransferase 1 97.9 5E-05 1.7E-09 48.6 7.4 51 14-68 31-86 (93)
52 1irz_A ARR10-B; helix-turn-hel 97.8 0.00015 5.2E-09 43.4 7.6 56 11-67 5-62 (64)
53 2xag_B REST corepressor 1; ami 97.7 6.6E-06 2.3E-10 65.3 0.0 43 13-59 189-231 (482)
54 4b4c_A Chromodomain-helicase-D 97.2 0.0013 4.3E-08 45.6 7.0 52 12-64 6-59 (211)
55 1ign_A Protein (RAP1); RAP1,ye 97.0 0.0021 7.3E-08 47.2 7.2 28 38-65 173-200 (246)
56 1ofc_X ISWI protein; nuclear p 96.9 0.0034 1.2E-07 47.2 7.3 55 12-66 211-277 (304)
57 2y9y_A Imitation switch protei 96.0 0.024 8E-07 43.8 7.3 56 11-66 226-293 (374)
58 2y9y_A Imitation switch protei 95.7 0.014 4.6E-07 45.1 5.0 47 13-62 123-170 (374)
59 4b4c_A Chromodomain-helicase-D 94.4 0.23 8E-06 34.0 7.9 52 12-66 133-198 (211)
60 2xb0_X Chromo domain-containin 92.6 0.42 1.4E-05 35.2 6.9 48 13-61 3-52 (270)
61 2hzd_A Transcriptional enhance 89.6 1.5 5.3E-05 27.0 6.3 54 12-65 5-75 (82)
62 2ecc_A Homeobox and leucine zi 86.2 3.8 0.00013 24.5 7.9 58 8-66 2-59 (76)
63 2xb0_X Chromo domain-containin 86.0 0.69 2.3E-05 34.0 3.6 29 13-44 168-196 (270)
64 2cxy_A BAF250B subunit, HBAF25 85.2 1.8 6.3E-05 27.8 5.1 45 37-81 73-122 (125)
65 1qgp_A Protein (double strande 81.3 5.2 0.00018 23.4 5.6 47 17-64 12-58 (77)
66 1qbj_A Protein (double-strande 80.0 5.8 0.0002 23.7 5.6 45 19-64 10-54 (81)
67 3i4p_A Transcriptional regulat 79.2 4.5 0.00015 26.3 5.3 41 20-64 4-44 (162)
68 2da6_A Hepatocyte nuclear fact 78.1 9.4 0.00032 24.1 6.3 55 12-66 9-83 (102)
69 2ly9_A Zinc fingers and homeob 77.6 7.7 0.00026 22.0 7.7 63 6-69 3-65 (74)
70 2o8x_A Probable RNA polymerase 77.2 6.7 0.00023 21.2 6.0 47 15-67 15-61 (70)
71 2dn0_A Zinc fingers and homeob 75.4 9.3 0.00032 21.9 8.7 60 7-67 6-65 (76)
72 1kkx_A Transcription regulator 74.1 5 0.00017 25.9 4.3 31 36-66 69-99 (123)
73 2cuf_A FLJ21616 protein; homeo 73.1 12 0.00043 22.3 8.1 59 12-70 10-82 (95)
74 3hug_A RNA polymerase sigma fa 72.5 11 0.00039 21.9 5.4 30 37-67 54-83 (92)
75 2lm1_A Lysine-specific demethy 72.2 9.3 0.00032 23.5 5.1 33 37-69 66-102 (107)
76 2jxj_A Histone demethylase jar 70.6 3 0.0001 25.3 2.5 30 37-66 58-91 (96)
77 2e1c_A Putative HTH-type trans 70.1 12 0.00042 24.6 5.7 42 19-64 27-68 (171)
78 1or7_A Sigma-24, RNA polymeras 70.1 14 0.0005 23.4 5.9 45 22-67 132-186 (194)
79 2ys8_A RAB-related GTP-binding 69.7 15 0.00051 21.8 6.5 50 11-66 7-56 (90)
80 2li6_A SWI/SNF chromatin-remod 69.5 3.1 0.00011 26.3 2.5 26 37-62 71-96 (116)
81 2eqy_A RBP2 like, jumonji, at 67.9 19 0.00064 22.9 6.0 35 36-70 63-101 (122)
82 2dbb_A Putative HTH-type trans 67.7 20 0.00068 22.5 6.4 40 21-64 11-50 (151)
83 2kk0_A AT-rich interactive dom 65.8 4.5 0.00015 26.7 2.7 38 37-74 86-128 (145)
84 3a02_A Homeobox protein arista 65.1 15 0.0005 20.0 6.2 51 13-64 3-53 (60)
85 3mzy_A RNA polymerase sigma-H 64.2 22 0.00074 21.6 6.0 31 36-67 124-154 (164)
86 2cyy_A Putative HTH-type trans 63.9 24 0.00083 22.1 6.0 40 21-64 9-48 (151)
87 2da4_A Hypothetical protein DK 63.6 19 0.00064 20.7 5.4 54 13-67 12-69 (80)
88 2da3_A Alpha-fetoprotein enhan 63.1 19 0.00064 20.5 5.0 53 13-66 21-73 (80)
89 1ig7_A Homeotic protein MSX-1; 62.9 16 0.00054 19.6 7.3 50 13-63 4-53 (58)
90 2cra_A Homeobox protein HOX-B1 61.6 19 0.00065 20.2 6.3 54 12-66 10-63 (70)
91 2cop_A Acyl-coenzyme A binding 60.5 20 0.00068 22.6 5.0 28 39-67 62-89 (109)
92 1i1g_A Transcriptional regulat 60.3 27 0.00091 21.4 5.7 40 21-64 6-45 (141)
93 2dms_A Homeobox protein OTX2; 60.2 22 0.00075 20.4 8.7 58 12-70 10-67 (80)
94 2dmt_A Homeobox protein BARH-l 59.9 23 0.00077 20.4 6.3 53 13-66 21-73 (80)
95 2cg4_A Regulatory protein ASNC 58.5 31 0.0011 21.6 6.0 40 21-64 10-49 (152)
96 1hbk_A ACBP, acyl-COA binding 58.4 11 0.00039 22.8 3.4 22 45-66 63-84 (89)
97 3epy_A Acyl-COA-binding domain 58.4 12 0.00041 22.8 3.6 23 45-67 63-85 (89)
98 2dmq_A LIM/homeobox protein LH 58.4 24 0.00081 20.2 7.4 54 12-66 10-63 (80)
99 2e19_A Transcription factor 8; 58.3 22 0.00076 19.9 5.8 54 9-63 3-56 (64)
100 2da1_A Alpha-fetoprotein enhan 57.9 22 0.00076 19.8 7.5 54 12-66 10-63 (70)
101 2jrz_A Histone demethylase jar 57.1 9.6 0.00033 24.1 3.1 31 36-66 61-95 (117)
102 1fs1_B SKP1, cyclin A/CDK2-ass 57.0 5.9 0.0002 25.6 2.1 20 40-59 115-134 (141)
103 2cue_A Paired box protein PAX6 56.9 26 0.00088 20.2 7.2 50 12-62 10-59 (80)
104 2p1m_A SKP1-like protein 1A; F 56.9 6.3 0.00021 26.0 2.2 20 40-59 119-138 (160)
105 2cb8_A Acyl-COA-binding protei 56.3 14 0.00047 22.4 3.6 23 45-67 61-83 (87)
106 2p5v_A Transcriptional regulat 55.8 34 0.0012 21.7 5.7 40 21-64 12-51 (162)
107 2k40_A Homeobox expressed in E 55.8 24 0.00082 19.5 6.4 54 13-67 5-58 (67)
108 1fse_A GERE; helix-turn-helix 55.3 23 0.00078 19.1 5.9 48 12-66 8-55 (74)
109 1ku3_A Sigma factor SIGA; heli 55.3 24 0.00084 19.4 6.3 50 15-66 10-59 (73)
110 3fp5_A Acyl-COA binding protei 55.1 14 0.00049 23.3 3.6 24 45-68 67-90 (106)
111 2h1k_A IPF-1, pancreatic and d 54.8 24 0.00083 19.3 7.1 54 12-66 6-59 (63)
112 1fjl_A Paired protein; DNA-bin 54.4 29 0.00098 19.9 7.2 54 12-66 21-74 (81)
113 1bw5_A ISL-1HD, insulin gene e 53.9 26 0.00089 19.3 6.1 51 12-63 6-56 (66)
114 1x3u_A Transcriptional regulat 53.8 26 0.00089 19.3 5.3 44 16-66 17-60 (79)
115 2hdd_A Protein (engrailed home 53.7 25 0.00085 19.0 6.8 51 12-63 6-56 (61)
116 2da2_A Alpha-fetoprotein enhan 53.7 27 0.00092 19.4 6.7 54 12-66 10-63 (70)
117 2p7v_B Sigma-70, RNA polymeras 53.6 25 0.00086 19.1 5.7 49 17-67 7-55 (68)
118 2pn6_A ST1022, 150AA long hypo 53.6 34 0.0012 21.2 5.3 40 21-64 5-44 (150)
119 1st7_A ACBP, acyl-COA-binding 53.5 11 0.00037 22.7 2.7 22 46-67 61-82 (86)
120 2lbb_A Acyl COA binding protei 53.2 15 0.00052 22.8 3.4 22 46-67 71-92 (96)
121 1je8_A Nitrate/nitrite respons 52.8 30 0.001 19.7 5.0 46 14-66 20-65 (82)
122 2ia0_A Putative HTH-type trans 52.4 34 0.0012 22.3 5.3 40 21-64 19-58 (171)
123 1akh_A Protein (mating-type pr 52.1 26 0.0009 18.8 5.4 48 13-61 9-56 (61)
124 3v7d_A Suppressor of kinetocho 50.9 11 0.00036 25.3 2.6 21 39-59 126-146 (169)
125 2djn_A Homeobox protein DLX-5; 50.5 31 0.0011 19.2 5.7 52 12-64 10-61 (70)
126 2wh5_A Acyl-COA-binding domain 50.4 20 0.00067 22.6 3.7 30 38-68 65-94 (106)
127 1zq3_P PRD-4, homeotic bicoid 49.8 32 0.0011 19.1 6.9 55 12-67 5-59 (68)
128 3flv_A Acyl-COA-binding domain 49.4 21 0.00072 23.1 3.8 23 45-67 87-109 (119)
129 2ast_A S-phase kinase-associat 49.0 9.1 0.00031 25.0 2.0 20 40-59 120-139 (159)
130 1c20_A DEAD ringer protein; DN 48.1 33 0.0011 21.7 4.6 35 37-71 74-113 (128)
131 1du6_A PBX1, homeobox protein 46.6 34 0.0012 18.6 5.3 48 12-60 6-56 (64)
132 1jgg_A Segmentation protein EV 46.4 34 0.0011 18.4 7.1 49 13-62 5-53 (60)
133 2cfx_A HTH-type transcriptiona 46.2 51 0.0017 20.5 5.7 40 21-64 7-46 (144)
134 2q1z_A RPOE, ECF SIGE; ECF sig 45.7 7.8 0.00027 24.6 1.2 30 37-67 152-181 (184)
135 1rp3_A RNA polymerase sigma fa 45.0 60 0.0021 20.9 6.4 31 36-67 203-233 (239)
136 1n00_A Annexin GH1; membrane-b 45.0 85 0.0029 22.7 6.9 66 1-70 1-75 (321)
137 2l7z_A Homeobox protein HOX-A1 44.8 41 0.0014 18.9 7.2 58 9-67 7-64 (73)
138 1e3o_C Octamer-binding transcr 44.7 63 0.0021 21.1 6.4 53 13-66 105-157 (160)
139 2dmp_A Zinc fingers and homeob 44.5 47 0.0016 19.6 8.6 56 14-70 18-73 (89)
140 1b72_A Protein (homeobox prote 44.5 48 0.0017 19.7 6.9 54 13-67 38-91 (97)
141 3ulq_B Transcriptional regulat 44.3 47 0.0016 19.5 5.5 47 13-66 27-73 (90)
142 3c57_A Two component transcrip 43.9 47 0.0016 19.4 5.9 47 14-67 26-72 (95)
143 1yz8_P Pituitary homeobox 2; D 43.7 41 0.0014 18.6 7.5 55 12-67 6-60 (68)
144 3b73_A PHIH1 repressor-like pr 42.4 60 0.0021 20.2 5.6 48 14-64 8-56 (111)
145 2cqu_A Peroxisomal D3,D2-enoyl 42.4 51 0.0017 21.0 4.8 22 46-67 76-97 (116)
146 2kt0_A Nanog, homeobox protein 42.4 48 0.0016 19.0 6.1 51 13-64 26-76 (84)
147 2e1o_A Homeobox protein PRH; D 42.2 44 0.0015 18.6 8.7 54 12-66 10-63 (70)
148 1p4w_A RCSB; solution structur 42.0 55 0.0019 19.7 5.9 46 13-65 32-77 (99)
149 1k61_A Mating-type protein alp 41.0 42 0.0014 18.0 6.5 49 14-63 3-54 (60)
150 1ig6_A MRF-2, modulator recogn 40.5 12 0.0004 23.1 1.4 26 37-62 55-85 (107)
151 1puf_A HOX-1.7, homeobox prote 40.2 50 0.0017 18.7 8.2 52 12-64 16-67 (77)
152 2dmu_A Homeobox protein goosec 40.1 48 0.0016 18.4 8.3 54 12-66 10-63 (70)
153 3kw6_A 26S protease regulatory 40.1 37 0.0013 19.0 3.6 37 22-58 10-46 (78)
154 3k2a_A Homeobox protein MEIS2; 40.1 49 0.0017 18.5 6.0 53 13-66 2-57 (67)
155 1tty_A Sigma-A, RNA polymerase 39.5 53 0.0018 18.8 6.0 31 36-67 38-68 (87)
156 2rnj_A Response regulator prot 38.8 42 0.0014 19.3 3.7 46 14-66 28-73 (91)
157 2xsd_C POU domain, class 3, tr 38.4 83 0.0029 20.7 5.9 54 13-67 103-156 (164)
158 2w25_A Probable transcriptiona 38.2 71 0.0024 19.8 5.3 40 21-64 9-48 (150)
159 1nk2_P Homeobox protein VND; h 38.1 55 0.0019 18.5 7.6 53 12-65 12-64 (77)
160 3a03_A T-cell leukemia homeobo 37.0 48 0.0017 17.6 6.4 48 14-62 2-49 (56)
161 1au7_A Protein PIT-1, GHF-1; c 36.7 84 0.0029 20.2 6.2 51 13-64 91-141 (146)
162 2d5v_A Hepatocyte nuclear fact 36.3 86 0.003 20.2 6.0 53 12-65 100-152 (164)
163 1b72_B Protein (PBX1); homeodo 35.9 63 0.0022 18.6 6.7 52 13-65 5-59 (87)
164 2da5_A Zinc fingers and homeob 34.6 64 0.0022 18.2 6.7 57 12-69 10-66 (75)
165 2jpc_A SSRB; DNA binding prote 34.5 51 0.0017 17.1 4.0 28 38-66 15-42 (61)
166 2vi6_A Homeobox protein nanog; 34.5 56 0.0019 17.6 5.7 49 13-62 7-55 (62)
167 3aji_B S6C, proteasome (prosom 34.3 47 0.0016 18.8 3.4 37 22-58 8-44 (83)
168 2r5y_A Homeotic protein sex co 34.3 70 0.0024 18.5 6.9 54 12-66 31-84 (88)
169 1wi9_A Protein C20ORF116 homol 33.5 14 0.00047 22.2 0.8 38 23-64 11-48 (72)
170 3eyi_A Z-DNA-binding protein 1 32.9 70 0.0024 19.1 4.0 42 17-61 8-49 (72)
171 2v79_A DNA replication protein 32.5 97 0.0033 19.7 6.2 46 17-63 31-77 (135)
172 1uhs_A HOP, homeodomain only p 31.7 69 0.0024 17.8 7.0 56 12-68 4-60 (72)
173 2rq5_A Protein jumonji; develo 31.5 47 0.0016 21.2 3.3 26 37-62 64-94 (121)
174 1oyi_A Double-stranded RNA-bin 31.2 70 0.0024 19.2 3.9 37 23-64 21-57 (82)
175 1ahd_P Antennapedia protein mu 30.3 73 0.0025 17.6 8.1 54 13-67 6-59 (68)
176 3a01_A Homeodomain-containing 29.9 89 0.003 18.4 7.6 54 13-67 21-74 (93)
177 2opa_A Probable tautomerase YW 29.5 64 0.0022 16.7 3.3 22 46-67 8-29 (61)
178 3d1n_I POU domain, class 6, tr 29.5 1.1E+02 0.0039 19.5 6.6 52 12-64 96-147 (151)
179 2h8r_A Hepatocyte nuclear fact 28.7 1.3E+02 0.0044 21.3 5.4 50 12-61 145-214 (221)
180 3nar_A ZHX1, zinc fingers and 28.6 95 0.0032 18.3 6.6 52 13-65 29-80 (96)
181 1otg_A 5-carboxymethyl-2-hydro 27.3 48 0.0016 20.7 2.7 24 45-68 67-90 (125)
182 2doe_A Transcription elongatio 27.3 1E+02 0.0034 18.2 6.4 48 22-69 21-75 (83)
183 1b8i_A Ultrabithorax, protein 27.2 93 0.0032 17.8 6.8 52 13-65 24-75 (81)
184 1ftt_A TTF-1 HD, thyroid trans 26.4 87 0.003 17.2 7.3 55 13-68 6-60 (68)
185 2m0c_A Homeobox protein arista 26.4 88 0.003 17.2 6.2 54 13-67 13-66 (75)
186 2hi3_A Homeodomain-only protei 26.1 91 0.0031 17.3 8.9 58 11-69 4-62 (73)
187 1otf_A 4-oxalocrotonate tautom 25.9 77 0.0026 16.4 3.3 23 45-67 7-29 (62)
188 1xsv_A Hypothetical UPF0122 pr 25.7 1.2E+02 0.004 18.4 6.5 29 37-66 42-70 (113)
189 1puf_B PRE-B-cell leukemia tra 25.6 92 0.0032 17.2 7.0 55 12-67 4-61 (73)
190 1oef_A Apolipoprotein E; glyco 25.5 61 0.0021 15.1 2.8 17 51-67 7-23 (26)
191 1oeg_A Apolipoprotein E; siali 24.7 35 0.0012 16.6 1.3 17 51-67 3-19 (26)
192 2da7_A Zinc finger homeobox pr 24.6 1.2E+02 0.0039 18.0 5.6 45 19-64 15-59 (71)
193 2krk_A 26S protease regulatory 24.5 48 0.0016 19.4 2.2 35 23-57 19-53 (86)
194 2lfw_A PHYR sigma-like domain; 24.3 1E+02 0.0034 19.2 3.9 31 36-67 109-139 (157)
195 1hfo_A Migration inhibitory fa 24.3 84 0.0029 18.6 3.4 22 45-66 63-84 (113)
196 3e7l_A Transcriptional regulat 24.3 93 0.0032 16.8 4.6 33 19-56 19-51 (63)
197 1txl_A Metal-binding protein Y 23.9 90 0.0031 22.2 3.9 33 36-68 74-107 (215)
198 1uiz_A MIF, macrophage migrati 23.9 89 0.003 18.6 3.4 23 45-67 64-86 (115)
199 3ezq_B Protein FADD; apoptosis 23.7 1.2E+02 0.0041 19.1 4.2 30 24-54 5-34 (122)
200 1s7o_A Hypothetical UPF0122 pr 23.7 1.3E+02 0.0045 18.3 6.5 47 15-67 22-68 (113)
201 1l0o_C Sigma factor; bergerat 23.7 17 0.00057 23.7 0.0 42 22-64 190-241 (243)
202 3e6q_A Putative 5-carboxymethy 23.4 77 0.0026 20.7 3.3 24 45-68 89-112 (146)
203 1x2n_A Homeobox protein pknox1 22.2 1.1E+02 0.0038 16.9 6.9 51 12-65 10-65 (73)
204 1uzc_A Hypothetical protein FL 21.7 1.3E+02 0.0043 17.4 3.8 24 23-46 20-43 (71)
205 1mnm_C Protein (MAT alpha-2 tr 21.6 1.3E+02 0.0043 17.3 6.7 50 12-62 30-82 (87)
206 2oy9_A UPF0223 protein BH2638; 21.3 1.6E+02 0.0055 18.4 4.9 38 13-61 10-48 (98)
207 2os5_A Acemif; macrophage migr 21.2 1.1E+02 0.0037 18.4 3.5 23 45-67 64-86 (119)
208 3gva_A Alkyltransferase-like p 20.9 1.7E+02 0.0057 18.5 4.4 35 21-55 7-42 (116)
209 2q0o_A Probable transcriptiona 20.8 1.9E+02 0.0065 19.1 5.7 46 14-66 174-219 (236)
210 1ntc_A Protein (nitrogen regul 20.8 1.3E+02 0.0046 17.3 4.5 35 20-59 52-86 (91)
211 1umq_A Photosynthetic apparatu 20.5 1.4E+02 0.0048 17.5 4.0 34 18-56 40-73 (81)
212 2dod_A Transcription elongatio 20.5 1.4E+02 0.0048 17.7 3.8 32 15-46 13-45 (82)
213 1ais_B TFB TFIIB, protein (tra 20.4 1.4E+02 0.0048 19.4 4.1 29 37-66 166-194 (200)
214 1wh5_A ZF-HD homeobox family p 20.3 1.4E+02 0.0046 17.2 7.6 48 13-61 21-72 (80)
215 3s1b_A Mini-Z; VEGF, cystine k 20.3 98 0.0033 15.6 2.7 9 52-60 3-11 (34)
No 1
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.96 E-value=3.7e-29 Score=161.39 Aligned_cols=77 Identities=65% Similarity=1.100 Sum_probs=62.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCCC
Q 034697 6 MTSSRSSGSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKDINDIEAGRYPHPNYRSTT 82 (86)
Q Consensus 6 ~~~~~~~~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~dv~~ie~g~v~~P~y~~~~ 82 (86)
|+||.++...||.|||++|++||++|+.+.++||.+||++|||||++||++||+.|++||+.||+|.||+|.|..+|
T Consensus 1 ~~~~~~~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~~iesg~vp~P~y~~~~ 77 (93)
T 2cjj_A 1 MASTRGSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVPFPNYRTTG 77 (93)
T ss_dssp -------CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHSSCCC-------
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC
Confidence 77888888999999999999999999988889999999999999999999999999999999999999999998765
No 2
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.93 E-value=3.3e-26 Score=141.48 Aligned_cols=70 Identities=24% Similarity=0.495 Sum_probs=64.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHhhhhcCCCCCCCCC
Q 034697 8 SSRSSGSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKDINDIEAGRYPHPNYR 79 (86)
Q Consensus 8 ~~~~~~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~dv~~ie~g~v~~P~y~ 79 (86)
+|+++...||.||+++|++||++||.++++||++||++| |||++||++||+.|++++ .|++|+||+|+|.
T Consensus 3 ~~~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d~-~~~~G~vp~P~~~ 72 (72)
T 2cqq_A 3 SGSSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSV-TCSPGMVSGPSSG 72 (72)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSC-CCCSCCCSCSCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHhc-CccCCCCCCCCCC
Confidence 455567799999999999999999999999999999999 899999999999999996 6899999999983
No 3
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.85 E-value=1.6e-21 Score=120.74 Aligned_cols=62 Identities=35% Similarity=0.598 Sum_probs=55.7
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Q 034697 5 TMTSSRSSGSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKDIN 66 (86)
Q Consensus 5 ~~~~~~~~~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~dv~ 66 (86)
+..-+.++...||.+||++|+.||.+|+++.++||.+||++|||||++||++||+.|++|+.
T Consensus 10 ~~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d~~ 71 (73)
T 2cqr_A 10 RKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVSGPS 71 (73)
T ss_dssp CCCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHSSCC
T ss_pred cccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHccc
Confidence 34445667789999999999999999998778999999999999999999999999998864
No 4
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=99.84 E-value=1e-22 Score=126.64 Aligned_cols=56 Identities=55% Similarity=0.956 Sum_probs=44.2
Q ss_pred CcCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHH
Q 034697 4 NTMTSSRSSGSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYE 59 (86)
Q Consensus 4 ~~~~~~~~~~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~ 59 (86)
.+|.||+.+...||.+|+++||+||++||+++++||++||++|||||++||+.||.
T Consensus 11 ~~m~s~~~ss~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 11 SHMASTRGSGRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp -----------CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred ceeccCCCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 57999998999999999999999999999999999999999999999999999996
No 5
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.83 E-value=5.7e-21 Score=118.58 Aligned_cols=57 Identities=25% Similarity=0.436 Sum_probs=51.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Q 034697 10 RSSGSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKDIN 66 (86)
Q Consensus 10 ~~~~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~dv~ 66 (86)
.+....||.+|+++|++||+.|+.++++||++||++|||||++||+.||..|.++..
T Consensus 5 ~~~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~~~ 61 (73)
T 1wgx_A 5 SSGDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRGKG 61 (73)
T ss_dssp CCSSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhccc
Confidence 344568999999999999999999999999999999999999999999999855543
No 6
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.7e-17 Score=101.46 Aligned_cols=66 Identities=24% Similarity=0.484 Sum_probs=53.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCC--CchHHHHHHHcCCCCHHHHHHHHHHHHHHHhhhhcCCCCCCCC
Q 034697 10 RSSGSSWTVKQNKQFETALAFYDKDT--PDRWDNVAKAVSGKTVEDVKKHYELLVKDINDIEAGRYPHPNY 78 (86)
Q Consensus 10 ~~~~~~WT~eEdk~Le~al~~~~~~~--~~rW~~IA~~vpgRT~~qc~~ry~~L~~dv~~ie~g~v~~P~y 78 (86)
......||.|||++|+++|.+|+.+. +.+|.+||++|||||..||++||.+++..+ +..| +++|.+
T Consensus 5 ~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~--~k~g-~~~pg~ 72 (75)
T 2yum_A 5 SSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKL--TKAG-IPVSGP 72 (75)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGG--STTC-SCCCCS
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHH--HhcC-CCCCCC
Confidence 44567999999999999999998643 279999999999999999999997766553 3455 467765
No 7
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.69 E-value=5.8e-17 Score=95.82 Aligned_cols=52 Identities=29% Similarity=0.454 Sum_probs=45.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHH
Q 034697 8 SSRSSGSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLV 62 (86)
Q Consensus 8 ~~~~~~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~ 62 (86)
+.+.....||.|||++|++++.+|+. .+|.+||+.|||||..||++||..++
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~---~~W~~Ia~~~~~Rt~~qcr~r~~~~l 54 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGF---GNWQDVANQMCTKTKEECEKHYMKYF 54 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCT---TCHHHHHHHHTTSCHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCc---CcHHHHHHHhCCCCHHHHHHHHHHHc
Confidence 33456789999999999999999974 48999999999999999999998764
No 8
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.69 E-value=9.5e-18 Score=104.83 Aligned_cols=61 Identities=25% Similarity=0.470 Sum_probs=53.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHH-HHHHhhhhcCC
Q 034697 8 SSRSSGSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELL-VKDINDIEAGR 72 (86)
Q Consensus 8 ~~~~~~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L-~~dv~~ie~g~ 72 (86)
........||.|||++|++||.+|+ ++|.+||++|||||..||+.||..+ ++|+..++++-
T Consensus 13 ~~~~~~~~WT~eEd~~Ll~~v~~~G----~~W~~IA~~v~~RT~~qcr~r~~~~~i~d~~~~~~~~ 74 (79)
T 2yus_A 13 KGASAGREWTEQETLLLLEALEMYK----DDWNKVSEHVGSRTQDECILHFLRLPIEDPYLENSDS 74 (79)
T ss_dssp CSSCCSCCCCHHHHHHHHHHHHHSS----SCHHHHHHHHSSCCHHHHHHHHTTSCCCCSSCCCCCC
T ss_pred cccccCCCcCHHHHHHHHHHHHHhC----CCHHHHHHHcCCCCHHHHHHHHHHhcccccccccCCC
Confidence 3445578999999999999999997 4899999999999999999999987 78877776653
No 9
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=3.9e-16 Score=93.48 Aligned_cols=57 Identities=18% Similarity=0.506 Sum_probs=51.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHhhhhcC
Q 034697 10 RSSGSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKDINDIEAG 71 (86)
Q Consensus 10 ~~~~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~dv~~ie~g 71 (86)
......||.|||++|..++..|+ .+|.+||+ ++|||..||++||..++.....+++|
T Consensus 6 ~~~k~~WT~eED~~L~~~~~~~g----~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~~ 62 (66)
T 2din_A 6 SGKKTEWSREEEEKLLHLAKLMP----TQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDSG 62 (66)
T ss_dssp SSSCCCCCHHHHHHHHHHHHHCT----TCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcC----CCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCCC
Confidence 34567999999999999999986 38999999 88999999999999999998888876
No 10
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.65 E-value=3.9e-16 Score=89.38 Aligned_cols=47 Identities=13% Similarity=0.410 Sum_probs=43.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHH
Q 034697 13 GSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLV 62 (86)
Q Consensus 13 ~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~ 62 (86)
.+.||.|||.+|..++.+|+. .+|..||+.|||||..||++||..++
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~~~Rt~~qcr~Rw~~~L 49 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGT---DDWKVIANYLPNRTDVQCQHRWQKVL 49 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCS---SCHHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHcCCCCHHHHHHHHHHHc
Confidence 568999999999999999974 37999999999999999999998865
No 11
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.64 E-value=4.3e-16 Score=91.65 Aligned_cols=52 Identities=15% Similarity=0.373 Sum_probs=45.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHH
Q 034697 8 SSRSSGSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLV 62 (86)
Q Consensus 8 ~~~~~~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~ 62 (86)
+.......||.|||++|..++.+|+. .+|..||+.|||||..||++||..++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~~~Rt~~qcr~Rw~~~l 54 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQ---QDWKFLASHFPNRTDQQCQYRWLRVL 54 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCT---TCHHHHHHHCSSSCHHHHHHHHHHTS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHccCCCHHHHHHHHHHHc
Confidence 34456789999999999999999963 47999999999999999999998754
No 12
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.64 E-value=4.9e-16 Score=91.46 Aligned_cols=46 Identities=20% Similarity=0.400 Sum_probs=42.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHH
Q 034697 13 GSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVS-GKTVEDVKKHYELL 61 (86)
Q Consensus 13 ~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vp-gRT~~qc~~ry~~L 61 (86)
...||.+||++|.+++.+|+. .+|..||+.|| |||+.||++||..+
T Consensus 9 ~~~WT~eED~~L~~~v~~~G~---~~W~~IA~~~~~~Rt~~qcr~r~~~~ 55 (58)
T 2elk_A 9 DENWGADEELLLIDACETLGL---GNWADIADYVGNARTKEECRDHYLKT 55 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTTT---TCHHHHHHHHCSSCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 568999999999999999974 48999999999 99999999999875
No 13
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.63 E-value=8.3e-16 Score=93.60 Aligned_cols=54 Identities=28% Similarity=0.519 Sum_probs=47.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Q 034697 9 SRSSGSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKDIN 66 (86)
Q Consensus 9 ~~~~~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~dv~ 66 (86)
.......||.|||.+|+.++.+|+. +|..||++|||||..||++||..++....
T Consensus 5 p~~~~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~ 58 (72)
T 2cu7_A 5 SSGYSVKWTIEEKELFEQGLAKFGR----RWTKISKLIGSRTVLQVKSYARQYFKNKV 58 (72)
T ss_dssp CSSCCCCCCHHHHHHHHHHHHHTCS----CHHHHHHHHSSSCHHHHHHHHHHHHHHHS
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 3446789999999999999999964 89999999999999999999998876644
No 14
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.62 E-value=1.4e-15 Score=91.46 Aligned_cols=55 Identities=18% Similarity=0.458 Sum_probs=44.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcC--CCCHHHHHHHHHHHHH
Q 034697 6 MTSSRSSGSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVS--GKTVEDVKKHYELLVK 63 (86)
Q Consensus 6 ~~~~~~~~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vp--gRT~~qc~~ry~~L~~ 63 (86)
|++..+....||+|||++|..+|.+|+.+ +|..||+.+| |||..||++||..|..
T Consensus 4 ~~~~~~kk~~WT~eED~~L~~~V~~~G~~---~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k 60 (64)
T 3sjm_A 4 MTTNITKKQKWTVEESEWVKAGVQKYGEG---NWAAISKNYPFVNRTAVMIKDRWRTMKR 60 (64)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHHCTT---CHHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHccCCC---chHHHHhhcCCCCCCHHHHHHHHHHHhc
Confidence 45555667899999999999999999743 7999999987 9999999999998753
No 15
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.61 E-value=7e-16 Score=88.42 Aligned_cols=47 Identities=17% Similarity=0.480 Sum_probs=42.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHH
Q 034697 13 GSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLV 62 (86)
Q Consensus 13 ~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~ 62 (86)
.+.||.|||.+|..++.+|+. .+|..||+.|||||..||++||..++
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~~~Rt~~qcr~Rw~~~L 49 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGP---KRWSVIAKHLKGRIGKQCRERWHNHL 49 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCT---TCHHHHHTTSTTCCHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHCc---ChHHHHHHHcCCCCHHHHHHHHHHHc
Confidence 568999999999999999974 37999999999999999999998753
No 16
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=3.4e-15 Score=90.25 Aligned_cols=50 Identities=18% Similarity=0.469 Sum_probs=44.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHH
Q 034697 10 RSSGSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLV 62 (86)
Q Consensus 10 ~~~~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~ 62 (86)
......||.|||++|..++.+|+. .+|..||+.|||||..||++||..++
T Consensus 6 ~~k~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~l~~Rt~~qcr~Rw~~~L 55 (70)
T 2dim_A 6 SGKGGVWRNTEDEILKAAVMKYGK---NQWSRIASLLHRKSAKQCKARWYEWL 55 (70)
T ss_dssp CSTTCCCCHHHHHHHHHHHHHTCS---SCHHHHHHHSTTCCHHHHHHHHHHTS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHhcCCCHHHHHHHHHHHc
Confidence 335679999999999999999973 48999999999999999999998754
No 17
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.58 E-value=5e-15 Score=85.33 Aligned_cols=47 Identities=13% Similarity=0.391 Sum_probs=43.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcC--CCCHHHHHHHHHHHH
Q 034697 13 GSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVS--GKTVEDVKKHYELLV 62 (86)
Q Consensus 13 ~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vp--gRT~~qc~~ry~~L~ 62 (86)
...||+|||.+|..++.+|+. .+|..||+.|| |||..||++||..++
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~ 50 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGE---GNWSKILLHYKFNNRTSVMLKDRWRTMK 50 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCT---TCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 468999999999999999974 48999999999 999999999999875
No 18
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.54 E-value=2.5e-14 Score=86.26 Aligned_cols=51 Identities=14% Similarity=0.377 Sum_probs=45.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcC--CCCHHHHHHHHHHHHH
Q 034697 10 RSSGSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVS--GKTVEDVKKHYELLVK 63 (86)
Q Consensus 10 ~~~~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vp--gRT~~qc~~ry~~L~~ 63 (86)
......||.|||.+|..++.+|+. .+|..||+.|| |||..||++||..++.
T Consensus 7 ~~~r~~WT~eED~~L~~~v~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~ 59 (69)
T 1ity_A 7 ARKRQAWLWEEDKNLRSGVRKYGE---GNWSKILLHYKFNNRTSVMLKDRWRTMKK 59 (69)
T ss_dssp SSSCCCCCHHHHHHHHHHHHHHCS---SCHHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCC---CcHHHHHHHcCcCCCCHHHHHHHHHHHcC
Confidence 345679999999999999999974 48999999999 9999999999987654
No 19
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.48 E-value=1.2e-13 Score=89.01 Aligned_cols=53 Identities=9% Similarity=0.448 Sum_probs=47.6
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Q 034697 11 SSGSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKDIND 67 (86)
Q Consensus 11 ~~~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~dv~~ 67 (86)
...++||.|||.+|..++.+|+ .+|..||+.|||||..||++||..|...+..
T Consensus 51 i~~~~WT~eEd~~L~~~~~~~G----~~W~~Ia~~l~gRt~~~~k~rw~~l~r~~~~ 103 (107)
T 2k9n_A 51 LRTDPWSPEEDMLLDQKYAEYG----PKWNKISKFLKNRSDNNIRNRWMMIARHRAK 103 (107)
T ss_dssp CTTCCCCHHHHHHHHHHHHHTC----SCHHHHHHHHSSSCHHHHHHHHHHHHHHHHS
T ss_pred ccccccCHHHHHHHHHHHHHhC----cCHHHHHHHCCCCCHHHHHHHHHHHHhhHHH
Confidence 3567999999999999999996 3799999999999999999999998877654
No 20
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=2.8e-13 Score=80.35 Aligned_cols=45 Identities=22% Similarity=0.278 Sum_probs=41.4
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHH
Q 034697 12 SGSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYEL 60 (86)
Q Consensus 12 ~~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~ 60 (86)
....||++|+++|++++.+||+ +|.+||..|||||+.||+.+|..
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk----~w~~Ia~~l~~rt~~~~v~~Yy~ 55 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPK----NFGLIASYLERKSVPDCVLYYYL 55 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTT----CHHHHHHHCTTSCHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHhCC----CHHHHHHHcCCCCHHHHHHHHHH
Confidence 5689999999999999999974 69999999999999999999864
No 21
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.45 E-value=1.1e-13 Score=85.43 Aligned_cols=51 Identities=16% Similarity=0.337 Sum_probs=44.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 034697 9 SRSSGSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKD 64 (86)
Q Consensus 9 ~~~~~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~d 64 (86)
.....++||+|||++|.+++.+|+. +|..||+.| |||..||++||..|..+
T Consensus 19 P~i~k~~wT~EED~~L~~l~~~~G~----kW~~IA~~l-gRt~~q~knRw~~L~~~ 69 (73)
T 2llk_A 19 DRNHVGKYTPEEIEKLKELRIKHGN----DWATIGAAL-GRSASSVKDRCRLMKDT 69 (73)
T ss_dssp CCCCCCSSCHHHHHHHHHHHHHHSS----CHHHHHHHH-TSCHHHHHHHHHHCSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCC----CHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 3456789999999999999999963 599999999 99999999999977543
No 22
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.16 E-value=9.1e-15 Score=92.61 Aligned_cols=54 Identities=22% Similarity=0.284 Sum_probs=46.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 034697 8 SSRSSGSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKDI 65 (86)
Q Consensus 8 ~~~~~~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~dv 65 (86)
+.....+.||.|||.+|..++.+|+. +|..||.+|||||..||++||..++..+
T Consensus 11 ~p~~~~~~WT~eEd~~l~~~~~~~G~----~W~~IA~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 11 RENLYFQGWTEEEMGTAKKGLLEHGR----NWSAIARMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 33445789999999999999999963 7999999999999999999998765543
No 23
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.43 E-value=2.1e-13 Score=87.17 Aligned_cols=49 Identities=24% Similarity=0.529 Sum_probs=44.2
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Q 034697 11 SSGSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVK 63 (86)
Q Consensus 11 ~~~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~ 63 (86)
...++||.|||.+|..++.+|+ .+|..||++|||||..||++||..++.
T Consensus 54 ~~~~~Wt~eEd~~L~~~~~~~G----~~W~~Ia~~l~gRt~~~~k~rw~~~~~ 102 (105)
T 1gv2_A 54 VKKTSWTEEEDRIIYQAHKRLG----NRWAEIAKLLPGRTDNAIKNHWNSTMR 102 (105)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHS----SCHHHHHTTCTTCCHHHHHHHHHHHTC
T ss_pred ccccCCCHHHHHHHHHHHHHhC----CCHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 4567999999999999999996 479999999999999999999997653
No 24
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.43 E-value=3e-13 Score=89.48 Aligned_cols=52 Identities=19% Similarity=0.436 Sum_probs=47.1
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Q 034697 11 SSGSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKDIN 66 (86)
Q Consensus 11 ~~~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~dv~ 66 (86)
...+.||.|||++|..++.+|+ .+|..||+.|||||..||++||..|...+.
T Consensus 60 ~~~~~WT~eEd~~L~~~v~~~G----~~W~~Ia~~l~gRt~~~~k~rw~~l~~k~~ 111 (126)
T 3osg_A 60 ISHTPWTAEEDALLVQKIQEYG----RQWAIIAKFFPGRTDIHIKNRWVTISNKLG 111 (126)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHC----SCHHHHHTTSTTCCHHHHHHHHHHHHHHTT
T ss_pred cccccCCHHHHHHHHHHHHHHC----cCHHHHHHHcCCCCHHHHHHHHHHHHHhcC
Confidence 3467999999999999999996 479999999999999999999999988755
No 25
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.43 E-value=2.3e-13 Score=87.78 Aligned_cols=46 Identities=7% Similarity=0.307 Sum_probs=42.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHH
Q 034697 14 SSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLV 62 (86)
Q Consensus 14 ~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~ 62 (86)
+.||.|||.+|..++.+|+. .+|..||+.|||||..||++||..++
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~---~~W~~Ia~~~~~Rt~~qcr~Rw~~~L 47 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGA---KDWIRISQLMITRNPRQCRERWNNYI 47 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCS---SCHHHHHHHTTTSCHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHCC---CCHHHHhhhcCCCCHHHHHHHHHHHH
Confidence 58999999999999999974 47999999999999999999998753
No 26
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.42 E-value=1.9e-13 Score=87.42 Aligned_cols=47 Identities=17% Similarity=0.441 Sum_probs=42.8
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHH
Q 034697 12 SGSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELL 61 (86)
Q Consensus 12 ~~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L 61 (86)
..+.||.|||++|..++.+|+. .+|..||+.|||||..||++||..+
T Consensus 3 ~k~~WT~eED~~L~~~v~~~g~---~~W~~Ia~~l~~Rt~~qcr~Rw~~~ 49 (105)
T 1gv2_A 3 IKGPWTKEEDQRVIKLVQKYGP---KRWSVIAKHLKGRIGKQCRERWHNH 49 (105)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCT---TCHHHHHTTSTTCCHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHhCC---CcHHHHhhhhcCCCHHHHHHHHHhc
Confidence 3578999999999999999974 4799999999999999999999874
No 27
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.40 E-value=4.9e-13 Score=88.33 Aligned_cols=50 Identities=16% Similarity=0.464 Sum_probs=44.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHH
Q 034697 10 RSSGSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLV 62 (86)
Q Consensus 10 ~~~~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~ 62 (86)
....+.||.|||++|..++.+|+. .+|..||+.|||||..||++||..++
T Consensus 24 ~~~k~~Wt~eED~~L~~~v~~~g~---~~W~~Ia~~l~~Rt~~qcr~Rw~~~l 73 (128)
T 1h8a_C 24 ELNKGPWTKEEDQRVIEHVQKYGP---KRWSDIAKHLKGRIGKQCRERWHNHL 73 (128)
T ss_dssp TCCCSCCCHHHHHHHHHHHHHTCS---CCHHHHHHHSSSCCHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCC---CCHHHHHHHhcCCcHHHHHHHHHHhc
Confidence 345689999999999999999974 47999999999999999999998743
No 28
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.37 E-value=9e-13 Score=87.20 Aligned_cols=50 Identities=10% Similarity=0.307 Sum_probs=44.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHH
Q 034697 9 SRSSGSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLV 62 (86)
Q Consensus 9 ~~~~~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~ 62 (86)
.....+.||.|||++|..++.+|+. +|..||+.|||||..||++||..++
T Consensus 7 ~~~kk~~WT~eED~~L~~~v~~~G~----~W~~Ia~~~~~Rt~~qcr~Rw~~~l 56 (126)
T 3osg_A 7 KAAKKQKFTPEEDEMLKRAVAQHGS----DWKMIAATFPNRNARQCRDRWKNYL 56 (126)
T ss_dssp CBCSSCCCCHHHHHHHHHHHHHHTT----CHHHHHHTCTTCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC----CHHHHHHHcCCCCHHHHHHHHhhhc
Confidence 3445689999999999999999963 7999999999999999999998753
No 29
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.35 E-value=8.5e-13 Score=87.16 Aligned_cols=48 Identities=27% Similarity=0.523 Sum_probs=43.7
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHH
Q 034697 11 SSGSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLV 62 (86)
Q Consensus 11 ~~~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~ 62 (86)
...++||.|||.+|..++.+|+ .+|..||+.|||||..||++||..++
T Consensus 77 ~~~~~WT~eEd~~L~~~~~~~G----~~W~~Ia~~l~gRt~~~~k~r~~~~~ 124 (128)
T 1h8a_C 77 VKKTSWTEEEDRIIYQAHKRLG----NRWAEIAKLLPGRTDNAVKNHWNSTM 124 (128)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHC----SCHHHHGGGSTTCCHHHHHHHHHTTT
T ss_pred cccccCCHHHHHHHHHHHHHHC----cCHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 3567999999999999999996 47999999999999999999998764
No 30
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.34 E-value=5.3e-13 Score=88.69 Aligned_cols=46 Identities=4% Similarity=0.200 Sum_probs=42.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHH
Q 034697 14 SSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLV 62 (86)
Q Consensus 14 ~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~ 62 (86)
+.||.|||++|..++.+|+. .+|..||+.|||||..||++||..++
T Consensus 3 g~Wt~eED~~L~~~v~~~g~---~~W~~Ia~~~~~Rt~~qcr~Rw~~~l 48 (131)
T 3zqc_A 3 GPFTEAEDDLIREYVKENGP---QNWPRITSFLPNRSPKQCRERWFNHL 48 (131)
T ss_dssp SSCCHHHHHHHHHHHHHHCS---CCGGGGTTSCTTSCHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhCc---CCHHHHHHHHCCCCHHHHHHHHhhcc
Confidence 68999999999999999974 47999999999999999999997653
No 31
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.33 E-value=3.2e-12 Score=80.50 Aligned_cols=48 Identities=21% Similarity=0.412 Sum_probs=43.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCchHHHHHHH----cCCCCHHHHHHHHHHHHHH
Q 034697 14 SSWTVKQNKQFETALAFYDKDTPDRWDNVAKA----VSGKTVEDVKKHYELLVKD 64 (86)
Q Consensus 14 ~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~----vpgRT~~qc~~ry~~L~~d 64 (86)
.+||.|||..|..++.+|+.+ +|..|++. ++|||..||++||..++..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g---~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~ 52 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTG---RWRDVKMRAFDNADHRTYVDLKDKWKTLVHT 52 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSS---CHHHHHHHHCTTCTTSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCC---CcHHHHHhhccccCCCCHHHHHHHHHHHHHh
Confidence 379999999999999999754 89999996 8999999999999998753
No 32
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.32 E-value=2.9e-12 Score=85.10 Aligned_cols=52 Identities=15% Similarity=0.350 Sum_probs=45.9
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Q 034697 11 SSGSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKDIN 66 (86)
Q Consensus 11 ~~~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~dv~ 66 (86)
...+.||.|||.+|..++.+|+ .+|..||+.|||||..||++||..++....
T Consensus 52 ~~~~~Wt~eEd~~L~~~~~~~G----~~W~~Ia~~l~gRt~~~~k~rw~~~l~~~~ 103 (131)
T 3zqc_A 52 VVKHAWTPEEDETIFRNYLKLG----SKWSVIAKLIPGRTDNAIKNRWNSSISKRI 103 (131)
T ss_dssp CCCSCCCHHHHHHHHHHHHHSC----SCHHHHTTTSTTCCHHHHHHHHHHTTGGGC
T ss_pred ccCCCCCHHHHHHHHHHHHHHC----cCHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 3457899999999999999996 479999999999999999999998765543
No 33
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.26 E-value=8e-12 Score=84.97 Aligned_cols=49 Identities=16% Similarity=0.421 Sum_probs=43.9
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHH
Q 034697 11 SSGSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLV 62 (86)
Q Consensus 11 ~~~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~ 62 (86)
...++||.|||.+|..++.+|+. .+|..||+.|||||..||++||..++
T Consensus 56 ~~~~~Wt~eEd~~L~~~v~~~g~---~~W~~Ia~~l~~Rt~~qcr~Rw~~~l 104 (159)
T 1h89_C 56 LIKGPWTKEEDQRVIKLVQKYGP---KRWSVIAKHLKGRIGKQCRERWHNHL 104 (159)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHCS---CCHHHHHHTSTTCCHHHHHHHHHHTT
T ss_pred cCCCCCChHHHHHHHHHHHHhCc---ccHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 35689999999999999999974 47999999999999999999998743
No 34
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.26 E-value=5.1e-12 Score=85.97 Aligned_cols=48 Identities=25% Similarity=0.521 Sum_probs=43.8
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHH
Q 034697 11 SSGSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLV 62 (86)
Q Consensus 11 ~~~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~ 62 (86)
....+||.+||.+|..++.+|+ .+|..||++|||||..||++||..++
T Consensus 108 ~~~~~WT~eEd~~L~~~~~~~g----~~W~~Ia~~l~gRt~~~~knr~~~~~ 155 (159)
T 1h89_C 108 VKKTSWTEEEDRIIYQAHKRLG----NRWAEIAKLLPGRTDNAIKNHWNSTM 155 (159)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHC----SCHHHHHTTSTTCCHHHHHHHHHTTT
T ss_pred ccccCCChHHHHHHHHHHHHHC----CCHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 4567999999999999999996 47999999999999999999998764
No 35
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.18 E-value=5.3e-11 Score=77.88 Aligned_cols=52 Identities=21% Similarity=0.376 Sum_probs=46.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHc----CCCCHHHHHHHHHHHHH
Q 034697 9 SRSSGSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAV----SGKTVEDVKKHYELLVK 63 (86)
Q Consensus 9 ~~~~~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~v----pgRT~~qc~~ry~~L~~ 63 (86)
..-...+||.|||..|..++.+|+.+ +|..|++.+ +|||..+|++||..|+.
T Consensus 9 ~rr~r~~WT~EEd~~L~~gV~k~G~g---~W~~I~~~~~~~f~~RT~v~lKdrWrnllk 64 (105)
T 2aje_A 9 QRRIRRPFSVAEVEALVQAVEKLGTG---RWRDVKLCAFEDADHRTYVDLKDKWKTLVH 64 (105)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHHCSS---SHHHHHSSSSSSTTCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCC---ChHHHHHHhccccCCCCHHHHHHHHHHHHh
Confidence 34457899999999999999999754 899999976 89999999999999884
No 36
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=99.17 E-value=9.4e-11 Score=85.78 Aligned_cols=50 Identities=16% Similarity=0.345 Sum_probs=44.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHH
Q 034697 7 TSSRSSGSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYEL 60 (86)
Q Consensus 7 ~~~~~~~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~ 60 (86)
..+......||.||.++|++||.+|++ +|..||+.|||||+.||+.+|..
T Consensus 127 e~~~k~s~~WTeEE~~lFleAl~kYGK----DW~~IAk~VgTKT~~QcKnfY~~ 176 (235)
T 2iw5_B 127 EVIQKCNARWTTEEQLLAVQAIRKYGR----DFQAISDVIGNKSVVQVKNFFVN 176 (235)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHHSS----CHHHHHHHHSSCCHHHHHHHHHH
T ss_pred CCCCccCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHcCCCCHHHHHHHHHH
Confidence 334455779999999999999999975 59999999999999999999975
No 37
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=1.4e-10 Score=69.16 Aligned_cols=46 Identities=22% Similarity=0.374 Sum_probs=41.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCchHHHHHH-HcCCCCHHHHHHHHH
Q 034697 10 RSSGSSWTVKQNKQFETALAFYDKDTPDRWDNVAK-AVSGKTVEDVKKHYE 59 (86)
Q Consensus 10 ~~~~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~-~vpgRT~~qc~~ry~ 59 (86)
......||++|.++|+++|.+|++ .|.+||+ .||+||..||...|.
T Consensus 6 ~~~~~~WT~eE~~~Fe~~l~~yGK----df~~I~~~~v~~Kt~~~~v~fYY 52 (63)
T 2yqk_A 6 SGIEKCWTEDEVKRFVKGLRQYGK----NFFRIRKELLPNKETGELITFYY 52 (63)
T ss_dssp CCCCCSCCHHHHHHHHHHHHHTCS----CHHHHHHHSCTTSCHHHHHHHHH
T ss_pred CcCCCCcCHHHHHHHHHHHHHhCc----cHHHHHHHHcCCCcHHHHHHHHh
Confidence 345679999999999999999986 4999999 599999999999885
No 38
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.14 E-value=1.4e-10 Score=77.74 Aligned_cols=49 Identities=22% Similarity=0.365 Sum_probs=44.4
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHc----CCCCHHHHHHHHHHHHH
Q 034697 12 SGSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAV----SGKTVEDVKKHYELLVK 63 (86)
Q Consensus 12 ~~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~v----pgRT~~qc~~ry~~L~~ 63 (86)
....||.|||..|.+++.+|+.+ +|..|++.. +|||..||++||..++.
T Consensus 30 ~r~~WT~EEd~~L~~gV~k~G~g---~W~~I~~~~~~~~~~RT~vdlKdRWrnllk 82 (122)
T 2roh_A 30 IRRPFTVAEVELLVEAVEHLGTG---RWRDVKFRAFENVHHRTYVDLKDKWKTLVH 82 (122)
T ss_dssp CCCCCCHHHHHHHHHHHHHHSSS---CHHHHHHHHHSSSCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCC---ChHHHHHHhccccCCCCHHHHHHHHHHHHh
Confidence 46789999999999999999754 899999985 89999999999999874
No 39
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=99.12 E-value=2e-10 Score=69.85 Aligned_cols=47 Identities=21% Similarity=0.405 Sum_probs=42.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCCchHHHHHH-HcCCCCHHHHHHHHH
Q 034697 9 SRSSGSSWTVKQNKQFETALAFYDKDTPDRWDNVAK-AVSGKTVEDVKKHYE 59 (86)
Q Consensus 9 ~~~~~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~-~vpgRT~~qc~~ry~ 59 (86)
+......||++|.++|+++|.+|++ .|..|++ .||+||+.||...|.
T Consensus 4 ~r~~~~~WT~eE~~~Fe~~l~~yGK----df~~I~~~~v~~Kt~~~~v~fYY 51 (70)
T 2crg_A 4 GSSGMEEWSASEACLFEEALEKYGK----DFNDIRQDFLPWKSLTSIIEYYY 51 (70)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHHTCS----CHHHHHHTTCSSSCHHHHHHHHH
T ss_pred cccCCCCCCHHHHHHHHHHHHHhCc----cHHHHHHHHcCCCCHHHHHHHHH
Confidence 4456789999999999999999986 4999999 699999999999986
No 40
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.11 E-value=8.9e-11 Score=78.54 Aligned_cols=51 Identities=20% Similarity=0.369 Sum_probs=45.5
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHc----CCCCHHHHHHHHHHHHHH
Q 034697 11 SSGSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAV----SGKTVEDVKKHYELLVKD 64 (86)
Q Consensus 11 ~~~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~v----pgRT~~qc~~ry~~L~~d 64 (86)
-....||.|||..|..++.+|+. .+|..|++.+ +|||..||++||..|+..
T Consensus 15 r~r~~WT~EEd~~L~~gV~k~G~---G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~ 69 (121)
T 2juh_A 15 RIRRPFSVAEVEALVEAVEHLGT---GRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT 69 (121)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHGG---GCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHCC---CCHHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 35689999999999999999975 4899999995 899999999999998764
No 41
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.09 E-value=3e-10 Score=68.35 Aligned_cols=53 Identities=15% Similarity=0.318 Sum_probs=45.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCCchHHHHH---HHcCCCCHHHHHHHHHHHHHH
Q 034697 8 SSRSSGSSWTVKQNKQFETALAFYDKDTPDRWDNVA---KAVSGKTVEDVKKHYELLVKD 64 (86)
Q Consensus 8 ~~~~~~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA---~~vpgRT~~qc~~ry~~L~~d 64 (86)
|.+....+||+||+..|.+.+.+|+. +|..|+ ..+++||..+++++|+.|...
T Consensus 3 ~~~~~r~~WT~EE~~~L~~gV~k~G~----~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 3 SGSSGRKDFTKEEVNYLFHGVKTMGN----HWNSILWSFPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CCCCCSSSCCHHHHHHHHHHHHHHCS----CHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHhH----hHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence 34556789999999999999999963 799999 477899999999999998643
No 42
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.09 E-value=6.1e-11 Score=87.29 Aligned_cols=53 Identities=11% Similarity=0.238 Sum_probs=44.6
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCC--CCchHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 034697 12 SGSSWTVKQNKQFETALAFYDKD--TPDRWDNVAKAVSGKTVEDVKKHYELLVKD 64 (86)
Q Consensus 12 ~~~~WT~eEdk~Le~al~~~~~~--~~~rW~~IA~~vpgRT~~qc~~ry~~L~~d 64 (86)
....||.|||++|.+++.+||.. +...|..||++|||||..||++||..++..
T Consensus 7 ~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~ 61 (246)
T 1ign_A 7 NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSK 61 (246)
T ss_dssp -CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGG
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhh
Confidence 45699999999999999999742 223399999999999999999999986544
No 43
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=98.97 E-value=1.3e-09 Score=69.66 Aligned_cols=44 Identities=20% Similarity=0.313 Sum_probs=40.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHH
Q 034697 13 GSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYEL 60 (86)
Q Consensus 13 ~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~ 60 (86)
...||++|..+|++++.+||+ .|.+||+.||+||..||..+|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK----~F~~Ia~~l~~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPK----NFGLIASFLERKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTT----CHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC----CHHHHHHHcCCCCHHHHHHHHhc
Confidence 578999999999999999986 59999999999999999999854
No 44
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.72 E-value=4.5e-08 Score=77.66 Aligned_cols=46 Identities=17% Similarity=0.385 Sum_probs=41.9
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHH
Q 034697 11 SSGSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYEL 60 (86)
Q Consensus 11 ~~~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~ 60 (86)
.....||.+|..+|+++|.+|++ .|..||+.|++||+.||+.+|..
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yGk----dw~~IA~~VgTKT~~Qvk~fy~~ 423 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYGR----DFQAISDVIGNKSVVQVKNFFVN 423 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHTT----CHHHHHHHHSSCCHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHhCCCCHHHHHHHHHH
Confidence 34579999999999999999975 59999999999999999999975
No 45
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.66 E-value=1.7e-07 Score=60.20 Aligned_cols=55 Identities=15% Similarity=0.241 Sum_probs=47.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHhhh
Q 034697 13 GSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKDINDI 68 (86)
Q Consensus 13 ~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~dv~~i 68 (86)
.--||.|||..++.+..+-+. .++.|..||+.|++||.+||.+||+.|..-+...
T Consensus 33 VvlWTRe~DR~IL~~cQ~~G~-s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~~~ 87 (95)
T 1ug2_A 33 VVLWTREADRVILTMCQEQGA-QPHTFSVISQQLGNKTPVEVSHRFRELMQLFHTA 87 (95)
T ss_dssp CSSSCHHHHHHHHHHHHHTTS-CTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHHC
T ss_pred EEEeccccCHHHHHHHHhcCC-ChhHHHHHHHHHccCCHHHHHHHHHHHHHHHHHH
Confidence 356999999999999888654 3679999999999999999999999998877653
No 46
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.62 E-value=1.4e-07 Score=60.48 Aligned_cols=52 Identities=17% Similarity=0.368 Sum_probs=46.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHc-----CCCCHHHHHHHHHHHHHHHhhhh
Q 034697 14 SSWTVKQNKQFETALAFYDKDTPDRWDNVAKAV-----SGKTVEDVKKHYELLVKDINDIE 69 (86)
Q Consensus 14 ~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~v-----pgRT~~qc~~ry~~L~~dv~~ie 69 (86)
.+||.||...|.+++.+|. .||-.|+... ++||++++++||..+...+....
T Consensus 31 ~~WTkEETd~Lf~L~~~fd----lRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r 87 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFD----LRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTT----TCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhC----CCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 7999999999999999996 4899999999 58999999999998877766543
No 47
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.54 E-value=1.9e-07 Score=55.00 Aligned_cols=49 Identities=12% Similarity=0.184 Sum_probs=43.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCC-----CCchHHHHHH-HcCCCCHHHHHHHHHHH
Q 034697 13 GSSWTVKQNKQFETALAFYDKD-----TPDRWDNVAK-AVSGKTVEDVKKHYELL 61 (86)
Q Consensus 13 ~~~WT~eEdk~Le~al~~~~~~-----~~~rW~~IA~-~vpgRT~~qc~~ry~~L 61 (86)
...||.|||+.|.+.|..|... ...-|..+|+ .+|++|-++|++||.+.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~ 56 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKH 56 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHH
Confidence 5689999999999999999421 4688999999 89999999999999864
No 48
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=97.82 E-value=2.4e-08 Score=61.12 Aligned_cols=53 Identities=13% Similarity=0.202 Sum_probs=45.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Q 034697 13 GSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKDIND 67 (86)
Q Consensus 13 ~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~dv~~ 67 (86)
.-.||.|||..+..+..+-+. .+..|..||+.+ +||++||.+||+.|..-+..
T Consensus 14 vvlWTReeDR~IL~~cq~~G~-s~~tfa~iA~~L-nks~~QV~~RF~~Lm~Lf~k 66 (70)
T 2lr8_A 14 IILWTRNDDRVILLECQKRGP-SSKTFAYLAAKL-DKNPNQVSERFQQLMKLFEK 66 (70)
Confidence 457999999999988777554 357999999999 89999999999998876654
No 49
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=98.26 E-value=1.3e-06 Score=65.92 Aligned_cols=51 Identities=33% Similarity=0.444 Sum_probs=45.4
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 034697 12 SGSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKDI 65 (86)
Q Consensus 12 ~~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~dv 65 (86)
+=..||..+...|+.|+.+|+.+ .|+.||+.|+|||.+||+.+|..+.+..
T Consensus 109 GF~~W~rrdf~~Fi~a~~kyGr~---~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry 159 (304)
T 1ofc_X 109 GFTAWTKRDFNQFIKANEKYGRD---DIDNIAKDVEGKTPEEVIEYNAVFWERC 159 (304)
T ss_dssp SCTTCCHHHHHHHHHHHHHHCTT---CHHHHTTSSTTCCHHHHHHHHHHHHHHG
T ss_pred hhcccCHHHHHHHHHHHHHhCHH---HHHHHHHHhcCCCHHHHHHHHHHHHHhH
Confidence 34579999999999999999864 7999999999999999998888877766
No 50
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=98.05 E-value=8.6e-06 Score=50.17 Aligned_cols=58 Identities=9% Similarity=0.303 Sum_probs=47.1
Q ss_pred CCCCCHHHHHHHHHHHHhc------CCCCCchHHHHHHHcC----CCCHHHHHHHHHHHHHHHhhhhc
Q 034697 13 GSSWTVKQNKQFETALAFY------DKDTPDRWDNVAKAVS----GKTVEDVKKHYELLVKDINDIEA 70 (86)
Q Consensus 13 ~~~WT~eEdk~Le~al~~~------~~~~~~rW~~IA~~vp----gRT~~qc~~ry~~L~~dv~~ie~ 70 (86)
...||.+|-.+|+.+.... +......|+.||..|. .||++||+.+|+.|...-+.+..
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~~k~ 71 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKKAKH 71 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCSCSS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3579999999999997652 1223468999999975 59999999999999998887654
No 51
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.93 E-value=5e-05 Score=48.65 Aligned_cols=51 Identities=18% Similarity=0.375 Sum_probs=44.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcC-----CCCHHHHHHHHHHHHHHHhhh
Q 034697 14 SSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVS-----GKTVEDVKKHYELLVKDINDI 68 (86)
Q Consensus 14 ~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vp-----gRT~~qc~~ry~~L~~dv~~i 68 (86)
..||.||-..|-+++.+|. -||-.|+.... .||+++.++||..+...+...
T Consensus 31 ~~WT~eETd~LfdLc~~fd----lRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~ 86 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRFD----LRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANV 86 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTT----TCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcC----CCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 6899999999999999996 48999999984 699999999999887776654
No 52
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=97.79 E-value=0.00015 Score=43.44 Aligned_cols=56 Identities=14% Similarity=0.191 Sum_probs=47.1
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcC--CCCHHHHHHHHHHHHHHHhh
Q 034697 11 SSGSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVS--GKTVEDVKKHYELLVKDIND 67 (86)
Q Consensus 11 ~~~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vp--gRT~~qc~~ry~~L~~dv~~ 67 (86)
-..-.||+|....|..|+.+++. ....+..|-+.|+ |.|..+|+.|.+++.-.++.
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG~-~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r 62 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKFRVALKK 62 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCT-TTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHS
T ss_pred CCCCcCCHHHHHHHHHHHHHhCC-CCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHc
Confidence 34568999999999999999984 3456999999865 89999999999988777664
No 53
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.65 E-value=6.6e-06 Score=65.31 Aligned_cols=43 Identities=26% Similarity=0.541 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHH
Q 034697 13 GSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYE 59 (86)
Q Consensus 13 ~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~ 59 (86)
...||.+|.++|+++|.+|++ .|.+|+++||+||..+|..+|.
T Consensus 189 ~d~WT~eE~~lFe~al~~yGK----dF~~I~~~lp~Ksv~e~V~yYY 231 (482)
T 2xag_B 189 PDEWTVEDKVLFEQAFSFHGK----TFHRIQQMLPDKSIASLVKFYY 231 (482)
T ss_dssp -----------------------------------------------
T ss_pred ccccCHHHHHHHHHHHHHcCc----cHHHHHHHcCCCCHHHHHHHhc
Confidence 458999999999999999986 4999999999999999998864
No 54
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=97.19 E-value=0.0013 Score=45.64 Aligned_cols=52 Identities=15% Similarity=0.268 Sum_probs=41.9
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHH--cCCCCHHHHHHHHHHHHHH
Q 034697 12 SGSSWTVKQNKQFETALAFYDKDTPDRWDNVAKA--VSGKTVEDVKKHYELLVKD 64 (86)
Q Consensus 12 ~~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~--vpgRT~~qc~~ry~~L~~d 64 (86)
....||..|-..|..++.+|+.. .+||+.|++. +.+||.++++..|..+...
T Consensus 6 ~~~~~t~~E~r~fira~~kfG~~-~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~ 59 (211)
T 4b4c_A 6 NIKGFSDAEIRRFIKSYKKFGGP-LERLDAIARDAELVDKSETDLRRLGELVHNG 59 (211)
T ss_dssp --CCSCHHHHHHHHHHHTTCSSG-GGCHHHHHHHTTCTTSCHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHCCc-hhHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 45689999999999999999732 4699999976 6799999999877765444
No 55
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=97.03 E-value=0.0021 Score=47.23 Aligned_cols=28 Identities=7% Similarity=0.151 Sum_probs=25.3
Q ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 034697 38 RWDNVAKAVSGKTVEDVKKHYELLVKDI 65 (86)
Q Consensus 38 rW~~IA~~vpgRT~~qc~~ry~~L~~dv 65 (86)
+|..||+.+|++|....++||.+++.+.
T Consensus 173 ~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 173 FFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 8999999999999999999999866543
No 56
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=96.88 E-value=0.0034 Score=47.22 Aligned_cols=55 Identities=13% Similarity=0.263 Sum_probs=46.9
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCchHHHHHH------------HcCCCCHHHHHHHHHHHHHHHh
Q 034697 12 SGSSWTVKQNKQFETALAFYDKDTPDRWDNVAK------------AVSGKTVEDVKKHYELLVKDIN 66 (86)
Q Consensus 12 ~~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~------------~vpgRT~~qc~~ry~~L~~dv~ 66 (86)
....||.+||..|.-+|.+|+-+..+.|++|-. .+-.||+.++..|...|+.-|.
T Consensus 211 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tLi~~ie 277 (304)
T 1ofc_X 211 KGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITLIE 277 (304)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHHH
Confidence 567899999999999999999876789999974 4557999999999988875543
No 57
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=95.99 E-value=0.024 Score=43.81 Aligned_cols=56 Identities=13% Similarity=0.225 Sum_probs=47.8
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHH------------cCCCCHHHHHHHHHHHHHHHh
Q 034697 11 SSGSSWTVKQNKQFETALAFYDKDTPDRWDNVAKA------------VSGKTVEDVKKHYELLVKDIN 66 (86)
Q Consensus 11 ~~~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~------------vpgRT~~qc~~ry~~L~~dv~ 66 (86)
+....||.+||..|+-+|-+|+-+..+.|++|-.. +-.||+.++..|...|+.-|.
T Consensus 226 ~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tLi~~Ie 293 (374)
T 2y9y_A 226 NNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTLLQCLE 293 (374)
T ss_dssp SSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHHH
Confidence 35678999999999999999997666789999666 457999999999999887654
No 58
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=95.73 E-value=0.014 Score=45.14 Aligned_cols=47 Identities=21% Similarity=0.402 Sum_probs=40.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHH
Q 034697 13 GSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVS-GKTVEDVKKHYELLV 62 (86)
Q Consensus 13 ~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vp-gRT~~qc~~ry~~L~ 62 (86)
=..||.-+=..|..|+.+|+.+ .-..||..|+ |||.+||+..++.+.
T Consensus 123 F~~WnrrDF~~FI~a~~kyGR~---d~~~IA~ev~~~Kt~eEV~~Y~~vFw 170 (374)
T 2y9y_A 123 FTNWNKLEFRKFITVSGKYGRN---SIQAIARELAPGKTLEEVRAYAKAFW 170 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHCTT---CHHHHHSSCCCSSSHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHh---HHHHHHHHHccCCCHHHHHHHHHHHH
Confidence 3579999999999999999864 7999999998 999999996555443
No 59
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=94.44 E-value=0.23 Score=34.00 Aligned_cols=52 Identities=12% Similarity=0.298 Sum_probs=40.1
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHc--C----------C--CCHHHHHHHHHHHHHHHh
Q 034697 12 SGSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAV--S----------G--KTVEDVKKHYELLVKDIN 66 (86)
Q Consensus 12 ~~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~v--p----------g--RT~~qc~~ry~~L~~dv~ 66 (86)
-...||.+||..|...+.+|+-+ +|+.|-.-. + . .++.++..|...|+.-+.
T Consensus 133 ~~~~W~~~~D~~LL~Gi~k~G~g---~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~l~ 198 (211)
T 4b4c_A 133 FDIDWGKEDDSNLLIGIYEYGYG---SWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKLLS 198 (211)
T ss_dssp SSSCCCHHHHHHHHHHHHHHCTT---CHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHCcC---cHHHHHhChhcCccccccccccccCCChHHHHHHHHHHHHHHH
Confidence 35679999999999999999854 799998732 1 2 357789999877766554
No 60
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=92.62 E-value=0.42 Score=35.16 Aligned_cols=48 Identities=13% Similarity=0.138 Sum_probs=39.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHH--cCCCCHHHHHHHHHHH
Q 034697 13 GSSWTVKQNKQFETALAFYDKDTPDRWDNVAKA--VSGKTVEDVKKHYELL 61 (86)
Q Consensus 13 ~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~--vpgRT~~qc~~ry~~L 61 (86)
...||..|-..|.+++.+|+.- ..||+.|+.- |+.|+...++.-|..|
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~-~~R~e~I~~dA~L~~ks~~~i~~~~~~l 52 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNL-KEILDELIADGTLPVKSFEKYGETYDEM 52 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSC-TTCHHHHHHTTSSCCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCH-HHHHHHHHHhcccccCCHHHHHHHHHHH
Confidence 3579999999999999999842 4699999765 5679999988877654
No 61
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=89.57 E-value=1.5 Score=27.04 Aligned_cols=54 Identities=20% Similarity=0.385 Sum_probs=38.9
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCC------------CchHHHHHHHc-----CCCCHHHHHHHHHHHHHHH
Q 034697 12 SGSSWTVKQNKQFETALAFYDKDT------------PDRWDNVAKAV-----SGKTVEDVKKHYELLVKDI 65 (86)
Q Consensus 12 ~~~~WT~eEdk~Le~al~~~~~~~------------~~rW~~IA~~v-----pgRT~~qc~~ry~~L~~dv 65 (86)
+...|+++=+..|.+||..||+.. ..|=+-||.++ .-||.+||-.|-+.|....
T Consensus 5 ~e~vW~~~lE~aF~eaL~~yp~~g~~k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~~~ 75 (82)
T 2hzd_A 5 AEGVWSPDIEQSFQEALSIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRK 75 (82)
T ss_dssp GSCCSCHHHHHHHHHHHHHSCSSSCCCCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHHH
T ss_pred cCCcCCHHHHHHHHHHHHHcCCCCccceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHHHH
Confidence 467899999999999999998541 12333444444 2488999998888776553
No 62
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=86.19 E-value=3.8 Score=24.54 Aligned_cols=58 Identities=14% Similarity=0.127 Sum_probs=45.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Q 034697 8 SSRSSGSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKDIN 66 (86)
Q Consensus 8 ~~~~~~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~dv~ 66 (86)
+|.++...+|.++-..|+......+--....=+.||+.+ |-|..||+.=|++-....+
T Consensus 2 ~~g~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~t-gLte~qIkvWFqNrR~k~K 59 (76)
T 2ecc_A 2 SSGSSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQIT-GLPRPEIIQWFGDTRYALK 59 (76)
T ss_dssp CCSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHT-CCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH-CcCHHHhhHHhHhhHHHHH
Confidence 456778899999999999997776533456778899999 6999999987776554443
No 63
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=85.96 E-value=0.69 Score=34.01 Aligned_cols=29 Identities=17% Similarity=0.520 Sum_probs=25.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 034697 13 GSSWTVKQNKQFETALAFYDKDTPDRWDNVAK 44 (86)
Q Consensus 13 ~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~ 44 (86)
...|+.+||..|...|-+|+-| .|+.|-.
T Consensus 168 ~c~W~~~dD~~LLvGIykyGyG---~We~Ir~ 196 (270)
T 2xb0_X 168 SSNWTKEEDEKLLIGVFKYGYG---SWTQIRD 196 (270)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTT---CHHHHHH
T ss_pred CCCcChHHHHHHHHHHHHHcCC---cHHHHhc
Confidence 4689999999999999999865 7999964
No 64
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=85.19 E-value=1.8 Score=27.78 Aligned_cols=45 Identities=29% Similarity=0.446 Sum_probs=31.2
Q ss_pred chHHHHHHHcCCCC----HHHHHHHHHHHHHHHhh-hhcCCCCCCCCCCC
Q 034697 37 DRWDNVAKAVSGKT----VEDVKKHYELLVKDIND-IEAGRYPHPNYRST 81 (86)
Q Consensus 37 ~rW~~IA~~vpgRT----~~qc~~ry~~L~~dv~~-ie~g~v~~P~y~~~ 81 (86)
..|..||..++--+ ..+++.+|.+++-.... .+.|..|+|+--+.
T Consensus 73 ~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~yE~~~~~g~~~p~~i~~~ 122 (125)
T 2cxy_A 73 KKWRELATNLNVGTSSSAASSLKKQYIQYLFAFECKIERGEEPPPEVFST 122 (125)
T ss_dssp TCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHHHHHHHHCCCCCCSCC--
T ss_pred CcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCCCChhHhcc
Confidence 58999999997433 45778889876555543 46888888775443
No 65
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=81.32 E-value=5.2 Score=23.42 Aligned_cols=47 Identities=11% Similarity=0.145 Sum_probs=35.8
Q ss_pred CHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 034697 17 TVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKD 64 (86)
Q Consensus 17 T~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~d 64 (86)
|.+.+..+..+|...+.+..-.=..||+.+ |.+...|..|-..|.+.
T Consensus 12 ~~~~~~~IL~~L~~~~~~~~~t~~eLA~~L-gvs~~tV~~~L~~L~~~ 58 (77)
T 1qgp_A 12 YQDQEQRILKFLEELGEGKATTAHDLSGKL-GTPKKEINRVLYSLAKK 58 (77)
T ss_dssp HHHHHHHHHHHHHHHCSSSCEEHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCCcCHHHHHHHH-CcCHHHHHHHHHHHHHC
Confidence 455667777888888755556789999999 58888888887777543
No 66
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=79.98 E-value=5.8 Score=23.70 Aligned_cols=45 Identities=11% Similarity=0.177 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 034697 19 KQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKD 64 (86)
Q Consensus 19 eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~d 64 (86)
+-+..+..+|...+.|..-.=..||+.+ |-+...|..+-..|.++
T Consensus 10 ~~~~~IL~~L~~~~pg~~~t~~eLA~~L-gvsr~tV~~~L~~Le~~ 54 (81)
T 1qbj_A 10 DQEQRILKFLEELGEGKATTAHDLSGKL-GTPKKEINRVLYSLAKK 54 (81)
T ss_dssp HHHHHHHHHHHHHCTTCCBCHHHHHHHH-TCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHH-CcCHHHHHHHHHHHHHC
Confidence 4455667888888866566789999999 58888898887777543
No 67
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=79.21 E-value=4.5 Score=26.29 Aligned_cols=41 Identities=15% Similarity=0.128 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 034697 20 QNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKD 64 (86)
Q Consensus 20 Edk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~d 64 (86)
-|..+..+|.+-+ .-.|..||+.+ |-|...|+.|.+.|.+.
T Consensus 4 ~d~~il~~L~~~~---~~s~~~la~~l-g~s~~tv~~rl~~L~~~ 44 (162)
T 3i4p_A 4 LDRKILRILQEDS---TLAVADLAKKV-GLSTTPCWRRIQKMEED 44 (162)
T ss_dssp HHHHHHHHHTTCS---CSCHHHHHHHH-TCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCC---CCCHHHHHHHH-CcCHHHHHHHHHHHHHC
Confidence 4666777777654 34799999999 69999999999998765
No 68
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.15 E-value=9.4 Score=24.11 Aligned_cols=55 Identities=9% Similarity=0.053 Sum_probs=41.5
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHc----------------C----CCCHHHHHHHHHHHHHHHh
Q 034697 12 SGSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAV----------------S----GKTVEDVKKHYELLVKDIN 66 (86)
Q Consensus 12 ~~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~v----------------p----gRT~~qc~~ry~~L~~dv~ 66 (86)
....||..+...|+.+...-+--.....+.||+.+ + +.|..+|+.=|++-....+
T Consensus 9 ~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~k 83 (102)
T 2da6_A 9 NRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEEA 83 (102)
T ss_dssp CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHHH
Confidence 45689999999999997765533457889999999 2 6888899887776544433
No 69
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=77.58 E-value=7.7 Score=22.05 Aligned_cols=63 Identities=14% Similarity=0.053 Sum_probs=47.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHhhhh
Q 034697 6 MTSSRSSGSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKDINDIE 69 (86)
Q Consensus 6 ~~~~~~~~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~dv~~ie 69 (86)
|-.+......+|.++...|+......+--....=..||..+ |-+..+|+.=|++-....+..+
T Consensus 3 ~~~~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqNrR~k~kk~~ 65 (74)
T 2ly9_A 3 MPDSFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKIT-GLTKGEIKKWFSDTRYNQRNSK 65 (74)
T ss_dssp CCCCCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHh-CcCHHHeeeCChhHhHHHHhhC
Confidence 55677788899999999999987764422334456789999 6999999988887766655443
No 70
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=77.24 E-value=6.7 Score=21.19 Aligned_cols=47 Identities=11% Similarity=0.046 Sum_probs=34.1
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Q 034697 15 SWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKDIND 67 (86)
Q Consensus 15 ~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~dv~~ 67 (86)
..++.|..+|.-.. -. +..+..||..+ |.|...|+.+.......++.
T Consensus 15 ~L~~~~r~il~l~~---~~--g~s~~eIA~~l-gis~~tv~~~~~ra~~~l~~ 61 (70)
T 2o8x_A 15 DLTTDQREALLLTQ---LL--GLSYADAAAVC-GCPVGTIRSRVARARDALLA 61 (70)
T ss_dssp SSCHHHHHHHHHHH---TS--CCCHHHHHHHH-TSCHHHHHHHHHHHHHHHHC
T ss_pred hCCHHHHHHHHHHH---Hc--CCCHHHHHHHH-CcCHHHHHHHHHHHHHHHHH
Confidence 46666766665432 21 24799999999 69999999988877777664
No 71
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.44 E-value=9.3 Score=21.94 Aligned_cols=60 Identities=8% Similarity=0.085 Sum_probs=44.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Q 034697 7 TSSRSSGSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKDIND 67 (86)
Q Consensus 7 ~~~~~~~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~dv~~ 67 (86)
..+......+|.++-..|+.+....+--....=..||+.+ |-|..+|+.=|++-....+.
T Consensus 6 ~~~~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~-~l~~~qV~~WFqNrR~k~kk 65 (76)
T 2dn0_A 6 SGASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVT-GLSTREVRKWFSDRRYHCRN 65 (76)
T ss_dssp SCCCCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHH-CCCHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHh-CCChHHhhHHhHHHhHHHHH
Confidence 3344457789999999999998765533445567899999 69999999888776655554
No 72
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=74.14 E-value=5 Score=25.85 Aligned_cols=31 Identities=13% Similarity=0.275 Sum_probs=24.6
Q ss_pred CchHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Q 034697 36 PDRWDNVAKAVSGKTVEDVKKHYELLVKDIN 66 (86)
Q Consensus 36 ~~rW~~IA~~vpgRT~~qc~~ry~~L~~dv~ 66 (86)
.+.|..||..|+--+...++.+|.+++-...
T Consensus 69 ~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE 99 (123)
T 1kkx_A 69 TQQWSMVAQRLQISDYQQLESIYFRILLPYE 99 (123)
T ss_dssp SHHHHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHCCChHHHHHHHHHHHHHHHH
Confidence 4799999999986668889999987654433
No 73
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=73.13 E-value=12 Score=22.35 Aligned_cols=59 Identities=15% Similarity=0.127 Sum_probs=43.3
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcC--------------CCCHHHHHHHHHHHHHHHhhhhc
Q 034697 12 SGSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVS--------------GKTVEDVKKHYELLVKDINDIEA 70 (86)
Q Consensus 12 ~~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vp--------------gRT~~qc~~ry~~L~~dv~~ie~ 70 (86)
....||.++...|+..+..-+--....=+.||..++ .-|..+|+.=|++-....+....
T Consensus 10 ~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~ 82 (95)
T 2cuf_A 10 SRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRAN 82 (95)
T ss_dssp CSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhh
Confidence 356799999999999987755334456678999983 18999999888776555554443
No 74
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=72.47 E-value=11 Score=21.88 Aligned_cols=30 Identities=17% Similarity=0.140 Sum_probs=22.5
Q ss_pred chHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Q 034697 37 DRWDNVAKAVSGKTVEDVKKHYELLVKDIND 67 (86)
Q Consensus 37 ~rW~~IA~~vpgRT~~qc~~ry~~L~~dv~~ 67 (86)
-.-..||+.+ |.|..-|+.|....+..++.
T Consensus 54 ~s~~eIA~~l-gis~~tV~~~l~ra~~~Lr~ 83 (92)
T 3hug_A 54 WSTAQIATDL-GIAEGTVKSRLHYAVRALRL 83 (92)
T ss_dssp CCHHHHHHHH-TSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHH-CcCHHHHHHHHHHHHHHHHH
Confidence 4678899999 68888888887766655553
No 75
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=72.16 E-value=9.3 Score=23.49 Aligned_cols=33 Identities=21% Similarity=0.415 Sum_probs=23.7
Q ss_pred chHHHHHHHcCCCC----HHHHHHHHHHHHHHHhhhh
Q 034697 37 DRWDNVAKAVSGKT----VEDVKKHYELLVKDINDIE 69 (86)
Q Consensus 37 ~rW~~IA~~vpgRT----~~qc~~ry~~L~~dv~~ie 69 (86)
..|..||..++--+ ..+++.+|.+++-......
T Consensus 66 ~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~yE~~~ 102 (107)
T 2lm1_A 66 RKWAKVANRMQYPSSKSVGATLKAHYERILHPFEVYT 102 (107)
T ss_dssp TTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHHHHHH
Confidence 58999999996432 4678888988765554433
No 76
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=70.60 E-value=3 Score=25.30 Aligned_cols=30 Identities=20% Similarity=0.360 Sum_probs=21.3
Q ss_pred chHHHHHHHcCCC---C-HHHHHHHHHHHHHHHh
Q 034697 37 DRWDNVAKAVSGK---T-VEDVKKHYELLVKDIN 66 (86)
Q Consensus 37 ~rW~~IA~~vpgR---T-~~qc~~ry~~L~~dv~ 66 (86)
..|.+||..++-- + ..+++.+|.+++-...
T Consensus 58 ~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~yE 91 (96)
T 2jxj_A 58 KKWSKVGSRLGYLPGKGTGSLLKSHYERILYPYE 91 (96)
T ss_dssp TTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHHHH
T ss_pred CcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHHHH
Confidence 5899999999632 2 5677888877654443
No 77
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=70.12 E-value=12 Score=24.58 Aligned_cols=42 Identities=12% Similarity=0.135 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 034697 19 KQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKD 64 (86)
Q Consensus 19 eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~d 64 (86)
+-|..|..+|...+ .-.+..||+.+ |-|...|..|.+.|.+.
T Consensus 27 ~~d~~IL~~L~~~~---~~s~~eLA~~l-glS~~tv~~rl~~L~~~ 68 (171)
T 2e1c_A 27 EIDKKIIKILQNDG---KAPLREISKIT-GLAESTIHERIRKLRES 68 (171)
T ss_dssp HHHHHHHHHHHHCT---TCCHHHHHHHH-TSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcC---CCCHHHHHHHH-CcCHHHHHHHHHHHHHC
Confidence 34556667777754 35799999999 69999999999988654
No 78
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=70.05 E-value=14 Score=23.41 Aligned_cols=45 Identities=11% Similarity=0.115 Sum_probs=31.7
Q ss_pred HHHHHHHHhcCCC----------CCchHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Q 034697 22 KQFETALAFYDKD----------TPDRWDNVAKAVSGKTVEDVKKHYELLVKDIND 67 (86)
Q Consensus 22 k~Le~al~~~~~~----------~~~rW~~IA~~vpgRT~~qc~~ry~~L~~dv~~ 67 (86)
..|..+|.+.|.. .+-....||+.+ |.|...|+.+.......++.
T Consensus 132 ~~l~~~l~~L~~~~r~vl~l~~~~g~s~~EIA~~l-gis~~tV~~~l~ra~~~Lr~ 186 (194)
T 1or7_A 132 QIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIM-DCPVGTVRSRIFRAREAIDN 186 (194)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHTTCCCHHHHHHHT-TSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHhHHHHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHH
Confidence 4555666555421 245789999999 69999999988777666654
No 79
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.66 E-value=15 Score=21.81 Aligned_cols=50 Identities=18% Similarity=0.188 Sum_probs=34.4
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Q 034697 11 SSGSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKDIN 66 (86)
Q Consensus 11 ~~~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~dv~ 66 (86)
.+.-.||.++-..+...+.. ..+-.|=-.-++-|.++|+..|+.|.....
T Consensus 7 ~~~~~~s~~~~~~~~~~~~~------~~~y~iLgv~~~as~~eIk~aYr~la~~~H 56 (90)
T 2ys8_A 7 GSSASFTKEQADAIRRIRNS------KDSWDMLGVKPGASRDEVNKAYRKLAVLLH 56 (90)
T ss_dssp CCCCCCCHHHHHHHHHHHTC------SSHHHHHTCCTTCCHHHHHHHHHHHHHHHC
T ss_pred ccccCCCHHHHHHHHHHhcC------CCHHHHcCcCCCCCHHHHHHHHHHHHHHHC
Confidence 34567999998888765432 234444444457899999999998865543
No 80
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=69.46 E-value=3.1 Score=26.35 Aligned_cols=26 Identities=15% Similarity=0.359 Sum_probs=21.3
Q ss_pred chHHHHHHHcCCCCHHHHHHHHHHHH
Q 034697 37 DRWDNVAKAVSGKTVEDVKKHYELLV 62 (86)
Q Consensus 37 ~rW~~IA~~vpgRT~~qc~~ry~~L~ 62 (86)
..|..||..++--....++.+|.+++
T Consensus 71 ~~W~~Va~~lg~~~~~~Lr~~Y~k~L 96 (116)
T 2li6_A 71 QQWSMVAQRLQISDYQQLESIYFRIL 96 (116)
T ss_dssp TCHHHHHHHHTSCCTTHHHHHHHHHH
T ss_pred CcHHHHHHHhCCChHHHHHHHHHHHH
Confidence 58999999998655788888888754
No 81
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=67.91 E-value=19 Score=22.87 Aligned_cols=35 Identities=17% Similarity=0.370 Sum_probs=23.8
Q ss_pred CchHHHHHHHcCCCC----HHHHHHHHHHHHHHHhhhhc
Q 034697 36 PDRWDNVAKAVSGKT----VEDVKKHYELLVKDINDIEA 70 (86)
Q Consensus 36 ~~rW~~IA~~vpgRT----~~qc~~ry~~L~~dv~~ie~ 70 (86)
...|..||..|+--+ ....+.+|.+++-......+
T Consensus 63 ~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~yE~~~~ 101 (122)
T 2eqy_A 63 DRKWTKIATKMGFAPGKAVGSHIRGHYERILNPYNLFLS 101 (122)
T ss_dssp TTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHHHHHHHH
T ss_pred CCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHHHHHHh
Confidence 358999999996422 45778889876555444333
No 82
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=67.71 E-value=20 Score=22.48 Aligned_cols=40 Identities=15% Similarity=0.155 Sum_probs=31.0
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 034697 21 NKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKD 64 (86)
Q Consensus 21 dk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~d 64 (86)
|..+..+|...+ .-.+..||+.+ |-|...|..|.+.|.+.
T Consensus 11 d~~il~~L~~~~---~~s~~ela~~l-g~s~~tv~~~l~~L~~~ 50 (151)
T 2dbb_A 11 DMQLVKILSENS---RLTYRELADIL-NTTRQRIARRIDKLKKL 50 (151)
T ss_dssp HHHHHHHHHHCT---TCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CCCHHHHHHHH-CcCHHHHHHHHHHHHHC
Confidence 445556777654 35799999999 68999999999988654
No 83
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=65.84 E-value=4.5 Score=26.69 Aligned_cols=38 Identities=11% Similarity=0.177 Sum_probs=27.1
Q ss_pred chHHHHHHHcCCC-----CHHHHHHHHHHHHHHHhhhhcCCCC
Q 034697 37 DRWDNVAKAVSGK-----TVEDVKKHYELLVKDINDIEAGRYP 74 (86)
Q Consensus 37 ~rW~~IA~~vpgR-----T~~qc~~ry~~L~~dv~~ie~g~v~ 74 (86)
..|..||..|+-- ...+++.+|.+++-.......|..+
T Consensus 86 ~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~~~~g~~~ 128 (145)
T 2kk0_A 86 KLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSN 128 (145)
T ss_dssp TCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHHHHHTCCCC
T ss_pred CcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 5899999999632 1567888898876665555666444
No 84
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=65.11 E-value=15 Score=19.98 Aligned_cols=51 Identities=14% Similarity=0.096 Sum_probs=37.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 034697 13 GSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKD 64 (86)
Q Consensus 13 ~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~d 64 (86)
...+|.++...|+......+--....=..||..+ |-|..+|+.=|++-...
T Consensus 3 Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqNrR~k 53 (60)
T 3a02_A 3 HMTFTSFQLEELEKAFSRTHYPDVFTREELAMKI-GLTEARIQVWFQNRRAK 53 (60)
T ss_dssp --CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred CcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHH-CcCHHHHHHHhhhhhhh
Confidence 4578999999999998765432334457899999 69999998877665443
No 85
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=64.19 E-value=22 Score=21.64 Aligned_cols=31 Identities=10% Similarity=0.254 Sum_probs=24.1
Q ss_pred CchHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Q 034697 36 PDRWDNVAKAVSGKTVEDVKKHYELLVKDIND 67 (86)
Q Consensus 36 ~~rW~~IA~~vpgRT~~qc~~ry~~L~~dv~~ 67 (86)
+-....||+.+ |.|...|+.+.......++.
T Consensus 124 g~s~~EIA~~l-gis~~tV~~~~~ra~~~Lr~ 154 (164)
T 3mzy_A 124 GYSYREIATIL-SKNLKSIDNTIQRIRKKSEE 154 (164)
T ss_dssp TCCHHHHHHHH-TCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHH
Confidence 45789999999 68999999888776666553
No 86
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=63.88 E-value=24 Score=22.15 Aligned_cols=40 Identities=13% Similarity=0.147 Sum_probs=31.1
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 034697 21 NKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKD 64 (86)
Q Consensus 21 dk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~d 64 (86)
|..+..+|...+ .-.+..||+.+ |-|...|..|.+.|.+.
T Consensus 9 ~~~il~~L~~~~---~~s~~ela~~l-g~s~~tv~~~l~~L~~~ 48 (151)
T 2cyy_A 9 DKKIIKILQNDG---KAPLREISKIT-GLAESTIHERIRKLRES 48 (151)
T ss_dssp HHHHHHHHHHCT---TCCHHHHHHHH-CSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CCCHHHHHHHH-CcCHHHHHHHHHHHHHC
Confidence 445556777654 35799999999 69999999999988654
No 87
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.58 E-value=19 Score=20.73 Aligned_cols=54 Identities=7% Similarity=0.001 Sum_probs=39.8
Q ss_pred CCCCCHHHHHHHHHHHHhc----CCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Q 034697 13 GSSWTVKQNKQFETALAFY----DKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKDIND 67 (86)
Q Consensus 13 ~~~WT~eEdk~Le~al~~~----~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~dv~~ 67 (86)
...+|.++-..|+...... +--....=..||..+ |-+..+|+.=|++-....+.
T Consensus 12 Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~l-gL~~~qV~vWFqNrR~k~rk 69 (80)
T 2da4_A 12 RTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATEL-NVDCEIVRTWIGNRRRKYRL 69 (80)
T ss_dssp SCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHH-TCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHh-CCCHHHhhHhHHHHHHHHhh
Confidence 4568999999999997765 321234457889999 69999999888776655444
No 88
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=63.13 E-value=19 Score=20.55 Aligned_cols=53 Identities=15% Similarity=0.090 Sum_probs=39.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Q 034697 13 GSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKDIN 66 (86)
Q Consensus 13 ~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~dv~ 66 (86)
...+|.++...|+......+--....=..||..+ |-|..+|+.=|++-....+
T Consensus 21 Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqNrR~k~k 73 (80)
T 2da3_A 21 RTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEV-GLKKRVVQVWFQNTRARER 73 (80)
T ss_dssp CSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHH-TSCHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-CcCHHHhHHHhHHHHHhHh
Confidence 3568999999999988765532334557899999 6999999987776554444
No 89
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=62.92 E-value=16 Score=19.60 Aligned_cols=50 Identities=12% Similarity=0.038 Sum_probs=38.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Q 034697 13 GSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVK 63 (86)
Q Consensus 13 ~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~ 63 (86)
...+|.++...|+......+--....=..||..+ |-|..+|+.=|++-..
T Consensus 4 Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqNrR~ 53 (58)
T 1ig7_A 4 RTPFTTAQLLALERKFRQKQYLSIAERAEFSSSL-SLTETQVKIWFQNRRA 53 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHT-TCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHH-CcCHHHhhhhhhHhhh
Confidence 4578999999999998776533445667899999 6999999887765443
No 90
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=61.62 E-value=19 Score=20.16 Aligned_cols=54 Identities=11% Similarity=0.080 Sum_probs=40.9
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Q 034697 12 SGSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKDIN 66 (86)
Q Consensus 12 ~~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~dv~ 66 (86)
....+|.++...|+......+--....=..||..+ |-|..+|+.=|++-....+
T Consensus 10 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l-~l~~~qV~~WFqNRR~k~k 63 (70)
T 2cra_A 10 KRIPYSKGQLRELEREYAANKFITKDKRRKISAAT-SLSERQITIWFQNRRVKEK 63 (70)
T ss_dssp SCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHT-CCCHHHHHHHHHHHHHTTT
T ss_pred CCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-CCCHHHhhHhhHhHHHHhc
Confidence 35679999999999998775533445667899999 6999999987776554433
No 91
>2cop_A Acyl-coenzyme A binding domain containing 6; acyl COA binding protein, COA binding protein, lipid binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.50 E-value=20 Score=22.63 Aligned_cols=28 Identities=18% Similarity=0.440 Sum_probs=22.4
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Q 034697 39 WDNVAKAVSGKTVEDVKKHYELLVKDIND 67 (86)
Q Consensus 39 W~~IA~~vpgRT~~qc~~ry~~L~~dv~~ 67 (86)
|..=. .++|.|.++++.+|..+++.+..
T Consensus 62 w~AW~-~l~gms~eeAm~~YI~lv~~l~~ 89 (109)
T 2cop_A 62 WEAWK-ALGDSSPSQAMQEYIAVVKKLDP 89 (109)
T ss_dssp HHHHH-SCTTCCHHHHHHHHHHHHHHHCT
T ss_pred HHHHH-HhcCCCHHHHHHHHHHHHHHHhh
Confidence 44433 35899999999999999999875
No 92
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=60.27 E-value=27 Score=21.41 Aligned_cols=40 Identities=20% Similarity=0.231 Sum_probs=30.6
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 034697 21 NKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKD 64 (86)
Q Consensus 21 dk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~d 64 (86)
|..+..+|...+ .-.+..||+.+ |-|...|..+.+.|.+.
T Consensus 6 ~~~il~~L~~~~---~~~~~ela~~l-g~s~~tv~~~l~~L~~~ 45 (141)
T 1i1g_A 6 DKIILEILEKDA---RTPFTEIAKKL-GISETAVRKRVKALEEK 45 (141)
T ss_dssp HHHHHHHHHHCT---TCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CCCHHHHHHHH-CcCHHHHHHHHHHHHHC
Confidence 344555676643 34799999999 79999999999988654
No 93
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=60.18 E-value=22 Score=20.41 Aligned_cols=58 Identities=12% Similarity=0.020 Sum_probs=43.7
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHhhhhc
Q 034697 12 SGSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKDINDIEA 70 (86)
Q Consensus 12 ~~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~dv~~ie~ 70 (86)
....+|.++...|+......+--....=..||..+ |-|..+|+.=|++-....+..+.
T Consensus 10 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqNRR~k~rk~~~ 67 (80)
T 2dms_A 10 ERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKI-NLPESRVQVWFKNRRAKCRQQQQ 67 (80)
T ss_dssp CCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHT-TCCHHHHHHHHHHHHTHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH-CcCHHHhhhhhHHHhHHhhHHHH
Confidence 35679999999999998776533445667899999 69999999888776655555443
No 94
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.86 E-value=23 Score=20.42 Aligned_cols=53 Identities=15% Similarity=0.065 Sum_probs=40.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Q 034697 13 GSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKDIN 66 (86)
Q Consensus 13 ~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~dv~ 66 (86)
...+|.++...|+......+--....=..||..+ |-|..||+.=|++-....+
T Consensus 21 Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l-~L~~~qV~vWFqNRR~k~k 73 (80)
T 2dmt_A 21 RTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESL-GLSQLQVKTWYQNRRMKWK 73 (80)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHh-CCCHHHeeeccHHHHHHhh
Confidence 3569999999999998776533445567899999 6999999987776554443
No 95
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=58.45 E-value=31 Score=21.60 Aligned_cols=40 Identities=18% Similarity=0.209 Sum_probs=31.5
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 034697 21 NKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKD 64 (86)
Q Consensus 21 dk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~d 64 (86)
|..+..+|...+ .-.+..||+.+ |-|...|..|.+.|.+.
T Consensus 10 d~~il~~L~~~~---~~s~~ela~~l-g~s~~tv~~~l~~L~~~ 49 (152)
T 2cg4_A 10 DRGILEALMGNA---RTAYAELAKQF-GVSPETIHVRVEKMKQA 49 (152)
T ss_dssp HHHHHHHHHHCT---TSCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CCCHHHHHHHH-CcCHHHHHHHHHHHHHc
Confidence 445666777654 35799999999 69999999999988654
No 96
>1hbk_A ACBP, acyl-COA binding protein; fatty acid metabolism; HET: COA MYR; 2.0A {Plasmodium falciparum} SCOP: a.11.1.1
Probab=58.39 E-value=11 Score=22.79 Aligned_cols=22 Identities=32% Similarity=0.410 Sum_probs=19.4
Q ss_pred HcCCCCHHHHHHHHHHHHHHHh
Q 034697 45 AVSGKTVEDVKKHYELLVKDIN 66 (86)
Q Consensus 45 ~vpgRT~~qc~~ry~~L~~dv~ 66 (86)
.++|.|.++++.+|..+++.+.
T Consensus 63 ~l~gms~eeA~~~YI~~v~~l~ 84 (89)
T 1hbk_A 63 SVENLNREDAQKRYVDIVSEIF 84 (89)
T ss_dssp HTTTCCHHHHHHHHHHHHHHHC
T ss_pred HhcCCCHHHHHHHHHHHHHHHc
Confidence 3589999999999999998875
No 97
>3epy_A Acyl-COA-binding domain-containing protein 7; acyl-COA binding protein, fatty acid, lipid metabolism, structural genomics; HET: COA PLM; 2.00A {Homo sapiens} SCOP: a.11.1.1
Probab=58.37 E-value=12 Score=22.82 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=20.3
Q ss_pred HcCCCCHHHHHHHHHHHHHHHhh
Q 034697 45 AVSGKTVEDVKKHYELLVKDIND 67 (86)
Q Consensus 45 ~vpgRT~~qc~~ry~~L~~dv~~ 67 (86)
.++|.|.++++.+|..+++.+..
T Consensus 63 ~l~g~s~eeA~~~Yi~~v~~l~~ 85 (89)
T 3epy_A 63 LKKGLSTEDATSAYISKAKELIE 85 (89)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HhhCCCHHHHHHHHHHHHHHHhh
Confidence 37899999999999999988764
No 98
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.36 E-value=24 Score=20.18 Aligned_cols=54 Identities=11% Similarity=0.153 Sum_probs=40.6
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Q 034697 12 SGSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKDIN 66 (86)
Q Consensus 12 ~~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~dv~ 66 (86)
....+|.++...|+......+--....=..||..+ |-|..+|+.=|++-....+
T Consensus 10 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqNrR~k~k 63 (80)
T 2dmq_A 10 MRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKT-GLTKRVLQVWFQNARAKFR 63 (80)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHT-CCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHh-CCCHHHhhHccHHHHHHHH
Confidence 35679999999999998776533445678899999 6999999887765444333
No 99
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=58.34 E-value=22 Score=19.90 Aligned_cols=54 Identities=20% Similarity=0.231 Sum_probs=37.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Q 034697 9 SRSSGSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVK 63 (86)
Q Consensus 9 ~~~~~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~ 63 (86)
|.++...-+.++-..|+......+--....=..||+.+ |-|..+|+.=|++-..
T Consensus 3 sg~~~~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l-~L~e~qVqvWFqNRRa 56 (64)
T 2e19_A 3 SGSSGQPPLKNLLSLLKAYYALNAQPSAEELSKIADSV-NLPLDVVKKWFEKMQA 56 (64)
T ss_dssp CSCSCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHH-TCCHHHHHHHHHHHHH
T ss_pred CCCCCCCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHh-CcChhhcCcchhcccC
Confidence 44455667788888999987654422334456799999 6999999887765543
No 100
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=57.91 E-value=22 Score=19.76 Aligned_cols=54 Identities=9% Similarity=0.102 Sum_probs=41.2
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Q 034697 12 SGSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKDIN 66 (86)
Q Consensus 12 ~~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~dv~ 66 (86)
....+|.++...|+......+--....=..||..+ |-|..+|+.=|++-....+
T Consensus 10 ~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l-~l~~~qV~~WFqNrR~k~k 63 (70)
T 2da1_A 10 PRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKS-GLPQKVIKHWFRNTLFKER 63 (70)
T ss_dssp CSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHH-CCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHh-CCCHHHHHHHhhhhhHHHh
Confidence 45679999999999998665433455678899999 6999999987776554443
No 101
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=57.09 E-value=9.6 Score=24.06 Aligned_cols=31 Identities=26% Similarity=0.422 Sum_probs=22.0
Q ss_pred CchHHHHHHHcCCCC----HHHHHHHHHHHHHHHh
Q 034697 36 PDRWDNVAKAVSGKT----VEDVKKHYELLVKDIN 66 (86)
Q Consensus 36 ~~rW~~IA~~vpgRT----~~qc~~ry~~L~~dv~ 66 (86)
...|..||..|+--+ ..+++.+|.+++-...
T Consensus 61 ~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~yE 95 (117)
T 2jrz_A 61 DRRWARVAQRLNYPPGKNIGSLLRSHYERIVYPYE 95 (117)
T ss_dssp TTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHHHH
T ss_pred cCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 358999999996432 5678888887544433
No 102
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=56.99 E-value=5.9 Score=25.56 Aligned_cols=20 Identities=35% Similarity=0.694 Sum_probs=17.4
Q ss_pred HHHHHHcCCCCHHHHHHHHH
Q 034697 40 DNVAKAVSGKTVEDVKKHYE 59 (86)
Q Consensus 40 ~~IA~~vpgRT~~qc~~ry~ 59 (86)
..||..+.|||++|+|+.|.
T Consensus 115 ~~vA~~ikgkt~eeiR~~f~ 134 (141)
T 1fs1_B 115 KTVANMIKGKTPEEIRKTFN 134 (141)
T ss_dssp HHHHHHHTTCCHHHHHHHTC
T ss_pred HHHHHHHcCCCHHHHHHHcC
Confidence 47899999999999998764
No 103
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=56.94 E-value=26 Score=20.16 Aligned_cols=50 Identities=10% Similarity=0.053 Sum_probs=37.8
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHH
Q 034697 12 SGSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLV 62 (86)
Q Consensus 12 ~~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~ 62 (86)
....+|.++...|+......+--....=..||..+ |-|..+|+.=|++-.
T Consensus 10 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l-~l~~~qV~vWFqNRR 59 (80)
T 2cue_A 10 NRTSFTQEQIEALEKEFERTHYPDVFARERLAAKI-DLPEARIQVWFSNRR 59 (80)
T ss_dssp CCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHT-TCCHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHh-CCCHHHhhHHHHHHH
Confidence 45679999999999997665433345567899999 699999987665533
No 104
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=56.90 E-value=6.3 Score=25.98 Aligned_cols=20 Identities=30% Similarity=0.644 Sum_probs=17.6
Q ss_pred HHHHHHcCCCCHHHHHHHHH
Q 034697 40 DNVAKAVSGKTVEDVKKHYE 59 (86)
Q Consensus 40 ~~IA~~vpgRT~~qc~~ry~ 59 (86)
..||..+.|||++||++.|.
T Consensus 119 ~~vA~~ikgkt~eeir~~f~ 138 (160)
T 2p1m_A 119 QTVADMIKGKTPEEIRTTFN 138 (160)
T ss_dssp HHHHHTTTTCCHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHcC
Confidence 47899999999999998765
No 105
>2cb8_A Acyl-COA-binding protein; acyl-coenzyme A binding protein, fatty acid, acetylation, alternative splicing, lipid-binding, transport; HET: MYA; 1.4A {Homo sapiens} PDB: 2fj9_A 1aca_A* 1hb6_A 1hb8_A 1nti_A 1nvl_A* 2abd_A 2fdq_A
Probab=56.31 E-value=14 Score=22.38 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.1
Q ss_pred HcCCCCHHHHHHHHHHHHHHHhh
Q 034697 45 AVSGKTVEDVKKHYELLVKDIND 67 (86)
Q Consensus 45 ~vpgRT~~qc~~ry~~L~~dv~~ 67 (86)
.++|.|.++++.+|..+++.+..
T Consensus 61 ~l~gms~eeA~~~Yi~~v~~l~~ 83 (87)
T 2cb8_A 61 ELKGTSKEDAMKAYINKVEELKK 83 (87)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHHHHH
Confidence 35899999999999999988764
No 106
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=55.77 E-value=34 Score=21.68 Aligned_cols=40 Identities=8% Similarity=-0.036 Sum_probs=30.7
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 034697 21 NKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKD 64 (86)
Q Consensus 21 dk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~d 64 (86)
+..+..+|...+ .-.+..||+.+ |-|...|..|.+.|.+.
T Consensus 12 ~~~il~~L~~~~---~~s~~ela~~l-g~s~~tv~~~l~~L~~~ 51 (162)
T 2p5v_A 12 DIKILQVLQENG---RLTNVELSERV-ALSPSPCLRRLKQLEDA 51 (162)
T ss_dssp HHHHHHHHHHCT---TCCHHHHHHHH-TSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcC---CCCHHHHHHHH-CcCHHHHHHHHHHHHHC
Confidence 345556777654 34799999999 69999999999888654
No 107
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=55.76 E-value=24 Score=19.48 Aligned_cols=54 Identities=9% Similarity=0.150 Sum_probs=41.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Q 034697 13 GSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKDIND 67 (86)
Q Consensus 13 ~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~dv~~ 67 (86)
...+|.++...|+......+-.....=..||+.+ |-|..+|+.=|++-....+.
T Consensus 5 Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqNrR~k~kr 58 (67)
T 2k40_A 5 RTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKL-NLELDRIQIWFQNRRAKLKR 58 (67)
T ss_dssp SCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHH-TCCHHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-CcCHHHhhHhhHhHHHHHhH
Confidence 4578999999999998765533445667899999 69999999888766555443
No 108
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=55.31 E-value=23 Score=19.11 Aligned_cols=48 Identities=17% Similarity=0.197 Sum_probs=35.9
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Q 034697 12 SGSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKDIN 66 (86)
Q Consensus 12 ~~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~dv~ 66 (86)
.....|+.|.+.|.- +.. +..-..||+.+ |.|..-|+.|...+...+.
T Consensus 8 ~~~~L~~~e~~il~~-~~~-----g~s~~eIA~~l-~is~~tV~~~~~~~~~kl~ 55 (74)
T 1fse_A 8 SKPLLTKREREVFEL-LVQ-----DKTTKEIASEL-FISEKTVRNHISNAMQKLG 55 (74)
T ss_dssp CCCCCCHHHHHHHHH-HTT-----TCCHHHHHHHH-TSCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHH-HHc-----CCCHHHHHHHH-CCCHHHHHHHHHHHHHHHC
Confidence 345688888888876 321 23689999999 6899999988887766654
No 109
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=55.31 E-value=24 Score=19.43 Aligned_cols=50 Identities=8% Similarity=0.126 Sum_probs=34.4
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Q 034697 15 SWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKDIN 66 (86)
Q Consensus 15 ~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~dv~ 66 (86)
.-++.|..+|.-... +..+.+..+..||..+ |.|..-|+.+.......++
T Consensus 10 ~L~~~er~il~l~~~-l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKG-LIDGREHTLEEVGAYF-GVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHT-TTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHh-cccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHH
Confidence 346666666655432 1111245799999999 6999999998877777766
No 110
>3fp5_A Acyl-COA binding protein; ACBP, cacao disease, fatty acid metabolism, lipid binding protein; HET: MES; 1.61A {Moniliophthora perniciosa} SCOP: a.11.1.0
Probab=55.06 E-value=14 Score=23.30 Aligned_cols=24 Identities=21% Similarity=0.207 Sum_probs=20.9
Q ss_pred HcCCCCHHHHHHHHHHHHHHHhhh
Q 034697 45 AVSGKTVEDVKKHYELLVKDINDI 68 (86)
Q Consensus 45 ~vpgRT~~qc~~ry~~L~~dv~~i 68 (86)
.++|.|.++++.+|..+++.+...
T Consensus 67 ~l~gmS~eeA~~~YI~~v~~l~~~ 90 (106)
T 3fp5_A 67 SVEGTSKEVAYQKYVEKLLEILKK 90 (106)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HccCCCHHHHHHHHHHHHHHHhcc
Confidence 468999999999999999887764
No 111
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=54.85 E-value=24 Score=19.26 Aligned_cols=54 Identities=15% Similarity=0.118 Sum_probs=40.0
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Q 034697 12 SGSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKDIN 66 (86)
Q Consensus 12 ~~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~dv~ 66 (86)
....+|.++...|+......+--....=..||..+ |-|..+|+.=|++-....+
T Consensus 6 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l-~l~~~qV~~WFqNrR~k~k 59 (63)
T 2h1k_A 6 TRTAYTRAQLLELEKEFLFNKYISRPRRVELAVML-NLTERHIKIWFQNRRMKWK 59 (63)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-TCCHHHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHh-CcCHHHhhHHHHhhhhhhh
Confidence 45678999999999997765433345567899999 6999999887766544433
No 112
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=54.39 E-value=29 Score=19.95 Aligned_cols=54 Identities=11% Similarity=0.116 Sum_probs=39.9
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Q 034697 12 SGSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKDIN 66 (86)
Q Consensus 12 ~~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~dv~ 66 (86)
....+|.++...|+......+--....=..||..+ |-|..+|+.=|++-....+
T Consensus 21 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l-~l~~~qV~~WFqNrR~k~r 74 (81)
T 1fjl_A 21 SRTTFSASQLDELERAFERTQYPDIYTREELAQRT-NLTEARIQVWFQNRRARLR 74 (81)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-TCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH-CcCHHHHHHHHHHHhhhhh
Confidence 34679999999999998775533345567899999 6999999887766544333
No 113
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=53.88 E-value=26 Score=19.28 Aligned_cols=51 Identities=10% Similarity=0.029 Sum_probs=38.9
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Q 034697 12 SGSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVK 63 (86)
Q Consensus 12 ~~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~ 63 (86)
....+|.++...|+......+-.....=..||..+ |-|..+|+.=|++-..
T Consensus 6 ~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqNrR~ 56 (66)
T 1bw5_A 6 VRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMT-GLSPRVIRVWFQNKRC 56 (66)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHH-CcCHHHHHHHhHHHHH
Confidence 35678999999999998776533445567889999 6999999887765443
No 114
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=53.75 E-value=26 Score=19.25 Aligned_cols=44 Identities=7% Similarity=0.100 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Q 034697 16 WTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKDIN 66 (86)
Q Consensus 16 WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~dv~ 66 (86)
.|+.|..+|.- + + .+..-..||..+ |.|..-|+.|...+...++
T Consensus 17 L~~~e~~vl~l-~--~---~g~s~~eIA~~l-~is~~tV~~~~~r~~~kl~ 60 (79)
T 1x3u_A 17 LSERERQVLSA-V--V---AGLPNKSIAYDL-DISPRTVEVHRANVMAKMK 60 (79)
T ss_dssp HCHHHHHHHHH-H--T---TTCCHHHHHHHT-TSCHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHH-H--H---cCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHc
Confidence 45556655544 2 2 134678999999 6899999988887776655
No 115
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=53.74 E-value=25 Score=19.04 Aligned_cols=51 Identities=10% Similarity=0.123 Sum_probs=38.3
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Q 034697 12 SGSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVK 63 (86)
Q Consensus 12 ~~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~ 63 (86)
....+|.++...|+......+--....=..||..+ |-|..+|+.=|++-..
T Consensus 6 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqNrR~ 56 (61)
T 2hdd_A 6 PRTAFSSEQLARLKREFNENRYLTERRRQQLSSEL-GLNEAQIKIWFKNKRA 56 (61)
T ss_dssp -CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-TCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH-CcCHHHHHHHhhhhcc
Confidence 34678999999999998775533445667899999 6999999877765443
No 116
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=53.66 E-value=27 Score=19.40 Aligned_cols=54 Identities=7% Similarity=0.086 Sum_probs=40.9
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Q 034697 12 SGSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKDIN 66 (86)
Q Consensus 12 ~~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~dv~ 66 (86)
....+|.++...|+......+--....=..||..+ |-|..+|+.=|++-....+
T Consensus 10 ~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l-~l~~~qV~~WFqNrR~k~k 63 (70)
T 2da2_A 10 SRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLL-NLPTRVIVVWFQNARQKAR 63 (70)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHh-CCCHHHhHHhhHhhhHHHh
Confidence 45679999999999998776533445667899999 6999999887776544433
No 117
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=53.63 E-value=25 Score=19.09 Aligned_cols=49 Identities=16% Similarity=0.243 Sum_probs=33.1
Q ss_pred CHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Q 034697 17 TVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKDIND 67 (86)
Q Consensus 17 T~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~dv~~ 67 (86)
++.|...|.-... +....+..+..||+.+ |.|..-|+.+.......++.
T Consensus 7 ~~~er~il~l~~~-l~~~~g~s~~eIA~~l-gis~~tV~~~~~ra~~kLr~ 55 (68)
T 2p7v_B 7 TAREAKVLRMRFG-IDMNTDYTLEEVGKQF-DVTRERIRQIEAKALRKLRH 55 (68)
T ss_dssp CHHHHHHHHHHTT-TTSSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHGGGS
T ss_pred CHHHHHHHHHHHc-cCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHHH
Confidence 4555555544321 1001245799999999 69999999998887777764
No 118
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=53.57 E-value=34 Score=21.25 Aligned_cols=40 Identities=15% Similarity=0.194 Sum_probs=30.5
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 034697 21 NKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKD 64 (86)
Q Consensus 21 dk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~d 64 (86)
+..+..+|...+ .-.+..||+.+ |-|...|..|.+.|.+.
T Consensus 5 ~~~il~~L~~~~---~~~~~ela~~l-g~s~~tv~~~l~~L~~~ 44 (150)
T 2pn6_A 5 DLRILKILQYNA---KYSLDEIAREI-RIPKATLSYRIKKLEKD 44 (150)
T ss_dssp HHHHHHHHTTCT---TSCHHHHHHHH-TSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcC---CCCHHHHHHHH-CcCHHHHHHHHHHHHHC
Confidence 445556666543 45799999999 69999999999888654
No 119
>1st7_A ACBP, acyl-COA-binding protein; four helix bundle, transport protein; NMR {Saccharomyces cerevisiae}
Probab=53.50 E-value=11 Score=22.74 Aligned_cols=22 Identities=36% Similarity=0.566 Sum_probs=19.6
Q ss_pred cCCCCHHHHHHHHHHHHHHHhh
Q 034697 46 VSGKTVEDVKKHYELLVKDIND 67 (86)
Q Consensus 46 vpgRT~~qc~~ry~~L~~dv~~ 67 (86)
++|.|.++++.+|..+++.+..
T Consensus 61 l~gms~eeA~~~YI~~v~~l~~ 82 (86)
T 1st7_A 61 LKGKSQEDAEKEYIALVDQLIA 82 (86)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHhh
Confidence 5899999999999999988764
No 120
>2lbb_A Acyl COA binding protein; protein binding, structural genomi seattle structural genomics center for infectious disease,; NMR {Babesia bovis}
Probab=53.20 E-value=15 Score=22.82 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=19.4
Q ss_pred cCCCCHHHHHHHHHHHHHHHhh
Q 034697 46 VSGKTVEDVKKHYELLVKDIND 67 (86)
Q Consensus 46 vpgRT~~qc~~ry~~L~~dv~~ 67 (86)
++|.|.++++.+|..+++.+..
T Consensus 71 l~gmS~eeAm~~YI~lv~~l~~ 92 (96)
T 2lbb_A 71 LRGMSTESAKEAYVKLLDTLAP 92 (96)
T ss_dssp TTTCCHHHHHHHHHHHHHHHCG
T ss_pred hcCCCHHHHHHHHHHHHHHHhc
Confidence 4899999999999999988753
No 121
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=52.79 E-value=30 Score=19.74 Aligned_cols=46 Identities=15% Similarity=0.150 Sum_probs=34.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Q 034697 14 SSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKDIN 66 (86)
Q Consensus 14 ~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~dv~ 66 (86)
...|..|.++|.-. + .+..-..||+.+ |.|..-|+.|...+...++
T Consensus 20 ~~Lt~~e~~vl~l~---~---~g~s~~eIA~~l-~is~~tV~~~l~r~~~kL~ 65 (82)
T 1je8_A 20 NQLTPRERDILKLI---A---QGLPNKMIARRL-DITESTVKVHVKHMLKKMK 65 (82)
T ss_dssp GGSCHHHHHHHHHH---T---TTCCHHHHHHHH-TSCHHHHHHHHHHHHHHTT
T ss_pred ccCCHHHHHHHHHH---H---cCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHc
Confidence 45788888877763 2 124689999999 6999999998887776654
No 122
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=52.43 E-value=34 Score=22.31 Aligned_cols=40 Identities=8% Similarity=0.028 Sum_probs=31.2
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 034697 21 NKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKD 64 (86)
Q Consensus 21 dk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~d 64 (86)
|..+..+|..-+ .-.+..||+.+ |-|...|..|.+.|.+.
T Consensus 19 d~~IL~~L~~~~---~~s~~eLA~~l-glS~~tv~~~l~~L~~~ 58 (171)
T 2ia0_A 19 DRNILRLLKKDA---RLTISELSEQL-KKPESTIHFRIKKLQER 58 (171)
T ss_dssp HHHHHHHHHHCT---TCCHHHHHHHH-TSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcC---CCCHHHHHHHH-CcCHHHHHHHHHHHHHC
Confidence 445666777654 35799999999 69999999999988654
No 123
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=52.10 E-value=26 Score=18.84 Aligned_cols=48 Identities=19% Similarity=0.094 Sum_probs=35.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHH
Q 034697 13 GSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELL 61 (86)
Q Consensus 13 ~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L 61 (86)
...+|.++...|+......+--....=..||..+ |-|..||..=|++-
T Consensus 9 Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~-~l~~~qV~~WFqNr 56 (61)
T 1akh_A 9 KSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKC-GITPLQVRVWFINK 56 (61)
T ss_dssp ---CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-TSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHH-CcCHHHHHHHHHHH
Confidence 4578999999999998776543445667899999 69999998766543
No 124
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=50.87 E-value=11 Score=25.26 Aligned_cols=21 Identities=19% Similarity=0.572 Sum_probs=18.3
Q ss_pred HHHHHHHcCCCCHHHHHHHHH
Q 034697 39 WDNVAKAVSGKTVEDVKKHYE 59 (86)
Q Consensus 39 W~~IA~~vpgRT~~qc~~ry~ 59 (86)
=..||..+.|||++|+|+.|.
T Consensus 126 c~~vA~~ikgktpeeiR~~f~ 146 (169)
T 3v7d_A 126 CKVVAEMIRGRSPEEIRRTFN 146 (169)
T ss_dssp HHHHHHHHTTCCHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHcC
Confidence 467899999999999999775
No 125
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.52 E-value=31 Score=19.21 Aligned_cols=52 Identities=12% Similarity=0.052 Sum_probs=39.2
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 034697 12 SGSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKD 64 (86)
Q Consensus 12 ~~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~d 64 (86)
....+|.++...|+......+--....=..||..+ |-|..+|+.=|++-...
T Consensus 10 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqNrR~k 61 (70)
T 2djn_A 10 PRTIYSSFQLAALQRRFQKTQYLALPERAELAASL-GLTQTQVKIWFQNKRSK 61 (70)
T ss_dssp SSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHS-SCCHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHh-CCCHHHHHHHHHHHhhh
Confidence 35679999999999997765432344557889999 69999998877765444
No 126
>2wh5_A Acyl-COA-binding domain-containing protein 4; alternative splicing, fatty acid metabolism, lipid transport, lipid binding protein; HET: STE ST9 COA; 2.60A {Homo sapiens}
Probab=50.37 E-value=20 Score=22.61 Aligned_cols=30 Identities=17% Similarity=0.295 Sum_probs=23.1
Q ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHhhh
Q 034697 38 RWDNVAKAVSGKTVEDVKKHYELLVKDINDI 68 (86)
Q Consensus 38 rW~~IA~~vpgRT~~qc~~ry~~L~~dv~~i 68 (86)
+|..=. .++|.|.++++.+|..+++.+...
T Consensus 65 Kw~AW~-~l~gms~eeA~~~YI~~v~~l~~k 94 (106)
T 2wh5_A 65 KWDAWN-SLGKMSREEAMSAYITEMKLVAQK 94 (106)
T ss_dssp HHHHHH-TTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HhcCCCHHHHHHHHHHHHHHHHHH
Confidence 455433 358999999999999998887753
No 127
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=49.76 E-value=32 Score=19.11 Aligned_cols=55 Identities=13% Similarity=0.079 Sum_probs=40.4
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Q 034697 12 SGSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKDIND 67 (86)
Q Consensus 12 ~~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~dv~~ 67 (86)
....+|.++...|+......+--....=..||..+ |-|..+|+.=|++-....+.
T Consensus 5 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqNRR~k~kk 59 (68)
T 1zq3_P 5 TRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKL-ALGTAQVKIWFKNRRRRHKI 59 (68)
T ss_dssp CSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHH-TSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHh-CcCHHHhhHhhHHHHHHHHH
Confidence 34678999999999997765533445668899999 69999998777654444333
No 128
>3flv_A Acyl-COA-binding domain-containing protein 5; lipid binding, structural genomics, struct genomics consortium, SGC, lipid-binding, membrane; HET: STE COA; 1.70A {Homo sapiens}
Probab=49.42 E-value=21 Score=23.10 Aligned_cols=23 Identities=22% Similarity=0.211 Sum_probs=19.9
Q ss_pred HcCCCCHHHHHHHHHHHHHHHhh
Q 034697 45 AVSGKTVEDVKKHYELLVKDIND 67 (86)
Q Consensus 45 ~vpgRT~~qc~~ry~~L~~dv~~ 67 (86)
.++|.|.++++.+|..+++.+..
T Consensus 87 ~l~gmS~eeAm~~YI~~v~~l~~ 109 (119)
T 3flv_A 87 SLGDMTKEEAMIAYVEEMKKIIE 109 (119)
T ss_dssp HTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HccCCCHHHHHHHHHHHHHHHHh
Confidence 46899999999999999888764
No 129
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=48.99 E-value=9.1 Score=24.98 Aligned_cols=20 Identities=35% Similarity=0.694 Sum_probs=17.4
Q ss_pred HHHHHHcCCCCHHHHHHHHH
Q 034697 40 DNVAKAVSGKTVEDVKKHYE 59 (86)
Q Consensus 40 ~~IA~~vpgRT~~qc~~ry~ 59 (86)
..||..+-|||++||+..|.
T Consensus 120 ~~va~~i~gkt~eeir~~f~ 139 (159)
T 2ast_A 120 KTVANMIKGKTPEEIRKTFN 139 (159)
T ss_dssp HHHHHHHSSCCHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHcC
Confidence 46899999999999999775
No 130
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=48.13 E-value=33 Score=21.74 Aligned_cols=35 Identities=9% Similarity=0.186 Sum_probs=24.4
Q ss_pred chHHHHHHHcCC-CC----HHHHHHHHHHHHHHHhhhhcC
Q 034697 37 DRWDNVAKAVSG-KT----VEDVKKHYELLVKDINDIEAG 71 (86)
Q Consensus 37 ~rW~~IA~~vpg-RT----~~qc~~ry~~L~~dv~~ie~g 71 (86)
..|..||..|+- .+ ..+++.+|.+++-.......+
T Consensus 74 k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~yE~~~~~ 113 (128)
T 1c20_A 74 KLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKN 113 (128)
T ss_dssp TTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHHHHHHHHC
T ss_pred CcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHHHHHc
Confidence 589999999973 22 567888898876555444443
No 131
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=46.55 E-value=34 Score=18.58 Aligned_cols=48 Identities=15% Similarity=0.179 Sum_probs=35.5
Q ss_pred CCCCCCHHHHHHHHHHH---HhcCCCCCchHHHHHHHcCCCCHHHHHHHHHH
Q 034697 12 SGSSWTVKQNKQFETAL---AFYDKDTPDRWDNVAKAVSGKTVEDVKKHYEL 60 (86)
Q Consensus 12 ~~~~WT~eEdk~Le~al---~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~ 60 (86)
....+|.++-..|+..+ ...+--....=..||..+ |-|..||..=|++
T Consensus 6 ~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~-~L~~~qV~~WFqN 56 (64)
T 1du6_A 6 EGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKC-GITVSQVSNWFGN 56 (64)
T ss_dssp CCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHH-TSCHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHH-CcCHHHHHHHHHH
Confidence 45678999999999998 333322345567899999 6999999887654
No 132
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=46.40 E-value=34 Score=18.41 Aligned_cols=49 Identities=12% Similarity=0.065 Sum_probs=37.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHH
Q 034697 13 GSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLV 62 (86)
Q Consensus 13 ~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~ 62 (86)
...+|.++...|+......+-.....=..||..+ |-|..+|+.=|++-.
T Consensus 5 Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqNrR 53 (60)
T 1jgg_A 5 RTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQL-NLPESTIKVWFQNRR 53 (60)
T ss_dssp CCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHH-TSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH-CcCHHHHHHhhHHHH
Confidence 4578999999999998776533445667899999 699999988776543
No 133
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=46.21 E-value=51 Score=20.46 Aligned_cols=40 Identities=8% Similarity=-0.027 Sum_probs=30.9
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 034697 21 NKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKD 64 (86)
Q Consensus 21 dk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~d 64 (86)
|..+..+|...+ .-....||+.+ |-|...|..|.+.|.+.
T Consensus 7 d~~il~~L~~~~---~~s~~ela~~l-g~s~~tv~~~l~~L~~~ 46 (144)
T 2cfx_A 7 DLNIIEELKKDS---RLSMRELGRKI-KLSPPSVTERVRQLESF 46 (144)
T ss_dssp HHHHHHHHHHCS---CCCHHHHHHHH-TCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcC---CCCHHHHHHHH-CcCHHHHHHHHHHHHHC
Confidence 445666777654 35799999999 69999999999888653
No 134
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=45.75 E-value=7.8 Score=24.58 Aligned_cols=30 Identities=13% Similarity=0.230 Sum_probs=23.2
Q ss_pred chHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Q 034697 37 DRWDNVAKAVSGKTVEDVKKHYELLVKDIND 67 (86)
Q Consensus 37 ~rW~~IA~~vpgRT~~qc~~ry~~L~~dv~~ 67 (86)
-....||+.+ |.|...|+.+.......++.
T Consensus 152 ~s~~eIA~~l-gis~~tV~~~l~ra~~~Lr~ 181 (184)
T 2q1z_A 152 LTHRELAAET-GLPLGTIKSRIRLALDRLRQ 181 (184)
T ss_dssp CSSCCSTTTC-CCCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHH-CcCHHHHHHHHHHHHHHHHH
Confidence 4567788888 68888999888877776664
No 135
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=45.04 E-value=60 Score=20.93 Aligned_cols=31 Identities=16% Similarity=0.139 Sum_probs=24.6
Q ss_pred CchHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Q 034697 36 PDRWDNVAKAVSGKTVEDVKKHYELLVKDIND 67 (86)
Q Consensus 36 ~~rW~~IA~~vpgRT~~qc~~ry~~L~~dv~~ 67 (86)
+-....||+.+ |.|...|+.+.......++.
T Consensus 203 g~s~~EIA~~l-gis~~~V~~~~~ra~~~Lr~ 233 (239)
T 1rp3_A 203 ELPAKEVAKIL-ETSVSRVSQLKAKALERLRE 233 (239)
T ss_dssp CCCHHHHHHHT-TSCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHh-CCCHHHHHHHHHHHHHHHHH
Confidence 45789999999 69999999888776666654
No 136
>1n00_A Annexin GH1; membrane-binding, calcium-binding, membrane protein; 2.10A {Gossypium hirsutum} SCOP: a.65.1.1 PDB: 3brx_A 1ycn_A 2q4c_A 1dk5_A
Probab=45.00 E-value=85 Score=22.69 Aligned_cols=66 Identities=15% Similarity=0.192 Sum_probs=39.2
Q ss_pred CCCCcCCCCCCCCCCCCHHHHH-HHHHHHHhcCCCCCchHHHHHHHcCCCCHHHH---HHHHHH-----HHHHHhhhhc
Q 034697 1 MASNTMTSSRSSGSSWTVKQNK-QFETALAFYDKDTPDRWDNVAKAVSGKTVEDV---KKHYEL-----LVKDINDIEA 70 (86)
Q Consensus 1 ~~~~~~~~~~~~~~~WT~eEdk-~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc---~~ry~~-----L~~dv~~ie~ 70 (86)
|.|..|.+--.......++.|. .|.+|+.-++. .=..|-+.+.+||..|. +..|+. |.++|+.--+
T Consensus 1 ~~~g~~~t~~~~~~~~~~~~DA~~L~~A~kG~Gt----de~~lieIL~~rs~~q~~~I~~aY~~~y~~~L~~dl~se~s 75 (321)
T 1n00_A 1 MAHHHHATLTVPTTVPSVSEDCEQLRKAFSGWGT----NEGLIIDILGHRNAEQRNLIRKTYAETYGEDLLKALDKELS 75 (321)
T ss_dssp ---CCCCCCCCCSSCCCHHHHHHHHHHHTSSSSC----CHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCHHHHHHHHSC
T ss_pred CCCCCCCCeeecCCCCCHHHHHHHHHHHhCCCCC----CHHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHhcC
Confidence 4555555442333346677666 67778776643 24677788889999885 456764 5666665333
No 137
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=44.84 E-value=41 Score=18.95 Aligned_cols=58 Identities=16% Similarity=0.106 Sum_probs=43.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Q 034697 9 SRSSGSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKDIND 67 (86)
Q Consensus 9 ~~~~~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~dv~~ 67 (86)
..-....+|.++...|+......+--....=..||..+ |-|..+|+.=|++-....+.
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l-~l~~~qV~vWFqNRR~k~kk 64 (73)
T 2l7z_A 7 GRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATT-NLSERQVTIWFQNRRVKEKK 64 (73)
T ss_dssp CCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHH-TSCSHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHH-CCCHHHHHHHHHHHhHHHHH
Confidence 33456789999999999998775533445667899999 69999998877765554443
No 138
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=44.70 E-value=63 Score=21.05 Aligned_cols=53 Identities=11% Similarity=0.081 Sum_probs=40.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Q 034697 13 GSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKDIN 66 (86)
Q Consensus 13 ~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~dv~ 66 (86)
...+|.++-..|+......+.-....=..||..+ |-|..+|+.=|++-....+
T Consensus 105 Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l-~L~~~qV~vWFqNRR~k~k 157 (160)
T 1e3o_C 105 RTSIETNIRVALEKSFMENQKPTSEDITLIAEQL-NMEKEVIRVWFSNRRQKEK 157 (160)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-TCCHHHHHHHHHHHHHHHT
T ss_pred ccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHH-CCChHHhhHhhHHhhhhhh
Confidence 4679999999999998776543445667899999 6999999887776554433
No 139
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.46 E-value=47 Score=19.58 Aligned_cols=56 Identities=14% Similarity=0.059 Sum_probs=41.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHhhhhc
Q 034697 14 SSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKDINDIEA 70 (86)
Q Consensus 14 ~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~dv~~ie~ 70 (86)
...|.++...|+......+--....=..||..+ |-|..+|+.=|++-....+..+.
T Consensus 18 k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~-~l~~~qV~vWFqNRR~k~r~~~~ 73 (89)
T 2dmp_A 18 KEKTQGQVKILEDSFLKSSFPTQAELDRLRVET-KLSRREIDSWFSERRKLRDSMEQ 73 (89)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-TCCHHHHHHHHHHHHHHHHTSCS
T ss_pred ccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHh-CCCHHhccHhhHhHHHHHHHHhH
Confidence 458999999999998775432334556899999 69999999888877666555443
No 140
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=44.46 E-value=48 Score=19.68 Aligned_cols=54 Identities=15% Similarity=0.161 Sum_probs=40.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Q 034697 13 GSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKDIND 67 (86)
Q Consensus 13 ~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~dv~~ 67 (86)
...+|.++...|+......+--....=..||..+ |-|..+|+.=|++-....+.
T Consensus 38 Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l-~l~~~qV~vWFqNRR~k~kk 91 (97)
T 1b72_A 38 RTNFTTRQLTELEKEFHFNKYLSRARRVEIAATL-ELNETQVKIWFQNRRMKQKK 91 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHH-TCCHHHHHHHHHHHHHHHHH
T ss_pred CcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHh-CCCHHHhHHHHHHHhHHHhH
Confidence 5679999999999997765432334557899999 69999999877765544443
No 141
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=44.32 E-value=47 Score=19.51 Aligned_cols=47 Identities=9% Similarity=0.030 Sum_probs=34.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Q 034697 13 GSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKDIN 66 (86)
Q Consensus 13 ~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~dv~ 66 (86)
...-|..|..+|.-...- ..-..||..+ |.|..-|+.|...+...+.
T Consensus 27 ~~~Lt~rE~~Vl~l~~~G------~s~~eIA~~L-~iS~~TV~~~~~~i~~Klg 73 (90)
T 3ulq_B 27 QDVLTPRECLILQEVEKG------FTNQEIADAL-HLSKRSIEYSLTSIFNKLN 73 (90)
T ss_dssp --CCCHHHHHHHHHHHTT------CCHHHHHHHH-TCCHHHHHHHHHHHHHHTT
T ss_pred ccCCCHHHHHHHHHHHcC------CCHHHHHHHH-CcCHHHHHHHHHHHHHHHC
Confidence 456788888887765422 3578999999 6999999998887766543
No 142
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=43.85 E-value=47 Score=19.41 Aligned_cols=47 Identities=13% Similarity=0.000 Sum_probs=34.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Q 034697 14 SSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKDIND 67 (86)
Q Consensus 14 ~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~dv~~ 67 (86)
...|..|.++|.-.+. +..-..||..+ |.|..-|+.|...+...++.
T Consensus 26 ~~Lt~~e~~vl~l~~~------g~s~~eIA~~l-~is~~tV~~~l~r~~~kL~~ 72 (95)
T 3c57_A 26 SGLTDQERTLLGLLSE------GLTNKQIADRM-FLAEKTVKNYVSRLLAKLGM 72 (95)
T ss_dssp -CCCHHHHHHHHHHHT------TCCHHHHHHHH-TCCHHHHHHHHHHHHHHHTC
T ss_pred hcCCHHHHHHHHHHHc------CCCHHHHHHHH-CcCHHHHHHHHHHHHHHHcC
Confidence 3567777777666421 23578999999 68999999988888777764
No 143
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=43.72 E-value=41 Score=18.59 Aligned_cols=55 Identities=13% Similarity=0.077 Sum_probs=40.8
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Q 034697 12 SGSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKDIND 67 (86)
Q Consensus 12 ~~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~dv~~ 67 (86)
....+|.++...|+......+--....=..||..+ |-|..+|+.=|++-....+.
T Consensus 6 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqNrR~k~rk 60 (68)
T 1yz8_P 6 QRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWT-NLTEARVRVWFKNRRAKWRK 60 (68)
T ss_dssp SCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHT-TSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH-CcCHHHHHHHHHHHhHHHHH
Confidence 35678999999999997765433344567899999 69999998877765544443
No 144
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=42.45 E-value=60 Score=20.19 Aligned_cols=48 Identities=8% Similarity=0.079 Sum_probs=36.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHHH
Q 034697 14 SSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVS-GKTVEDVKKHYELLVKD 64 (86)
Q Consensus 14 ~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vp-gRT~~qc~~ry~~L~~d 64 (86)
..|-..=|..+...|...+ +-.-..||+.+. |-|...|.+|-+.|.+.
T Consensus 8 ~~~md~~d~~IL~~L~~~g---~~s~~eLA~~l~~giS~~aVs~rL~~Le~~ 56 (111)
T 3b73_A 8 GSWMTIWDDRILEIIHEEG---NGSPKELEDRDEIRISKSSVSRRLKKLADH 56 (111)
T ss_dssp CTTCCHHHHHHHHHHHHHS---CBCHHHHHTSTTCCSCHHHHHHHHHHHHHT
T ss_pred hhhcCHHHHHHHHHHHHcC---CCCHHHHHHHHhcCCCHHHHHHHHHHHHHC
Confidence 3565555566666777654 457899999996 69999999999888654
No 145
>2cqu_A Peroxisomal D3,D2-enoyl-COA isomerase; acyl-COA binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.41 E-value=51 Score=21.04 Aligned_cols=22 Identities=18% Similarity=0.314 Sum_probs=19.8
Q ss_pred cCCCCHHHHHHHHHHHHHHHhh
Q 034697 46 VSGKTVEDVKKHYELLVKDIND 67 (86)
Q Consensus 46 vpgRT~~qc~~ry~~L~~dv~~ 67 (86)
++|.|.++++.+|..+++.+..
T Consensus 76 l~gms~eeAm~~YI~lv~~l~~ 97 (116)
T 2cqu_A 76 LGSLPKEAARQNYVDLVSSLSP 97 (116)
T ss_dssp HCSCCHHHHHHHHHHHHHHHCS
T ss_pred hcCCCHHHHHHHHHHHHHHHcc
Confidence 4899999999999999998874
No 146
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=42.36 E-value=48 Score=18.99 Aligned_cols=51 Identities=6% Similarity=0.040 Sum_probs=38.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 034697 13 GSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKD 64 (86)
Q Consensus 13 ~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~d 64 (86)
...+|.++...|+.+....+--....=..||..+ |-|..+|+.=|++-...
T Consensus 26 Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~vWFqNRR~k 76 (84)
T 2kt0_A 26 RTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNIL-NLSYKQVKTWFQNQRMK 76 (84)
T ss_dssp SSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHT-TCCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHH
Confidence 4569999999999998765432334457889999 69999998877665443
No 147
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=42.21 E-value=44 Score=18.55 Aligned_cols=54 Identities=13% Similarity=0.129 Sum_probs=40.9
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Q 034697 12 SGSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKDIN 66 (86)
Q Consensus 12 ~~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~dv~ 66 (86)
....+|.++...|+......+--....=..||..+ |-|..+|+.=|++-....+
T Consensus 10 ~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqNrR~k~r 63 (70)
T 2e1o_A 10 GQVRFSNDQTIELEKKFETQKYLSPPERKRLAKML-QLSERQVKTWFQNRRAKWR 63 (70)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHH-CCCHHHhhHhhHhhHhhcC
Confidence 35679999999999998776533445667899999 6999999987776544433
No 148
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=41.97 E-value=55 Score=19.66 Aligned_cols=46 Identities=7% Similarity=0.084 Sum_probs=33.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 034697 13 GSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKDI 65 (86)
Q Consensus 13 ~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~dv 65 (86)
...-|+.|.++|.-.+.- ..-..||+.+ |.|..-|+.+...+...+
T Consensus 32 ~~~Lt~re~~Vl~l~~~G------~s~~EIA~~L-~iS~~TV~~~l~ri~~KL 77 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEG------FLVTEIAKKL-NRSIKTISSQKKSAMMKL 77 (99)
T ss_dssp SSSCCHHHHHHHHHHHHT------CCHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHcC------CCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 456788888888664322 3579999999 689998888877655443
No 149
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=41.04 E-value=42 Score=17.96 Aligned_cols=49 Identities=12% Similarity=0.051 Sum_probs=36.7
Q ss_pred CCCCHHHHHHHHHHHHh---cCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Q 034697 14 SSWTVKQNKQFETALAF---YDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVK 63 (86)
Q Consensus 14 ~~WT~eEdk~Le~al~~---~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~ 63 (86)
..+|.++-..|+..+.. .+--....=..||+.+ |-|..||..=|++-..
T Consensus 3 ~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~-gl~~~qV~~WFqNrR~ 54 (60)
T 1k61_A 3 HRFTKENVRILESWFAKNIENPYLDTKGLENLMKNT-SLSRIQIKNWVSNRRR 54 (60)
T ss_dssp CSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHH-CcCHHHHHHHHHHHHc
Confidence 46899999999999877 4422334456789999 6999999887765443
No 150
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=40.53 E-value=12 Score=23.10 Aligned_cols=26 Identities=23% Similarity=0.664 Sum_probs=19.1
Q ss_pred chHHHHHHHcCC-C----CHHHHHHHHHHHH
Q 034697 37 DRWDNVAKAVSG-K----TVEDVKKHYELLV 62 (86)
Q Consensus 37 ~rW~~IA~~vpg-R----T~~qc~~ry~~L~ 62 (86)
..|..||..|+- . ...+++.+|.+++
T Consensus 55 ~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L 85 (107)
T 1ig6_A 55 RQWKHIYDELGGNPGSTSAATCTRRHYERLI 85 (107)
T ss_dssp TTHHHHHHHHTCCTTCTTTTTTHHHHHHHHT
T ss_pred CcHHHHHHHhCCCCCCCcHHHHHHHHHHHHH
Confidence 589999999973 2 1356788887754
No 151
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=40.25 E-value=50 Score=18.69 Aligned_cols=52 Identities=23% Similarity=0.195 Sum_probs=38.3
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 034697 12 SGSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKD 64 (86)
Q Consensus 12 ~~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~d 64 (86)
....+|.++...|+......+--....=..||..+ |-|..+|+.=|++-...
T Consensus 16 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l-~l~~~qV~vWFqNRR~k 67 (77)
T 1puf_A 16 KRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLL-NLTERQVKIWFQNRRMK 67 (77)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 34679999999999997765432344557899999 69999998766654433
No 152
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.09 E-value=48 Score=18.35 Aligned_cols=54 Identities=13% Similarity=0.066 Sum_probs=41.0
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Q 034697 12 SGSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKDIN 66 (86)
Q Consensus 12 ~~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~dv~ 66 (86)
....+|.++...|+......+--....=..||..+ |-|..+|+.=|++-....+
T Consensus 10 ~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l-~l~~~qV~~WFqNrR~k~r 63 (70)
T 2dmu_A 10 HRTIFTDEQLEALENLFQETKYPDVGTREQLARKV-HLREEKVEVWFKNRRAKWR 63 (70)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-TCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH-CCCHHHeehcccccccccc
Confidence 45679999999999998776533445667899999 6999999987766544433
No 153
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=40.07 E-value=37 Score=19.03 Aligned_cols=37 Identities=11% Similarity=0.060 Sum_probs=28.2
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHH
Q 034697 22 KQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHY 58 (86)
Q Consensus 22 k~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry 58 (86)
++|...+..++....-.|..||+.-.|-|.-++..-.
T Consensus 10 ~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~ 46 (78)
T 3kw6_A 10 DILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVC 46 (78)
T ss_dssp HHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHH
T ss_pred HHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHH
Confidence 4666667777644456799999999999999977643
No 154
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=40.06 E-value=49 Score=18.46 Aligned_cols=53 Identities=11% Similarity=0.080 Sum_probs=36.4
Q ss_pred CCCCCHHHHHHHHHHHH---hcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Q 034697 13 GSSWTVKQNKQFETALA---FYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKDIN 66 (86)
Q Consensus 13 ~~~WT~eEdk~Le~al~---~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~dv~ 66 (86)
.+.+|.++-..|+..+. ..|--+...=..||..+ |-|..||+.=|++-....+
T Consensus 2 ~g~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~-~l~~~qV~~WFqNrR~r~k 57 (67)
T 3k2a_A 2 SGIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDT-GLTILQVNNWFINARRRIV 57 (67)
T ss_dssp ----CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHH-TCCHHHHHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHh-CcCHHHhhhhhHHHHHHHh
Confidence 45788999999999988 33322344567899999 7999999987776555444
No 155
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=39.53 E-value=53 Score=18.76 Aligned_cols=31 Identities=13% Similarity=0.242 Sum_probs=25.3
Q ss_pred CchHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Q 034697 36 PDRWDNVAKAVSGKTVEDVKKHYELLVKDIND 67 (86)
Q Consensus 36 ~~rW~~IA~~vpgRT~~qc~~ry~~L~~dv~~ 67 (86)
+-.+..||..+ |.|..-|+.+.......++.
T Consensus 38 ~~s~~EIA~~l-gis~~tV~~~~~ra~~kLr~ 68 (87)
T 1tty_A 38 PKTLEEVGQYF-NVTRERIRQIEVKALRKLRH 68 (87)
T ss_dssp CCCHHHHHHHH-TCCHHHHHHHHHHHHHHHBT
T ss_pred CCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHH
Confidence 45799999999 69999999988777666654
No 156
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=38.78 E-value=42 Score=19.32 Aligned_cols=46 Identities=15% Similarity=0.128 Sum_probs=32.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Q 034697 14 SSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKDIN 66 (86)
Q Consensus 14 ~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~dv~ 66 (86)
...|+.|-.+|.-.+. +..-..||..+ |.|..-|+.|...+...++
T Consensus 28 ~~Lt~~e~~vl~l~~~------g~s~~eIA~~l-~is~~tV~~~l~r~~~kL~ 73 (91)
T 2rnj_A 28 EMLTEREMEILLLIAK------GYSNQEIASAS-HITIKTVKTHVSNILSKLE 73 (91)
T ss_dssp GGCCSHHHHHHHHHHT------TCCTTHHHHHH-TCCHHHHHHHHHHHHHHTT
T ss_pred hcCCHHHHHHHHHHHc------CCCHHHHHHHH-CcCHHHHHHHHHHHHHHHC
Confidence 3467777777765321 23567999999 6899999998877766654
No 157
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=38.39 E-value=83 Score=20.68 Aligned_cols=54 Identities=13% Similarity=0.059 Sum_probs=39.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Q 034697 13 GSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKDIND 67 (86)
Q Consensus 13 ~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~dv~~ 67 (86)
...+|.++-..|+......+.-....=..||..+ |-|..+|+.=|++-....+.
T Consensus 103 Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l-~L~~~qV~vWFqNRR~k~kr 156 (164)
T 2xsd_C 103 RTSIEVGVKGALESHFLKCPKPSAHEITGLADSL-QLEKEVVRVWFCNRRQKEKR 156 (164)
T ss_dssp ---CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-TCCHHHHHHHHHHHHHHHTB
T ss_pred ceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-CCChhhhhhhhHHhhHHHhh
Confidence 4579999999999998776543445667899999 69999999888776555443
No 158
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=38.21 E-value=71 Score=19.81 Aligned_cols=40 Identities=18% Similarity=0.179 Sum_probs=30.2
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 034697 21 NKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKD 64 (86)
Q Consensus 21 dk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~d 64 (86)
|..+..+|...+ .-....||+.+ |-|...|..|.+.|.+.
T Consensus 9 ~~~iL~~L~~~~---~~s~~ela~~l-g~s~~tv~~~l~~L~~~ 48 (150)
T 2w25_A 9 DRILVRELAADG---RATLSELATRA-GLSVSAVQSRVRRLESR 48 (150)
T ss_dssp HHHHHHHHHHCT---TCCHHHHHHHH-TSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcC---CCCHHHHHHHH-CcCHHHHHHHHHHHHHC
Confidence 345555666643 35799999999 69999999999888654
No 159
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=38.05 E-value=55 Score=18.51 Aligned_cols=53 Identities=13% Similarity=0.052 Sum_probs=39.8
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 034697 12 SGSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKDI 65 (86)
Q Consensus 12 ~~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~dv 65 (86)
....+|.++...|+......+--....=..||..+ |-|..+|+.=|++-....
T Consensus 12 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqNRR~k~ 64 (77)
T 1nk2_P 12 RRVLFTKAQTYELERRFRQQRYLSAPEREHLASLI-RLTPTQVKIWFQNHRYKT 64 (77)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHT-TCCHHHHHHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHh-CCCHHHHHHHhHHhhcch
Confidence 35679999999999998775533445567899999 699999988776544333
No 160
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=37.01 E-value=48 Score=17.56 Aligned_cols=48 Identities=19% Similarity=0.115 Sum_probs=34.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHH
Q 034697 14 SSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLV 62 (86)
Q Consensus 14 ~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~ 62 (86)
..+|.++-..|+......+--....=..||..+ |-|..+|+.=|++-.
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l-~l~~~qV~~WFqNRR 49 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKAL-RMTDAQVKTWFQNRR 49 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-TCCHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHh-CcCHHHhhHhhHHhh
Confidence 357899999999987765432334456789999 699999987666543
No 161
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=36.66 E-value=84 Score=20.19 Aligned_cols=51 Identities=10% Similarity=0.080 Sum_probs=39.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 034697 13 GSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKD 64 (86)
Q Consensus 13 ~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~d 64 (86)
...+|.++-..|+......+--....=..||..+ |-|..+|+.=|++-...
T Consensus 91 Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l-~L~~~qV~vWFqNRR~k 141 (146)
T 1au7_A 91 RTTISIAAKDALERHFGEHSKPSSQEIMRMAEEL-NLEKEVVRVWFCNRRQR 141 (146)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred CcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHh-CCChhhchhhhHhhhhh
Confidence 5679999999999998776543445667899999 69999998877665443
No 162
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=36.28 E-value=86 Score=20.23 Aligned_cols=53 Identities=8% Similarity=0.098 Sum_probs=41.3
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 034697 12 SGSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKDI 65 (86)
Q Consensus 12 ~~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~dv 65 (86)
....+|.++-..|+..+...+--....=..||..+ |-|..+|+.=|++-....
T Consensus 100 ~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l-~L~~~qV~~WFqNrR~r~ 152 (164)
T 2d5v_A 100 PRLVFTDVQRRTLHAIFKENKRPSKELQITISQQL-GLELSTVSNFFMNARRRS 152 (164)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-TCCHHHHHHHHHHHHHTS
T ss_pred CCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-CcCHHHhhhcChhhhccc
Confidence 35679999999999998876543455667899999 699999998887655443
No 163
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=35.89 E-value=63 Score=18.56 Aligned_cols=52 Identities=12% Similarity=0.106 Sum_probs=37.5
Q ss_pred CCCCCHHHHHHHHHHH---HhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 034697 13 GSSWTVKQNKQFETAL---AFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKDI 65 (86)
Q Consensus 13 ~~~WT~eEdk~Le~al---~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~dv 65 (86)
...+|.++...|+..+ ...+--....=..||..+ |-|..||+.=|++-....
T Consensus 5 R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~-~l~~~qV~~WFqNrR~r~ 59 (87)
T 1b72_B 5 RRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKC-GITVSQVSNWFGNKRIRY 59 (87)
T ss_dssp CCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHH-CcCHHHHHHHHHHHHHHh
Confidence 4578999999999998 333322345567899999 699999998776544333
No 164
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.60 E-value=64 Score=18.22 Aligned_cols=57 Identities=14% Similarity=0.133 Sum_probs=41.6
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHhhhh
Q 034697 12 SGSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKDINDIE 69 (86)
Q Consensus 12 ~~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~dv~~ie 69 (86)
-....|.++-..|+......+--....=..||..+ |-|..+|+.=|++-....+..+
T Consensus 10 kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l-~l~~~qV~~WFqNRR~k~kk~~ 66 (75)
T 2da5_A 10 KYKERAPEQLRALESSFAQNPLPLDEELDRLRSET-KMTRREIDSWFSERRKKVNAEE 66 (75)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-CCCHHHHHHHHHHHTTHHHHSS
T ss_pred CCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHh-CCCHHHhhHhhHHHHHHHHHhh
Confidence 34568999999999987775532334456789999 6999999988877655555443
No 165
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=34.54 E-value=51 Score=17.08 Aligned_cols=28 Identities=7% Similarity=0.253 Sum_probs=22.2
Q ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Q 034697 38 RWDNVAKAVSGKTVEDVKKHYELLVKDIN 66 (86)
Q Consensus 38 rW~~IA~~vpgRT~~qc~~ry~~L~~dv~ 66 (86)
.-..||..+ |.|..-|+.|...+...+.
T Consensus 15 s~~eIA~~l-~is~~tV~~~~~~~~~kl~ 42 (61)
T 2jpc_A 15 TNHGISEKL-HISIKTVETHRMNMMRKLQ 42 (61)
T ss_dssp CSHHHHHHT-CSCHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHh-CCCHHHHHHHHHHHHHHHC
Confidence 457999999 6899999988877665554
No 166
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=34.48 E-value=56 Score=17.57 Aligned_cols=49 Identities=6% Similarity=0.047 Sum_probs=36.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHH
Q 034697 13 GSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLV 62 (86)
Q Consensus 13 ~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~ 62 (86)
...+|.++...|+......+--....=..||..+ |-|..+|+.=|++-.
T Consensus 7 Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l-~l~~~qV~~WFqNrR 55 (62)
T 2vi6_A 7 RTVFSQAQLCALKDRFQKQKYLSLQQMQELSSIL-NLSYKQVKTWFQNQR 55 (62)
T ss_dssp -CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHH-TCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHh-CCCHHHhhHHhHHhh
Confidence 4578999999999997765432334456899999 699999987666543
No 167
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=34.27 E-value=47 Score=18.76 Aligned_cols=37 Identities=8% Similarity=0.002 Sum_probs=28.0
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHH
Q 034697 22 KQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHY 58 (86)
Q Consensus 22 k~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry 58 (86)
++|...+..++....-.|..||+.-.|-|.-++..-.
T Consensus 8 ~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~ 44 (83)
T 3aji_B 8 LIFSTITSKMNLSEEVDLEDYVARPDKISGADINSIC 44 (83)
T ss_dssp HHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHH
T ss_pred HHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHH
Confidence 4566667777644456799999999999999987643
No 168
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=34.25 E-value=70 Score=18.55 Aligned_cols=54 Identities=20% Similarity=0.171 Sum_probs=39.4
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Q 034697 12 SGSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKDIN 66 (86)
Q Consensus 12 ~~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~dv~ 66 (86)
....+|.++...|+......+--....=..||..+ |-|..+|+.=|++-....+
T Consensus 31 ~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~vWFqNRR~k~k 84 (88)
T 2r5y_A 31 QRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHAL-SLTERQIKIWFQNRRMKWK 84 (88)
T ss_dssp CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHh-CcCHHHhhHHhHHHHHHhH
Confidence 34679999999999997665432334557889999 6999999887776554433
No 169
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=33.50 E-value=14 Score=22.19 Aligned_cols=38 Identities=13% Similarity=0.150 Sum_probs=28.2
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 034697 23 QFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKD 64 (86)
Q Consensus 23 ~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~d 64 (86)
.|.+.+... +--.-+.+|..+ |-+.++|.+|-+.|..+
T Consensus 11 ~Fi~yIk~~---Kvv~LedLA~~F-~l~t~~~i~RI~~Le~~ 48 (72)
T 1wi9_A 11 EFINYIKKS---KVVLLEDLAFQM-GLRTQDAINRIQDLLTE 48 (72)
T ss_dssp HHHHHHHHC---SEECHHHHHHHH-CSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHc---CeeeHHHHHHHh-CCChHHHHHHHHHHHHC
Confidence 455555554 345789999999 57778899999888765
No 170
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} PDB: 2l4m_A
Probab=32.92 E-value=70 Score=19.08 Aligned_cols=42 Identities=19% Similarity=0.220 Sum_probs=28.4
Q ss_pred CHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHH
Q 034697 17 TVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELL 61 (86)
Q Consensus 17 T~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L 61 (86)
|...++.+.+.|...+ +.+=-.||+.+|=||++||--+-..|
T Consensus 8 s~~~ee~I~~fL~~~G---p~~AL~IAK~LGlktAK~VNp~LY~m 49 (72)
T 3eyi_A 8 SQQREEDIYRFLKDNG---PQRALVIAQALGMRTAKDVNRDLYRM 49 (72)
T ss_dssp SSHHHHHHHHHHHHHC---SEEHHHHHHHTTCCSGGGTHHHHHHH
T ss_pred hhhhHHHHHHHHHHcC---CchHHHHHHHhCcchhhhcCHHHHHH
Confidence 4443444555555554 45788999999889999997654333
No 171
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=32.45 E-value=97 Score=19.67 Aligned_cols=46 Identities=7% Similarity=0.091 Sum_probs=31.7
Q ss_pred CHHHHHHHHHHHHhcCCC-CCchHHHHHHHcCCCCHHHHHHHHHHHHH
Q 034697 17 TVKQNKQFETALAFYDKD-TPDRWDNVAKAVSGKTVEDVKKHYELLVK 63 (86)
Q Consensus 17 T~eEdk~Le~al~~~~~~-~~~rW~~IA~~vpgRT~~qc~~ry~~L~~ 63 (86)
|..|-.+|...+.....+ ....-+.||+.+ |.+..+|...-..|.+
T Consensus 31 s~~E~~lLl~L~~~~~~g~~~ps~~~LA~~~-~~s~~~v~~~L~~L~~ 77 (135)
T 2v79_A 31 NETELILLLKIKMHLEKGSYFPTPNQLQEGM-SISVEECTNRLRMFIQ 77 (135)
T ss_dssp CHHHHHHHHHHHHHHTTTCCSCCHHHHHTTS-SSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 445555555555533333 335789999999 6999999998777654
No 172
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=31.72 E-value=69 Score=17.77 Aligned_cols=56 Identities=16% Similarity=0.159 Sum_probs=40.1
Q ss_pred CCCCCCHHHHHHHHHHHHh-cCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHhhh
Q 034697 12 SGSSWTVKQNKQFETALAF-YDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKDINDI 68 (86)
Q Consensus 12 ~~~~WT~eEdk~Le~al~~-~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~dv~~i 68 (86)
....+|.++...|+..... .+--....=..||+.+ |-|..+|+.=|++-....+..
T Consensus 4 ~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l-~l~~~qV~~WFqNRR~k~rk~ 60 (72)
T 1uhs_A 4 GAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEA-GLTEEQTQKWFKQRLAEWRRS 60 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHH-TCCHHHHHHHHHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHH-CcCHHHhhHHhHHHHHHHhhh
Confidence 3467999999999999874 3321334557899999 699999988777655444443
No 173
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=31.46 E-value=47 Score=21.19 Aligned_cols=26 Identities=19% Similarity=0.491 Sum_probs=18.7
Q ss_pred chHHHHHHHcCC-CC----HHHHHHHHHHHH
Q 034697 37 DRWDNVAKAVSG-KT----VEDVKKHYELLV 62 (86)
Q Consensus 37 ~rW~~IA~~vpg-RT----~~qc~~ry~~L~ 62 (86)
+.|..||..|+- .+ ....+.+|.+++
T Consensus 64 k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L 94 (121)
T 2rq5_A 64 KKWNKLADMLRIPKTAQDRLAKLQEAYCQYL 94 (121)
T ss_dssp TCHHHHHHHTCCCTTCSSHHHHHHHHHHTTH
T ss_pred CcHHHHHHHhCCCCCcCcHHHHHHHHHHHHh
Confidence 689999999963 22 456778887643
No 174
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=31.25 E-value=70 Score=19.17 Aligned_cols=37 Identities=8% Similarity=0.074 Sum_probs=27.1
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 034697 23 QFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKD 64 (86)
Q Consensus 23 ~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~d 64 (86)
.+...|...+ -.=..||+.+ |-|...|+.|-..|.++
T Consensus 21 ~IL~lL~~~g----~sa~eLAk~L-giSk~aVr~~L~~Le~e 57 (82)
T 1oyi_A 21 EAIKTIGIEG----ATAAQLTRQL-NMEKREVNKALYDLQRS 57 (82)
T ss_dssp HHHHHHSSST----EEHHHHHHHS-SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC----CCHHHHHHHH-CcCHHHHHHHHHHHHHC
Confidence 3345555432 5789999999 69999999998887543
No 175
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=30.30 E-value=73 Score=17.56 Aligned_cols=54 Identities=19% Similarity=0.161 Sum_probs=40.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Q 034697 13 GSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKDIND 67 (86)
Q Consensus 13 ~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~dv~~ 67 (86)
...+|.++...|+......+--....=..||..+ |-|..+|+.=|++-....+.
T Consensus 6 Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~vWFqNRR~k~kk 59 (68)
T 1ahd_P 6 RQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHAL-SLTERQIKIWFQNRRMKWKK 59 (68)
T ss_dssp TCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHH-TCCHHHHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHH-CcCHhhhhHHhHHHHhHHhH
Confidence 4578999999999987765433345567899999 69999999877765544444
No 176
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=29.93 E-value=89 Score=18.43 Aligned_cols=54 Identities=15% Similarity=0.080 Sum_probs=39.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Q 034697 13 GSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKDIND 67 (86)
Q Consensus 13 ~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~dv~~ 67 (86)
...+|.++...|+......+--....=..||..+ |-|..+|+.=|++-....+.
T Consensus 21 Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l-~L~~~qV~vWFqNRR~k~kr 74 (93)
T 3a01_A 21 RTSFTRIQVAELEKRFHKQKYLASAERAALARGL-KMTDAQVKTWFQNRRTKWRR 74 (93)
T ss_dssp CCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTT-TCCHHHHHHHHHHHHHHHHH
T ss_pred CcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHh-CCChhhcccccHhhhhhhhh
Confidence 4679999999999998775533344557789999 69999998877665444443
No 177
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=29.49 E-value=64 Score=16.70 Aligned_cols=22 Identities=18% Similarity=0.380 Sum_probs=16.7
Q ss_pred cCCCCHHHHHHHHHHHHHHHhh
Q 034697 46 VSGKTVEDVKKHYELLVKDIND 67 (86)
Q Consensus 46 vpgRT~~qc~~ry~~L~~dv~~ 67 (86)
++|||.+|-+.-++.+.+.+..
T Consensus 8 ~~grs~eqk~~l~~~i~~~l~~ 29 (61)
T 2opa_A 8 LEGRTDEQKRNLVEKVTEAVKE 29 (61)
T ss_dssp ESCCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHH
Confidence 5789999888878777666554
No 178
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=29.48 E-value=1.1e+02 Score=19.49 Aligned_cols=52 Identities=13% Similarity=0.079 Sum_probs=39.8
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 034697 12 SGSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKD 64 (86)
Q Consensus 12 ~~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~d 64 (86)
....+|.++-..|+......+--....=..||..+ |-|..+|+.=|++-...
T Consensus 96 ~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l-~L~~~qV~vWFqNrR~k 147 (151)
T 3d1n_I 96 RRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKEL-NYDREVVRVWFSNRRQT 147 (151)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred CCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-CCCHHHhHHHHHHHHhc
Confidence 34669999999999998776543445667899999 69999998877665443
No 179
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=28.69 E-value=1.3e+02 Score=21.28 Aligned_cols=50 Identities=8% Similarity=0.056 Sum_probs=36.5
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcC--------------------CCCHHHHHHHHHHH
Q 034697 12 SGSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVS--------------------GKTVEDVKKHYELL 61 (86)
Q Consensus 12 ~~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vp--------------------gRT~~qc~~ry~~L 61 (86)
....||.++...|+.+....+--.....+.||..++ .-|..+|..=|++-
T Consensus 145 ~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNR 214 (221)
T 2h8r_A 145 NRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANR 214 (221)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHH
T ss_pred CCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHh
Confidence 345799999999999977654334568889999874 25777777766553
No 180
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=28.59 E-value=95 Score=18.33 Aligned_cols=52 Identities=17% Similarity=0.153 Sum_probs=37.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 034697 13 GSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKDI 65 (86)
Q Consensus 13 ~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~dv 65 (86)
...+|.++...|+......+--....=..||..+ |-+..||+.=|++-....
T Consensus 29 Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l-~L~~~qV~vWFqNRR~k~ 80 (96)
T 3nar_A 29 ICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKES-GLARTDIVSWFGDTRYAW 80 (96)
T ss_dssp SSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-CCCHHHHHHHHHHHHHHH
T ss_pred CccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHh-CCCHHHeeecchhhhhHh
Confidence 4579999999999987764422334446789999 699999988776654443
No 181
>1otg_A 5-carboxymethyl-2-hydroxymuconate isomerase; 2.10A {Escherichia coli} SCOP: d.80.1.2
Probab=27.35 E-value=48 Score=20.74 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=18.4
Q ss_pred HcCCCCHHHHHHHHHHHHHHHhhh
Q 034697 45 AVSGKTVEDVKKHYELLVKDINDI 68 (86)
Q Consensus 45 ~vpgRT~~qc~~ry~~L~~dv~~i 68 (86)
.++|||.+|-+.-.+.+.+.+...
T Consensus 67 i~~GRs~eqK~~L~~~v~~~l~~~ 90 (125)
T 1otg_A 67 IGAGRSLESRQQAGEMLFELIKTH 90 (125)
T ss_dssp ECTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999888777777766653
No 182
>2doe_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=27.26 E-value=1e+02 Score=18.18 Aligned_cols=48 Identities=17% Similarity=0.271 Sum_probs=35.6
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHcCC-------CCHHHHHHHHHHHHHHHhhhh
Q 034697 22 KQFETALAFYDKDTPDRWDNVAKAVSG-------KTVEDVKKHYELLVKDINDIE 69 (86)
Q Consensus 22 k~Le~al~~~~~~~~~rW~~IA~~vpg-------RT~~qc~~ry~~L~~dv~~ie 69 (86)
..|..+|...+.....+|..|-..|.+ .+..+.+.-|..++..++..+
T Consensus 21 ~~F~~mL~e~~I~~~s~W~~~~~~i~~Dpry~av~~~~eRe~lF~eYi~~l~~~e 75 (83)
T 2doe_A 21 SDFFELLSNHHLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLFKQYIEKIAKNL 75 (83)
T ss_dssp HHHHHHHHHTTCCTTCCHHHHHHHHTTSTHHHHCCCHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHhhCCCCCCCcHHHHHHHHccCHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 368888888876667899999999865 345666667788887776543
No 183
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=27.18 E-value=93 Score=17.77 Aligned_cols=52 Identities=17% Similarity=0.124 Sum_probs=38.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 034697 13 GSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKDI 65 (86)
Q Consensus 13 ~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~dv 65 (86)
...+|.++...|+......+--....=..||..+ |-|..+|+.=|++-....
T Consensus 24 Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l-~l~~~qV~vWFqNRR~k~ 75 (81)
T 1b8i_A 24 RQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHAL-SLTERQIKIWFQNRRMKL 75 (81)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred CcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHh-CCCHHHHHHHhHHhhhhh
Confidence 5679999999999997765432334557789999 699999988776654443
No 184
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=26.40 E-value=87 Score=17.18 Aligned_cols=55 Identities=11% Similarity=0.047 Sum_probs=40.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHhhh
Q 034697 13 GSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKDINDI 68 (86)
Q Consensus 13 ~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~dv~~i 68 (86)
...+|.++...|+......+-.....=..||..+ |-|..+|+.=|.+-....+..
T Consensus 6 Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l-~l~~~qV~~WFqNRR~k~kr~ 60 (68)
T 1ftt_A 6 RVLFSQAQVYELERRFKQQKYLSAPEREHLASMI-HLTPTQVKIWFQNHRYKMKRQ 60 (68)
T ss_dssp CSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHH-TSCHHHHHHHHHHHHHHHHHT
T ss_pred CCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHh-CCCHHHhHHHhHHHhhhhhhh
Confidence 4578999999999987765432344557899999 699999998777655544443
No 185
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=26.38 E-value=88 Score=17.23 Aligned_cols=54 Identities=11% Similarity=0.038 Sum_probs=39.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Q 034697 13 GSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKDIND 67 (86)
Q Consensus 13 ~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~dv~~ 67 (86)
...+|.++...|+......+--....=..||..+ |-|..+|+.=|++-....+.
T Consensus 13 Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqNrR~k~kk 66 (75)
T 2m0c_A 13 RTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRT-DLTEARVQVWFQNRRAKWRK 66 (75)
T ss_dssp SCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-TCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHh-CCCHHHHHHHhHHHHHHHHH
Confidence 4569999999999987664422233446789999 69999999888776655544
No 186
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=26.12 E-value=91 Score=17.34 Aligned_cols=58 Identities=19% Similarity=0.137 Sum_probs=41.1
Q ss_pred CCCCCCCHHHHHHHHHHHHh-cCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHhhhh
Q 034697 11 SSGSSWTVKQNKQFETALAF-YDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKDINDIE 69 (86)
Q Consensus 11 ~~~~~WT~eEdk~Le~al~~-~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~dv~~ie 69 (86)
.....+|.++...|+..... .+--....=..||..+ |-|..+|+.=|++-....+..+
T Consensus 4 k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~-~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 4 QTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEA-GLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp SCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHH-TSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-CcCHHHHHHHHHHHHHHHHHhc
Confidence 34567999999999999874 3321334457899999 6999999987776554444433
No 187
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=25.91 E-value=77 Score=16.39 Aligned_cols=23 Identities=13% Similarity=0.260 Sum_probs=17.0
Q ss_pred HcCCCCHHHHHHHHHHHHHHHhh
Q 034697 45 AVSGKTVEDVKKHYELLVKDIND 67 (86)
Q Consensus 45 ~vpgRT~~qc~~ry~~L~~dv~~ 67 (86)
.++|||.+|-+.-++.+.+.+..
T Consensus 7 ~~~grs~e~k~~l~~~i~~~l~~ 29 (62)
T 1otf_A 7 IIEGRTDEQKETLIRQVSEAMAN 29 (62)
T ss_dssp EESCCCHHHHHHHHHHHHHHHHH
T ss_pred EcCCCCHHHHHHHHHHHHHHHHH
Confidence 35789999888878777666554
No 188
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=25.71 E-value=1.2e+02 Score=18.43 Aligned_cols=29 Identities=7% Similarity=0.007 Sum_probs=21.7
Q ss_pred chHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Q 034697 37 DRWDNVAKAVSGKTVEDVKKHYELLVKDIN 66 (86)
Q Consensus 37 ~rW~~IA~~vpgRT~~qc~~ry~~L~~dv~ 66 (86)
-....||+.+ |.|..-|+.|.......++
T Consensus 42 ~s~~EIA~~l-giS~~tV~~~l~ra~~kLr 70 (113)
T 1xsv_A 42 YSLSEIADTF-NVSRQAVYDNIRRTGDLVE 70 (113)
T ss_dssp CCHHHHHHHT-TCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHH-CcCHHHHHHHHHHHHHHHH
Confidence 4688999999 6888888887666554444
No 189
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=25.64 E-value=92 Score=17.23 Aligned_cols=55 Identities=11% Similarity=0.109 Sum_probs=39.5
Q ss_pred CCCCCCHHHHHHHHHHH---HhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Q 034697 12 SGSSWTVKQNKQFETAL---AFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKDIND 67 (86)
Q Consensus 12 ~~~~WT~eEdk~Le~al---~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~dv~~ 67 (86)
....+|.++-..|+..+ ...+--....=..||..+ |-|..||..=|++-....+.
T Consensus 4 ~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~-~L~~~qV~~WFqNrR~r~kk 61 (73)
T 1puf_B 4 KRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKC-GITVSQVSNWFGNKRIRYKK 61 (73)
T ss_dssp CCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHH-TSCHHHHHHHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHH-CcCHHHHHHHHHHHHhhccc
Confidence 34678999999999998 333322345567899999 69999999888765544443
No 190
>1oef_A Apolipoprotein E; glycoprotein, plasma, lipid transport, HDL, VLDL, chylomicron, sialic acid, heparin-binding; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=25.52 E-value=61 Score=15.08 Aligned_cols=17 Identities=29% Similarity=0.608 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHhh
Q 034697 51 VEDVKKHYELLVKDIND 67 (86)
Q Consensus 51 ~~qc~~ry~~L~~dv~~ 67 (86)
+++++.++..+.+.|+.
T Consensus 7 ~e~ik~q~~~i~e~i~~ 23 (26)
T 1oef_A 7 VEDMQRQWAGLVEKVQA 23 (26)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 57888888888877763
No 191
>1oeg_A Apolipoprotein E; sialic acid, heparin-binding, repeat, signal, disease mutation, polymorphism; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=24.66 E-value=35 Score=16.56 Aligned_cols=17 Identities=29% Similarity=0.608 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHhh
Q 034697 51 VEDVKKHYELLVKDIND 67 (86)
Q Consensus 51 ~~qc~~ry~~L~~dv~~ 67 (86)
++++++.|..|.+.|+.
T Consensus 3 ~e~mr~Q~~~lveKvq~ 19 (26)
T 1oeg_A 3 VEDMQRQWAGLVEKVQA 19 (26)
T ss_dssp HHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46778888888888875
No 192
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.59 E-value=1.2e+02 Score=17.97 Aligned_cols=45 Identities=20% Similarity=0.133 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 034697 19 KQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKD 64 (86)
Q Consensus 19 eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~d 64 (86)
++-.+|+.+...-+.-+...-.+||..+ |-+.+.|+.=|.+.+..
T Consensus 15 ~ql~~Lk~yF~~n~~Ps~eei~~LA~~l-gL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 15 DHMSVLKAYYAMNMEPNSDELLKISIAV-GLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHh-CCCHHHHHHHHhhcccc
Confidence 4466777777777766678899999999 68888888877776653
No 193
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=24.48 E-value=48 Score=19.39 Aligned_cols=35 Identities=11% Similarity=0.063 Sum_probs=26.1
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHH
Q 034697 23 QFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKH 57 (86)
Q Consensus 23 ~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~r 57 (86)
+|...+.+++....-.|+.||+.-.|-|.-++..-
T Consensus 19 IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l 53 (86)
T 2krk_A 19 ILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGV 53 (86)
T ss_dssp HHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHH
T ss_pred HHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHH
Confidence 55555666654445679999999999999997764
No 194
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=24.29 E-value=1e+02 Score=19.17 Aligned_cols=31 Identities=10% Similarity=0.039 Sum_probs=25.6
Q ss_pred CchHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Q 034697 36 PDRWDNVAKAVSGKTVEDVKKHYELLVKDIND 67 (86)
Q Consensus 36 ~~rW~~IA~~vpgRT~~qc~~ry~~L~~dv~~ 67 (86)
+-.-..||+.+ |.|...|+.|.......++.
T Consensus 109 g~s~~EIA~~l-gis~~tV~~~l~rar~~Lr~ 139 (157)
T 2lfw_A 109 GFSPEDAAYLI-EVDTSEVETLVTEALAEIEK 139 (157)
T ss_dssp CCCHHHHHHTT-TSCHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHH-CcCHHHHHHHHHHHHHHHHH
Confidence 34689999999 69999999998877777764
No 195
>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} SCOP: d.80.1.3
Probab=24.28 E-value=84 Score=18.59 Aligned_cols=22 Identities=18% Similarity=0.330 Sum_probs=16.3
Q ss_pred HcCCCCHHHHHHHHHHHHHHHh
Q 034697 45 AVSGKTVEDVKKHYELLVKDIN 66 (86)
Q Consensus 45 ~vpgRT~~qc~~ry~~L~~dv~ 66 (86)
.++|||.+|-++.++.+.+.+.
T Consensus 63 ~~~g~~~eqk~~l~~~i~~~l~ 84 (113)
T 1hfo_A 63 SIGGIEPSRNRDHSAKLFDHLN 84 (113)
T ss_dssp ESSSCSHHHHHHHHHHHHHHHH
T ss_pred EecCCCHHHHHHHHHHHHHHHH
Confidence 3578998888887777666554
No 196
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=24.27 E-value=93 Score=16.78 Aligned_cols=33 Identities=15% Similarity=0.196 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHH
Q 034697 19 KQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKK 56 (86)
Q Consensus 19 eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ 56 (86)
-|...+..+|..+. .+..+.|+.+| -+......
T Consensus 19 ~E~~~i~~aL~~~~----gn~~~aA~~LG-isr~tL~r 51 (63)
T 3e7l_A 19 FEKIFIEEKLREYD----YDLKRTAEEIG-IDLSNLYR 51 (63)
T ss_dssp HHHHHHHHHHHHTT----TCHHHHHHHHT-CCHHHHHH
T ss_pred HHHHHHHHHHHHhC----CCHHHHHHHHC-cCHHHHHH
Confidence 36668888888874 46899999994 55554443
No 197
>1txl_A Metal-binding protein YODA; E.coli, structural genomics, NEW fold, PSI, protein structure initiative; 1.70A {Escherichia coli} SCOP: b.60.1.4 PDB: 1s7d_A 1oej_A 1oee_A 1oek_A
Probab=23.91 E-value=90 Score=22.17 Aligned_cols=33 Identities=27% Similarity=0.321 Sum_probs=25.5
Q ss_pred CchHHHHHHHcCCCCHHHHHHHHHH-HHHHHhhh
Q 034697 36 PDRWDNVAKAVSGKTVEDVKKHYEL-LVKDINDI 68 (86)
Q Consensus 36 ~~rW~~IA~~vpgRT~~qc~~ry~~-L~~dv~~i 68 (86)
..-|+..|+..+.+|++|.+..|.. +..||..|
T Consensus 74 d~v~~~kAk~~~~~TaeeyKayy~~gYkTDv~~I 107 (215)
T 1txl_A 74 DPVFQKKADADKTKTFAEIKDYYHKGYATDIEMI 107 (215)
T ss_dssp HHHHHHHHHHCTTSCHHHHHHHHHHHHCCSEEEE
T ss_pred HHHHHHHHhhcCCCCHHHHHHHHHhccCCCcceE
Confidence 3568889998888999999999976 44555544
No 198
>1uiz_A MIF, macrophage migration inhibitory factor; cytokine, tautomerase; 2.50A {Xenopus laevis} SCOP: d.80.1.3
Probab=23.85 E-value=89 Score=18.60 Aligned_cols=23 Identities=13% Similarity=0.062 Sum_probs=16.9
Q ss_pred HcCCCCHHHHHHHHHHHHHHHhh
Q 034697 45 AVSGKTVEDVKKHYELLVKDIND 67 (86)
Q Consensus 45 ~vpgRT~~qc~~ry~~L~~dv~~ 67 (86)
.++|||.+|-+..++.+.+.+..
T Consensus 64 ~~~g~~~eqk~~l~~~i~~~l~~ 86 (115)
T 1uiz_A 64 SIGKIGGPQNKSYTKLLCDILTK 86 (115)
T ss_dssp ESSCCSHHHHHHHHHHHHHHHHH
T ss_pred EecCCCHHHHHHHHHHHHHHHHH
Confidence 36789998888878776665543
No 199
>3ezq_B Protein FADD; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} PDB: 1e3y_A 1e41_A 3oq9_H
Probab=23.71 E-value=1.2e+02 Score=19.15 Aligned_cols=30 Identities=10% Similarity=0.259 Sum_probs=18.1
Q ss_pred HHHHHHhcCCCCCchHHHHHHHcCCCCHHHH
Q 034697 24 FETALAFYDKDTPDRWDNVAKAVSGKTVEDV 54 (86)
Q Consensus 24 Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc 54 (86)
|...+..+-...+..|..+|..+ |-|..++
T Consensus 5 L~~~f~~Ia~~lG~~Wk~LAR~L-Glse~dI 34 (122)
T 3ezq_B 5 LCAAFNVICDNVGKDWRRLARQL-KVSDTKI 34 (122)
T ss_dssp HHHHHHHHHTTCCTTHHHHHHHT-TCCHHHH
T ss_pred HHHHHHHHHHhhhhhHHHHHHHh-CCCHHHH
Confidence 34444433333457899999999 4565443
No 200
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=23.69 E-value=1.3e+02 Score=18.31 Aligned_cols=47 Identities=19% Similarity=0.058 Sum_probs=30.0
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Q 034697 15 SWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKDIND 67 (86)
Q Consensus 15 ~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~dv~~ 67 (86)
..++.+-..|.-.... +..-..||..+ |.|..-|+.+.......++.
T Consensus 22 ~L~~~~r~vl~l~y~~-----g~s~~EIA~~l-giS~~tV~~~l~ra~~kLr~ 68 (113)
T 1s7o_A 22 LLTDKQMNYIELYYAD-----DYSLAEIADEF-GVSRQAVYDNIKRTEKILET 68 (113)
T ss_dssp GSCHHHHHHHHHHHHT-----CCCHHHHHHHH-TCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHc-----CCCHHHHHHHH-CcCHHHHHHHHHHHHHHHHH
Confidence 3556666555543221 23588999999 68888888877665555443
No 201
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=23.67 E-value=17 Score=23.65 Aligned_cols=42 Identities=12% Similarity=0.182 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCC----------CCchHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 034697 22 KQFETALAFYDKD----------TPDRWDNVAKAVSGKTVEDVKKHYELLVKD 64 (86)
Q Consensus 22 k~Le~al~~~~~~----------~~~rW~~IA~~vpgRT~~qc~~ry~~L~~d 64 (86)
..|..+|.+.|.. .+-....||+.+ |.|...|+.+....+..
T Consensus 190 ~~l~~~l~~L~~~~r~vl~l~~~~g~s~~EIA~~l-gis~~tV~~~~~ra~~~ 241 (243)
T 1l0o_C 190 IALKKAIEELDERERLIVYLRYYKDQTQSEVASRL-GISQVQMSRLEKKILQH 241 (243)
T ss_dssp -----------------------------------------------------
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 3556666655422 234567777777 46777776665544433
No 202
>3e6q_A Putative 5-carboxymethyl-2-hydroxymuconate isomer; structural genomics, APC7683, isomerase, PSI-2, protein STRU initiative; HET: GOL IMD; 1.75A {Pseudomonas aeruginosa}
Probab=23.41 E-value=77 Score=20.70 Aligned_cols=24 Identities=13% Similarity=0.137 Sum_probs=19.3
Q ss_pred HcCCCCHHHHHHHHHHHHHHHhhh
Q 034697 45 AVSGKTVEDVKKHYELLVKDINDI 68 (86)
Q Consensus 45 ~vpgRT~~qc~~ry~~L~~dv~~i 68 (86)
.++|||.+|-+.-.+.+.+.+...
T Consensus 89 ll~GRt~EqK~~L~e~v~~al~~~ 112 (146)
T 3e6q_A 89 ILDGRDAATRQALGESLCEVLAGA 112 (146)
T ss_dssp EETTCCHHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHH
Confidence 568999999998888887777653
No 203
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=22.19 E-value=1.1e+02 Score=16.88 Aligned_cols=51 Identities=16% Similarity=0.131 Sum_probs=38.9
Q ss_pred CCCCCCHHHHHHHHHHHHh-----cCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 034697 12 SGSSWTVKQNKQFETALAF-----YDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKDI 65 (86)
Q Consensus 12 ~~~~WT~eEdk~Le~al~~-----~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~dv 65 (86)
....+|.++-..|+..+.. || ....=..||..+ |-|..||..=|++-....
T Consensus 10 ~R~~~~~~q~~~Le~~f~~~~~~~yp--~~~~r~~La~~~-~L~~~qV~~WFqNrR~r~ 65 (73)
T 1x2n_A 10 KRGVLPKHATNVMRSWLFQHIGHPYP--TEDEKKQIAAQT-NLTLLQVNNWFINARRRI 65 (73)
T ss_dssp SSCCCCHHHHHHHHHHHHHTTTSCCC--CHHHHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHhCCCCCC--CHHHHHHHHHHH-CcCHHHHHHHhHHHHhhc
Confidence 4567999999999999855 44 345567899999 699999998777654443
No 204
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=21.70 E-value=1.3e+02 Score=17.38 Aligned_cols=24 Identities=17% Similarity=0.339 Sum_probs=20.6
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHc
Q 034697 23 QFETALAFYDKDTPDRWDNVAKAV 46 (86)
Q Consensus 23 ~Le~al~~~~~~~~~rW~~IA~~v 46 (86)
.|..+|..+..+..-.|+++...+
T Consensus 20 ~F~~LL~e~~V~~~~tWe~~~~~i 43 (71)
T 1uzc_A 20 AFKELLKEKRVPSNASWEQAMKMI 43 (71)
T ss_dssp HHHHHHHHTTCCTTCCHHHHHHHH
T ss_pred HHHHHHHHcCcCCCCCHHHHHHHH
Confidence 899999999877778999998866
No 205
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=21.64 E-value=1.3e+02 Score=17.33 Aligned_cols=50 Identities=14% Similarity=0.075 Sum_probs=37.8
Q ss_pred CCCCCCHHHHHHHHHHHHh---cCCCCCchHHHHHHHcCCCCHHHHHHHHHHHH
Q 034697 12 SGSSWTVKQNKQFETALAF---YDKDTPDRWDNVAKAVSGKTVEDVKKHYELLV 62 (86)
Q Consensus 12 ~~~~WT~eEdk~Le~al~~---~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~ 62 (86)
....+|.++-..|+..+.. .+--....=..||..+ |-|..||+.=|++-.
T Consensus 30 ~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~-gL~~~qV~~WFqNrR 82 (87)
T 1mnm_C 30 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNT-SLSRIQIKNWVSNRR 82 (87)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHH-CCCHHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHH-CcCHHHHHHHHHHHH
Confidence 3567999999999999888 4432334456789999 699999988776543
No 206
>2oy9_A UPF0223 protein BH2638; PFAM, structural genomics, PSI-2, protein structure initiative; 1.60A {Bacillus halodurans c-125} SCOP: a.276.1.1
Probab=21.28 E-value=1.6e+02 Score=18.44 Aligned_cols=38 Identities=16% Similarity=0.342 Sum_probs=22.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHH
Q 034697 13 GSSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVS-GKTVEDVKKHYELL 61 (86)
Q Consensus 13 ~~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vp-gRT~~qc~~ry~~L 61 (86)
...||.+|-...... |..|.++-. |-..++...+|+..
T Consensus 10 d~dWSteEii~Vi~F-----------~~~VE~AYE~GV~r~~ll~~Y~~F 48 (98)
T 2oy9_A 10 SLDWSTEEVIDVVHF-----------FQAIEQAYDQGIAREDLLGKYRRF 48 (98)
T ss_dssp CCCCCHHHHHHHHHH-----------HHHHHHHHTTCEEHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH-----------HHHHHHHHHccCcHHHHHHHHHHH
Confidence 346999998754332 444444442 56666666666654
No 207
>2os5_A Acemif; macrophage migration inhibitory factor, cytokine, nematode,; 1.60A {Ancylostoma ceylanicum} PDB: 3rf4_A* 3rf5_A*
Probab=21.21 E-value=1.1e+02 Score=18.39 Aligned_cols=23 Identities=13% Similarity=0.265 Sum_probs=16.9
Q ss_pred HcCCCCHHHHHHHHHHHHHHHhh
Q 034697 45 AVSGKTVEDVKKHYELLVKDIND 67 (86)
Q Consensus 45 ~vpgRT~~qc~~ry~~L~~dv~~ 67 (86)
.++|||.+|-++.++.+.+.+..
T Consensus 64 ~~~g~~~eqk~~l~~~i~~~l~~ 86 (119)
T 2os5_A 64 SIGALSADDNIRHTQKITQFCQD 86 (119)
T ss_dssp ESSCCCHHHHHHHHHHHHHHHHH
T ss_pred EecCCCHHHHHHHHHHHHHHHHH
Confidence 46789998888878776665543
No 208
>3gva_A Alkyltransferase-like protein 1; alkylated DNA damage repair, DNA damage, DNA repair, DNA- binding, DNA binding protein; 2.00A {Schizosaccharomyces pombe} PDB: 3gx4_X* 3gyh_X* 4enj_A* 4enk_A* 4enm_A* 4enn_A* 4hdu_A* 4hdv_A*
Probab=20.89 E-value=1.7e+02 Score=18.51 Aligned_cols=35 Identities=11% Similarity=0.068 Sum_probs=26.5
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHcCC-CCHHHHH
Q 034697 21 NKQFETALAFYDKDTPDRWDNVAKAVSG-KTVEDVK 55 (86)
Q Consensus 21 dk~Le~al~~~~~~~~~rW~~IA~~vpg-RT~~qc~ 55 (86)
++..-++|.+.|.|.--....||+.++. +.+..|-
T Consensus 7 q~~Vw~~l~~IP~G~v~TYg~IA~~~G~p~aaRaVG 42 (116)
T 3gva_A 7 YTKVYDAVCEIPYGKVSTYGEIARYVGMPSYARQVG 42 (116)
T ss_dssp HHHHHHHHTTSCTTCBBCHHHHHHHTTCTTCHHHHH
T ss_pred HHHHHHHHhcCCCCCeEeHHHHHHHhCCCCcHHHHH
Confidence 3445567889999888899999999974 5665554
No 209
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=20.82 E-value=1.9e+02 Score=19.13 Aligned_cols=46 Identities=9% Similarity=-0.005 Sum_probs=33.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Q 034697 14 SSWTVKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYELLVKDIN 66 (86)
Q Consensus 14 ~~WT~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L~~dv~ 66 (86)
..-|+.|.+.|.-. .. +..-..||..+ |.|..-|+.|...+...+.
T Consensus 174 ~~Lt~~e~~vl~~~-~~-----g~s~~eIa~~l-~is~~tV~~~~~~~~~kl~ 219 (236)
T 2q0o_A 174 QMLSPREMLCLVWA-SK-----GKTASVTANLT-GINARTVQHYLDKARAKLD 219 (236)
T ss_dssp GSCCHHHHHHHHHH-HT-----TCCHHHHHHHH-CCCHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHH-Hc-----CCCHHHHHHHH-CcCHHHHHHHHHHHHHHhC
Confidence 45788888877553 22 23578999999 6999999988877666543
No 210
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=20.80 E-value=1.3e+02 Score=17.35 Aligned_cols=35 Identities=14% Similarity=0.191 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHHHHH
Q 034697 20 QNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKKHYE 59 (86)
Q Consensus 20 Edk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ry~ 59 (86)
|...|+.+|..+. .+..+.|+.+ |-+......+-+
T Consensus 52 E~~~i~~aL~~~~----gn~~~aA~~L-GIsr~tL~rklk 86 (91)
T 1ntc_A 52 ERTLLTTALRHTQ----GHKQEAARLL-GWGAATLTAKLK 86 (91)
T ss_dssp HHHHHHHHHHHTT----TCTTHHHHHT-TCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhC----CCHHHHHHHH-CcCHHHHHHHHH
Confidence 5567777888864 3467889988 566655544433
No 211
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=20.54 E-value=1.4e+02 Score=17.48 Aligned_cols=34 Identities=6% Similarity=0.123 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCHHHHHH
Q 034697 18 VKQNKQFETALAFYDKDTPDRWDNVAKAVSGKTVEDVKK 56 (86)
Q Consensus 18 ~eEdk~Le~al~~~~~~~~~rW~~IA~~vpgRT~~qc~~ 56 (86)
.-|...|+++|.++. .+..+.|+.+ |-+......
T Consensus 40 ~~Er~~I~~aL~~~~----GN~s~AA~~L-GISR~TLyr 73 (81)
T 1umq_A 40 RVRWEHIQRIYEMCD----RNVSETARRL-NMHRRTLQR 73 (81)
T ss_dssp HHHHHHHHHHHHHTT----SCHHHHHHHH-TSCHHHHHH
T ss_pred HHHHHHHHHHHHHhC----CCHHHHHHHh-CCCHHHHHH
Confidence 445667888999974 3588999999 566555443
No 212
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=20.45 E-value=1.4e+02 Score=17.67 Aligned_cols=32 Identities=16% Similarity=0.217 Sum_probs=24.7
Q ss_pred CCCHHH-HHHHHHHHHhcCCCCCchHHHHHHHc
Q 034697 15 SWTVKQ-NKQFETALAFYDKDTPDRWDNVAKAV 46 (86)
Q Consensus 15 ~WT~eE-dk~Le~al~~~~~~~~~rW~~IA~~v 46 (86)
.=|.|| ...|.++|..+.....-.|+++-..+
T Consensus 13 ~~t~eea~~~Fk~LL~e~~V~p~~tWe~~~~~i 45 (82)
T 2dod_A 13 IVPLEARMKQFKDMLLERGVSAFSTWEKELHKI 45 (82)
T ss_dssp SCCHHHHHHHHHHHHHHTTCCSSSCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHcCcCCCCCHHHHHHHH
Confidence 345666 55899999999877778899987655
No 213
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=20.42 E-value=1.4e+02 Score=19.38 Aligned_cols=29 Identities=24% Similarity=0.312 Sum_probs=24.1
Q ss_pred chHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Q 034697 37 DRWDNVAKAVSGKTVEDVKKHYELLVKDIN 66 (86)
Q Consensus 37 ~rW~~IA~~vpgRT~~qc~~ry~~L~~dv~ 66 (86)
.....|+... |-|...++++|+.|.+.+.
T Consensus 166 ~t~~ei~~~~-~vs~~ti~~~~~~l~~~l~ 194 (200)
T 1ais_B 166 RTQREVAEVA-RVTEVTVRNRYKELVEKLK 194 (200)
T ss_dssp CCHHHHHHHH-TCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHh-CCCHHHHHHHHHHHHHHcC
Confidence 3467888888 5899999999999988764
No 214
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=20.32 E-value=1.4e+02 Score=17.19 Aligned_cols=48 Identities=8% Similarity=0.086 Sum_probs=36.0
Q ss_pred CCCCCHHHHHHHHHHHHh----cCCCCCchHHHHHHHcCCCCHHHHHHHHHHH
Q 034697 13 GSSWTVKQNKQFETALAF----YDKDTPDRWDNVAKAVSGKTVEDVKKHYELL 61 (86)
Q Consensus 13 ~~~WT~eEdk~Le~al~~----~~~~~~~rW~~IA~~vpgRT~~qc~~ry~~L 61 (86)
...+|.++-..|+..... .+--....=+.||..+ |-+..+|+-=|++-
T Consensus 21 Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~l-gL~~~~VkvWFqNr 72 (80)
T 1wh5_A 21 RTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQET-GVPRQVLKVWLHNN 72 (80)
T ss_dssp SCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHS-CCCHHHHHHHHHHH
T ss_pred CccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHh-CCCcccccCCcccc
Confidence 456999999999998776 2222345667899999 69999998766653
No 215
>3s1b_A Mini-Z; VEGF, cystine knot, signaling protein; 2.90A {Homo sapiens}
Probab=20.32 E-value=98 Score=15.56 Aligned_cols=9 Identities=11% Similarity=0.243 Sum_probs=6.7
Q ss_pred HHHHHHHHH
Q 034697 52 EDVKKHYEL 60 (86)
Q Consensus 52 ~qc~~ry~~ 60 (86)
++|.-||++
T Consensus 3 kecllryke 11 (34)
T 3s1b_A 3 KECLLRYKE 11 (34)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 578888875
Done!