BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034704
(86 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3ZC22|HSBP1_BOVIN Heat shock factor-binding protein 1 OS=Bos taurus GN=HSBP1 PE=3
SV=1
Length = 76
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 46/59 (77%), Gaps = 1/59 (1%)
Query: 8 DPKQNTADMTAFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEMGIE 66
DPK D+T+ VQ LLQQMQ +FQTMS+ II +ID+M SRID+LE++I DL ++ G+E
Sbjct: 5 DPK-TVQDLTSVVQTLLQQMQDKFQTMSDQIIGRIDDMSSRIDDLEKNIADLMTQAGVE 62
>sp|O75506|HSBP1_HUMAN Heat shock factor-binding protein 1 OS=Homo sapiens GN=HSBP1 PE=1
SV=1
Length = 76
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 46/59 (77%), Gaps = 1/59 (1%)
Query: 8 DPKQNTADMTAFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEMGIE 66
DPK D+T+ VQ LLQQMQ +FQTMS+ II +ID+M SRID+LE++I DL ++ G+E
Sbjct: 5 DPK-TVQDLTSVVQTLLQQMQDKFQTMSDQIIGRIDDMSSRIDDLEKNIADLMTQAGVE 62
>sp|Q5RDI2|HSBP1_PONAB Heat shock factor-binding protein 1 OS=Pongo abelii GN=HSBP1 PE=3
SV=1
Length = 76
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 46/59 (77%), Gaps = 1/59 (1%)
Query: 8 DPKQNTADMTAFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEMGIE 66
DPK D+T+ VQ LLQQMQ +FQTMS+ II +ID+M SRID+LE++I DL ++ G+E
Sbjct: 5 DPK-TVQDLTSVVQTLLQQMQDKFQTMSDQIIGRIDDMSSRIDDLEKNIADLMTQAGVE 62
>sp|Q8K3X8|HSBP1_RAT Heat shock factor-binding protein 1 OS=Rattus norvegicus GN=Hsbp1
PE=3 SV=1
Length = 76
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 44/59 (74%), Gaps = 1/59 (1%)
Query: 8 DPKQNTADMTAFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEMGIE 66
DPK D+T V+ LLQQMQ +FQ MS+ II +ID+M SRID+LE++I DL ++ G+E
Sbjct: 5 DPK-TMQDITLVVETLLQQMQDKFQIMSDQIIGRIDDMSSRIDDLEKNIADLMTQAGVE 62
>sp|Q9CQZ1|HSBP1_MOUSE Heat shock factor-binding protein 1 OS=Mus musculus GN=Hsbp1 PE=2
SV=1
Length = 76
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 44/59 (74%), Gaps = 1/59 (1%)
Query: 8 DPKQNTADMTAFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEMGIE 66
DPK D+T V+ LLQQMQ +FQ MS+ II +ID+M SRID+LE++I DL ++ G+E
Sbjct: 5 DPK-TMQDITLVVETLLQQMQDKFQIMSDQIIGRIDDMSSRIDDLEKNIADLMTQAGVE 62
>sp|D4A9E1|HSBPL_RAT Heat shock factor-binding protein 1-like protein 1 OS=Rattus
norvegicus GN=Hsbp1l1 PE=3 SV=1
Length = 72
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 47/72 (65%), Gaps = 10/72 (13%)
Query: 1 MDSHDSEDPK----QNTADMTAFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSI 56
MD+ E P QN A +NLLQ+++ FQ ++ ++ +++EMG+RI++L++++
Sbjct: 1 MDARTPEVPCGDLLQNAA------ENLLQEVEEHFQALTATLNLRMEEMGNRIEDLQRNV 54
Query: 57 NDLRSEMGIEGS 68
+DL ++ GIE S
Sbjct: 55 DDLMAQAGIENS 66
>sp|B2RXB2|HSBPL_MOUSE Heat shock factor-binding protein 1-like protein 1 OS=Mus
musculus GN=Hsbp1l1 PE=3 SV=1
Length = 72
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 46/72 (63%), Gaps = 10/72 (13%)
Query: 1 MDSHDSEDPK----QNTADMTAFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSI 56
MD+ E P QN A +NLL +++ FQ ++ ++ +++EMGSRI++L++++
Sbjct: 1 MDTRTPEVPCGDLLQNAA------ENLLLEVEEHFQALTTTLNLRMEEMGSRIEDLQRNV 54
Query: 57 NDLRSEMGIEGS 68
+DL ++ GIE S
Sbjct: 55 DDLMTQAGIENS 66
>sp|C9JCN9|HSBPL_HUMAN Heat shock factor-binding protein 1-like protein 1 OS=Homo
sapiens GN=HSBP1L1 PE=3 SV=2
Length = 74
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 36/48 (75%)
Query: 21 QNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEMGIEGS 68
+NL Q++Q FQ ++ ++ +++EMG+RI++L++++ DL + GIE S
Sbjct: 19 ENLFQELQEHFQALTATLNLRMEEMGNRIEDLQKNVKDLMVQAGIENS 66
>sp|O14330|YB7F_SCHPO Uncharacterized protein C16E9.15 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC16E9.15 PE=3 SV=1
Length = 75
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 40/67 (59%), Gaps = 4/67 (5%)
Query: 5 DSEDPKQNTADMTAFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEMG 64
+S++P Q+T+ +T LL+ + F+T+ + K++ M +R+D+LE+S +R M
Sbjct: 8 NSKNP-QSTSAITTLTDKLLEDISGDFETLQKQFSEKLETMSTRLDQLEES---MREAMN 63
Query: 65 IEGSASP 71
+ S SP
Sbjct: 64 KKSSVSP 70
>sp|Q58304|FLAC_METJA Putative flagella-related protein C OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=flaC PE=4 SV=1
Length = 141
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 23/28 (82%)
Query: 35 SESIIAKIDEMGSRIDELEQSINDLRSE 62
+E ++AK++++ S++ +LE SIN+LR E
Sbjct: 4 TEGLLAKVNDIESKLPKLESSINNLRKE 31
>sp|Q7PC83|AB41G_ARATH ABC transporter G family member 41 OS=Arabidopsis thaliana
GN=ABCG41 PE=2 SV=1
Length = 1397
Score = 29.3 bits (64), Expect = 8.5, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 2 DSHDSED-PKQNTADMTAFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLR 60
DS D D K A+ ++ L++Q+++ + I +IDE+G + +E NDL
Sbjct: 56 DSSDIIDVTKLEDAERRLLIEKLVKQIEADNLRLLRKIRKRIDEVGIELPTVEVRFNDLS 115
Query: 61 SEMG---IEGSASPSL 73
E + G P+L
Sbjct: 116 VEAECQVVHGKPIPTL 131
>sp|P35748|MYH11_RABIT Myosin-11 OS=Oryctolagus cuniculus GN=MYH11 PE=2 SV=2
Length = 1972
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 8 DPKQNTADMTAFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEM 63
D K+ D + V++L ++ + RFQ ES+ + +E + D+LE++ N L+ E+
Sbjct: 1375 DSKKKLQDFASTVESL-EEGKKRFQKEIESLTQQYEEKAAAYDKLEKTKNRLQQEL 1429
>sp|Q9LKF9|CPSF2_ARATH Cleavage and polyadenylation specificity factor subunit 2
OS=Arabidopsis thaliana GN=CPSF100 PE=1 SV=2
Length = 739
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 8/69 (11%)
Query: 13 TADMTAFVQNLLQQMQSR--FQTMSESIIAKIDEMGSRIDELEQSINDLRSEMGIEGSAS 70
T+D+ A+ L +++ S F+ + +S +A +D E+ ++ D+RS + + G+AS
Sbjct: 602 TSDLCAYKVQLSEKLMSNVIFKKLGDSEVAWVDS------EVGKTERDMRSLLPMPGAAS 655
Query: 71 PSLPSKSND 79
P P D
Sbjct: 656 PHKPVLVGD 664
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.304 0.121 0.316
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,248,921
Number of Sequences: 539616
Number of extensions: 903444
Number of successful extensions: 3614
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 3553
Number of HSP's gapped (non-prelim): 99
length of query: 86
length of database: 191,569,459
effective HSP length: 56
effective length of query: 30
effective length of database: 161,350,963
effective search space: 4840528890
effective search space used: 4840528890
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 55 (25.8 bits)