BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034704
         (86 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3CI9|A Chain A, Crystal Structure Of The Human Hsbp1
 pdb|3CI9|B Chain B, Crystal Structure Of The Human Hsbp1
          Length = 48

 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/48 (58%), Positives = 38/48 (79%), Gaps = 1/48 (2%)

Query: 9  PKQNTADMTAFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSI 56
          PK    D+T+ VQ LLQQMQ +FQT+S+ II +ID+M SRID+LE++I
Sbjct: 1  PK-TVQDLTSVVQTLLQQMQDKFQTISDQIIGRIDDMSSRIDDLEKNI 47


>pdb|3OBE|A Chain A, Crystal Structure Of A Sugar Phosphate IsomeraseEPIMERASE
           (BDI_3400) From Parabacteroides Distasonis Atcc 8503 At
           1.70 A Resolution
 pdb|3OBE|B Chain B, Crystal Structure Of A Sugar Phosphate IsomeraseEPIMERASE
           (BDI_3400) From Parabacteroides Distasonis Atcc 8503 At
           1.70 A Resolution
          Length = 305

 Score = 26.9 bits (58), Expect = 2.7,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 22/46 (47%)

Query: 34  MSESIIAKIDEMGSRIDELEQSINDLRSEMGIEGSASPSLPSKSND 79
           ++ S+     E   + DE  +   D+ +E+G+     PSLP   N+
Sbjct: 97  LTPSLREYTKENXPKFDEFWKKATDIHAELGVSCXVQPSLPRIENE 142


>pdb|2L7B|A Chain A, Nmr Structure Of Full Length Apoe3
          Length = 307

 Score = 26.6 bits (57), Expect = 3.4,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 29/43 (67%), Gaps = 4/43 (9%)

Query: 25  QQMQSRFQTMSESIIAKIDEMGS----RIDELEQSINDLRSEM 63
           Q +Q R Q   E + A+++EMGS    R+DE+++ + ++R+++
Sbjct: 209 QPLQERAQAWGERLRARMEEMGSRTRDRLDEVKEQVAEVRAKL 251


>pdb|2FLQ|A Chain A, Crystal Structure Of Nitric Oxide Synthase From
          Geobacillus Stearothermophilus (Atcc 12980) Complexed
          With L-Arginine
 pdb|2FLQ|B Chain B, Crystal Structure Of Nitric Oxide Synthase From
          Geobacillus Stearothermophilus (Atcc 12980) Complexed
          With L-Arginine
          Length = 375

 Score = 26.6 bits (57), Expect = 3.6,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 16 MTAFVQNLLQQMQSRFQTMSES-IIAKIDEMGSRIDELEQSINDLRSEMGIEGS 68
          M     + L+Q   +  T +E  IIA   E+G    E+++ +N++R E+   G+
Sbjct: 1  MVTIESDKLRQHDEQLMTKAEQFIIASYRELGKSEQEIKRRVNEIRWEVEQTGT 54


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.304    0.121    0.316 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,269,732
Number of Sequences: 62578
Number of extensions: 64890
Number of successful extensions: 143
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 134
Number of HSP's gapped (non-prelim): 17
length of query: 86
length of database: 14,973,337
effective HSP length: 54
effective length of query: 32
effective length of database: 11,594,125
effective search space: 371012000
effective search space used: 371012000
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 45 (21.9 bits)