Query 034704
Match_columns 86
No_of_seqs 115 out of 157
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 05:37:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034704.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034704hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4117 Heat shock factor bind 100.0 1.3E-32 2.8E-37 179.6 9.0 67 5-71 6-72 (73)
2 PF06825 HSBP1: Heat shock fac 100.0 5.8E-30 1.3E-34 159.1 5.4 54 13-66 1-54 (54)
3 COG3937 Uncharacterized conser 95.0 0.21 4.6E-06 35.2 7.6 54 9-62 37-105 (108)
4 PF10393 Matrilin_ccoil: Trime 94.0 0.21 4.4E-06 30.4 4.9 19 38-56 28-46 (47)
5 PF06705 SF-assemblin: SF-asse 91.3 1.5 3.1E-05 32.8 7.4 46 17-62 69-114 (247)
6 PF05597 Phasin: Poly(hydroxya 91.0 1.7 3.7E-05 30.9 7.2 48 14-61 75-130 (132)
7 TIGR01834 PHA_synth_III_E poly 90.5 1.7 3.7E-05 35.2 7.6 41 24-64 265-313 (320)
8 PF10046 BLOC1_2: Biogenesis o 90.4 2.5 5.4E-05 28.0 7.2 45 14-59 41-85 (99)
9 PF01601 Corona_S2: Coronaviru 90.1 0.43 9.3E-06 41.7 4.1 35 17-55 286-320 (610)
10 PRK13182 racA polar chromosome 88.9 7.5 0.00016 28.6 9.4 26 41-67 126-151 (175)
11 PF14261 DUF4351: Domain of un 87.5 0.64 1.4E-05 28.8 2.6 40 19-60 8-47 (59)
12 PF05377 FlaC_arch: Flagella a 86.2 2.9 6.4E-05 26.2 5.1 36 26-61 4-42 (55)
13 PF07304 SRA1: Steroid recepto 85.9 1.7 3.7E-05 31.2 4.4 40 19-58 43-83 (157)
14 TIGR01837 PHA_granule_1 poly(h 84.4 6.9 0.00015 26.8 6.7 19 42-60 98-116 (118)
15 PF01519 DUF16: Protein of unk 84.3 2 4.4E-05 29.9 4.0 21 33-53 81-101 (102)
16 PF10158 LOH1CR12: Tumour supp 84.0 7.5 0.00016 27.5 6.9 48 14-62 59-109 (131)
17 PF10779 XhlA: Haemolysin XhlA 83.6 2.8 6.2E-05 26.2 4.2 31 25-59 2-32 (71)
18 PF07889 DUF1664: Protein of u 83.0 9.6 0.00021 27.1 7.1 50 11-60 39-88 (126)
19 PF04513 Baculo_PEP_C: Baculov 82.2 11 0.00024 27.4 7.3 44 18-61 34-77 (140)
20 PF15070 GOLGA2L5: Putative go 81.7 13 0.00027 32.4 8.7 54 17-70 14-73 (617)
21 PF04344 CheZ: Chemotaxis phos 81.2 3.5 7.6E-05 30.9 4.6 37 31-70 129-165 (214)
22 PRK13729 conjugal transfer pil 79.0 19 0.00041 30.8 8.7 40 24-63 78-120 (475)
23 PF13747 DUF4164: Domain of un 77.2 11 0.00024 24.8 5.6 40 19-59 5-44 (89)
24 PF06705 SF-assemblin: SF-asse 76.8 12 0.00027 27.8 6.4 47 15-64 63-109 (247)
25 PF04508 Pox_A_type_inc: Viral 76.5 3.5 7.6E-05 21.9 2.4 18 42-59 3-20 (23)
26 PF06825 HSBP1: Heat shock fac 76.2 9.8 0.00021 23.6 4.8 37 25-61 6-42 (54)
27 PF10158 LOH1CR12: Tumour supp 75.4 18 0.0004 25.6 6.6 47 18-64 27-73 (131)
28 KOG4117 Heat shock factor bind 75.1 16 0.00034 24.3 5.7 40 14-53 22-61 (73)
29 PHA03332 membrane glycoprotein 74.5 11 0.00023 35.8 6.5 48 14-61 901-951 (1328)
30 PF09712 PHA_synth_III_E: Poly 74.5 19 0.00042 28.2 7.1 36 25-60 249-292 (293)
31 PF04380 BMFP: Membrane fusoge 74.3 20 0.00044 23.0 7.1 19 43-61 60-78 (79)
32 PF09903 DUF2130: Uncharacteri 73.6 22 0.00048 27.7 7.2 40 21-60 197-236 (267)
33 PF04513 Baculo_PEP_C: Baculov 72.6 32 0.0007 25.0 7.4 48 15-62 49-100 (140)
34 PF05531 NPV_P10: Nucleopolyhe 70.6 12 0.00027 24.7 4.5 44 20-64 23-66 (75)
35 PF04546 Sigma70_ner: Sigma-70 70.4 4.3 9.2E-05 29.7 2.5 48 19-66 107-161 (211)
36 KOG4559 Uncharacterized conser 70.3 29 0.00064 24.8 6.6 44 15-59 69-115 (120)
37 PF02994 Transposase_22: L1 tr 70.0 5.1 0.00011 32.2 3.1 24 37-60 141-164 (370)
38 PRK11166 chemotaxis regulator 70.0 45 0.00098 25.6 8.1 33 31-66 141-173 (214)
39 KOG0804 Cytoplasmic Zn-finger 69.5 23 0.0005 30.6 7.0 50 12-61 372-449 (493)
40 PF03670 UPF0184: Uncharacteri 68.8 10 0.00022 25.6 3.9 28 34-61 34-61 (83)
41 TIGR02135 phoU_full phosphate 68.8 34 0.00073 23.3 6.6 50 12-61 117-166 (212)
42 PRK10884 SH3 domain-containing 68.1 49 0.0011 24.9 8.1 51 12-62 90-140 (206)
43 PRK09841 cryptic autophosphory 67.3 28 0.00061 30.0 7.1 63 6-68 236-302 (726)
44 PF07439 DUF1515: Protein of u 66.6 31 0.00067 24.5 6.1 26 36-61 36-61 (112)
45 PF12841 YvrJ: YvrJ protein fa 66.1 7.3 0.00016 22.6 2.4 17 45-61 20-36 (38)
46 PF07889 DUF1664: Protein of u 66.0 38 0.00082 24.0 6.5 44 15-62 40-83 (126)
47 PRK06771 hypothetical protein; 65.3 17 0.00037 25.0 4.5 26 45-70 28-53 (93)
48 PF00103 Hormone_1: Somatotrop 64.8 16 0.00035 27.1 4.6 54 12-65 89-152 (214)
49 PRK04406 hypothetical protein; 64.3 6.8 0.00015 25.3 2.3 15 49-63 41-55 (75)
50 PF11101 DUF2884: Protein of u 64.1 32 0.00069 25.9 6.2 43 13-55 169-211 (229)
51 TIGR03017 EpsF chain length de 64.0 60 0.0013 25.5 7.9 40 31-70 169-208 (444)
52 PF00509 Hemagglutinin: Haemag 63.6 0.75 1.6E-05 39.8 -2.9 45 13-61 373-417 (550)
53 PRK00286 xseA exodeoxyribonucl 63.1 49 0.0011 26.5 7.4 45 16-60 321-370 (438)
54 PRK14127 cell division protein 61.8 51 0.0011 22.9 7.6 43 20-66 28-70 (109)
55 KOG0810 SNARE protein Syntaxin 60.8 16 0.00036 29.1 4.3 11 49-59 208-218 (297)
56 PRK11115 transcriptional regul 60.3 54 0.0012 23.4 6.6 51 13-63 25-75 (236)
57 PF02646 RmuC: RmuC family; I 59.6 49 0.0011 25.7 6.7 40 20-63 238-277 (304)
58 PF05929 Phage_GPO: Phage caps 59.3 84 0.0018 25.0 8.0 58 12-69 193-257 (276)
59 COG5570 Uncharacterized small 58.6 13 0.00027 23.7 2.7 30 38-67 3-32 (57)
60 PF15136 UPF0449: Uncharacteri 58.4 23 0.0005 24.4 4.2 32 27-58 65-96 (97)
61 PF06937 EURL: EURL protein; 57.1 26 0.00055 28.4 4.8 31 11-41 219-249 (285)
62 cd00890 Prefoldin Prefoldin is 56.4 40 0.00087 21.9 5.0 7 48-54 102-108 (129)
63 PF12462 Helicase_IV_N: DNA he 56.2 59 0.0013 23.3 6.2 42 13-54 75-116 (166)
64 cd00632 Prefoldin_beta Prefold 56.1 55 0.0012 21.4 6.2 19 41-59 78-96 (105)
65 PRK11546 zraP zinc resistance 55.8 77 0.0017 23.0 7.5 51 13-63 45-105 (143)
66 PF01920 Prefoldin_2: Prefoldi 55.3 46 0.00099 20.8 5.0 35 25-59 1-38 (106)
67 cd00632 Prefoldin_beta Prefold 55.0 40 0.00086 22.1 4.8 26 37-62 67-92 (105)
68 PF04102 SlyX: SlyX; InterPro 54.8 50 0.0011 20.5 5.6 19 45-63 30-48 (69)
69 TIGR02135 phoU_full phosphate 54.4 66 0.0014 21.8 6.7 47 13-59 14-60 (212)
70 PRK00965 tetrahydromethanopter 54.4 18 0.0004 24.9 3.2 31 42-72 33-63 (96)
71 PF05440 MtrB: Tetrahydrometha 54.3 20 0.00043 24.7 3.3 31 42-72 32-62 (97)
72 PF13887 MRF_C1: Myelin gene r 54.2 9.2 0.0002 22.4 1.4 12 43-54 24-35 (36)
73 PF11074 DUF2779: Domain of un 54.2 50 0.0011 23.0 5.4 39 16-60 57-105 (130)
74 TIGR03007 pepcterm_ChnLen poly 53.6 50 0.0011 26.5 6.0 38 31-68 159-196 (498)
75 PRK11519 tyrosine kinase; Prov 52.7 81 0.0017 27.2 7.4 61 7-67 237-301 (719)
76 PRK00846 hypothetical protein; 52.6 17 0.00036 24.0 2.7 16 48-63 42-57 (77)
77 PF03500 Cellsynth_D: Cellulos 52.1 88 0.0019 22.9 6.6 46 17-64 2-59 (144)
78 TIGR01005 eps_transp_fam exopo 52.0 88 0.0019 26.7 7.5 62 7-68 164-229 (754)
79 COG3143 CheZ Chemotaxis protei 51.5 1.1E+02 0.0025 23.9 7.4 33 27-62 140-172 (217)
80 PF10975 DUF2802: Protein of u 51.4 17 0.00038 23.0 2.5 19 45-63 3-21 (70)
81 COG0783 Dps DNA-binding ferrit 50.0 33 0.00072 24.9 4.1 48 24-71 46-97 (156)
82 PF04799 Fzo_mitofusin: fzo-li 49.2 45 0.00097 25.0 4.8 30 26-55 106-135 (171)
83 PF02524 KID: KID repeat; Int 49.1 5.5 0.00012 18.0 -0.0 10 48-57 1-10 (11)
84 PF03310 Cauli_DNA-bind: Cauli 48.9 92 0.002 22.3 6.1 32 31-62 35-69 (121)
85 PF06008 Laminin_I: Laminin Do 48.5 1.1E+02 0.0025 22.8 7.5 44 18-61 156-206 (264)
86 PRK03100 sec-independent trans 48.4 94 0.002 22.4 6.2 45 15-60 25-70 (136)
87 KOG0500 Cyclic nucleotide-gate 47.8 1.1E+02 0.0024 26.9 7.5 53 7-59 453-505 (536)
88 TIGR02976 phageshock_pspB phag 47.8 31 0.00066 22.5 3.3 22 36-57 45-66 (75)
89 PF05791 Bacillus_HBL: Bacillu 47.1 1.1E+02 0.0023 22.2 6.7 35 28-62 144-178 (184)
90 COG4575 ElaB Uncharacterized c 46.9 91 0.002 21.8 5.7 42 11-52 37-78 (104)
91 TIGR01010 BexC_CtrB_KpsE polys 46.9 53 0.0012 25.4 5.1 36 34-69 171-206 (362)
92 COG1322 Predicted nuclease of 46.9 53 0.0012 27.7 5.4 47 12-58 103-150 (448)
93 PF02185 HR1: Hr1 repeat; Int 46.9 43 0.00094 20.4 3.8 48 19-66 19-66 (70)
94 PF08826 DMPK_coil: DMPK coile 46.8 72 0.0016 20.1 6.7 41 22-63 15-55 (61)
95 TIGR02338 gimC_beta prefoldin, 46.1 65 0.0014 21.3 4.8 17 43-59 91-107 (110)
96 PF15134 DUF4570: Domain of un 46.0 1E+02 0.0023 21.7 6.5 44 14-57 16-69 (109)
97 PF10152 DUF2360: Predicted co 45.9 78 0.0017 22.4 5.4 28 29-59 13-40 (148)
98 PF02865 STAT_int: STAT protei 45.4 72 0.0016 22.2 5.1 33 10-42 50-84 (124)
99 PF10805 DUF2730: Protein of u 45.2 84 0.0018 21.0 5.2 38 24-61 51-93 (106)
100 PF03105 SPX: SPX domain; Int 45.1 1.1E+02 0.0023 21.5 7.4 50 15-64 88-137 (275)
101 PF10267 Tmemb_cc2: Predicted 44.9 1.5E+02 0.0033 24.7 7.6 38 24-61 235-272 (395)
102 PF01895 PhoU: PhoU domain; I 44.0 64 0.0014 18.7 7.2 45 15-59 3-47 (88)
103 PF03980 Nnf1: Nnf1 ; InterPr 44.0 90 0.002 20.4 7.7 20 43-62 30-49 (109)
104 PHA03385 IX capsid protein IX, 43.7 37 0.0008 24.9 3.5 27 37-63 104-130 (135)
105 TIGR00237 xseA exodeoxyribonuc 43.4 1.4E+02 0.0029 24.5 7.1 18 41-58 301-318 (432)
106 PF06008 Laminin_I: Laminin Do 43.2 1E+02 0.0022 23.1 5.9 22 9-30 121-142 (264)
107 PF15397 DUF4618: Domain of un 43.2 1.7E+02 0.0036 23.2 7.7 23 42-64 202-224 (258)
108 PF00170 bZIP_1: bZIP transcri 43.0 73 0.0016 19.0 6.1 37 22-62 26-62 (64)
109 PF05546 She9_MDM33: She9 / Md 42.8 1.6E+02 0.0034 22.8 7.3 47 16-62 3-54 (207)
110 PRK13729 conjugal transfer pil 42.6 28 0.00062 29.8 3.2 19 38-56 102-120 (475)
111 PF11945 WASH_WAHD: WAHD domai 42.4 1.5E+02 0.0033 23.6 7.1 47 15-61 22-71 (297)
112 PF05565 Sipho_Gp157: Siphovir 42.3 1.2E+02 0.0027 21.5 7.4 28 44-71 72-99 (162)
113 PF07586 HXXSHH: Protein of un 42.2 1.5E+02 0.0032 22.7 6.8 48 18-65 162-209 (302)
114 PF05531 NPV_P10: Nucleopolyhe 42.2 98 0.0021 20.4 5.0 23 40-62 35-57 (75)
115 PF13864 Enkurin: Calmodulin-b 41.8 98 0.0021 20.2 6.0 36 24-59 53-93 (98)
116 PF09789 DUF2353: Uncharacteri 41.4 93 0.002 25.3 5.8 50 7-58 268-318 (319)
117 PRK00286 xseA exodeoxyribonucl 40.0 1.8E+02 0.0039 23.3 7.2 16 42-57 307-322 (438)
118 COG5460 Uncharacterized conser 39.8 28 0.0006 23.6 2.2 21 36-56 60-80 (82)
119 PF00210 Ferritin: Ferritin-li 39.6 57 0.0012 20.6 3.6 30 25-54 31-60 (142)
120 smart00503 SynN Syntaxin N-ter 39.6 98 0.0021 19.5 6.6 30 27-56 44-73 (117)
121 PF00517 GP41: Retroviral enve 39.5 1.6E+02 0.0034 21.9 6.7 38 24-61 30-67 (204)
122 cd01043 DPS DPS protein, ferri 39.3 66 0.0014 21.3 4.0 44 24-67 29-76 (139)
123 PF08946 Osmo_CC: Osmosensory 38.9 70 0.0015 19.6 3.7 27 36-62 15-41 (46)
124 PF06875 PRF: Plethodontid rec 38.9 89 0.0019 24.3 5.1 35 36-70 130-164 (214)
125 TIGR03185 DNA_S_dndD DNA sulfu 38.2 1.3E+02 0.0028 25.6 6.4 38 20-57 378-415 (650)
126 PF08776 VASP_tetra: VASP tetr 38.2 88 0.0019 18.6 5.8 30 13-42 2-31 (40)
127 PF07195 FliD_C: Flagellar hoo 38.2 91 0.002 23.0 5.0 19 40-58 193-211 (239)
128 PF06156 DUF972: Protein of un 37.9 73 0.0016 21.8 4.1 11 28-38 21-31 (107)
129 TIGR02338 gimC_beta prefoldin, 37.8 1.2E+02 0.0026 20.0 6.7 27 36-62 70-96 (110)
130 COG3206 GumC Uncharacterized p 37.8 1.9E+02 0.004 23.3 7.0 52 17-68 179-230 (458)
131 PF02994 Transposase_22: L1 tr 37.6 25 0.00053 28.3 2.0 13 47-59 172-184 (370)
132 PF09580 Spore_YhcN_YlaJ: Spor 37.5 62 0.0013 22.5 3.8 30 35-64 141-176 (177)
133 cd00193 t_SNARE Soluble NSF (N 36.9 76 0.0016 17.5 5.6 36 20-59 11-46 (60)
134 PF02601 Exonuc_VII_L: Exonucl 36.9 1.9E+02 0.0041 22.0 7.1 17 42-58 193-209 (319)
135 PF12732 YtxH: YtxH-like prote 36.8 1E+02 0.0022 18.9 6.8 51 7-60 22-72 (74)
136 PF09731 Mitofilin: Mitochondr 36.8 2.4E+02 0.0053 23.3 7.7 48 15-62 345-400 (582)
137 PF12205 GIT1_C: G protein-cou 36.8 1.5E+02 0.0033 20.9 5.8 34 14-47 19-56 (123)
138 PF12296 HsbA: Hydrophobic sur 36.4 91 0.002 20.1 4.3 42 15-56 75-121 (124)
139 PF05164 ZapA: Cell division p 36.3 1E+02 0.0022 18.8 4.3 10 18-27 28-37 (89)
140 PF12896 Apc4: Anaphase-promot 36.2 1.6E+02 0.0034 20.9 7.2 44 16-59 25-68 (210)
141 PF06120 Phage_HK97_TLTM: Tail 36.0 96 0.0021 25.0 5.1 41 23-63 56-104 (301)
142 smart00338 BRLZ basic region l 35.8 98 0.0021 18.4 5.4 36 23-62 27-62 (65)
143 cd00890 Prefoldin Prefoldin is 35.7 85 0.0018 20.3 4.0 26 36-61 97-122 (129)
144 cd01111 HTH_MerD Helix-Turn-He 35.5 1.3E+02 0.0029 19.9 5.5 29 31-59 78-106 (107)
145 KOG3313 Molecular chaperone Pr 35.5 1.1E+02 0.0024 23.5 5.1 34 24-57 42-75 (187)
146 PF06667 PspB: Phage shock pro 35.5 68 0.0015 20.9 3.5 20 37-56 46-65 (75)
147 KOG3681 Alpha-catenin [Extrace 35.4 1.1E+02 0.0025 28.2 5.9 48 15-62 322-371 (835)
148 PF05873 Mt_ATP-synt_D: ATP sy 35.3 55 0.0012 23.6 3.3 44 21-64 84-127 (161)
149 KOG4460 Nuclear pore complex, 34.9 1.3E+02 0.0029 27.2 6.1 43 31-73 614-656 (741)
150 PRK09458 pspB phage shock prot 34.7 71 0.0015 21.1 3.5 18 39-56 48-65 (75)
151 PRK09448 DNA starvation/statio 34.7 77 0.0017 22.5 4.0 44 24-67 53-100 (162)
152 COG4582 Uncharacterized protei 34.7 1.9E+02 0.0042 23.0 6.4 49 20-68 18-80 (244)
153 TIGR02132 phaR_Bmeg polyhydrox 34.7 2.1E+02 0.0046 22.0 7.3 53 12-64 43-103 (189)
154 PF04336 DUF479: Protein of un 34.6 1.4E+02 0.0029 19.7 5.3 15 15-29 16-30 (106)
155 PF04728 LPP: Lipoprotein leuc 34.6 1.1E+02 0.0025 19.1 4.3 16 45-60 15-30 (56)
156 PF05010 TACC: Transforming ac 34.4 2.1E+02 0.0045 21.8 7.5 27 38-64 35-61 (207)
157 PF10046 BLOC1_2: Biogenesis o 34.4 1.4E+02 0.0029 19.7 7.3 47 15-61 7-56 (99)
158 cd01052 DPSL DPS-like protein, 34.3 99 0.0022 20.3 4.2 30 24-53 37-66 (148)
159 PF10280 Med11: Mediator compl 34.1 38 0.00083 23.0 2.3 18 48-65 7-24 (117)
160 PF08653 DASH_Dam1: DASH compl 33.9 66 0.0014 20.1 3.1 10 29-38 5-14 (58)
161 cd00584 Prefoldin_alpha Prefol 33.7 1.4E+02 0.0031 19.7 5.7 37 21-61 5-41 (129)
162 PRK10947 global DNA-binding tr 33.6 1.8E+02 0.0038 20.7 6.7 18 23-40 25-42 (135)
163 PF05537 DUF759: Borrelia burg 33.5 1.4E+02 0.0031 25.5 5.9 32 49-81 398-429 (431)
164 PF01920 Prefoldin_2: Prefoldi 33.3 1.2E+02 0.0027 18.8 4.9 16 43-58 79-94 (106)
165 COG4467 Regulator of replicati 33.2 86 0.0019 22.4 3.9 28 37-64 5-32 (114)
166 PRK15374 pathogenicity island 33.2 2.6E+02 0.0055 25.0 7.5 34 39-72 147-180 (593)
167 PF11172 DUF2959: Protein of u 32.9 1.4E+02 0.0031 23.0 5.3 36 24-59 165-200 (201)
168 PF04102 SlyX: SlyX; InterPro 32.1 1.3E+02 0.0028 18.7 6.8 34 32-65 21-57 (69)
169 PRK05658 RNA polymerase sigma 32.1 2.3E+02 0.005 24.1 7.0 32 35-66 273-304 (619)
170 KOG1106 Uncharacterized conser 31.5 1.7E+02 0.0037 22.2 5.5 33 25-57 124-160 (177)
171 COG3416 Uncharacterized protei 31.5 1.1E+02 0.0024 24.3 4.6 21 42-62 57-77 (233)
172 COG3159 Uncharacterized protei 31.5 42 0.00091 26.2 2.3 24 42-65 47-70 (218)
173 PRK06665 flgK flagellar hook-a 31.2 2.7E+02 0.0058 24.1 7.2 42 24-65 155-196 (627)
174 PLN02554 UDP-glycosyltransfera 30.9 2.1E+02 0.0046 23.4 6.4 51 11-61 425-478 (481)
175 PHA03386 P10 fibrous body prot 30.7 1.8E+02 0.004 20.1 6.3 39 20-66 24-62 (94)
176 COG3609 Predicted transcriptio 30.5 1E+02 0.0022 20.1 3.7 47 13-61 10-56 (89)
177 COG0598 CorA Mg2+ and Co2+ tra 30.4 85 0.0018 24.3 3.8 26 18-43 139-164 (322)
178 smart00190 IL4_13 Interleukins 30.2 75 0.0016 23.2 3.3 18 15-32 117-134 (138)
179 COG3599 DivIVA Cell division i 30.1 1.8E+02 0.0038 22.2 5.4 37 19-59 27-63 (212)
180 PF15249 GLTSCR1: Glioma tumor 30.0 1E+02 0.0023 20.6 3.8 26 27-52 53-78 (109)
181 PHA03395 p10 fibrous body prot 30.0 1.8E+02 0.0039 19.8 6.2 56 19-75 22-77 (87)
182 PF09177 Syntaxin-6_N: Syntaxi 29.8 1.6E+02 0.0034 19.0 7.3 24 34-57 40-63 (97)
183 PF12128 DUF3584: Protein of u 29.6 2.9E+02 0.0062 25.6 7.5 53 15-67 718-770 (1201)
184 PF11101 DUF2884: Protein of u 29.4 2.5E+02 0.0053 21.1 8.3 47 15-61 136-188 (229)
185 PRK07737 fliD flagellar cappin 29.4 3E+02 0.0065 23.1 7.1 22 38-59 446-467 (501)
186 PF01297 TroA: Periplasmic sol 29.2 2.3E+02 0.0049 20.6 6.6 52 12-63 97-148 (256)
187 PRK00182 tatB sec-independent 29.1 2E+02 0.0044 21.3 5.5 35 25-59 34-69 (160)
188 PF14931 IFT20: Intraflagellar 29.1 2E+02 0.0044 20.0 6.0 38 13-51 22-59 (120)
189 COG2960 Uncharacterized protei 29.0 2.1E+02 0.0045 20.1 6.7 40 25-64 36-90 (103)
190 TIGR00237 xseA exodeoxyribonuc 29.0 3.2E+02 0.007 22.3 7.4 44 16-59 316-364 (432)
191 PF07544 Med9: RNA polymerase 28.9 1.6E+02 0.0035 18.8 5.2 49 9-62 19-67 (83)
192 PF01420 Methylase_S: Type I r 28.9 1.4E+02 0.0031 18.9 4.2 27 35-62 141-167 (167)
193 PHA02604 rI.-1 hypothetical pr 28.8 2.1E+02 0.0045 20.8 5.3 36 15-50 82-117 (126)
194 PF04678 DUF607: Protein of un 28.6 2.3E+02 0.0049 20.4 6.5 51 13-63 35-87 (180)
195 PRK06285 chorismate mutase; Pr 28.4 90 0.0019 20.3 3.2 25 38-62 5-29 (96)
196 PF09304 Cortex-I_coil: Cortex 28.1 2.2E+02 0.0047 20.0 6.1 23 36-58 54-76 (107)
197 KOG0796 Spliceosome subunit [R 27.9 3.1E+02 0.0067 22.6 6.8 29 40-68 112-143 (319)
198 TIGR01834 PHA_synth_III_E poly 27.9 88 0.0019 25.5 3.7 27 36-62 292-318 (320)
199 KOG4057 Uncharacterized conser 27.8 50 0.0011 25.1 2.1 17 48-64 13-29 (180)
200 PF06698 DUF1192: Protein of u 27.8 96 0.0021 19.5 3.1 21 42-62 23-43 (59)
201 PF08020 DUF1706: Protein of u 27.7 57 0.0012 23.7 2.4 48 10-61 4-51 (166)
202 cd01145 TroA_c Periplasmic bin 27.7 2.3E+02 0.005 20.2 6.0 51 12-62 113-163 (203)
203 PRK08471 flgK flagellar hook-a 27.5 3.4E+02 0.0073 23.5 7.2 42 24-65 148-189 (613)
204 PRK09546 zntB zinc transporter 27.5 1.1E+02 0.0023 23.5 4.0 32 18-49 142-173 (324)
205 PF02646 RmuC: RmuC family; I 27.4 3E+02 0.0064 21.4 6.9 42 15-57 17-58 (304)
206 PF03670 UPF0184: Uncharacteri 27.3 2E+02 0.0043 19.3 4.9 28 36-63 29-56 (83)
207 KOG3614 Ca2+/Mg2+-permeable ca 27.1 1.8E+02 0.004 28.3 6.0 45 17-61 1121-1176(1381)
208 PF15469 Sec5: Exocyst complex 27.1 2.2E+02 0.0048 19.8 5.8 49 18-67 124-172 (182)
209 PF03148 Tektin: Tektin family 27.1 3.3E+02 0.0073 21.9 7.6 39 20-58 231-269 (384)
210 KOG2336 Molybdopterin biosynth 27.0 1.1E+02 0.0024 25.8 4.1 28 42-69 5-32 (422)
211 PF14071 YlbD_coat: Putative c 27.0 1.2E+02 0.0025 21.8 3.8 26 43-68 80-108 (124)
212 PF05842 Euplotes_phero: Euplo 27.0 49 0.0011 24.2 1.9 18 16-33 3-21 (134)
213 TIGR01803 CM-like chorismate m 26.9 72 0.0016 20.1 2.5 20 43-62 2-21 (82)
214 TIGR00414 serS seryl-tRNA synt 26.9 3.5E+02 0.0076 22.1 8.5 55 22-76 44-117 (418)
215 PF05008 V-SNARE: Vesicle tran 26.9 1.5E+02 0.0033 17.9 4.6 36 21-56 38-77 (79)
216 KOG2196 Nuclear porin [Nuclear 26.8 2E+02 0.0043 23.1 5.4 26 33-58 178-203 (254)
217 PHA02675 ORF104 fusion protein 26.5 2.2E+02 0.0048 19.6 6.4 39 19-61 34-72 (90)
218 PF09277 Erythro-docking: Eryt 26.4 40 0.00086 21.5 1.2 20 45-64 8-27 (58)
219 PF00957 Synaptobrevin: Synapt 26.3 1.7E+02 0.0037 18.2 6.6 25 40-64 24-48 (89)
220 PHA02557 22 prohead core prote 26.2 2.6E+02 0.0057 22.5 6.0 42 21-62 118-163 (271)
221 PRK00420 hypothetical protein; 26.1 1.7E+02 0.0036 20.4 4.4 39 18-56 69-108 (112)
222 PF02388 FemAB: FemAB family; 26.0 3.5E+02 0.0076 21.8 7.6 47 15-61 242-294 (406)
223 PRK08032 fliD flagellar cappin 25.9 3.6E+02 0.0078 22.2 6.9 51 12-62 369-435 (462)
224 PHA01750 hypothetical protein 25.6 2.1E+02 0.0045 19.0 6.0 25 38-62 47-71 (75)
225 PF03233 Cauli_AT: Aphid trans 25.6 2.9E+02 0.0062 20.7 5.8 40 20-59 85-130 (163)
226 TIGR00293 prefoldin, archaeal 25.5 2E+02 0.0044 18.9 5.7 29 31-59 11-39 (126)
227 PF04582 Reo_sigmaC: Reovirus 25.5 1.9E+02 0.004 23.8 5.1 42 20-61 110-154 (326)
228 TIGR01013 2a58 Phosphate:Na+ S 25.3 1.1E+02 0.0023 24.8 3.7 47 13-59 380-426 (456)
229 PF06657 Cep57_MT_bd: Centroso 25.2 2E+02 0.0042 18.5 5.9 45 20-64 15-67 (79)
230 PF07400 IL11: Interleukin 11; 25.1 1.8E+02 0.004 22.5 4.8 36 40-75 124-161 (199)
231 PRK00892 lpxD UDP-3-O-[3-hydro 25.0 52 0.0011 25.5 1.9 20 37-56 321-340 (343)
232 PHA03332 membrane glycoprotein 25.0 1.8E+02 0.0038 28.2 5.4 40 16-55 924-963 (1328)
233 PF02108 FliH: Flagellar assem 24.9 1.9E+02 0.0041 18.3 5.3 37 13-49 4-40 (128)
234 KOG2802 Membrane protein HUEL 24.9 75 0.0016 27.5 2.9 21 40-60 472-492 (503)
235 cd01040 globin Globins are hem 24.8 1.5E+02 0.0032 18.6 3.7 35 30-65 56-90 (140)
236 cd00082 HisKA Histidine Kinase 24.8 1.1E+02 0.0024 15.6 4.8 24 37-60 38-61 (65)
237 COG3352 FlaC Putative archaeal 24.6 2.2E+02 0.0048 21.3 5.0 21 42-62 74-94 (157)
238 PF07047 OPA3: Optic atrophy 3 24.5 1.2E+02 0.0025 21.1 3.4 23 40-62 105-127 (134)
239 PF05816 TelA: Toxic anion res 24.3 3E+02 0.0066 21.6 6.0 36 22-57 84-119 (333)
240 PF01402 RHH_1: Ribbon-helix-h 24.3 44 0.00095 17.8 1.0 27 34-63 6-32 (39)
241 COG4839 FtsL Protein required 24.3 2.8E+02 0.006 19.9 5.3 23 39-61 73-95 (120)
242 cd05511 Bromo_TFIID Bromodomai 24.2 1E+02 0.0022 20.6 3.0 24 34-57 89-112 (112)
243 PF13990 YjcZ: YjcZ-like prote 24.0 2.4E+02 0.0051 22.7 5.4 36 30-65 91-128 (270)
244 KOG3759 Uncharacterized RUN do 24.0 5.2E+02 0.011 23.1 8.5 54 8-65 199-252 (621)
245 COG0013 AlaS Alanyl-tRNA synth 23.9 1.6E+02 0.0034 27.3 4.8 43 18-61 711-753 (879)
246 smart00709 Zpr1 Duplicated dom 23.7 1.8E+02 0.0039 21.0 4.3 41 20-60 98-139 (160)
247 PRK05683 flgK flagellar hook-a 23.6 4.2E+02 0.0092 23.4 7.2 41 24-64 143-183 (676)
248 PF12792 CSS-motif: CSS motif 23.6 2.3E+02 0.005 19.0 4.7 28 14-42 5-32 (208)
249 COG4062 MtrB Tetrahydromethano 23.5 1.3E+02 0.0028 21.3 3.4 31 38-68 29-59 (108)
250 PRK06975 bifunctional uroporph 23.4 4.7E+02 0.01 22.7 7.4 21 40-60 378-398 (656)
251 cd07307 BAR The Bin/Amphiphysi 23.4 2.2E+02 0.0047 18.4 7.2 41 14-54 64-105 (194)
252 KOG1511 Mevalonate kinase MVK/ 23.4 1.8E+02 0.0038 24.8 4.7 34 10-47 240-273 (397)
253 PF05130 FlgN: FlgN protein; 23.3 2E+02 0.0044 18.1 8.1 52 15-66 12-70 (143)
254 COG1394 NtpD Archaeal/vacuolar 23.3 2.5E+02 0.0054 21.5 5.2 38 15-56 132-171 (211)
255 COG4570 Rus Holliday junction 23.3 69 0.0015 23.2 2.1 19 49-67 84-102 (132)
256 PRK07857 hypothetical protein; 23.1 1.3E+02 0.0028 20.9 3.3 22 41-62 29-50 (106)
257 PF04163 Tht1: Tht1-like nucle 23.0 3.8E+02 0.0083 23.3 6.8 35 12-46 383-424 (544)
258 PF00509 Hemagglutinin: Haemag 22.8 12 0.00027 32.6 -2.2 44 20-63 369-412 (550)
259 PF05565 Sipho_Gp157: Siphovir 22.7 2.9E+02 0.0062 19.6 7.4 40 20-59 27-66 (162)
260 KOG4302 Microtubule-associated 22.6 2.8E+02 0.0061 24.9 6.0 44 22-69 160-203 (660)
261 TIGR00996 Mtu_fam_mce virulenc 22.6 3E+02 0.0064 20.5 5.4 18 10-27 129-146 (291)
262 PF13758 Prefoldin_3: Prefoldi 22.4 1.8E+02 0.0039 20.1 3.9 22 42-63 70-91 (99)
263 PF08581 Tup_N: Tup N-terminal 22.3 2.3E+02 0.0051 18.4 6.9 40 20-59 2-58 (79)
264 cd00907 Bacterioferritin Bacte 22.3 2E+02 0.0044 18.9 4.1 26 26-51 38-63 (153)
265 PRK13169 DNA replication intia 22.3 1.9E+02 0.0041 20.0 4.1 13 27-39 20-32 (110)
266 PRK12714 flgK flagellar hook-a 22.3 4.8E+02 0.01 22.5 7.2 41 24-64 143-183 (624)
267 cd07666 BAR_SNX7 The Bin/Amphi 22.3 1.8E+02 0.0038 22.6 4.3 38 22-59 30-73 (243)
268 COG1842 PspA Phage shock prote 22.2 3.3E+02 0.0072 20.8 5.7 43 16-62 11-53 (225)
269 PF06373 CART: Cocaine and amp 22.0 30 0.00065 23.0 0.0 22 9-30 3-24 (73)
270 TIGR01795 CM_mono_cladeE monof 21.9 1.4E+02 0.003 19.7 3.2 23 40-62 3-25 (94)
271 PF15027 DUF4525: Domain of un 21.8 1.4E+02 0.0031 21.9 3.5 28 34-61 80-107 (138)
272 PF11328 DUF3130: Protein of u 21.7 2.8E+02 0.006 19.1 5.3 39 12-51 42-80 (90)
273 PRK05563 DNA polymerase III su 21.7 1.1E+02 0.0024 25.9 3.2 21 42-62 371-391 (559)
274 PRK04778 septation ring format 21.4 2.6E+02 0.0056 23.6 5.4 36 24-59 142-177 (569)
275 PF04977 DivIC: Septum formati 21.4 1.1E+02 0.0024 18.1 2.5 22 38-59 29-50 (80)
276 PF00435 Spectrin: Spectrin re 21.4 1.8E+02 0.004 16.8 4.9 25 35-59 75-99 (105)
277 PF02601 Exonuc_VII_L: Exonucl 21.1 3E+02 0.0065 20.9 5.3 44 16-59 141-184 (319)
278 PRK09514 zntR zinc-responsive 21.0 2.2E+02 0.0049 19.6 4.2 21 36-56 84-104 (140)
279 PF04888 SseC: Secretion syste 21.0 3.8E+02 0.0082 20.3 6.4 39 24-62 256-294 (306)
280 PF06160 EzrA: Septation ring 20.9 2.3E+02 0.0049 24.0 5.0 37 24-60 138-174 (560)
281 cd00592 HTH_MerR-like Helix-Tu 20.9 2E+02 0.0044 17.9 3.7 16 38-53 82-97 (100)
282 PRK10626 hypothetical protein; 20.7 4.2E+02 0.0092 20.8 6.8 37 25-61 200-236 (239)
283 PRK10361 DNA recombination pro 20.6 3.7E+02 0.008 23.1 6.1 36 24-63 375-410 (475)
284 PF04582 Reo_sigmaC: Reovirus 20.6 33 0.00072 28.0 0.0 49 12-61 26-77 (326)
285 PF05769 DUF837: Protein of un 20.6 2E+02 0.0043 21.2 4.1 37 14-51 6-42 (181)
286 PRK11115 transcriptional regul 20.4 3.3E+02 0.0071 19.4 6.1 46 12-57 127-172 (236)
287 PRK08027 flgL flagellar hook-a 20.4 3.5E+02 0.0076 21.0 5.6 31 24-54 229-259 (317)
288 PF13758 Prefoldin_3: Prefoldi 20.4 1.5E+02 0.0032 20.5 3.2 27 33-59 68-94 (99)
289 PF06305 DUF1049: Protein of u 20.3 1.1E+02 0.0024 18.0 2.3 19 41-59 49-67 (68)
290 PRK05431 seryl-tRNA synthetase 20.3 4.9E+02 0.011 21.3 6.7 55 21-75 41-113 (425)
291 PRK07075 isochorismate-pyruvat 20.3 1.5E+02 0.0032 19.7 3.1 22 41-62 9-30 (101)
292 PF15145 DUF4577: Domain of un 20.1 71 0.0015 23.2 1.6 20 40-59 90-109 (128)
No 1
>KOG4117 consensus Heat shock factor binding protein [Transcription; Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=1.3e-32 Score=179.63 Aligned_cols=67 Identities=51% Similarity=0.752 Sum_probs=62.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCCCCCC
Q 034704 5 DSEDPKQNTADMTAFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEMGIEGSASP 71 (86)
Q Consensus 5 ~~~~~~~s~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm~qaG~e~~~~~ 71 (86)
+++..+++.+|||.+||+||||.|+|||+||++||+||||||+|||||||||+|||++||||++++.
T Consensus 6 ~a~aDpkNmq~LTs~vQ~lLQq~QDkFQtMSDQII~RiDDM~~riDDLEKnIaDLm~qagvE~~~s~ 72 (73)
T KOG4117|consen 6 DAEADPKNMQDLTSVVQGLLQQTQDKFQTMSDQIIGRIDDMSSRIDDLEKNIADLMTQAGVEELESE 72 (73)
T ss_pred cCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHccccCCCCC
Confidence 3455667999999999999999999999999999999999999999999999999999999999874
No 2
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=99.96 E-value=5.8e-30 Score=159.11 Aligned_cols=54 Identities=63% Similarity=0.968 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccC
Q 034704 13 TADMTAFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEMGIE 66 (86)
Q Consensus 13 ~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm~qaG~e 66 (86)
.+|||+||++||+|||+||++||++|++||||||+|||+|||||++||++||+|
T Consensus 1 s~elt~~v~~lL~qmq~kFq~mS~~I~~riDeM~~RIDdLE~si~dl~~qag~~ 54 (54)
T PF06825_consen 1 SQELTAFVQNLLQQMQDKFQTMSDQILGRIDEMSSRIDDLEKSIADLMTQAGVE 54 (54)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH----------
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC
Confidence 479999999999999999999999999999999999999999999999999986
No 3
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=95.01 E-value=0.21 Score=35.15 Aligned_cols=54 Identities=33% Similarity=0.538 Sum_probs=41.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHhhhHHHHHHHHHHHHHh
Q 034704 9 PKQNTADMTAFVQNLLQQMQSRFQTMSESIIAKI---------------DEMGSRIDELEQSINDLRSE 62 (86)
Q Consensus 9 ~~~s~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~Ri---------------DeMgsRIDdLEksI~dLm~q 62 (86)
.+-|.++=..||+.|++|.+..=...-..|-.|| ++.-.|||.||+.|++|=++
T Consensus 37 Geln~eEak~~vddl~~q~k~~~~e~e~K~~r~i~~ml~~~~~~r~~~~~~l~~rvd~Lerqv~~Lenk 105 (108)
T COG3937 37 GELNAEEAKRFVDDLLRQAKEAQGELEEKIPRKIEEMLSDLEVARQSEMDELTERVDALERQVADLENK 105 (108)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 3557889999999999999876555555554444 44568999999999998664
No 4
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=93.99 E-value=0.21 Score=30.39 Aligned_cols=19 Identities=26% Similarity=0.630 Sum_probs=15.8
Q ss_pred HHHHHHHHhhhHHHHHHHH
Q 034704 38 IIAKIDEMGSRIDELEQSI 56 (86)
Q Consensus 38 I~~RiDeMgsRIDdLEksI 56 (86)
+..|+|+|++||..||..+
T Consensus 28 Lt~kL~~vs~RLe~LEn~~ 46 (47)
T PF10393_consen 28 LTQKLDAVSKRLEALENRL 46 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 4456899999999999876
No 5
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=91.26 E-value=1.5 Score=32.80 Aligned_cols=46 Identities=20% Similarity=0.485 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 034704 17 TAFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSE 62 (86)
Q Consensus 17 T~~Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm~q 62 (86)
..-+.++.+.++..|.+..+++-.++|.+..||..|++.|.+-..+
T Consensus 69 e~~i~~~~~~v~~~~~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~ 114 (247)
T PF06705_consen 69 EEQINNMQERVENQISEKQEQLQSRLDSLNDRIEALEEEIQEEKEE 114 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666677888888888899999999999888876654
No 6
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=90.99 E-value=1.7 Score=30.85 Aligned_cols=48 Identities=15% Similarity=0.376 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHhhhHHHHHHHHHHHHH
Q 034704 14 ADMTAFVQNLLQQMQSRFQTMSESIIAK--------IDEMGSRIDELEQSINDLRS 61 (86)
Q Consensus 14 ~dLT~~Vq~LLqQmQ~kFqtmS~~I~~R--------iDeMgsRIDdLEksI~dLm~ 61 (86)
.+++.-+..-+..+...|..=-..++.| |+.++.|||.|++.|..|..
T Consensus 75 ~~~~~~~~~~~dklE~~fd~rV~~aL~rLgvPs~~dv~~L~~rId~L~~~v~~l~~ 130 (132)
T PF05597_consen 75 DDVKERATGQWDKLEQAFDERVARALNRLGVPSRKDVEALSARIDQLTAQVERLAN 130 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444555555566666666545556666 68999999999999998864
No 7
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=90.48 E-value=1.7 Score=35.16 Aligned_cols=41 Identities=24% Similarity=0.538 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHH--------HHHHhhhHHHHHHHHHHHHHhhc
Q 034704 24 LQQMQSRFQTMSESIIAK--------IDEMGSRIDELEQSINDLRSEMG 64 (86)
Q Consensus 24 LqQmQ~kFqtmS~~I~~R--------iDeMgsRIDdLEksI~dLm~qaG 64 (86)
+-.++-.|+.+.+.++.. ||+++.||.+||+.|..|-.+.+
T Consensus 265 ~m~lr~~~qe~~e~~L~~LnlPTRsElDe~~krL~ELrR~vr~L~k~l~ 313 (320)
T TIGR01834 265 LMRLRIQQQEIVEALLKMLNLPTRSELDEAHQRIQQLRREVKSLKKRLG 313 (320)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777788888888854 79999999999999999998765
No 8
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=90.39 E-value=2.5 Score=28.02 Aligned_cols=45 Identities=22% Similarity=0.553 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 034704 14 ADMTAFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDL 59 (86)
Q Consensus 14 ~dLT~~Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dL 59 (86)
.++++-+..-++++..++..+ ..-+.+||++-.+|..||+.+..|
T Consensus 41 ~~~~~~l~~~~~~l~~k~~~l-~~~l~~Id~Ie~~V~~LE~~v~~L 85 (99)
T PF10046_consen 41 KDIAAGLEKNLEDLNQKYEEL-QPYLQQIDQIEEQVTELEQTVYEL 85 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666677777777776 445677888888888888877665
No 9
>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein. The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....
Probab=90.10 E-value=0.43 Score=41.70 Aligned_cols=35 Identities=29% Similarity=0.495 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 034704 17 TAFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQS 55 (86)
Q Consensus 17 T~~Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEks 55 (86)
.+.+.+|..||+++|+.+|.. |.|.-+|+|.||+.
T Consensus 286 ~~aL~~L~~qL~nnF~AISss----I~dIy~RLd~leAd 320 (610)
T PF01601_consen 286 GQALNQLTSQLSNNFGAISSS----IQDIYNRLDQLEAD 320 (610)
T ss_dssp HHHHHHHHHHHHHHCCHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhHHH----HHHHHHHHHHHhhc
Confidence 467888999999999997766 56889999999975
No 10
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=88.92 E-value=7.5 Score=28.60 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=20.5
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhhccCC
Q 034704 41 KIDEMGSRIDELEQSINDLRSEMGIEG 67 (86)
Q Consensus 41 RiDeMgsRIDdLEksI~dLm~qaG~e~ 67 (86)
-|+||-++|-.||..|+. +.+.-...
T Consensus 126 e~ee~~~~l~~le~~~~~-~e~~~~~~ 151 (175)
T PRK13182 126 EMEEMLERLQKLEARLKK-LEPIYITP 151 (175)
T ss_pred HHHHHHHHHHHHHHHHHH-HHhhccCC
Confidence 499999999999999999 44444333
No 11
>PF14261 DUF4351: Domain of unknown function (DUF4351)
Probab=87.47 E-value=0.64 Score=28.75 Aligned_cols=40 Identities=20% Similarity=0.386 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 034704 19 FVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLR 60 (86)
Q Consensus 19 ~Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm 60 (86)
...-++.+++-||-.++..+..||...+ ++.||.=...+.
T Consensus 8 ~~~lllRlL~rrFG~lp~~~~~~I~~l~--~eqLE~l~e~il 47 (59)
T PF14261_consen 8 EARLLLRLLTRRFGELPPEIQERIQQLS--LEQLEALAEAIL 47 (59)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHcCC--HHHHHHHHHHHh
Confidence 3566889999999999999999999997 788887555444
No 12
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=86.24 E-value=2.9 Score=26.21 Aligned_cols=36 Identities=14% Similarity=0.473 Sum_probs=26.3
Q ss_pred HHHHHHHHHH---HHHHHHHHHHhhhHHHHHHHHHHHHH
Q 034704 26 QMQSRFQTMS---ESIIAKIDEMGSRIDELEQSINDLRS 61 (86)
Q Consensus 26 QmQ~kFqtmS---~~I~~RiDeMgsRIDdLEksI~dLm~ 61 (86)
.+.+++..++ ..+-.-+.+++..|+.|+++|.+||.
T Consensus 4 elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~ 42 (55)
T PF05377_consen 4 ELENELPRIESSINTVKKENEEISESVEKIEENVKDLLS 42 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444333 44456689999999999999999985
No 13
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=85.90 E-value=1.7 Score=31.22 Aligned_cols=40 Identities=20% Similarity=0.441 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhHHHHHHHHHH
Q 034704 19 FVQNLLQQMQSRFQTMSESIIAK-IDEMGSRIDELEQSIND 58 (86)
Q Consensus 19 ~Vq~LLqQmQ~kFqtmS~~I~~R-iDeMgsRIDdLEksI~d 58 (86)
.+..+|..|+.-+......+-.| ++|+.+||+-|+..++.
T Consensus 43 ~i~~~~~~L~~v~~~~~~~~~kr~~~D~~KRL~iLfd~ln~ 83 (157)
T PF07304_consen 43 PIEEVLRELQRVLEACPPSIKKRVVDDIEKRLNILFDHLNN 83 (157)
T ss_dssp -HHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcccccchhHHHHHHHHHHHHHHHHhc
Confidence 44455556666666666677777 49999999999988763
No 14
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=84.36 E-value=6.9 Score=26.82 Aligned_cols=19 Identities=26% Similarity=0.705 Sum_probs=15.8
Q ss_pred HHHHhhhHHHHHHHHHHHH
Q 034704 42 IDEMGSRIDELEQSINDLR 60 (86)
Q Consensus 42 iDeMgsRIDdLEksI~dLm 60 (86)
|+.+..|||.||+.|..|-
T Consensus 98 v~~L~~RI~~Le~~l~~l~ 116 (118)
T TIGR01837 98 IEALSAKIEQLAVQVEELR 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 5788889999999988874
No 15
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=84.27 E-value=2 Score=29.94 Aligned_cols=21 Identities=19% Similarity=0.480 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHhhhHHHHH
Q 034704 33 TMSESIIAKIDEMGSRIDELE 53 (86)
Q Consensus 33 tmS~~I~~RiDeMgsRIDdLE 53 (86)
..-+.|..+|..|+.|||.||
T Consensus 81 ktL~~I~~~L~~inkRLD~~E 101 (102)
T PF01519_consen 81 KTLQLILKTLQSINKRLDKME 101 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhhcc
Confidence 344778899999999999987
No 16
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=83.98 E-value=7.5 Score=27.52 Aligned_cols=48 Identities=23% Similarity=0.434 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 034704 14 ADMTAFVQNLLQQMQ---SRFQTMSESIIAKIDEMGSRIDELEQSINDLRSE 62 (86)
Q Consensus 14 ~dLT~~Vq~LLqQmQ---~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm~q 62 (86)
.++-..+..++++|. .+|..... .+.||++|+..|..+-..+.+++.-
T Consensus 59 Kevd~~~~~l~~~~~erqk~~~k~ae-~L~kv~els~~L~~~~~lL~~~v~~ 109 (131)
T PF10158_consen 59 KEVDQEIAKLLQQMVERQKRFAKFAE-QLEKVNELSQQLSRCQSLLNQTVPS 109 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555554 44444444 6778999998888888877776653
No 17
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=83.62 E-value=2.8 Score=26.19 Aligned_cols=31 Identities=29% Similarity=0.439 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 034704 25 QQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDL 59 (86)
Q Consensus 25 qQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dL 59 (86)
+.++.|+.. |=.|+|+...|++.||++.+.+
T Consensus 2 ~~i~e~l~~----ie~~l~~~~~~i~~lE~~~~~~ 32 (71)
T PF10779_consen 2 QDIKEKLNR----IETKLDNHEERIDKLEKRDAAN 32 (71)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 445555544 5677888888888888776544
No 18
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=83.04 E-value=9.6 Score=27.06 Aligned_cols=50 Identities=18% Similarity=0.383 Sum_probs=34.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 034704 11 QNTADMTAFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLR 60 (86)
Q Consensus 11 ~s~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm 60 (86)
.+..+-.+.|-.-|+|+.+.....=..+..|||-+..+||+..+-...+.
T Consensus 39 r~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~ 88 (126)
T PF07889_consen 39 RSMSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIK 88 (126)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34555556666667777777777777888888888888887665444433
No 19
>PF04513 Baculo_PEP_C: Baculovirus polyhedron envelope protein, PEP, C terminus ; InterPro: IPR007601 Polyhedra are large crystalline occlusion bodies containing nucleopolyhedrovirus virions, and surrounded by an electron-dense structure called the polyhedron envelope or polyhedron calyx. The polyhedron envelope (associated) protein PEP is thought to be an integral part of the polyhedron envelope. PEP is concentrated at the surface of polyhedra, and is thought to be important for the proper formation of the periphery of polyhedra. It is thought that PEP may stabilise polyhedra and protect them from fusion or aggregation [].; GO: 0005198 structural molecule activity, 0019028 viral capsid, 0019031 viral envelope
Probab=82.16 E-value=11 Score=27.42 Aligned_cols=44 Identities=20% Similarity=0.447 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 034704 18 AFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRS 61 (86)
Q Consensus 18 ~~Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm~ 61 (86)
+.+.+++.-++.++..++..|-..+.++..|++.|..++.+-+.
T Consensus 34 aql~~~~d~i~~~L~~l~~~l~~ll~~l~~~l~~l~~~L~~aln 77 (140)
T PF04513_consen 34 AQLTTILDAIQTQLNALSTDLTNLLADLDTRLDTLLTNLNDALN 77 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555666666655556666666666555555443
No 20
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=81.72 E-value=13 Score=32.38 Aligned_cols=54 Identities=31% Similarity=0.444 Sum_probs=40.3
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHH---HHHHHHhhhHHHHHHHHHHHHHhhccCCCCC
Q 034704 17 TAFVQNLL---QQMQSRFQTMSESII---AKIDEMGSRIDELEQSINDLRSEMGIEGSAS 70 (86)
Q Consensus 17 T~~Vq~LL---qQmQ~kFqtmS~~I~---~RiDeMgsRIDdLEksI~dLm~qaG~e~~~~ 70 (86)
-.|++.|- ..++.|++.||.++- ...+..-+||-+||.+|.+|-++.....++.
T Consensus 14 d~ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~ 73 (617)
T PF15070_consen 14 DQYAQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPE 73 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcc
Confidence 34555543 346889999999876 3457888999999999999988877655443
No 21
>PF04344 CheZ: Chemotaxis phosphatase, CheZ; InterPro: IPR007439 This family represents the bacterial chemotaxis phosphatase, CheZ. This protein forms a dimer characterised by a long four-helix bundle, composed of two helices from each monomer. CheZ dephosphorylates CheY in a reaction that is essential to maintain a continuous chemotactic response to environmental changes. It is thought that CheZ's conserved residue Gln 147 orientates a water molecule for nucleophilic attack at the CheY active site. ; GO: 0003824 catalytic activity, 0050920 regulation of chemotaxis, 0009288 bacterial-type flagellum; PDB: 1KMI_Z 2FMK_B 2PMC_F.
Probab=81.17 E-value=3.5 Score=30.85 Aligned_cols=37 Identities=27% Similarity=0.430 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCCCCC
Q 034704 31 FQTMSESIIAKIDEMGSRIDELEQSINDLRSEMGIEGSAS 70 (86)
Q Consensus 31 FqtmS~~I~~RiDeMgsRIDdLEksI~dLm~qaG~e~~~~ 70 (86)
||.+..|+|.|+=.+ |.++|++|..|+...|......
T Consensus 129 FQDLTGQ~IkKVv~~---l~~vE~~L~~ll~~~g~~~~~~ 165 (214)
T PF04344_consen 129 FQDLTGQRIKKVVNL---LQEVEERLVQLLVIFGPEEEAA 165 (214)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHTTTTTT----------
T ss_pred hhHHHHHHHHHHHHH---HHHHHHHHHHHHHHhCcccccc
Confidence 999999999998665 7799999999999999876664
No 22
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=79.04 E-value=19 Score=30.82 Aligned_cols=40 Identities=20% Similarity=0.321 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHhhhHHHHHHHHHHHHHhh
Q 034704 24 LQQMQSRFQTMSESII---AKIDEMGSRIDELEQSINDLRSEM 63 (86)
Q Consensus 24 LqQmQ~kFqtmS~~I~---~RiDeMgsRIDdLEksI~dLm~qa 63 (86)
+.+++.+|..+-.+.= .+..++.+||++||..+..|-.|.
T Consensus 78 asELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 78 AAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3344455555543332 556778889999999999998886
No 23
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=77.20 E-value=11 Score=24.85 Aligned_cols=40 Identities=20% Similarity=0.426 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 034704 19 FVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDL 59 (86)
Q Consensus 19 ~Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dL 59 (86)
-++..|..+..+|..+...|-.|++-...+ ++||..|..|
T Consensus 5 ~le~al~rL~~aid~LE~~v~~r~~~~~~~-~~~e~ei~~l 44 (89)
T PF13747_consen 5 SLEAALTRLEAAIDRLEKAVDRRLERDRKR-DELEEEIQRL 44 (89)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhHHHHHHHH
Confidence 456677788888888888888888877766 7888777554
No 24
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=76.83 E-value=12 Score=27.83 Aligned_cols=47 Identities=26% Similarity=0.465 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhc
Q 034704 15 DMTAFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEMG 64 (86)
Q Consensus 15 dLT~~Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm~qaG 64 (86)
.|...++.-++.|+++++ ..+..|.+.+..++|.|...|..|-....
T Consensus 63 ~lq~~~e~~i~~~~~~v~---~~~~~~~~~~~~~l~~L~~ri~~L~~~i~ 109 (247)
T PF06705_consen 63 KLQSKFEEQINNMQERVE---NQISEKQEQLQSRLDSLNDRIEALEEEIQ 109 (247)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555554 45677888888999999998888876544
No 25
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=76.53 E-value=3.5 Score=21.92 Aligned_cols=18 Identities=22% Similarity=0.628 Sum_probs=14.8
Q ss_pred HHHHhhhHHHHHHHHHHH
Q 034704 42 IDEMGSRIDELEQSINDL 59 (86)
Q Consensus 42 iDeMgsRIDdLEksI~dL 59 (86)
|+..-+||-|||+.+++-
T Consensus 3 ~~rlr~rI~dLer~L~~C 20 (23)
T PF04508_consen 3 MNRLRNRISDLERQLSEC 20 (23)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566778999999999874
No 26
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=76.21 E-value=9.8 Score=23.61 Aligned_cols=37 Identities=30% Similarity=0.443 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 034704 25 QQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRS 61 (86)
Q Consensus 25 qQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm~ 61 (86)
.-+++=++.|.+.+-+-=+.+-+|||+.-+.|.+|=+
T Consensus 6 ~~v~~lL~qmq~kFq~mS~~I~~riDeM~~RIDdLE~ 42 (54)
T PF06825_consen 6 AFVQNLLQQMQDKFQTMSDQILGRIDEMSSRIDDLEK 42 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3344445555555444445556777888877777633
No 27
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=75.36 E-value=18 Score=25.57 Aligned_cols=47 Identities=23% Similarity=0.328 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhc
Q 034704 18 AFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEMG 64 (86)
Q Consensus 18 ~~Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm~qaG 64 (86)
.-|-+|-..+|++|..-++.|...=....+||.+.|..++-++++.+
T Consensus 27 ~~~l~Lc~R~Q~HL~~cA~~Va~~Q~~L~~riKevd~~~~~l~~~~~ 73 (131)
T PF10158_consen 27 RPVLRLCSRYQEHLNQCAEAVAFDQNALAKRIKEVDQEIAKLLQQMV 73 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667888999999999999999999999999999999999988764
No 28
>KOG4117 consensus Heat shock factor binding protein [Transcription; Posttranslational modification, protein turnover, chaperones]
Probab=75.14 E-value=16 Score=24.25 Aligned_cols=40 Identities=18% Similarity=0.310 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 034704 14 ADMTAFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELE 53 (86)
Q Consensus 14 ~dLT~~Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLE 53 (86)
+-|-.-+|.-+|.|.+..=+=-+.+-+||||+-+-|.||=
T Consensus 22 Q~lLQq~QDkFQtMSDQII~RiDDM~~riDDLEKnIaDLm 61 (73)
T KOG4117|consen 22 QGLLQQTQDKFQTMSDQIIGRIDDMSSRIDDLEKNIADLM 61 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence 3444455555555555554444555566666666666653
No 29
>PHA03332 membrane glycoprotein; Provisional
Probab=74.51 E-value=11 Score=35.84 Aligned_cols=48 Identities=17% Similarity=0.287 Sum_probs=34.4
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 034704 14 ADMTAFVQNL---LQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRS 61 (86)
Q Consensus 14 ~dLT~~Vq~L---LqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm~ 61 (86)
.++.+.|+.+ ..+|-++...+|..+-.+||+...||++||.+|+.=+-
T Consensus 901 g~tNaAV~~lsDai~klGnti~kisatl~~nI~avNgRIs~Led~VN~r~~ 951 (1328)
T PHA03332 901 GGLNARVDKTSDVITKLGDTIAKISATLDNNIRAVNGRVSDLEDQVNLRFL 951 (1328)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHhcccHHHHHHHHHHHHH
Confidence 3444444444 33666677777777788999999999999998876543
No 30
>PF09712 PHA_synth_III_E: Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E)
Probab=74.46 E-value=19 Score=28.18 Aligned_cols=36 Identities=22% Similarity=0.459 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHH--------HHHHhhhHHHHHHHHHHHH
Q 034704 25 QQMQSRFQTMSESIIAK--------IDEMGSRIDELEQSINDLR 60 (86)
Q Consensus 25 qQmQ~kFqtmS~~I~~R--------iDeMgsRIDdLEksI~dLm 60 (86)
-.++.+++.+.+.++.- ||++.+||.+|++.+..|.
T Consensus 249 m~~r~~~~~~~e~~L~~l~lPTr~evd~l~k~l~eLrre~r~Lk 292 (293)
T PF09712_consen 249 MDLRKQQQEVVEEYLRSLNLPTRSEVDELYKRLHELRREVRALK 292 (293)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 34677788888888754 8999999999999998773
No 31
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=74.26 E-value=20 Score=22.99 Aligned_cols=19 Identities=16% Similarity=0.384 Sum_probs=14.2
Q ss_pred HHHhhhHHHHHHHHHHHHH
Q 034704 43 DEMGSRIDELEQSINDLRS 61 (86)
Q Consensus 43 DeMgsRIDdLEksI~dLm~ 61 (86)
...-.||+.||+.|++|-.
T Consensus 60 ~~~r~kl~~LEarl~~LE~ 78 (79)
T PF04380_consen 60 ARTREKLEALEARLAALEA 78 (79)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4456788999999888743
No 32
>PF09903 DUF2130: Uncharacterized protein conserved in bacteria (DUF2130); InterPro: IPR019219 This entry, found in various hypothetical bacterial proteins, has no known function.
Probab=73.55 E-value=22 Score=27.67 Aligned_cols=40 Identities=18% Similarity=0.364 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 034704 21 QNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLR 60 (86)
Q Consensus 21 q~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm 60 (86)
.+.++-.-.+|..|+..+..-++.|-+.+..||+.+..|+
T Consensus 197 ~~~~~~~~~~~~~~~~~l~ke~~~i~k~~~k~ek~~e~l~ 236 (267)
T PF09903_consen 197 RQFIEAIVENFEDMSKDLDKEIKAIDKAWKKREKQIEKLL 236 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556677899999999999999999999999999998
No 33
>PF04513 Baculo_PEP_C: Baculovirus polyhedron envelope protein, PEP, C terminus ; InterPro: IPR007601 Polyhedra are large crystalline occlusion bodies containing nucleopolyhedrovirus virions, and surrounded by an electron-dense structure called the polyhedron envelope or polyhedron calyx. The polyhedron envelope (associated) protein PEP is thought to be an integral part of the polyhedron envelope. PEP is concentrated at the surface of polyhedra, and is thought to be important for the proper formation of the periphery of polyhedra. It is thought that PEP may stabilise polyhedra and protect them from fusion or aggregation [].; GO: 0005198 structural molecule activity, 0019028 viral capsid, 0019031 viral envelope
Probab=72.60 E-value=32 Score=25.01 Aligned_cols=48 Identities=21% Similarity=0.439 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhHHHHHHHHHHHHHh
Q 034704 15 DMTAFVQNLLQQMQSRFQTMSESIIAKI----DEMGSRIDELEQSINDLRSE 62 (86)
Q Consensus 15 dLT~~Vq~LLqQmQ~kFqtmS~~I~~Ri----DeMgsRIDdLEksI~dLm~q 62 (86)
++..-+..|+-.+..||.+....+..+| |.+-.+|+.|..-++.|-..
T Consensus 49 ~l~~~l~~ll~~l~~~l~~l~~~L~~aln~Lq~~~rneLtnlnsil~nL~ss 100 (140)
T PF04513_consen 49 ALSTDLTNLLADLDTRLDTLLTNLNDALNQLQDTLRNELTNLNSILNNLTSS 100 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566677778888888888888888 66668888888888887654
No 34
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=70.61 E-value=12 Score=24.65 Aligned_cols=44 Identities=14% Similarity=0.398 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhc
Q 034704 20 VQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEMG 64 (86)
Q Consensus 20 Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm~qaG 64 (86)
+|+-+.+++.++..+ ..|-.|||-++.|++.|+..++++-.=..
T Consensus 23 Lq~~V~~l~~~~~~v-~~l~~klDa~~~~l~~l~~~V~~I~~iL~ 66 (75)
T PF05531_consen 23 LQTQVDDLESNLPDV-TELNKKLDAQSAQLTTLNTKVNEIQDILN 66 (75)
T ss_pred HHHHHHHHHhcCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344445555555433 24778899999999999987777655444
No 35
>PF04546 Sigma70_ner: Sigma-70, non-essential region; InterPro: IPR007631 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This domain is found in the primary vegetative sigma factor. Its function is unclear, and it can be removed without apparent loss of function [, ].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1SIG_A 3IYD_F.
Probab=70.42 E-value=4.3 Score=29.69 Aligned_cols=48 Identities=21% Similarity=0.355 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHH------HHHHHHHHHHHHHhhhHHHHHHHHHHHH-HhhccC
Q 034704 19 FVQNLLQQMQSRFQ------TMSESIIAKIDEMGSRIDELEQSINDLR-SEMGIE 66 (86)
Q Consensus 19 ~Vq~LLqQmQ~kFq------tmS~~I~~RiDeMgsRIDdLEksI~dLm-~qaG~e 66 (86)
-.+.++++|..-|. ..-+.|+..|-.+-.||..+|+.|-.|. .++|+.
T Consensus 107 ~~~~~~~~l~~~~~~ikl~~k~id~L~~~lr~~~~~Ir~~Er~i~~l~v~~~gmp 161 (211)
T PF04546_consen 107 KYQKLREELAEEFMEIKLSPKQIDRLVEQLREIVERIRQQERRIMRLCVRRAGMP 161 (211)
T ss_dssp HHHHHHHHHHHHHTTCEE-HHHHHHHCHHHHCCCHHHHHHHHHHHHCCCTTTT--
T ss_pred HHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 46778888888886 4567778888999999999999999998 888864
No 36
>KOG4559 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.33 E-value=29 Score=24.80 Aligned_cols=44 Identities=25% Similarity=0.570 Sum_probs=32.4
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 034704 15 DMTAFVQNL---LQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDL 59 (86)
Q Consensus 15 dLT~~Vq~L---LqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dL 59 (86)
||..+.++| |..+.-||+.+.. .+..||+|+.-.|.||..-.-|
T Consensus 69 DMk~iAEkla~k~deLn~KfenL~P-~lqQIDaiddst~kLEaAa~~L 115 (120)
T KOG4559|consen 69 DMKQIAEKLAGKLDELNLKFENLAP-MLQQIDAIDDSTDKLEAAAAKL 115 (120)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHH
Confidence 444555544 7888889998765 5678999999999999865544
No 37
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=69.99 E-value=5.1 Score=32.19 Aligned_cols=24 Identities=42% Similarity=0.728 Sum_probs=15.0
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHH
Q 034704 37 SIIAKIDEMGSRIDELEQSINDLR 60 (86)
Q Consensus 37 ~I~~RiDeMgsRIDdLEksI~dLm 60 (86)
.|-.||+++..||.+||..|.++-
T Consensus 141 ~l~~Ri~e~Eeris~lEd~~~~i~ 164 (370)
T PF02994_consen 141 SLNSRIDELEERISELEDRIEEIE 164 (370)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHh
Confidence 455777777777777777776543
No 38
>PRK11166 chemotaxis regulator CheZ; Provisional
Probab=69.96 E-value=45 Score=25.60 Aligned_cols=33 Identities=24% Similarity=0.359 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccC
Q 034704 31 FQTMSESIIAKIDEMGSRIDELEQSINDLRSEMGIE 66 (86)
Q Consensus 31 FqtmS~~I~~RiDeMgsRIDdLEksI~dLm~qaG~e 66 (86)
||.+..|+|.|+=.+ |.++|+++..|+...+.+
T Consensus 141 FQDLTGQvI~kVi~~---v~~vE~~L~~ll~~~~~~ 173 (214)
T PRK11166 141 FQDLTGQVIKRMMDV---IQEIERQLLMVLLENIPE 173 (214)
T ss_pred chHhHhHHHHHHHHH---HHHHHHHHHHHHHHhCcc
Confidence 999999999998766 668999999999887753
No 39
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=69.54 E-value=23 Score=30.60 Aligned_cols=50 Identities=20% Similarity=0.379 Sum_probs=36.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HH-----------HHHHhhhHHHHHHHHHHHHH
Q 034704 12 NTADMTAFVQNLLQQMQSRFQTMSESII-----------------AK-----------IDEMGSRIDELEQSINDLRS 61 (86)
Q Consensus 12 s~~dLT~~Vq~LLqQmQ~kFqtmS~~I~-----------------~R-----------iDeMgsRIDdLEksI~dLm~ 61 (86)
...-....|+..|+|+|+||.....+.- ++ +..+-..|.||+..|.|||-
T Consensus 372 ~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf 449 (493)
T KOG0804|consen 372 DLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDLMF 449 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhe
Confidence 3444567888999999999987776543 12 34455668899999999984
No 40
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=68.82 E-value=10 Score=25.57 Aligned_cols=28 Identities=21% Similarity=0.395 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 034704 34 MSESIIAKIDEMGSRIDELEQSINDLRS 61 (86)
Q Consensus 34 mS~~I~~RiDeMgsRIDdLEksI~dLm~ 61 (86)
+-++|-+.||-+-.|-|.|...+..|+.
T Consensus 34 ~LD~Lns~LD~LE~rnD~l~~~L~~LLe 61 (83)
T PF03670_consen 34 MLDQLNSCLDHLEQRNDHLHAQLQELLE 61 (83)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3344445555555555555555555543
No 41
>TIGR02135 phoU_full phosphate transport system regulatory protein PhoU. This model describes PhoU, a regulatory protein of unknown mechanism for high-affinity phosphate ABC transporter systems. The protein consists of two copies of the domain described by Pfam model pfam01895. Deletion of PhoU activates constitutive expression of the phosphate ABC transporter and allows phosphate transport, but causes a growth defect and so likely has some second function.
Probab=68.78 E-value=34 Score=23.25 Aligned_cols=50 Identities=20% Similarity=0.294 Sum_probs=37.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 034704 12 NTADMTAFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRS 61 (86)
Q Consensus 12 s~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm~ 61 (86)
....|...|...|.....=|.+-......++.++..+||.|++.|..-..
T Consensus 117 el~~m~~~v~~~l~~a~~al~~~d~~~~~~i~~~e~~id~l~~~i~~~~~ 166 (212)
T TIGR02135 117 ELEKMGKLALKMLKDALDAFLNKDAELARQVAEMDERVDELYRQIFRELV 166 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666667766777777778888999999999999988766544
No 42
>PRK10884 SH3 domain-containing protein; Provisional
Probab=68.14 E-value=49 Score=24.89 Aligned_cols=51 Identities=14% Similarity=0.303 Sum_probs=35.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 034704 12 NTADMTAFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSE 62 (86)
Q Consensus 12 s~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm~q 62 (86)
+..+.-.-++.=|..++.+...+-.+.-.+..+|..+++++++.|.+|.++
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~ 140 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEE 140 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666777777777777777777777777777777777666666544
No 43
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=67.32 E-value=28 Score=29.98 Aligned_cols=63 Identities=21% Similarity=0.285 Sum_probs=47.4
Q ss_pred CCCCCCCHHHHHHHHHHHH-HHHHHHHH---HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCCC
Q 034704 6 SEDPKQNTADMTAFVQNLL-QQMQSRFQ---TMSESIIAKIDEMGSRIDELEQSINDLRSEMGIEGS 68 (86)
Q Consensus 6 ~~~~~~s~~dLT~~Vq~LL-qQmQ~kFq---tmS~~I~~RiDeMgsRIDdLEksI~dLm~qaG~e~~ 68 (86)
+.+|.....=+.++++..+ +++..|++ .....|-.|+.+...+++..|+.+.+..++.|+-.+
T Consensus 236 ~~dP~~Aa~ilN~la~~Yi~~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~ 302 (726)
T PRK09841 236 GDDPQLITRILNSIANNYLQQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDL 302 (726)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 3445545555566666666 56777765 456778899999999999999999999999887543
No 44
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=66.62 E-value=31 Score=24.55 Aligned_cols=26 Identities=31% Similarity=0.576 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHH
Q 034704 36 ESIIAKIDEMGSRIDELEQSINDLRS 61 (86)
Q Consensus 36 ~~I~~RiDeMgsRIDdLEksI~dLm~ 61 (86)
..+-.||||+-.|+-.||.++..|-.
T Consensus 36 a~mhrRlDElV~Rv~~lEs~~~~lk~ 61 (112)
T PF07439_consen 36 ASMHRRLDELVERVTTLESSVSTLKA 61 (112)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence 45778999999999999998887754
No 45
>PF12841 YvrJ: YvrJ protein family; InterPro: IPR024419 This entry is represents a family of uncharacterised protein. The function of the Bacillus subtilis YvrJ protein is not known, but its expression is regulated by the cell envelope stress-inducible sigma factor YvrI [].
Probab=66.11 E-value=7.3 Score=22.60 Aligned_cols=17 Identities=41% Similarity=0.743 Sum_probs=12.9
Q ss_pred HhhhHHHHHHHHHHHHH
Q 034704 45 MGSRIDELEQSINDLRS 61 (86)
Q Consensus 45 MgsRIDdLEksI~dLm~ 61 (86)
|-+|||+|.++|.+|..
T Consensus 20 ~E~kld~L~~~i~~L~~ 36 (38)
T PF12841_consen 20 IEKKLDELTESINELSE 36 (38)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 45788888888888765
No 46
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=65.98 E-value=38 Score=24.04 Aligned_cols=44 Identities=20% Similarity=0.424 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 034704 15 DMTAFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSE 62 (86)
Q Consensus 15 dLT~~Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm~q 62 (86)
-|+.+|..+=.|| +.+|+.|-.-=..++.|||.|..++.+.+.-
T Consensus 40 ~m~~A~~~v~kql----~~vs~~l~~tKkhLsqRId~vd~klDe~~ei 83 (126)
T PF07889_consen 40 SMSDAVASVSKQL----EQVSESLSSTKKHLSQRIDRVDDKLDEQKEI 83 (126)
T ss_pred hHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4556666655555 5677777777789999999999999887653
No 47
>PRK06771 hypothetical protein; Provisional
Probab=65.32 E-value=17 Score=24.99 Aligned_cols=26 Identities=23% Similarity=0.452 Sum_probs=23.0
Q ss_pred HhhhHHHHHHHHHHHHHhhccCCCCC
Q 034704 45 MGSRIDELEQSINDLRSEMGIEGSAS 70 (86)
Q Consensus 45 MgsRIDdLEksI~dLm~qaG~e~~~~ 70 (86)
|-+|+..+|.+++-++.+.|+.++..
T Consensus 28 ~~~~~k~ie~~L~~I~~~~Gi~~~~~ 53 (93)
T PRK06771 28 TDARLKRMEDRLQLITKEMGIVDREP 53 (93)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 44599999999999999999999873
No 48
>PF00103 Hormone_1: Somatotropin hormone family; InterPro: IPR001400 Somatotropin is a hormone that plays an important role in growth control. It belongs to a family that includes choriomammotropin (lactogen), its placental analogue; prolactin, which promotes lactation in the mammary gland, and placental prolactin-related proteins; proliferin and proliferin related protein; and somatolactin from various fish [, , , ]. The 3D structure of bovine somatotropin has been predicted using a combination of heuristics and energy minimisation [].; GO: 0005179 hormone activity, 0005576 extracellular region; PDB: 3HHR_A 1HUW_A 1KF9_D 1HGU_A 1HWG_A 1AXI_A 1A22_A 1BP3_A 1HWH_A 1F6F_A ....
Probab=64.77 E-value=16 Score=27.09 Aligned_cols=54 Identities=24% Similarity=0.412 Sum_probs=41.7
Q ss_pred CHHHHHHHHHHHHH-------HHHHH---HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcc
Q 034704 12 NTADMTAFVQNLLQ-------QMQSR---FQTMSESIIAKIDEMGSRIDELEQSINDLRSEMGI 65 (86)
Q Consensus 12 s~~dLT~~Vq~LLq-------QmQ~k---FqtmS~~I~~RiDeMgsRIDdLEksI~dLm~qaG~ 65 (86)
+..+|-.++-.||+ .+..- ....++.|+.|.-++..++.+|++-|..++.+.+.
T Consensus 89 s~~~LL~~~l~Ll~sW~~PL~~L~~~l~~~~~~~~~ilsk~~~i~~k~~~L~egi~~i~~~~~~ 152 (214)
T PF00103_consen 89 SDEDLLKLSLSLLQSWNEPLQHLVTELSSLPEAPDAILSKAKEIEEKIKELLEGIKKILSKMQD 152 (214)
T ss_dssp -HHHHHHHHHHHHHCTCCHHHHHHHHHHCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred cHHHHHHHHHHHHHHHHhHHHHHHHHHhccCCCcHHHhchHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45677777777755 34332 22347899999999999999999999999999983
No 49
>PRK04406 hypothetical protein; Provisional
Probab=64.27 E-value=6.8 Score=25.29 Aligned_cols=15 Identities=7% Similarity=0.319 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHhh
Q 034704 49 IDELEQSINDLRSEM 63 (86)
Q Consensus 49 IDdLEksI~dLm~qa 63 (86)
||.|++.+.-|..+.
T Consensus 41 I~~L~~ql~~L~~rl 55 (75)
T PRK04406 41 ITKMQDQMKYVVGKV 55 (75)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555555554433
No 50
>PF11101 DUF2884: Protein of unknown function (DUF2884); InterPro: IPR021307 Some members in this bacterial family of proteins are annotated as YggN which currently has no known function.
Probab=64.13 E-value=32 Score=25.88 Aligned_cols=43 Identities=14% Similarity=0.295 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 034704 13 TADMTAFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQS 55 (86)
Q Consensus 13 ~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEks 55 (86)
.++|..-+.+|=+++..+++.=+..+=.|=++++.|+..|++-
T Consensus 169 l~~~~~~m~~l~~~ie~~~~~q~~~le~~a~~lC~~l~~L~~~ 211 (229)
T PF11101_consen 169 LQAFEQRMEGLQQQIEQEMEAQAQELEQKAQALCDSLQQLDQQ 211 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444443
No 51
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=63.99 E-value=60 Score=25.47 Aligned_cols=40 Identities=15% Similarity=0.233 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCCCCC
Q 034704 31 FQTMSESIIAKIDEMGSRIDELEQSINDLRSEMGIEGSAS 70 (86)
Q Consensus 31 FqtmS~~I~~RiDeMgsRIDdLEksI~dLm~qaG~e~~~~ 70 (86)
-......+-.++.+...++...|+.+.+...+.|+-.+..
T Consensus 169 ~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~~ 208 (444)
T TIGR03017 169 AQKAALWFVQQIAALREDLARAQSKLSAYQQEKGIVSSDE 208 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCc
Confidence 3466788889999999999999999999999999986543
No 52
>PF00509 Hemagglutinin: Haemagglutinin; InterPro: IPR001364 Haemagglutinin (HA) is one of two main surface fusion glycoproteins embedded in the envelope of influenza viruses, the other being neuraminidase (NA). There are sixteen known HA subtypes (H1-H16) and nine NA subtypes (N1-N9), which together are used to classify influenza viruses (e.g. H5N1). The antigenic variations in HA and NA enable the virus to evade host antibodies made to previous influenza strains, accounting for recurrent influenza epidemics []. The HA glycoprotein is present in the viral membrane as a single polypeptide (HA0), which must be cleaved by the host's trypsin-like proteases to produce two peptides (HA1 and HA2) in order for the virus to be infectious. Once HA0 is cleaved, the newly exposed N-terminal of the HA2 peptide then acts to fuse the viral envelope to the cellular membrane of the host cell, which allows the viral negative-stranded RNA to infect the host cell. The type of host protease can influence the infectivity and pathogenicity of the virus. The haemagglutinin glycoprotein is a trimer containing three structurally distinct regions: a globular head consisting of anti-parallel beta-sheets that form a beta-sandwich with a jelly-roll fold (contains the receptor binding site and the HA1/HA2 cleavage site); a triple-stranded, coiled-coil, alpha-helical stalk; and a globular foot composed of anti-parallel beta-sheets [, ]. Each monomer consists of an intact HA0 polypeptide with the HA1 and HA2 regions linked by disulphide bonds. The N terminus of HA1 provides the central strand in the 5-stranded globular foot, while the rest of the HA1 chain makes its way to the 8-stranded globular head. HA2 provides two alpha helices, which form part of the triple-stranded coiled-coil that stabilises the trimer, its C terminus providing the remaining strands of the 5-stranded globular foot. This entry represents the entire haemagglutinin protein (HA0) consisting of both the HA1 and HA2 regions, as found in influenza A and B viruses.; GO: 0046789 host cell surface receptor binding, 0019064 viral envelope fusion with host membrane, 0019031 viral envelope; PDB: 2WR5_A 2IBX_A 2WR0_B 2WR1_C 2XN9_F 2WRF_I 3S11_E 3BT6_A 3SM5_E 2FK0_H ....
Probab=63.60 E-value=0.75 Score=39.82 Aligned_cols=45 Identities=27% Similarity=0.513 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 034704 13 TADMTAFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRS 61 (86)
Q Consensus 13 ~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm~ 61 (86)
..+||.-|++|.+.|-.+|+. |-.++++.-+||++||+.+.|...
T Consensus 373 id~it~kvN~iiek~n~~fe~----i~~ef~~ve~Ri~~l~~~v~d~~~ 417 (550)
T PF00509_consen 373 IDQITKKVNSIIEKMNKQFEQ----IDKEFNEVEKRIDNLEKKVDDKIA 417 (550)
T ss_dssp HHHHHHHHHHHHHTTTCEEEE----CSCSSSTTGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccchhh----HHHHHHHHHHHHHHHHHhhhccch
Confidence 345666666666666666654 334567788888888888877665
No 53
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=63.11 E-value=49 Score=26.51 Aligned_cols=45 Identities=18% Similarity=0.383 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhhhHHHHHHHHHHHH
Q 034704 16 MTAFVQNLLQQMQSRFQTMSESI-----IAKIDEMGSRIDELEQSINDLR 60 (86)
Q Consensus 16 LT~~Vq~LLqQmQ~kFqtmS~~I-----~~RiDeMgsRIDdLEksI~dLm 60 (86)
|...++..|++-+.+|+.+...+ ..+|.....|++.|++.+.-.+
T Consensus 321 L~~a~~~~L~~~~~~L~~l~~rL~~lsP~~~L~r~~qrL~~L~~rL~~a~ 370 (438)
T PRK00286 321 LQRALERRLRLAKQRLERLSQRLQQQNPQRRIERAQQRLEQLEQRLRRAM 370 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555665555544 3446666677777776655444
No 54
>PRK14127 cell division protein GpsB; Provisional
Probab=61.83 E-value=51 Score=22.87 Aligned_cols=43 Identities=14% Similarity=0.415 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccC
Q 034704 20 VQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEMGIE 66 (86)
Q Consensus 20 Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm~qaG~e 66 (86)
|+..|+++-.-++.+ ...+.++-.++..|++.|.++-.+....
T Consensus 28 VD~FLd~V~~dye~l----~~e~~~Lk~e~~~l~~~l~e~~~~~~~~ 70 (109)
T PRK14127 28 VDKFLDDVIKDYEAF----QKEIEELQQENARLKAQVDELTKQVSVG 70 (109)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 455555555566664 4456678888888888888888877643
No 55
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.81 E-value=16 Score=29.05 Aligned_cols=11 Identities=55% Similarity=0.848 Sum_probs=7.5
Q ss_pred HHHHHHHHHHH
Q 034704 49 IDELEQSINDL 59 (86)
Q Consensus 49 IDdLEksI~dL 59 (86)
|.+||++|.+|
T Consensus 208 ik~LEksi~EL 218 (297)
T KOG0810|consen 208 IKKLEKSIREL 218 (297)
T ss_pred HHHHHHHHHHH
Confidence 55677777766
No 56
>PRK11115 transcriptional regulator PhoU; Provisional
Probab=60.33 E-value=54 Score=23.44 Aligned_cols=51 Identities=12% Similarity=0.251 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 034704 13 TADMTAFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEM 63 (86)
Q Consensus 13 ~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm~qa 63 (86)
...|...|...|...-.-|.+-......+|-++-..||.|+..|.+.....
T Consensus 25 l~~M~~~v~~ml~~~~~al~~~d~~~~~~i~~~e~~id~l~~~I~~~l~~~ 75 (236)
T PRK11115 25 VLTMGGLVEQQLSDAITAMHNQDAELAKRVIEGDHKVNMMEVAIDEACVRI 75 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHChHHHHHHHHHHHHHHHHH
Confidence 345566666666666666766666778889999999999999988655554
No 57
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=59.59 E-value=49 Score=25.71 Aligned_cols=40 Identities=18% Similarity=0.445 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 034704 20 VQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEM 63 (86)
Q Consensus 20 Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm~qa 63 (86)
|..++..|.++|.. +..+++.+|+.|+.+-+++++++...
T Consensus 238 I~~~~~~l~~~~~~----~~~~~~~l~k~l~~a~~~~~~~~~~~ 277 (304)
T PF02646_consen 238 IAELAGKLYDRFGK----FVEHLEKLGKSLDKAVKSYNKAVGSL 277 (304)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666677766 45667788888888888888777543
No 58
>PF05929 Phage_GPO: Phage capsid scaffolding protein (GPO) serine peptidase; InterPro: IPR009228 This entry is represented by Bacteriophage P2, GpO. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacteriophage capsid scaffolding protein (GpO) and some related bacterial sequences. GpO is thought to function in both the assembly of proheads and the cleavage of GpN [].; GO: 0019069 viral capsid assembly
Probab=59.33 E-value=84 Score=24.99 Aligned_cols=58 Identities=14% Similarity=0.259 Sum_probs=39.8
Q ss_pred CHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCCCC
Q 034704 12 NTADMTAFVQNLLQQMQS-------RFQTMSESIIAKIDEMGSRIDELEQSINDLRSEMGIEGSA 69 (86)
Q Consensus 12 s~~dLT~~Vq~LLqQmQ~-------kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm~qaG~e~~~ 69 (86)
...+|...|+.+-++.++ +|.....++-....++..+++.|.+.+++|.++.......
T Consensus 193 ~~~~~~~ave~ia~~~~~~~~~~~~~ls~~~~~~~~~~~~l~~~~~~~~~~f~~L~~~L~~~~~~ 257 (276)
T PF05929_consen 193 QFADLQQAVEAIAEQQQELEEAFEEQLSEQETQVAELKQELKEQHEALTEDFAALKEKLSSTDAN 257 (276)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhCCCCC
Confidence 345666666666665554 4444555555566777788899999999999987765553
No 59
>COG5570 Uncharacterized small protein [Function unknown]
Probab=58.62 E-value=13 Score=23.71 Aligned_cols=30 Identities=17% Similarity=0.297 Sum_probs=25.9
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhccCC
Q 034704 38 IIAKIDEMGSRIDELEQSINDLRSEMGIEG 67 (86)
Q Consensus 38 I~~RiDeMgsRIDdLEksI~dLm~qaG~e~ 67 (86)
|-++|++.++|=-+||+.|.+-|+.-+++.
T Consensus 3 ieshl~eL~kkHg~le~ei~ea~n~Ps~dd 32 (57)
T COG5570 3 IESHLAELEKKHGNLEREIQEAMNSPSSDD 32 (57)
T ss_pred HHHHHHHHHHhhchHHHHHHHHhcCCCcch
Confidence 678999999999999999999998766554
No 60
>PF15136 UPF0449: Uncharacterised protein family UPF0449
Probab=58.45 E-value=23 Score=24.42 Aligned_cols=32 Identities=28% Similarity=0.458 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 034704 27 MQSRFQTMSESIIAKIDEMGSRIDELEQSIND 58 (86)
Q Consensus 27 mQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~d 58 (86)
|..|.+...+.+-.|.++|-..-++||+.|.+
T Consensus 65 ~NerLqqa~~~Lkkk~e~L~~age~Le~~i~~ 96 (97)
T PF15136_consen 65 MNERLQQARDQLKKKCEELRQAGEELERDIEQ 96 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77888888899999999999999999999975
No 61
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=57.08 E-value=26 Score=28.43 Aligned_cols=31 Identities=23% Similarity=0.452 Sum_probs=27.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034704 11 QNTADMTAFVQNLLQQMQSRFQTMSESIIAK 41 (86)
Q Consensus 11 ~s~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~R 41 (86)
.+..||-+++..|++|+|+-|..+..++=.|
T Consensus 219 Mt~~EL~qL~~~L~~qIq~vfeeLt~~vQEK 249 (285)
T PF06937_consen 219 MTLDELKQLNEKLLQQIQDVFEELTQQVQEK 249 (285)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999998887665
No 62
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=56.39 E-value=40 Score=21.86 Aligned_cols=7 Identities=43% Similarity=0.881 Sum_probs=2.5
Q ss_pred hHHHHHH
Q 034704 48 RIDELEQ 54 (86)
Q Consensus 48 RIDdLEk 54 (86)
+++.|++
T Consensus 102 ~~~~l~~ 108 (129)
T cd00890 102 QIEKLEK 108 (129)
T ss_pred HHHHHHH
Confidence 3333333
No 63
>PF12462 Helicase_IV_N: DNA helicase IV / RNA helicase N terminal; InterPro: IPR022161 This domain family is found in bacteria and eukaryotes, and is approximately 170 amino acids in length. The family is found in association with PF00580 from PFAM. Nucleolin unwinds nucleic acid strands in the 5' to 3' direction with respect to the bound strand. It can unwind RNA-RNA duplexes, as well as DNA-DNA and DNA-RNA duplexes. Nucleolin is modulated by phosphorylation of serine and threonine residues in its N-terminal region.
Probab=56.24 E-value=59 Score=23.26 Aligned_cols=42 Identities=21% Similarity=0.198 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 034704 13 TADMTAFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQ 54 (86)
Q Consensus 13 ~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEk 54 (86)
-++-..|...+.+.-|.-|.+|+..+...+..+-..|+.|+.
T Consensus 75 w~e~~~Fa~~l~~~wq~w~~~~~~~~~~~L~~~~~~i~~~~~ 116 (166)
T PF12462_consen 75 WSEAQRFAHHLNQAWQQWSQEQSEQLAEVLPQWLQAIQRLSA 116 (166)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 357788999999999999999999999999999888888764
No 64
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=56.06 E-value=55 Score=21.39 Aligned_cols=19 Identities=16% Similarity=0.552 Sum_probs=7.5
Q ss_pred HHHHHhhhHHHHHHHHHHH
Q 034704 41 KIDEMGSRIDELEQSINDL 59 (86)
Q Consensus 41 RiDeMgsRIDdLEksI~dL 59 (86)
+|+.+...+++|++.+.++
T Consensus 78 ~i~~l~~~~~~l~~~~~el 96 (105)
T cd00632 78 RIKRLERQEEDLQEKLKEL 96 (105)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444333
No 65
>PRK11546 zraP zinc resistance protein; Provisional
Probab=55.79 E-value=77 Score=23.03 Aligned_cols=51 Identities=18% Similarity=0.359 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hhhHHHHHHHHHHHHHhh
Q 034704 13 TADMTAFVQNLLQQMQSRFQTMSESIIAKIDEM----------GSRIDELEQSINDLRSEM 63 (86)
Q Consensus 13 ~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~RiDeM----------gsRIDdLEksI~dLm~qa 63 (86)
+.|=-+.+|.+.+..+.++..+=.+|.+|=.|+ ..+|..|-+.|.+|..+.
T Consensus 45 T~EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL 105 (143)
T PRK11546 45 TTEQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSL 105 (143)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 334445566666666666677778888886666 346777777777776543
No 66
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=55.25 E-value=46 Score=20.84 Aligned_cols=35 Identities=26% Similarity=0.610 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHhhhHHHHHHHHHHH
Q 034704 25 QQMQSRFQTMSESI---IAKIDEMGSRIDELEQSINDL 59 (86)
Q Consensus 25 qQmQ~kFqtmS~~I---~~RiDeMgsRIDdLEksI~dL 59 (86)
|+++.+|+.+-.++ ..+|..+...+..++--+.+|
T Consensus 1 Qe~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL 38 (106)
T PF01920_consen 1 QELQNKFQELNQQLQQLEQQIQQLERQLRELELTLEEL 38 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777654432 233333444444444444443
No 67
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=54.96 E-value=40 Score=22.06 Aligned_cols=26 Identities=23% Similarity=0.479 Sum_probs=14.7
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHh
Q 034704 37 SIIAKIDEMGSRIDELEQSINDLRSE 62 (86)
Q Consensus 37 ~I~~RiDeMgsRIDdLEksI~dLm~q 62 (86)
.+-.|++.+..+|+.|++++.++-.+
T Consensus 67 ~Le~~~e~le~~i~~l~~~~~~l~~~ 92 (105)
T cd00632 67 ELKERLETIELRIKRLERQEEDLQEK 92 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455556666666666666655544
No 68
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=54.78 E-value=50 Score=20.54 Aligned_cols=19 Identities=26% Similarity=0.475 Sum_probs=8.8
Q ss_pred HhhhHHHHHHHHHHHHHhh
Q 034704 45 MGSRIDELEQSINDLRSEM 63 (86)
Q Consensus 45 MgsRIDdLEksI~dLm~qa 63 (86)
-..+||.|++.+..|..+.
T Consensus 30 Qq~~I~~L~~~l~~L~~rl 48 (69)
T PF04102_consen 30 QQRQIDRLQRQLRLLRERL 48 (69)
T ss_dssp HHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555554443
No 69
>TIGR02135 phoU_full phosphate transport system regulatory protein PhoU. This model describes PhoU, a regulatory protein of unknown mechanism for high-affinity phosphate ABC transporter systems. The protein consists of two copies of the domain described by Pfam model pfam01895. Deletion of PhoU activates constitutive expression of the phosphate ABC transporter and allows phosphate transport, but causes a growth defect and so likely has some second function.
Probab=54.37 E-value=66 Score=21.81 Aligned_cols=47 Identities=19% Similarity=0.285 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 034704 13 TADMTAFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDL 59 (86)
Q Consensus 13 ~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dL 59 (86)
...|...|...|...-.=|.+-......+|-++-.+||.|+..|...
T Consensus 14 l~~m~~~~~~ml~~~~~~~~~~d~~~~~~i~~~e~~id~l~~~i~~~ 60 (212)
T TIGR02135 14 LLEMGGLVEEQLEDAVRALTEKDRELARKVIEDDDQINALEVKIEEK 60 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHChHHHHHHHHHHHHH
Confidence 34566667777777777777766788888999999999999998763
No 70
>PRK00965 tetrahydromethanopterin S-methyltransferase subunit B; Provisional
Probab=54.35 E-value=18 Score=24.87 Aligned_cols=31 Identities=23% Similarity=0.370 Sum_probs=24.5
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhccCCCCCCC
Q 034704 42 IDEMGSRIDELEQSINDLRSEMGIEGSASPS 72 (86)
Q Consensus 42 iDeMgsRIDdLEksI~dLm~qaG~e~~~~~~ 72 (86)
++..-.|||.||+-..||++..-...++-.+
T Consensus 33 ~~pi~E~i~kLe~~addL~nsLdP~~~~l~S 63 (96)
T PRK00965 33 MDPIEEEINKLEALADDLENSLDPRNPPLNS 63 (96)
T ss_pred chHHHHHHHHHHHHHHHHHhccCCCCChhhc
Confidence 5677789999999999999987766555433
No 71
>PF05440 MtrB: Tetrahydromethanopterin S-methyltransferase subunit B; InterPro: IPR008690 The N5-methyltetrahydromethanopterin: coenzyme M (2.1.1.86 from EC) of Methanosarcina mazei Go1 is a membrane-associated, corrinoid-containing protein that uses a transmethylation reaction to drive an energy-conserving sodium ion pump [].; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=54.31 E-value=20 Score=24.75 Aligned_cols=31 Identities=26% Similarity=0.432 Sum_probs=24.9
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhccCCCCCCC
Q 034704 42 IDEMGSRIDELEQSINDLRSEMGIEGSASPS 72 (86)
Q Consensus 42 iDeMgsRIDdLEksI~dLm~qaG~e~~~~~~ 72 (86)
+|..-.|||.||+-..||++..-.+.++-.+
T Consensus 32 ~~pi~eqi~kLe~~addl~nsLdP~~~~l~S 62 (97)
T PF05440_consen 32 MDPINEQIDKLEKAADDLVNSLDPRTPPLNS 62 (97)
T ss_pred chHHHHHHHHHHHHHHHHHhccCCCCCcccc
Confidence 6777889999999999999988766655443
No 72
>PF13887 MRF_C1: Myelin gene regulatory factor -C-terminal domain 1
Probab=54.22 E-value=9.2 Score=22.38 Aligned_cols=12 Identities=58% Similarity=0.977 Sum_probs=7.8
Q ss_pred HHHhhhHHHHHH
Q 034704 43 DEMGSRIDELEQ 54 (86)
Q Consensus 43 DeMgsRIDdLEk 54 (86)
+...+|||+||+
T Consensus 24 ~~Le~rI~ele~ 35 (36)
T PF13887_consen 24 DNLETRIDELER 35 (36)
T ss_pred ccHHHHHHHHhh
Confidence 566667777664
No 73
>PF11074 DUF2779: Domain of unknown function(DUF2779); InterPro: IPR021301 This domain is conserved in bacteria. The function is not known.
Probab=54.15 E-value=50 Score=23.04 Aligned_cols=39 Identities=13% Similarity=0.399 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 034704 16 MTAFVQNLLQQMQSR----------FQTMSESIIAKIDEMGSRIDELEQSINDLR 60 (86)
Q Consensus 16 LT~~Vq~LLqQmQ~k----------FqtmS~~I~~RiDeMgsRIDdLEksI~dLm 60 (86)
...++++|++.+... |+. +||.+|+.+..++++.|..+.
T Consensus 57 r~~~~~~L~~~i~~~~g~ivvyN~sfE~------~rL~ela~~~p~~~~~l~~I~ 105 (130)
T PF11074_consen 57 RRELIEALIKAIGSIYGSIVVYNKSFEK------TRLKELAELFPDYAEKLNSII 105 (130)
T ss_pred hHHHHHHHHHHhhhhcCeEEEechHHHH------HHHHHHHHHhHHHHHHHHHHH
Confidence 356889999999988 763 456666666655555555444
No 74
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=53.59 E-value=50 Score=26.47 Aligned_cols=38 Identities=13% Similarity=0.160 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCCC
Q 034704 31 FQTMSESIIAKIDEMGSRIDELEQSINDLRSEMGIEGS 68 (86)
Q Consensus 31 FqtmS~~I~~RiDeMgsRIDdLEksI~dLm~qaG~e~~ 68 (86)
.......|-.++++...++++.|+.+.+...+.|+..+
T Consensus 159 ~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~ 196 (498)
T TIGR03007 159 SDSAQRFIDEQIKTYEKKLEAAENRLKAFKQENGGILP 196 (498)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCc
Confidence 44566777789999999999999999999999887543
No 75
>PRK11519 tyrosine kinase; Provisional
Probab=52.75 E-value=81 Score=27.23 Aligned_cols=61 Identities=21% Similarity=0.290 Sum_probs=43.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHH-HHHH---HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCC
Q 034704 7 EDPKQNTADMTAFVQNLLQQM-QSRF---QTMSESIIAKIDEMGSRIDELEQSINDLRSEMGIEG 67 (86)
Q Consensus 7 ~~~~~s~~dLT~~Vq~LLqQm-Q~kF---qtmS~~I~~RiDeMgsRIDdLEksI~dLm~qaG~e~ 67 (86)
.||.....=+.++++..+++. ..|+ +...+.|-.|+.+...+++..|+.+.+...+.|+-.
T Consensus 237 ~dP~~Aa~iaN~l~~~Yi~~~~~~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~vd 301 (719)
T PRK11519 237 EDREQIRDILNSITRNYLEQNIERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVD 301 (719)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 344444444455555555443 3333 366778889999999999999999999999998754
No 76
>PRK00846 hypothetical protein; Provisional
Probab=52.62 E-value=17 Score=23.96 Aligned_cols=16 Identities=13% Similarity=0.090 Sum_probs=7.3
Q ss_pred hHHHHHHHHHHHHHhh
Q 034704 48 RIDELEQSINDLRSEM 63 (86)
Q Consensus 48 RIDdLEksI~dLm~qa 63 (86)
.||.|.+.|.-|..+.
T Consensus 42 ~I~~L~~ql~~L~~rL 57 (77)
T PRK00846 42 TGARNAELIRHLLEDL 57 (77)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444433
No 77
>PF03500 Cellsynth_D: Cellulose synthase subunit D; InterPro: IPR022798 Cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues, is the major component of wood and thus paper, and is synthesized by plants, most algae, some bacteria and fungi, and even some animals. The genes that synthesize cellulose in higher plants differ greatly from the well-characterised genes found in Acetobacter and Agrobacterium spp. More correctly designated as "cellulose synthase catalytic subunits", plant cellulose synthase (CesA) proteins are integral membrane proteins, approximately 1,000 amino acids in length. There are a number of highly conserved residues, including several motifs shown to be necessary for processive glycosyltransferase activity []. An operon encoding 4 proteins required for bacterial cellulose biosynthesis (bcs) in Acetobacter xylinus (Gluconacetobacter xylinus) has been isolated via genetic complementation with strains lacking cellulose synthase activity []. Nucleotide sequence analysis showed the cellulose synthase operon to consist of 4 genes, designated bcsA, bcsB, bcsC and bcsD, all of which are required for maximal bacterial cellulose synthesis in A. xylinum. The calculated molecular mass of the protein encoded by bcsD is 17.3kDa []. The function of BcsD is unknown. This entry represents the D subunit from bacterial cellulose synthase.; PDB: 3AJ1_B 3AJ2_A 3A8E_A.
Probab=52.11 E-value=88 Score=22.91 Aligned_cols=46 Identities=24% Similarity=0.482 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------------HHHHHHHHHHHHHhhc
Q 034704 17 TAFVQNLLQQMQSRFQTMSESIIAKIDEMGSR------------IDELEQSINDLRSEMG 64 (86)
Q Consensus 17 T~~Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsR------------IDdLEksI~dLm~qaG 64 (86)
+-|++.|+.+|.+.-.. ++.-.-|-.||.| +++||++|+.+....+
T Consensus 2 ~lFl~aLa~E~~~q~g~--~e~~~fLr~mG~rlA~r~PLp~~~Tv~~LE~~iN~~la~~~ 59 (144)
T PF03500_consen 2 SLFLRALAEEFEDQAGE--EELRAFLRRMGERLAARHPLPACETVADLERAINAVLARFD 59 (144)
T ss_dssp HHHHHHHHHHHHHHSHH--HHHHHHHHHHHHHHCTTB-----SSHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHhCC
Confidence 45677777666654422 1122223445554 6999999999988764
No 78
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=51.98 E-value=88 Score=26.71 Aligned_cols=62 Identities=16% Similarity=0.246 Sum_probs=44.2
Q ss_pred CCCCCCHHHHHHHHHHHHH-HHHHHHH---HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCCC
Q 034704 7 EDPKQNTADMTAFVQNLLQ-QMQSRFQ---TMSESIIAKIDEMGSRIDELEQSINDLRSEMGIEGS 68 (86)
Q Consensus 7 ~~~~~s~~dLT~~Vq~LLq-QmQ~kFq---tmS~~I~~RiDeMgsRIDdLEksI~dLm~qaG~e~~ 68 (86)
.+|.....=+.++++..++ ++..|++ .....+-.||+++..++.+.|+.+.+...+.|+-.+
T Consensus 164 ~dP~~Aa~iaN~la~~Y~~~~~~~k~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~ 229 (754)
T TIGR01005 164 EDPKLAAAIPDAIAAAYIAGQGAAKSESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMG 229 (754)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 3444333334555555553 3445554 567888999999999999999999999999998654
No 79
>COG3143 CheZ Chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]
Probab=51.46 E-value=1.1e+02 Score=23.90 Aligned_cols=33 Identities=18% Similarity=0.449 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 034704 27 MQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSE 62 (86)
Q Consensus 27 mQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm~q 62 (86)
|---||.+..|||.|+=+. |.++|+++-.++..
T Consensus 140 mAQDfQDLTGQVIKrv~dl---VqeiE~~Lv~il~d 172 (217)
T COG3143 140 MAQDFQDLTGQVIKRVMDV---VQEIESQLVMILLD 172 (217)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHc
Confidence 4557999999999998666 66889999998843
No 80
>PF10975 DUF2802: Protein of unknown function (DUF2802); InterPro: IPR021244 This bacterial family of proteins has no known function.
Probab=51.44 E-value=17 Score=23.05 Aligned_cols=19 Identities=42% Similarity=0.746 Sum_probs=11.5
Q ss_pred HhhhHHHHHHHHHHHHHhh
Q 034704 45 MGSRIDELEQSINDLRSEM 63 (86)
Q Consensus 45 MgsRIDdLEksI~dLm~qa 63 (86)
||.||..||+.+..|..+-
T Consensus 3 ~g~~l~~l~~~l~~l~~~~ 21 (70)
T PF10975_consen 3 MGQRLAELEQQLKQLEDQQ 21 (70)
T ss_pred HhHHHHHHHHHHHHHHHHH
Confidence 5666666666666655543
No 81
>COG0783 Dps DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]
Probab=49.97 E-value=33 Score=24.93 Aligned_cols=48 Identities=15% Similarity=0.340 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH----HHHHHHHHhhccCCCCCC
Q 034704 24 LQQMQSRFQTMSESIIAKIDEMGSRIDELE----QSINDLRSEMGIEGSASP 71 (86)
Q Consensus 24 LqQmQ~kFqtmS~~I~~RiDeMgsRIDdLE----ksI~dLm~qaG~e~~~~~ 71 (86)
+-.++.+|+..=+++...+|+++.||-.|= .+..+++.-+.+.+.++.
T Consensus 46 F~~lHe~~ee~y~el~~~~DeiAERi~~LGg~p~~t~~~~~~~s~ike~~~~ 97 (156)
T COG0783 46 FFALHEKLEELYEELAEHVDEIAERIRALGGVPLGTLSEYLKLSSIKEEPGD 97 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcccHHHHHHhCCCcccCCC
Confidence 557788999999999999999999998873 456667766666665554
No 82
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=49.19 E-value=45 Score=25.00 Aligned_cols=30 Identities=20% Similarity=0.439 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 034704 26 QMQSRFQTMSESIIAKIDEMGSRIDELEQS 55 (86)
Q Consensus 26 QmQ~kFqtmS~~I~~RiDeMgsRIDdLEks 55 (86)
.|..-|..+..++=.-..||-..|++|++.
T Consensus 106 eL~~tf~rL~~~Vd~~~~eL~~eI~~L~~~ 135 (171)
T PF04799_consen 106 ELSSTFARLCQQVDQTKNELEDEIKQLEKE 135 (171)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444433333333333333333
No 83
>PF02524 KID: KID repeat; InterPro: IPR003900 This group of proteins contains the KID repeat as found in Borrelia and spirochete Repeat motif-containing proteins including RepA/Rep+, RepU and various Bdr proteins. RepA and related Borrelia proteins have been suggested to play an important genus-wide role in the biology of the Borrelia []. Bdr proteins are polymorphic inner membrane proteins produced by most Borrelia species []. The bdr genes of encode proteins that form three distinct subfamilies: BdrD, BdrE, and BdrF. bdr orthologues have been appear to be present in all Borrelia species that have been analysed []. It is thought that BdrF2 and the other proteins encoded by the operon form an inner-membrane-associated protein complex that may interact with DNA and which may act during transmission or in the early stages of infection [].
Probab=49.15 E-value=5.5 Score=18.03 Aligned_cols=10 Identities=40% Similarity=0.866 Sum_probs=7.7
Q ss_pred hHHHHHHHHH
Q 034704 48 RIDELEQSIN 57 (86)
Q Consensus 48 RIDdLEksI~ 57 (86)
+||..|||++
T Consensus 1 KID~VEknL~ 10 (11)
T PF02524_consen 1 KIDSVEKNLN 10 (11)
T ss_pred CcchHhhhcc
Confidence 4788888874
No 84
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=48.92 E-value=92 Score=22.32 Aligned_cols=32 Identities=31% Similarity=0.374 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHH-HHHhhhHHHHH--HHHHHHHHh
Q 034704 31 FQTMSESIIAKI-DEMGSRIDELE--QSINDLRSE 62 (86)
Q Consensus 31 FqtmS~~I~~Ri-DeMgsRIDdLE--ksI~dLm~q 62 (86)
|++--..|-+|| -||+.+||+-| |.|-+.+..
T Consensus 35 ~~e~lEsiAAKIIkDisdkIdkCeC~Kelle~Lk~ 69 (121)
T PF03310_consen 35 DQENLESIAAKIIKDISDKIDKCECNKELLEALKK 69 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-TTHHHHHHHHT-
T ss_pred hHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHhc
Confidence 344555666775 78999999997 777776654
No 85
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=48.52 E-value=1.1e+02 Score=22.82 Aligned_cols=44 Identities=18% Similarity=0.490 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 034704 18 AFVQNLLQQMQSRF-------QTMSESIIAKIDEMGSRIDELEQSINDLRS 61 (86)
Q Consensus 18 ~~Vq~LLqQmQ~kF-------qtmS~~I~~RiDeMgsRIDdLEksI~dLm~ 61 (86)
...+.||..++.-| +.+-..|-.+|.+-..+++||...+.+-..
T Consensus 156 ~~A~~LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~ 206 (264)
T PF06008_consen 156 KEAEDLLSRVQKWFQKPQQENESLAEAIRDDLNDYNAKLQDLRDLLNEAQN 206 (264)
T ss_pred HHHHHHHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777777 355566777778888888888777776544
No 86
>PRK03100 sec-independent translocase; Provisional
Probab=48.39 E-value=94 Score=22.40 Aligned_cols=45 Identities=11% Similarity=0.336 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHH
Q 034704 15 DMTAFVQNLLQQMQSRFQTMSESIIAKID-EMGSRIDELEQSINDLR 60 (86)
Q Consensus 15 dLT~~Vq~LLqQmQ~kFqtmS~~I~~RiD-eMgsRIDdLEksI~dLm 60 (86)
.|-.++..+ -+.-.+|..+...+-..++ +|+..+|+|.+.+.+|-
T Consensus 25 rLP~~~r~l-G~~vr~~R~~~~~~~~~~~~elg~e~~dlrk~l~el~ 70 (136)
T PRK03100 25 RLPGAIRWT-ARALRQARDYASGATSQLREELGPEFDDLRKPLGELQ 70 (136)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444444433 3344567778888888884 78888999988776653
No 87
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=47.83 E-value=1.1e+02 Score=26.87 Aligned_cols=53 Identities=17% Similarity=0.285 Sum_probs=46.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 034704 7 EDPKQNTADMTAFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDL 59 (86)
Q Consensus 7 ~~~~~s~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dL 59 (86)
.++.....+....+++.+..+|.||..+-+++-+..-.|..|+-.||..+.-.
T Consensus 453 ~~~~d~~E~~~~~Le~~~~~l~~Rl~~i~~e~~~~~~km~qr~~~le~~~~~~ 505 (536)
T KOG0500|consen 453 QDPSDDEEKRDESLENEVVLLQLRLARILDEYHSSQQKMKQRLSVLEKQLKPG 505 (536)
T ss_pred cCcccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhhh
Confidence 34455667777888999999999999999999999999999999999999887
No 88
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=47.83 E-value=31 Score=22.51 Aligned_cols=22 Identities=36% Similarity=0.632 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHHH
Q 034704 36 ESIIAKIDEMGSRIDELEQSIN 57 (86)
Q Consensus 36 ~~I~~RiDeMgsRIDdLEksI~ 57 (86)
.++..+.+-|-.||+-||+=+.
T Consensus 45 ~~L~~~a~rm~eRI~tLE~ILd 66 (75)
T TIGR02976 45 QELYAKADRLEERIDTLERILD 66 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 4556667778888888887553
No 89
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=47.14 E-value=1.1e+02 Score=22.18 Aligned_cols=35 Identities=17% Similarity=0.315 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 034704 28 QSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSE 62 (86)
Q Consensus 28 Q~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm~q 62 (86)
+..|.+-...+...+..-+..|++|++.|.++..+
T Consensus 144 ~~~l~~~~~~l~~~l~~~~g~I~~L~~~I~~~~~~ 178 (184)
T PF05791_consen 144 SRNLKTDVDELQSILAGENGDIPQLQKQIENLNEE 178 (184)
T ss_dssp HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHTGG
T ss_pred HHHHHHhHHHHHHHHhcccCCHHHHHHHHHHHHHH
Confidence 44577888888888888888899999999887654
No 90
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=46.92 E-value=91 Score=21.84 Aligned_cols=42 Identities=7% Similarity=0.309 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 034704 11 QNTADMTAFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDEL 52 (86)
Q Consensus 11 ~s~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdL 52 (86)
....+|-+=.+.+|.+.++||+..++.+..|.-++-.+-|+.
T Consensus 37 ~e~~~lR~r~~~~Lk~~r~rl~~~~d~v~~~sk~a~~~tD~y 78 (104)
T COG4575 37 DEAEELRSKAESALKEARDRLGDTGDAVVQRSKAAADATDDY 78 (104)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 345677777888888888888888888888888777776654
No 91
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=46.90 E-value=53 Score=25.41 Aligned_cols=36 Identities=6% Similarity=0.048 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCCCC
Q 034704 34 MSESIIAKIDEMGSRIDELEQSINDLRSEMGIEGSA 69 (86)
Q Consensus 34 mS~~I~~RiDeMgsRIDdLEksI~dLm~qaG~e~~~ 69 (86)
-...+-.++++...++.+.|+.+.+...+.|+-.+.
T Consensus 171 a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~ 206 (362)
T TIGR01010 171 TIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPK 206 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChH
Confidence 344666788999999999999999999998886554
No 92
>COG1322 Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]
Probab=46.88 E-value=53 Score=27.68 Aligned_cols=47 Identities=2% Similarity=0.248 Sum_probs=33.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHH
Q 034704 12 NTADMTAFVQNLLQQMQSRFQTMSESIIAKIDEMGSRID-ELEQSIND 58 (86)
Q Consensus 12 s~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRID-dLEksI~d 58 (86)
...++........+....+|..++.+.+.||+.|-.+++ -+++.+..
T Consensus 103 l~~~~~~~~~~i~e~~~~~~~el~~~~~~~Ll~~~~~~~e~f~e~l~~ 150 (448)
T COG1322 103 LSSEFQELANEIFEELNRRLAELNQQNLKQLLKPLREVLEKFREQLEQ 150 (448)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666677777778888999999999999866554 45555544
No 93
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=46.85 E-value=43 Score=20.43 Aligned_cols=48 Identities=15% Similarity=0.222 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccC
Q 034704 19 FVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEMGIE 66 (86)
Q Consensus 19 ~Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm~qaG~e 66 (86)
=.+++++.+...-..+-.++-.+|.+-.++|+-|+..|..+.......
T Consensus 19 Gae~m~~~~~t~~~~~~~~~~~~l~~s~~kI~~L~~~L~~l~~~~~~~ 66 (70)
T PF02185_consen 19 GAENMLQAYSTDKKKVLSEAESQLRESNQKIELLREQLEKLQQRSQNS 66 (70)
T ss_dssp HHHHHHHHHCCHHCH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCHH--
T ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCC
Confidence 345556554222222456777889999999999999999987765443
No 94
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=46.84 E-value=72 Score=20.06 Aligned_cols=41 Identities=27% Similarity=0.460 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 034704 22 NLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEM 63 (86)
Q Consensus 22 ~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm~qa 63 (86)
.+-..| .|+..-.-..-.|+.|.-.|..+|+..|..|-.+.
T Consensus 15 ~~~eEL-~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ 55 (61)
T PF08826_consen 15 AIQEEL-TKVKSANLAFESKLQEAEKRNRELEQEIERLKKEM 55 (61)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444 35666666777888888888888888888887654
No 95
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=46.05 E-value=65 Score=21.31 Aligned_cols=17 Identities=18% Similarity=0.534 Sum_probs=7.2
Q ss_pred HHHhhhHHHHHHHHHHH
Q 034704 43 DEMGSRIDELEQSINDL 59 (86)
Q Consensus 43 DeMgsRIDdLEksI~dL 59 (86)
+..-..|.+++++|.++
T Consensus 91 ~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 91 ERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444443
No 96
>PF15134 DUF4570: Domain of unknown function (DUF4570)
Probab=46.05 E-value=1e+02 Score=21.68 Aligned_cols=44 Identities=25% Similarity=0.369 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHhhhHHHHHHHHH
Q 034704 14 ADMTAFVQNLLQQMQSRFQ----------TMSESIIAKIDEMGSRIDELEQSIN 57 (86)
Q Consensus 14 ~dLT~~Vq~LLqQmQ~kFq----------tmS~~I~~RiDeMgsRIDdLEksI~ 57 (86)
.||-+--.-|||+|+++|. ..+.....|-...=.-|+..|+++.
T Consensus 16 eEIlsqR~~LLq~mE~~~~~q~~~kk~~~~a~~~A~kRN~~LLqDie~~eksLq 69 (109)
T PF15134_consen 16 EEILSQREMLLQQMENKFGDQNTEKKSQQQASEAAKKRNKQLLQDIEAAEKSLQ 69 (109)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4666777889999999996 2444455566666555666666663
No 97
>PF10152 DUF2360: Predicted coiled-coil domain-containing protein (DUF2360); InterPro: IPR019309 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53.
Probab=45.88 E-value=78 Score=22.38 Aligned_cols=28 Identities=32% Similarity=0.585 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 034704 29 SRFQTMSESIIAKIDEMGSRIDELEQSINDL 59 (86)
Q Consensus 29 ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dL 59 (86)
+||... .=.|+-+|+.||..||..+.=|
T Consensus 13 N~F~~~---cE~kL~~~e~~Lq~~E~~l~iL 40 (148)
T PF10152_consen 13 NRFASV---CEEKLSDMEQRLQRLEATLNIL 40 (148)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 455443 3456777788888888776433
No 98
>PF02865 STAT_int: STAT protein, protein interaction domain; InterPro: IPR013799 The STAT protein (Signal Transducers and Activators of Transcription) family contains transcription factors that are specifically activated to regulate gene transcription when cells encounter cytokines and growth factors, hence they act as signal transducers in the cytoplasm and transcription activators in the nucleus []. Binding of these factors to cell-surface receptors leads to receptor autophosphorylation at a tyrosine, the phosphotyrosine being recognised by the STAT SH2 domain, which mediates the recruitment of STAT proteins from the cytosol and their association with the activated receptor. The STAT proteins are then activated by phosphorylation via members of the JAK family of protein kinases, causing them to dimerise and translocated to the nucleus, where they bind to specific promoter sequences in target genes. In mammals, STATs comprise a family of seven structurally and functionally related proteins: Stat1, Stat2, Stat3, Stat4, Stat5a and Stat5b, Stat6. STAT proteins play a critical role in regulating innate and acquired host immune responses. Dysregulation of at least two STAT signalling cascades (i.e. Stat3 and Stat5) is associated with cellular transformation. Signalling through the JAK/STAT pathway is initiated when a cytokine binds to its corresponding receptor. This leads to conformational changes in the cytoplasmic portion of the receptor, initiating activation of receptor associated members of the JAK family of kinases. The JAKs, in turn, mediate phosphorylation at the specific receptor tyrosine residues, which then serve as docking sites for STATs and other signalling molecules. Once recruited to the receptor, STATs also become phosphorylated by JAKs, on a single tyrosine residue. Activated STATs dissociate from the receptor, dimerise, translocate to the nucleus and bind to members of the GAS (gamma activated site) family of enhancers. The seven STAT proteins identified in mammals range in size from 750 and 850 amino acids. The chromosomal distribution of these STATs, as well as the identification of STATs in more primitive eukaryotes, suggest that this family arose from a single primordial gene. STATs share structurally and functionally conserved domains including: an N-terminal domain that strengthens interactions between STAT dimers on adjacent DNA-binding sites; a coiled-coil STAT domain that is implicated in protein-protein interactions; a DNA-binding domain with an immunoglobulin-like fold similar to p53 tumour suppressor protein; an EF-hand-like linker domain connecting the DNA-binding and SH2 domains; an SH2 domain (IPR000980 from INTERPRO) that acts as a phosphorylation-dependent switch to control receptor recognition and DNA-binding; and a C-terminal transactivation domain []. The crystal structure of the N terminus of Stat4 reveals a dimer. The interface of this dimer is formed by a ring-shaped element consisting of five short helices. Several studies suggest that this N-terminal dimerisation promotes cooperativity of binding to tandem GAS elements and with the transcriptional coactivator CBP/p300. This entry represents the N-terminal domain, which is responsible for protein interactions. This domain has a multi-helical structure that can be subdivided into two structural sub-domains.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0004871 signal transducer activity, 0006355 regulation of transcription, DNA-dependent, 0007165 signal transduction; PDB: 1BGF_A 1YVL_A.
Probab=45.40 E-value=72 Score=22.17 Aligned_cols=33 Identities=24% Similarity=0.402 Sum_probs=23.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Q 034704 10 KQNTADMTAFVQNLLQQMQSRFQTMS--ESIIAKI 42 (86)
Q Consensus 10 ~~s~~dLT~~Vq~LLqQmQ~kFqtmS--~~I~~Ri 42 (86)
+....-.+.++++||++|+.+....+ +.++.|+
T Consensus 50 ~~~~~~A~~l~~~ll~~Lq~~~~~~~~~~~fl~~~ 84 (124)
T PF02865_consen 50 PQDESQASVLFQNLLQELQQQASRQSQEDNFLLQH 84 (124)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHT-HHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHhcCcchhHHHH
Confidence 55677789999999999999987765 4677665
No 99
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=45.15 E-value=84 Score=21.01 Aligned_cols=38 Identities=13% Similarity=0.442 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHH--H---HHHHHHHHHhhhHHHHHHHHHHHHH
Q 034704 24 LQQMQSRFQTMS--E---SIIAKIDEMGSRIDELEQSINDLRS 61 (86)
Q Consensus 24 LqQmQ~kFqtmS--~---~I~~RiDeMgsRIDdLEksI~dLm~ 61 (86)
|+++..++..|. + .+-.+|-+|..+++.|+.+|..+-.
T Consensus 51 l~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~ 93 (106)
T PF10805_consen 51 LQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSH 93 (106)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 445555555541 1 2334455555555555555554433
No 100
>PF03105 SPX: SPX domain; InterPro: IPR004331 The SPX domain is named after SYG1/Pho81/XPR1 proteins. This 180 residue length domain is found at the amino terminus of a variety of proteins. In the yeast protein SYG1, the N terminus directly binds to the G- protein beta subunit and inhibits transduction of the mating pheromone signal [] suggesting that all the members of this family are involved in G-protein associated signal transduction. The C-terminal of these proteins often have an EXS domain (IPR004342 from INTERPRO) []. The N-termini of several proteins involved in the regulation of phosphate transport, including the putative phosphate level sensors PHO81 from Saccharomyces cerevisiae and NUC-2 from Neurospora crassa, are also members of this family [, ]. NUC-2 contains several ankyrin repeats (IPR002110 from INTERPRO). Several members of this family are the XPR1 proteins: the xenotropic and polytropic retrovirus receptor confers susceptibility to infection with Murine leukemia virus (MLV) []. The similarity between SYG1, phosphate regulators and XPR1 sequences has been previously noted, as has the additional similarity to several predicted proteins, of unknown function, from Drosophila melanogaster, Arabidopsis thaliana, Caenorhabditis elegans, Schizosaccharomyces pombe, and Saccharomyces cerevisiae [, ]. In addition, given the similarities between XPR1 and SYG1 and phosphate regulatory proteins, it has been proposed that XPR1 might be involved in G-protein associated signal transduction [, , ] and may itself function as a phosphate sensor [].
Probab=45.15 E-value=1.1e+02 Score=21.55 Aligned_cols=50 Identities=16% Similarity=0.372 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhc
Q 034704 15 DMTAFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEMG 64 (86)
Q Consensus 15 dLT~~Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm~qaG 64 (86)
+....-..++.-|..-+..+.+-...+..++..|++.|++.|..+.....
T Consensus 88 ~~~~~~~~F~~~L~~El~KVn~Fy~~k~~el~~~~~~L~~ql~~l~~~~~ 137 (275)
T PF03105_consen 88 DNEESEEEFFELLDEELEKVNDFYKEKEKELRERLEELQKQLEELREQRS 137 (275)
T ss_pred hhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 33345556666667777777777888888999999999999888876554
No 101
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=44.94 E-value=1.5e+02 Score=24.70 Aligned_cols=38 Identities=24% Similarity=0.486 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 034704 24 LQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRS 61 (86)
Q Consensus 24 LqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm~ 61 (86)
++.|++.|++--.-|...+.|=-.|..-||..|+|++.
T Consensus 235 ~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~e 272 (395)
T PF10267_consen 235 IEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTE 272 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 55566667666677788889999999999999999975
No 102
>PF01895 PhoU: PhoU domain; InterPro: IPR008170 This family contains phosphate regulatory proteins including PhoU. PhoU proteins are known to play a role in the regulation of phosphate uptake. The PhoU domain is composed of a three helix bundle []. The PhoU protein contains two copies of this domain. The domain binds to an iron cluster via its conserved E/DXXXD motif. Deletion of PhoU activates constitutive expression of the phosphate ABC transporter and allows phosphate transport, but causes a growth defect; suggesting that the protein has some secondary function []. ; PDB: 2I0M_A 1T72_B 1T8B_A 1SUM_B 1VCT_A 2BKN_A 2BKP_A 2BKO_A.
Probab=43.99 E-value=64 Score=18.69 Aligned_cols=45 Identities=22% Similarity=0.390 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 034704 15 DMTAFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDL 59 (86)
Q Consensus 15 dLT~~Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dL 59 (86)
.|...|..+|...-.=|.+-......++-++-..||.|...+..-
T Consensus 3 ~m~~~~~~~l~~~~~~~~~~d~~~a~~i~~~e~~id~~~~~~~~~ 47 (88)
T PF01895_consen 3 EMGELVEEMLDDAIEAFEERDSELAQEIIQLEEEIDELYREIRRQ 47 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 566777777777777787776677777878888888888777543
No 103
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=43.96 E-value=90 Score=20.37 Aligned_cols=20 Identities=15% Similarity=0.468 Sum_probs=13.4
Q ss_pred HHHhhhHHHHHHHHHHHHHh
Q 034704 43 DEMGSRIDELEQSINDLRSE 62 (86)
Q Consensus 43 DeMgsRIDdLEksI~dLm~q 62 (86)
-+.-.++|+|++=|.+-...
T Consensus 30 r~v~~kLneLd~Li~eA~~r 49 (109)
T PF03980_consen 30 RDVVEKLNELDKLIEEAKER 49 (109)
T ss_pred hhHHHHHHHHHHHHHHHHHh
Confidence 45677788888777665443
No 104
>PHA03385 IX capsid protein IX,hexon associated protein IX; Provisional
Probab=43.72 E-value=37 Score=24.86 Aligned_cols=27 Identities=22% Similarity=0.581 Sum_probs=22.8
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 034704 37 SIIAKIDEMGSRIDELEQSINDLRSEM 63 (86)
Q Consensus 37 ~I~~RiDeMgsRIDdLEksI~dLm~qa 63 (86)
.++.+++.++.|+.+|-+.+.+|..+.
T Consensus 104 ~llaqLealsqqL~~ls~qv~~L~~~~ 130 (135)
T PHA03385 104 VLLAQLEALSQQLQELSQQVAQLREQT 130 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhch
Confidence 468889999999999999999987654
No 105
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=43.39 E-value=1.4e+02 Score=24.49 Aligned_cols=18 Identities=17% Similarity=0.231 Sum_probs=9.9
Q ss_pred HHHHHhhhHHHHHHHHHH
Q 034704 41 KIDEMGSRIDELEQSIND 58 (86)
Q Consensus 41 RiDeMgsRIDdLEksI~d 58 (86)
+|+....|+|.|++.+..
T Consensus 301 ~L~~~~qrLd~L~~RL~~ 318 (432)
T TIGR00237 301 KLALQQLQFEKLEKRKQA 318 (432)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 355555566666555544
No 106
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=43.25 E-value=1e+02 Score=23.12 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=15.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q 034704 9 PKQNTADMTAFVQNLLQQMQSR 30 (86)
Q Consensus 9 ~~~s~~dLT~~Vq~LLqQmQ~k 30 (86)
|..+...+-.-++.+|+.|+.|
T Consensus 121 ~~~~l~~~l~ea~~mL~emr~r 142 (264)
T PF06008_consen 121 PSEDLQRALAEAQRMLEEMRKR 142 (264)
T ss_pred CHHHHHHHHHHHHHHHHHHHhc
Confidence 3444556667778888888766
No 107
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=43.15 E-value=1.7e+02 Score=23.22 Aligned_cols=23 Identities=26% Similarity=0.520 Sum_probs=21.8
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhc
Q 034704 42 IDEMGSRIDELEQSINDLRSEMG 64 (86)
Q Consensus 42 iDeMgsRIDdLEksI~dLm~qaG 64 (86)
|++|...|..|.+.|..|..+++
T Consensus 202 i~el~e~I~~L~~eV~~L~~~~~ 224 (258)
T PF15397_consen 202 IDELEEEIPQLRAEVEQLQAQAQ 224 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 89999999999999999999998
No 108
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=42.95 E-value=73 Score=19.02 Aligned_cols=37 Identities=16% Similarity=0.531 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 034704 22 NLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSE 62 (86)
Q Consensus 22 ~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm~q 62 (86)
..+++|+.++..++ ...+.+..++..|+..+..|-.+
T Consensus 26 ~~~~~Le~~~~~L~----~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 26 QYIEELEEKVEELE----SENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhh
Confidence 35667777776644 45667778888888888877654
No 109
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=42.85 E-value=1.6e+02 Score=22.82 Aligned_cols=47 Identities=21% Similarity=0.396 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhhhHHHHHHHHHHHHHh
Q 034704 16 MTAFVQNLLQQMQSRFQTMSESII-----AKIDEMGSRIDELEQSINDLRSE 62 (86)
Q Consensus 16 LT~~Vq~LLqQmQ~kFqtmS~~I~-----~RiDeMgsRIDdLEksI~dLm~q 62 (86)
++.-...++..+|.+|-+.|..+- +.|..+-..|..+|..+.+....
T Consensus 3 ~~~~~~~~~d~lq~~i~~as~~lNd~TGYs~Ie~LK~~i~~~E~~l~~~r~~ 54 (207)
T PF05546_consen 3 LSKKLSFYMDSLQETIFTASQALNDVTGYSEIEKLKKSIEELEDELEAARQE 54 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455567778888888888887774 56888888899999888876554
No 110
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=42.60 E-value=28 Score=29.81 Aligned_cols=19 Identities=16% Similarity=0.344 Sum_probs=10.8
Q ss_pred HHHHHHHHhhhHHHHHHHH
Q 034704 38 IIAKIDEMGSRIDELEQSI 56 (86)
Q Consensus 38 I~~RiDeMgsRIDdLEksI 56 (86)
.-.||+++.+.|..|++.+
T Consensus 102 le~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 102 DQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455556666666665555
No 111
>PF11945 WASH_WAHD: WAHD domain of WASH complex; InterPro: IPR021854 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. This entry represents the WASH subunit of the WASH complex. WASH genes duplicated to multiple chromosomal ends during primate evolution, with highest copy number reached in humans, whose WASH repertoires probably vary extensively among individuals []. It is therefore difficult to determine which gene is functional or not. The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q. Paralogous regions contain 7 transcriptional units. Duplicated WASH genes are also present in the Xq/Yq pseudoautosomal region, as well as on chromosome 1 and 15. The chromosome 16 copy seems to be a pseudogene.
Probab=42.37 E-value=1.5e+02 Score=23.60 Aligned_cols=47 Identities=15% Similarity=0.300 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhhHHHHHHHHHHHHH
Q 034704 15 DMTAFVQNLLQQMQSRFQTMSESII---AKIDEMGSRIDELEQSINDLRS 61 (86)
Q Consensus 15 dLT~~Vq~LLqQmQ~kFqtmS~~I~---~RiDeMgsRIDdLEksI~dLm~ 61 (86)
.+...++.|-+-..+=|..++..|- .||.....||..+++.|..|..
T Consensus 22 qi~~aL~~L~~v~~diF~rI~~Rv~~~~~~l~~i~~Ri~~~qaKi~~l~g 71 (297)
T PF11945_consen 22 QIADALEYLDKVSNDIFSRISARVERNRERLQAIQQRIEVAQAKIEKLQG 71 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3334444433333444555544443 5678888999999999988853
No 112
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=42.32 E-value=1.2e+02 Score=21.48 Aligned_cols=28 Identities=29% Similarity=0.481 Sum_probs=21.4
Q ss_pred HHhhhHHHHHHHHHHHHHhhccCCCCCC
Q 034704 44 EMGSRIDELEQSINDLRSEMGIEGSASP 71 (86)
Q Consensus 44 eMgsRIDdLEksI~dLm~qaG~e~~~~~ 71 (86)
-.-+|++.|...|.+.|..+|...-.++
T Consensus 72 ~~e~~~~~Lk~yL~~~m~~~g~~ki~t~ 99 (162)
T PF05565_consen 72 SIENRIDRLKEYLLDAMEAAGIKKIKTP 99 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCceeecC
Confidence 3456778888888899999998766554
No 113
>PF07586 HXXSHH: Protein of unknown function (DUF1552); InterPro: IPR011447 This is a family of proteins identified in Rhodopirellula baltica.
Probab=42.24 E-value=1.5e+02 Score=22.68 Aligned_cols=48 Identities=13% Similarity=0.147 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcc
Q 034704 18 AFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEMGI 65 (86)
Q Consensus 18 ~~Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm~qaG~ 65 (86)
.+++-++++.+.--..++..=-.|||+==.-|.+||+.|.........
T Consensus 162 SvLD~v~~d~~~L~~~Lg~~Dr~kLd~yl~sireiE~rl~~~~~~~~~ 209 (302)
T PF07586_consen 162 SVLDLVREDAKSLRRRLGAEDRQKLDQYLDSIREIEKRLQQAEAWADC 209 (302)
T ss_pred cHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Confidence 455666666666666666666789999999999999999666655544
No 114
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=42.18 E-value=98 Score=20.40 Aligned_cols=23 Identities=13% Similarity=0.434 Sum_probs=16.8
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHh
Q 034704 40 AKIDEMGSRIDELEQSINDLRSE 62 (86)
Q Consensus 40 ~RiDeMgsRIDdLEksI~dLm~q 62 (86)
.++.++..|||.+.+.+.+|-++
T Consensus 35 ~~v~~l~~klDa~~~~l~~l~~~ 57 (75)
T PF05531_consen 35 PDVTELNKKLDAQSAQLTTLNTK 57 (75)
T ss_pred CchHHHHHHHHHHHHHHHHHHHH
Confidence 45566788888888888877664
No 115
>PF13864 Enkurin: Calmodulin-binding
Probab=41.81 E-value=98 Score=20.16 Aligned_cols=36 Identities=17% Similarity=0.395 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHH-----HHHHHHHHHHhhhHHHHHHHHHHH
Q 034704 24 LQQMQSRFQTMS-----ESIIAKIDEMGSRIDELEQSINDL 59 (86)
Q Consensus 24 LqQmQ~kFqtmS-----~~I~~RiDeMgsRIDdLEksI~dL 59 (86)
.+++...|+.|+ -.+..|=.+|-.+|++||+.|.-|
T Consensus 53 ~~el~~ey~~lp~~~DT~~~~~rK~~lE~~L~qlE~dI~~l 93 (98)
T PF13864_consen 53 WDELNKEYQKLPFSIDTLRKKRRKEELEKELKQLEKDIKKL 93 (98)
T ss_pred HHHHHHHHHhCCcccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566543 223445578889999999998744
No 116
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=41.38 E-value=93 Score=25.32 Aligned_cols=50 Identities=22% Similarity=0.450 Sum_probs=37.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhHHHHHHHHHH
Q 034704 7 EDPKQNTADMTAFVQNLLQQMQSRFQTMSESI-IAKIDEMGSRIDELEQSIND 58 (86)
Q Consensus 7 ~~~~~s~~dLT~~Vq~LLqQmQ~kFqtmS~~I-~~RiDeMgsRIDdLEksI~d 58 (86)
...+.+..||-+..-.||+.+.+|=-.++.|= ..|| .|.||-+||+.+.-
T Consensus 268 ~~~~~s~sdLksl~~aLle~indK~~al~Hqr~tNkI--Lg~rv~ELE~kl~~ 318 (319)
T PF09789_consen 268 PASPQSISDLKSLATALLETINDKNLALQHQRKTNKI--LGNRVAELEKKLKT 318 (319)
T ss_pred CCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HHHHHHHHHHHHhc
Confidence 34567899999999999999999976655441 1222 58999999998754
No 117
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=40.02 E-value=1.8e+02 Score=23.31 Aligned_cols=16 Identities=25% Similarity=0.557 Sum_probs=6.7
Q ss_pred HHHHhhhHHHHHHHHH
Q 034704 42 IDEMGSRIDELEQSIN 57 (86)
Q Consensus 42 iDeMgsRIDdLEksI~ 57 (86)
++..-.+++.|++.+.
T Consensus 307 l~~~~q~L~~l~~rL~ 322 (438)
T PRK00286 307 LAQQQQRLDRLQQRLQ 322 (438)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444443
No 118
>COG5460 Uncharacterized conserved protein [Function unknown]
Probab=39.81 E-value=28 Score=23.60 Aligned_cols=21 Identities=24% Similarity=0.373 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHH
Q 034704 36 ESIIAKIDEMGSRIDELEQSI 56 (86)
Q Consensus 36 ~~I~~RiDeMgsRIDdLEksI 56 (86)
..|..|+++|..-|+.|||-+
T Consensus 60 a~i~ekl~d~te~l~~LEkpv 80 (82)
T COG5460 60 AVIEEKLADMTEELFALEKPV 80 (82)
T ss_pred HHHHHHHHHHHHHHHHHhccc
Confidence 467789999999999999854
No 119
>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms []. It consists of a mineral core of hydrated ferric oxide, and a multi-subunit protein shell that encloses the former and assures its solubility in an aqueous environment. In animals the protein is mainly cytoplasmic and there are generally two or more genes that encode closely related subunits - in mammals there are two subunits which are known as H(eavy) and L(ight). In plants ferritin is found in the chloroplast []. This entry represents the main structural domain of ferritin. The domain is also found in other ferritin-like proteins such as members of the DNA protection during starvation (DPS) family and bacterioferritins.; GO: 0008199 ferric iron binding, 0006879 cellular iron ion homeostasis; PDB: 1N1Q_C 4DYU_E 2YJJ_D 2YJK_B 2VXX_B 3FVB_A 2WLU_A 2XGW_A 2WLA_A 1Z4A_D ....
Probab=39.59 E-value=57 Score=20.56 Aligned_cols=30 Identities=27% Similarity=0.261 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 034704 25 QQMQSRFQTMSESIIAKIDEMGSRIDELEQ 54 (86)
Q Consensus 25 qQmQ~kFqtmS~~I~~RiDeMgsRIDdLEk 54 (86)
--+...|+.+++......|.+..||-.|.-
T Consensus 31 ~~l~~~~~~~a~e~~~h~~~l~e~i~~lgg 60 (142)
T PF00210_consen 31 PGLAKFFQDQAEEEREHADELAERILMLGG 60 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred hhhHHHhHHHHHHHHHHHHHHHHHHhcCCC
Confidence 346677888888888888888888877654
No 120
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=39.56 E-value=98 Score=19.52 Aligned_cols=30 Identities=17% Similarity=0.402 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 034704 27 MQSRFQTMSESIIAKIDEMGSRIDELEQSI 56 (86)
Q Consensus 27 mQ~kFqtmS~~I~~RiDeMgsRIDdLEksI 56 (86)
+..+...+-++|..+.-+...+|..|++..
T Consensus 44 ~~~~l~~~~~~~~~~~~~i~~~lk~l~~~~ 73 (117)
T smart00503 44 LREKLERLIDDIKRLAKEIRAKLKELEKEN 73 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 344455555555555555555555555443
No 121
>PF00517 GP41: Retroviral envelope protein; InterPro: IPR000328 This entry represents envelope proteins from a variety of retroviruses. It includes the GP41 subunit of the envelope protein complex from Human immunodeficiency virus (HIV) and Simian-Human immunodeficiency virus (SIV), which mediate membrane fusion during viral entry []. It has a core composed of a six-helix bundle and is folded by its trimeric N- and C-terminal heptad-repeats (NHR and CHR) []. Derivatives of this protein prevent HIV-1 from entering cell lines and primary human CD4+ cells in vitro [], making it an attractive subject of gene therapy studies against HIV and related retroviruses. The entry also represents envelop proteins from Bovine immunodeficiency virus, Feline immunodeficiency virus and Equine infectious anemia virus (EIAV) [, ], as well as the Gp36 protein from Mouse mammary tumor virus (MMTV) and Human endogenous retrovirus (HERV).; GO: 0005198 structural molecule activity, 0019031 viral envelope; PDB: 2EZO_B 2EZQ_B 2EZR_A 2JNR_B 1F23_D 2EZP_A 1JEK_A 2Q7C_A 2Q5U_A 2Q3I_A ....
Probab=39.52 E-value=1.6e+02 Score=21.88 Aligned_cols=38 Identities=18% Similarity=0.204 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 034704 24 LQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRS 61 (86)
Q Consensus 24 LqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm~ 61 (86)
.++.|..++..-..|-..|.-++.|+..||+-+.|-..
T Consensus 30 ~e~~~~lL~l~v~gik~~V~~L~aRV~alE~~l~dq~l 67 (204)
T PF00517_consen 30 QEAQQHLLQLTVWGIKQGVKQLQARVLALERYLKDQQL 67 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhhhhhhhhhhhHHHHHHHhhhHHH
Confidence 45556777766667777888899999999998877554
No 122
>cd01043 DPS DPS protein, ferritin-like diiron-binding domain. DPS (DNA Protecting protein under Starved conditions) domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Some DPS proteins nonspecifically bind DNA, protecting it from cleavage caused by reactive oxygen species such as the hydroxyl radicals produced during oxidation of Fe(II) by hydrogen peroxide. These proteins assemble into dodecameric structures, some form DPS-DNA co-crystalline complexes, and possess iron and H2O2 detoxification capabilities. Expression of DPS is induced by oxidative or nutritional stress, including metal ion starvation. Members of the DPS family are homopolymers formed by 12 four-helix bundle subunits that assemble with 23 symmetry into a hollow shell. The DPS ferroxidase site is unusual in that it is not located in a four-helix bundle as in ferritin, but is shared by 2-fold symmetry-related subunits providing the iron ligands. Many DPS sequences (e.g., E. coli) disp
Probab=39.26 E-value=66 Score=21.30 Aligned_cols=44 Identities=18% Similarity=0.351 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH----HHHHHHHhhccCC
Q 034704 24 LQQMQSRFQTMSESIIAKIDEMGSRIDELEQ----SINDLRSEMGIEG 67 (86)
Q Consensus 24 LqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEk----sI~dLm~qaG~e~ 67 (86)
+..++..|+....++..-+|+++.||-.|.- +..++...+.+.+
T Consensus 29 f~~lh~~l~e~~~~~~~~~D~lAERi~~lgg~P~~~~~~~~~~s~l~~ 76 (139)
T cd01043 29 FFALHELFEELYDELREAIDEIAERIRALGGKPLGTLKEYAELSTIKE 76 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHhHCCCCC
Confidence 4567888999999999999999999987753 3444444444443
No 123
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=38.95 E-value=70 Score=19.57 Aligned_cols=27 Identities=30% Similarity=0.478 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 034704 36 ESIIAKIDEMGSRIDELEQSINDLRSE 62 (86)
Q Consensus 36 ~~I~~RiDeMgsRIDdLEksI~dLm~q 62 (86)
+.|-.||++.-..|-+||+.=..|+.|
T Consensus 15 d~IEqkiedid~qIaeLe~KR~~Lv~q 41 (46)
T PF08946_consen 15 DNIEQKIEDIDEQIAELEAKRQRLVDQ 41 (46)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 447778899999999999988888765
No 124
>PF06875 PRF: Plethodontid receptivity factor PRF; InterPro: IPR010681 This family consists of several plethodontid receptivity factor (PRF) proteins which seem to be specific to Plethodon jordani (Jordan's salamander). PRF is a courtship pheromone produced by males increase female receptivity [].
Probab=38.87 E-value=89 Score=24.35 Aligned_cols=35 Identities=11% Similarity=0.285 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhccCCCCC
Q 034704 36 ESIIAKIDEMGSRIDELEQSINDLRSEMGIEGSAS 70 (86)
Q Consensus 36 ~~I~~RiDeMgsRIDdLEksI~dLm~qaG~e~~~~ 70 (86)
..+..++.+-..++.-|=-||+.+|++.|...++.
T Consensus 130 ~~L~~~Le~a~~~~qgL~sniaaIMtaLG~~~~~~ 164 (214)
T PF06875_consen 130 PELLRQLEEARASAQGLLSNIAAIMTALGFPVPPP 164 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 36788999999999999999999999999975433
No 125
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=38.25 E-value=1.3e+02 Score=25.56 Aligned_cols=38 Identities=18% Similarity=0.470 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 034704 20 VQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSIN 57 (86)
Q Consensus 20 Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~ 57 (86)
+.++++++-.+++.--.+.+.++.++-.+||+|++.|+
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~el~~l~~~l~ 415 (650)
T TIGR03185 378 LEVLIQQVKRELQDAKSQLLKELRELEEELAEVDKKIS 415 (650)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444444443334445555555555555555553
No 126
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=38.22 E-value=88 Score=18.60 Aligned_cols=30 Identities=27% Similarity=0.545 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034704 13 TADMTAFVQNLLQQMQSRFQTMSESIIAKI 42 (86)
Q Consensus 13 ~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~Ri 42 (86)
..||-.+=|.+|+.|---|+.|-+.||.-|
T Consensus 2 ~~dle~~KqEIL~EvrkEl~K~K~EIIeA~ 31 (40)
T PF08776_consen 2 SSDLERLKQEILEEVRKELQKVKEEIIEAI 31 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358889999999999999999999998776
No 127
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=38.22 E-value=91 Score=23.05 Aligned_cols=19 Identities=37% Similarity=0.742 Sum_probs=7.4
Q ss_pred HHHHHHhhhHHHHHHHHHH
Q 034704 40 AKIDEMGSRIDELEQSIND 58 (86)
Q Consensus 40 ~RiDeMgsRIDdLEksI~d 58 (86)
.|.+-+.++|+.|++.|.+
T Consensus 193 ~~~~~l~~~~~~~~~~i~~ 211 (239)
T PF07195_consen 193 SRIDSLNSQIKSLDKQIED 211 (239)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3333333433333333333
No 128
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=37.92 E-value=73 Score=21.78 Aligned_cols=11 Identities=0% Similarity=0.296 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 034704 28 QSRFQTMSESI 38 (86)
Q Consensus 28 Q~kFqtmS~~I 38 (86)
...+..+-.+|
T Consensus 21 ~~~~~~LK~~~ 31 (107)
T PF06156_consen 21 LEELEELKKQL 31 (107)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 129
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=37.77 E-value=1.2e+02 Score=20.03 Aligned_cols=27 Identities=19% Similarity=0.375 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 034704 36 ESIIAKIDEMGSRIDELEQSINDLRSE 62 (86)
Q Consensus 36 ~~I~~RiDeMgsRIDdLEksI~dLm~q 62 (86)
..+-.|++.+-.+|..||+.+..|-.+
T Consensus 70 ~~l~~r~e~ie~~i~~lek~~~~l~~~ 96 (110)
T TIGR02338 70 QELKEKKETLELRVKTLQRQEERLREQ 96 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555566666666665555443
No 130
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=37.76 E-value=1.9e+02 Score=23.32 Aligned_cols=52 Identities=23% Similarity=0.529 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCCC
Q 034704 17 TAFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEMGIEGS 68 (86)
Q Consensus 17 T~~Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm~qaG~e~~ 68 (86)
..++...++-=...|..-++.+..||.+...++..-|+.+.+-..+.|....
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~lr~~~~~ae~~~~~~~~~~~l~~~ 230 (458)
T COG3206 179 QAYLADQLEAQLEAFRRASDSLDERLEELRARLQEAEAQVEDFRAQHGLTDA 230 (458)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 3444555555567799999999999999999999999999999999998763
No 131
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=37.61 E-value=25 Score=28.33 Aligned_cols=13 Identities=46% Similarity=0.841 Sum_probs=5.2
Q ss_pred hhHHHHHHHHHHH
Q 034704 47 SRIDELEQSINDL 59 (86)
Q Consensus 47 sRIDdLEksI~dL 59 (86)
.||..|+.+|.||
T Consensus 172 k~i~~l~~kl~Dl 184 (370)
T PF02994_consen 172 KRIKKLEDKLDDL 184 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333344444443
No 132
>PF09580 Spore_YhcN_YlaJ: Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ); InterPro: IPR019076 This entry contains YhcN and YlaJ, which are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic, 40-residue C-terminal domain.
Probab=37.53 E-value=62 Score=22.45 Aligned_cols=30 Identities=20% Similarity=0.409 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhhhH------HHHHHHHHHHHHhhc
Q 034704 35 SESIIAKIDEMGSRI------DELEQSINDLRSEMG 64 (86)
Q Consensus 35 S~~I~~RiDeMgsRI------DdLEksI~dLm~qaG 64 (86)
-..|+.||..|..+| +++++.|.+++...+
T Consensus 141 D~~~~~ri~~~~~~~~~g~~~~~~~~~~~~i~~r~~ 176 (177)
T PF09580_consen 141 DPDIFDRIRNLANRIRNGRPVSGFNDEIKEIVRRMF 176 (177)
T ss_pred CHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhhC
Confidence 356888888888877 789999999987654
No 133
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=36.93 E-value=76 Score=17.50 Aligned_cols=36 Identities=14% Similarity=0.422 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 034704 20 VQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDL 59 (86)
Q Consensus 20 Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dL 59 (86)
+...+..+..=|..|+..|. +=+..||.+|.++...
T Consensus 11 l~~~i~~l~~l~~~i~~~v~----~Q~~~ld~i~~~~~~~ 46 (60)
T cd00193 11 LEASIGELKQIFLDLGTEVE----EQGELLDRIEDNVDNA 46 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 44445556666766666543 3356677777666544
No 134
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=36.89 E-value=1.9e+02 Score=22.00 Aligned_cols=17 Identities=29% Similarity=0.655 Sum_probs=7.8
Q ss_pred HHHHhhhHHHHHHHHHH
Q 034704 42 IDEMGSRIDELEQSIND 58 (86)
Q Consensus 42 iDeMgsRIDdLEksI~d 58 (86)
|.....|||+|+..+..
T Consensus 193 l~~~~~~Ld~l~~rL~~ 209 (319)
T PF02601_consen 193 LEQQQQRLDELKQRLKQ 209 (319)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444433
No 135
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=36.83 E-value=1e+02 Score=18.94 Aligned_cols=51 Identities=16% Similarity=0.329 Sum_probs=23.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 034704 7 EDPKQNTADMTAFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLR 60 (86)
Q Consensus 7 ~~~~~s~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm 60 (86)
...++.-.+|...+..+.+++++.+..+-+.+-.+.++. .+++...+.+++
T Consensus 22 ~sG~e~R~~l~~~~~~~~~~~~~~~~~~~~~~k~~~~~~---~~~~~e~~~e~~ 72 (74)
T PF12732_consen 22 KSGKETREKLKDKAEDLKDKAKDLYEEAKEKVKEKAEET---ADEAKEKAKELK 72 (74)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhh
Confidence 334444455555555555555555554444444444442 233444444443
No 136
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=36.80 E-value=2.4e+02 Score=23.31 Aligned_cols=48 Identities=19% Similarity=0.353 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-H-------HHHHHHHHhhhHHHHHHHHHHHHHh
Q 034704 15 DMTAFVQNLLQQMQSRFQTMSE-S-------IIAKIDEMGSRIDELEQSINDLRSE 62 (86)
Q Consensus 15 dLT~~Vq~LLqQmQ~kFqtmS~-~-------I~~RiDeMgsRIDdLEksI~dLm~q 62 (86)
.|...|...-..|+.+|...-. . -+++|++|..||..||+.+...-..
T Consensus 345 ~l~~~l~~~~~e~~~~~~~~i~~~v~~Er~~~~~~l~~~~~~~~~le~~~~~~~~~ 400 (582)
T PF09731_consen 345 HLKNELREQAIELQREFEKEIKEKVEQERNGRLAKLAELNSRLKALEEALDARSEA 400 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555566666654322 2 2467899999999999988776543
No 137
>PF12205 GIT1_C: G protein-coupled receptor kinase-interacting protein 1 C term; InterPro: IPR022018 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF01412 from PFAM, PF00023 from PFAM, PF08518 from PFAM. GIT1 plays an important role in cell adhesion, motility, cytoskeletal remodeling and membrane trafficking. To perform this function, it localises p21-activated kinase (PAK) and PAK-interactive exchange factor to focal adhesions. Its activation is regulated by interaction between its paxillin-binding C-terminal and the LD motifs of paxillin. The C-terminal folds into a four helix bundle. ; PDB: 2JX0_A.
Probab=36.77 E-value=1.5e+02 Score=20.90 Aligned_cols=34 Identities=29% Similarity=0.443 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhh
Q 034704 14 ADMTAFVQNLLQQMQ----SRFQTMSESIIAKIDEMGS 47 (86)
Q Consensus 14 ~dLT~~Vq~LLqQmQ----~kFqtmS~~I~~RiDeMgs 47 (86)
.-+|.-++.||.-+| ++|-..++.|..-+.+|.+
T Consensus 19 E~vTk~IqeLl~aAQ~~~~~s~~pcae~I~~aV~~m~~ 56 (123)
T PF12205_consen 19 EQVTKRIQELLRAAQEGRHDSFAPCAERIRSAVTEMAA 56 (123)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHH
Confidence 346777888888887 5688888888888888853
No 138
>PF12296 HsbA: Hydrophobic surface binding protein A; InterPro: IPR021054 Hydrophobic surface binding proteins are typically between 171 to 275 amino acids in length. Although the HsbA amino acid sequence suggests that HsbA may be hydrophilic, HsbA adsorbed to hydrophobic PBSA (Polybutylene succinate-co-adipate) surfaces in the presence of NaCl or CaCl2. When HsbA was adsorbed on the hydrophobic PBSA surfaces, it promoted PBSA degradation via the CutL1 polyesterase. CutL1 interacts directly with HsbA attached to the hydrophobic QCM electrode surface. These results suggest that when HsbA is adsorbed onto the PBSA surface, it recruits CutL1, and that when CutL1 is accumulated on the PBSA surface, it stimulates PBSA degradation []. This entry is also characterised by a antigenic cell wall galactomannoprotein in Aspergillus fumigatus, which is a protein of 284 amino acid residues. It contains a serine- and threonine-rich region for O glycosylation, a signal peptide, and a putative glycosylphosphatidyl inositol attachment signal sequence. Ultrastructural analysis showed that the protein is present in the cell walls of hyphae and conidia []. ; PDB: 3L1N_A.
Probab=36.45 E-value=91 Score=20.14 Aligned_cols=42 Identities=14% Similarity=0.396 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHH---HHH--HHHHHHHHHHHHhhhHHHHHHHH
Q 034704 15 DMTAFVQNLLQQMQSR---FQT--MSESIIAKIDEMGSRIDELEQSI 56 (86)
Q Consensus 15 dLT~~Vq~LLqQmQ~k---Fqt--mS~~I~~RiDeMgsRIDdLEksI 56 (86)
.|...|..+|..+..| |.. .+..+...|..+...-+.|...|
T Consensus 75 ~l~~~i~~~l~~l~~Kk~~f~~~g~~~~v~~~L~~l~~~~~~l~~al 121 (124)
T PF12296_consen 75 TLQPDIQDALNALIAKKPAFDAAGLCSVVRADLQDLKTASDALSDAL 121 (124)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555566666554 543 55555566666666655555544
No 139
>PF05164 ZapA: Cell division protein ZapA; InterPro: IPR007838 This entry a structural domain found in the cell division protein ZapA, as well as in related proteins. This domain has a core structure consisting of two layers alpha/beta, and has a long C-terminal helix that forms dimeric parallel and tetrameric antiparallel coiled coils []. ZapA interacts with FtsZ, where FtsZ is part of a mid-cell cytokinetic structure termed the Z-ring that recruits a hierarchy of fission related proteins early in the bacterial cell cycle. ZapA drives the polymerisation and filament bundling of FtsZ, thereby contributing to the spatio-temporal tuning of the Z-ring.; PDB: 1T3U_B 1W2E_B 3HNW_A.
Probab=36.33 E-value=1e+02 Score=18.78 Aligned_cols=10 Identities=0% Similarity=0.411 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 034704 18 AFVQNLLQQM 27 (86)
Q Consensus 18 ~~Vq~LLqQm 27 (86)
.+|+.-+.++
T Consensus 28 ~~i~~~i~~~ 37 (89)
T PF05164_consen 28 ELINEKINEI 37 (89)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 140
>PF12896 Apc4: Anaphase-promoting complex, cyclosome, subunit 4; InterPro: IPR024790 Apc4 is one of the larger of the subunits of the anaphase-promoting complex (APC) or cyclosome. The anaphase-promoting complex is a multiprotein subunit E3 ubiquitin ligase complex that controls segregation of chromosomes and exit from mitosis in eukaryotes [, ]. Results in Caenorhabditis elegans show that the primary essential role of the spindle assembly checkpoint is not in the chromosome segregation process itself but rather in delaying anaphase onset until all chromosomes are properly attached to the spindle. The APC is likely to be required for all metaphase-to-anaphase transitions in a multicellular organism []. This entry represents the long domain downstream of the WD40 repeat/s that are present on the Apc4 subunits.
Probab=36.15 E-value=1.6e+02 Score=20.88 Aligned_cols=44 Identities=14% Similarity=0.357 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 034704 16 MTAFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDL 59 (86)
Q Consensus 16 LT~~Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dL 59 (86)
...-+++|+.-+..-++.|....-.-..+|.+++..+++.+.+-
T Consensus 25 ~~~~i~~ll~yi~~~l~~i~~~w~~~~~~~~~~l~~~~~~l~~~ 68 (210)
T PF12896_consen 25 KSSQIQSLLRYIKDTLDAIQEEWEEALQEFDRKLTNLADELQEK 68 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34567888888888888888888888899999999988766543
No 141
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=35.97 E-value=96 Score=24.95 Aligned_cols=41 Identities=20% Similarity=0.488 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHH--------HHHHHHhhhHHHHHHHHHHHHHhh
Q 034704 23 LLQQMQSRFQTMSESII--------AKIDEMGSRIDELEQSINDLRSEM 63 (86)
Q Consensus 23 LLqQmQ~kFqtmS~~I~--------~RiDeMgsRIDdLEksI~dLm~qa 63 (86)
-|.++-+|+..||..=+ .-|++..+-|++|++.|.+|-.+.
T Consensus 56 ~ld~~~~kl~~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i 104 (301)
T PF06120_consen 56 SLDELKEKLKEMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQI 104 (301)
T ss_pred hhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778888888875322 335566666667777666665543
No 142
>smart00338 BRLZ basic region leucin zipper.
Probab=35.77 E-value=98 Score=18.44 Aligned_cols=36 Identities=14% Similarity=0.453 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 034704 23 LLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSE 62 (86)
Q Consensus 23 LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm~q 62 (86)
-+++|+.+++.+.. ...++..+++.|+..+..|..+
T Consensus 27 ~~~~Le~~~~~L~~----en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 27 EIEELERKVEQLEA----ENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677666544 4567888888888888877664
No 143
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=35.72 E-value=85 Score=20.30 Aligned_cols=26 Identities=19% Similarity=0.567 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHH
Q 034704 36 ESIIAKIDEMGSRIDELEQSINDLRS 61 (86)
Q Consensus 36 ~~I~~RiDeMgsRIDdLEksI~dLm~ 61 (86)
+.|-.+++++...|+.+++.+..+..
T Consensus 97 ~~l~~~~~~l~~~~~~~~~~~~~l~~ 122 (129)
T cd00890 97 ETLEKQIEKLEKQLEKLQDQITELQE 122 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444433
No 144
>cd01111 HTH_MerD Helix-Turn-Helix DNA binding domain of the MerD transcription regulator. Helix-turn-helix (HTH) transcription regulator MerD. The putative secondary regulator of mercury resistance (mer) operons, MerD, has been shown to down-regulate the expression of this operon in gram-negative bacteria. It binds to the same operator DNA as MerR that activates transcription of the operon in the presence of mercury ions. The MerD protein shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily, which promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are conserved and contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules such as metal ions, drugs,
Probab=35.54 E-value=1.3e+02 Score=19.88 Aligned_cols=29 Identities=10% Similarity=0.218 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 034704 31 FQTMSESIIAKIDEMGSRIDELEQSINDL 59 (86)
Q Consensus 31 FqtmS~~I~~RiDeMgsRIDdLEksI~dL 59 (86)
.......+..+|++...+++.|...+.+|
T Consensus 78 ~~~~~~~~~~~l~~~~~~L~~l~~~L~~~ 106 (107)
T cd01111 78 PEACLAQLRQKIEVRRAALNALTTQLAEM 106 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555666667777777777777776654
No 145
>KOG3313 consensus Molecular chaperone Prefoldin, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=35.50 E-value=1.1e+02 Score=23.51 Aligned_cols=34 Identities=21% Similarity=0.500 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 034704 24 LQQMQSRFQTMSESIIAKIDEMGSRIDELEQSIN 57 (86)
Q Consensus 24 LqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~ 57 (86)
|+.--.|+.-|-..+++++-.|.+||-++|+++.
T Consensus 42 ~~E~~~kYkfme~~l~a~~~~l~~kIPd~entLe 75 (187)
T KOG3313|consen 42 LQERYGKYKFMEASLLAQKRRLKTKIPDIENTLE 75 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 3333445668999999999999999999999875
No 146
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=35.48 E-value=68 Score=20.93 Aligned_cols=20 Identities=25% Similarity=0.521 Sum_probs=13.9
Q ss_pred HHHHHHHHHhhhHHHHHHHH
Q 034704 37 SIIAKIDEMGSRIDELEQSI 56 (86)
Q Consensus 37 ~I~~RiDeMgsRIDdLEksI 56 (86)
++..+.+-|..||+.||+=+
T Consensus 46 ~L~~~a~rm~eRI~tLE~IL 65 (75)
T PF06667_consen 46 ELYEQAERMEERIETLERIL 65 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555677788888888755
No 147
>KOG3681 consensus Alpha-catenin [Extracellular structures]
Probab=35.44 E-value=1.1e+02 Score=28.16 Aligned_cols=48 Identities=19% Similarity=0.351 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 034704 15 DMTAFVQNLLQQMQSRFQ--TMSESIIAKIDEMGSRIDELEQSINDLRSE 62 (86)
Q Consensus 15 dLT~~Vq~LLqQmQ~kFq--tmS~~I~~RiDeMgsRIDdLEksI~dLm~q 62 (86)
-|..+++++|.++++.+. .-++.+-.-|+.|..|+.||.+.+...+.+
T Consensus 322 al~q~l~d~l~E~~~~~~~k~~~~~l~~ai~~l~kkl~dLrrqLr~a~~d 371 (835)
T KOG3681|consen 322 ALRQALQDLLSEYQSNAGRKGRSPALELAIDQLTKKLKDLKRQLRKAATD 371 (835)
T ss_pred HHHHHHHHHHHHHHHHhhccccChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567778888888888553 456777788999999999999998876654
No 148
>PF05873 Mt_ATP-synt_D: ATP synthase D chain, mitochondrial (ATP5H); InterPro: IPR008689 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit D from the F0 complex in F-ATPases found in mitochondria. The D subunit is part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In mitochondria, the peripheral stalk is composed of one copy each of subunits OSCP (oligomycin sensitivity conferral protein), F6, B and D []. There is no homologue of subunit D in bacterial or chloroplast F-ATPase, whose peripheral stalks are composed of one copy of the delta subunit (homologous to OSCP), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o); PDB: 2CLY_E 2WSS_U.
Probab=35.26 E-value=55 Score=23.64 Aligned_cols=44 Identities=16% Similarity=0.188 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhc
Q 034704 21 QNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEMG 64 (86)
Q Consensus 21 q~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm~qaG 64 (86)
.+.+..++..+..+...+-.-+.+...||.+||+.|..+-..--
T Consensus 84 d~~~~~i~~~e~~~~~~~~~~~~~s~~~i~~l~keL~~i~~~~P 127 (161)
T PF05873_consen 84 DKQTKEIDAQEKEAIKEAKEFEAESKKRIAELEKELANIESARP 127 (161)
T ss_dssp -TTTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 44566666666666666666677888889999988887755433
No 149
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.93 E-value=1.3e+02 Score=27.16 Aligned_cols=43 Identities=14% Similarity=0.239 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCCCCCCCC
Q 034704 31 FQTMSESIIAKIDEMGSRIDELEQSINDLRSEMGIEGSASPSL 73 (86)
Q Consensus 31 FqtmS~~I~~RiDeMgsRIDdLEksI~dLm~qaG~e~~~~~~~ 73 (86)
...|...+-.|+|+...|=|+|++-++.||.-+|.+-++...|
T Consensus 614 i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~~~lp~l~~A 656 (741)
T KOG4460|consen 614 LREMAERLADRYEEAKEKQEDLMNRMKKLLHSFHSELPVLSDA 656 (741)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccCCcchhH
Confidence 4466677788999999999999999999999999887776554
No 150
>PRK09458 pspB phage shock protein B; Provisional
Probab=34.71 E-value=71 Score=21.14 Aligned_cols=18 Identities=33% Similarity=0.490 Sum_probs=12.7
Q ss_pred HHHHHHHhhhHHHHHHHH
Q 034704 39 IAKIDEMGSRIDELEQSI 56 (86)
Q Consensus 39 ~~RiDeMgsRIDdLEksI 56 (86)
..+-+-|..||+-||+=+
T Consensus 48 ~~~A~rm~~RI~tLE~IL 65 (75)
T PRK09458 48 TEKAERMRERIQALEAIL 65 (75)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445566778888888754
No 151
>PRK09448 DNA starvation/stationary phase protection protein Dps; Provisional
Probab=34.70 E-value=77 Score=22.53 Aligned_cols=44 Identities=11% Similarity=0.219 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH----HHHHHHHhhccCC
Q 034704 24 LQQMQSRFQTMSESIIAKIDEMGSRIDELEQ----SINDLRSEMGIEG 67 (86)
Q Consensus 24 LqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEk----sI~dLm~qaG~e~ 67 (86)
+..++..|+.+-.++..-+|+++.||-.|=- +..++..-+.+++
T Consensus 53 f~~lH~~lee~~~~~~~~~D~iAERi~~lGg~p~~t~~e~~~~s~i~e 100 (162)
T PRK09448 53 FIAVHEMLDGFRTALEDHLDTMAERAVQLGGVALGTTQVVASKTPLKS 100 (162)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCCCCHHHHHHhCCCCC
Confidence 3456778888889999999999999876632 3344444444444
No 152
>COG4582 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.68 E-value=1.9e+02 Score=22.99 Aligned_cols=49 Identities=24% Similarity=0.458 Sum_probs=37.9
Q ss_pred HHHHHHHHHH------------HHHHHHH--HHHHHHHHHhhhHHHHHHHHHHHHHhhccCCC
Q 034704 20 VQNLLQQMQS------------RFQTMSE--SIIAKIDEMGSRIDELEQSINDLRSEMGIEGS 68 (86)
Q Consensus 20 Vq~LLqQmQ~------------kFqtmS~--~I~~RiDeMgsRIDdLEksI~dLm~qaG~e~~ 68 (86)
|+-||+||.- -|.++++ .|++|++==+.=+.+||+.=..|-...+|++-
T Consensus 18 ~E~L~~qle~~~t~~~~~q~~~ffrtl~dlldV~er~elkseLlKelerQ~q~l~~w~~vpgv 80 (244)
T COG4582 18 IEFLIQQLEVNLTIVDHAQALHFFRTLSELLDVFERGEVRTELLKELDRQQQKLQTWIGVPGV 80 (244)
T ss_pred HHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 5677887753 4777777 56889888888899999998888888777653
No 153
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=34.65 E-value=2.1e+02 Score=22.00 Aligned_cols=53 Identities=17% Similarity=0.305 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhc
Q 034704 12 NTADMTAFVQNLLQQMQSRFQ--------TMSESIIAKIDEMGSRIDELEQSINDLRSEMG 64 (86)
Q Consensus 12 s~~dLT~~Vq~LLqQmQ~kFq--------tmS~~I~~RiDeMgsRIDdLEksI~dLm~qaG 64 (86)
++.++..+.|.+++++-.+|- .=-..+-.++--.-.|||+||.-+.|++...|
T Consensus 43 ~vLd~yL~yQKafnE~MekYLe~lNlPSr~DiarvA~lvinlE~kvD~lee~fdd~~d~l~ 103 (189)
T TIGR02132 43 NVLDLNLFYQKALNDTTGNYLEQVNVPTKEDIANVASLVINLEEKVDLIEEFFDDKFDELE 103 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 154
>PF04336 DUF479: Protein of unknown function, DUF479; InterPro: IPR007431 This entry contains the Escherichia coli gene yajB, now renamed acpH, which encodes an ACP hydrolase. AcpH converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine prosthetic group from ACP []. A mutant E. coli strain having a total deletion of the acpH grows normally, showing that phosphodiesterase activity is not essential for growth, although it is required for turnover of the ACP prosthetic group in vivo. AcpH is found only in Gram-negative organisms suggesting that it plays a role in some aspect of lipid metabolism that is unique to these organisms. The most obvious of which is biosynthesis of lipid A. Because AcpH is a hydrolase, it could possibly be an editing enzyme that intercepts acyl-ACPs that would give an inappropriate lipid A structure if used as acyl donors []. ; GO: 0008770 [acyl-carrier-protein] phosphodiesterase activity, 0006633 fatty acid biosynthetic process
Probab=34.64 E-value=1.4e+02 Score=19.70 Aligned_cols=15 Identities=27% Similarity=0.552 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHH
Q 034704 15 DMTAFVQNLLQQMQS 29 (86)
Q Consensus 15 dLT~~Vq~LLqQmQ~ 29 (86)
.|..|++..-+.++.
T Consensus 16 ~L~~f~~~~Y~~L~~ 30 (106)
T PF04336_consen 16 PLEDFAQRFYQQLEA 30 (106)
T ss_pred CHHHHHHHHHHHHHh
Confidence 455555555554444
No 155
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=34.59 E-value=1.1e+02 Score=19.09 Aligned_cols=16 Identities=38% Similarity=0.787 Sum_probs=6.8
Q ss_pred HhhhHHHHHHHHHHHH
Q 034704 45 MGSRIDELEQSINDLR 60 (86)
Q Consensus 45 MgsRIDdLEksI~dLm 60 (86)
++++||.|...|+.|.
T Consensus 15 L~~kvdqLs~dv~~lr 30 (56)
T PF04728_consen 15 LNSKVDQLSSDVNALR 30 (56)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444433
No 156
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=34.39 E-value=2.1e+02 Score=21.77 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=22.0
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhc
Q 034704 38 IIAKIDEMGSRIDELEQSINDLRSEMG 64 (86)
Q Consensus 38 I~~RiDeMgsRIDdLEksI~dLm~qaG 64 (86)
.....-+|+.-|+.+|+.|+.+|.+..
T Consensus 35 ~~~~~~~m~~i~~e~Ek~i~~~i~e~~ 61 (207)
T PF05010_consen 35 LHKENQEMRKIMEEYEKTIAQMIEEKQ 61 (207)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567899999999999999998754
No 157
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=34.36 E-value=1.4e+02 Score=19.66 Aligned_cols=47 Identities=19% Similarity=0.382 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 034704 15 DMTAFVQNLLQQMQSRFQ---TMSESIIAKIDEMGSRIDELEQSINDLRS 61 (86)
Q Consensus 15 dLT~~Vq~LLqQmQ~kFq---tmS~~I~~RiDeMgsRIDdLEksI~dLm~ 61 (86)
-++.||+.=|+--...|. .|-.....|..+|.....+|++++.+|-.
T Consensus 7 ~~~~~v~~el~~t~~d~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~ 56 (99)
T PF10046_consen 7 KVSKYVESELEATNEDYNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQ 56 (99)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555554444444442 44555555556666555555555555544
No 158
>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain. DPSL (DPS-like). DPSL is a phylogenetically distinct class within the ferritin-like superfamily, and similar in many ways to the DPS (DNA Protecting protein under Starved conditions) proteins. Like DPS, these proteins are expressed in response to oxidative stress, form dodecameric cage-like particles, preferentially utilize hydrogen peroxide in the controlled oxidation of iron, and possess a short N-terminal extension implicated in stabilizing cellular DNA. This domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. These proteins are distantly related to bacterial ferritins which assemble 24 monomers, each of which have a four-helix bundle with a fifth shorter helix at the C terminus and a diiron (ferroxidase) center. Ferritins contain a center where oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical
Probab=34.32 E-value=99 Score=20.33 Aligned_cols=30 Identities=17% Similarity=0.273 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 034704 24 LQQMQSRFQTMSESIIAKIDEMGSRIDELE 53 (86)
Q Consensus 24 LqQmQ~kFqtmS~~I~~RiDeMgsRIDdLE 53 (86)
+..+...|+..+.....-+|.++.||-.|-
T Consensus 37 f~~l~~~~~~~~~ee~~Had~laEri~~lG 66 (148)
T cd01052 37 GEGIKEELEEAAEEELNHAELLAERIYELG 66 (148)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 446778888888888888888888887774
No 159
>PF10280 Med11: Mediator complex protein ; InterPro: IPR019404 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med11 of the Mediator complex []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3R84_S 3RJ1_O.
Probab=34.10 E-value=38 Score=23.00 Aligned_cols=18 Identities=22% Similarity=0.481 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHHhhcc
Q 034704 48 RIDELEQSINDLRSEMGI 65 (86)
Q Consensus 48 RIDdLEksI~dLm~qaG~ 65 (86)
+|++.|+.|..||..||-
T Consensus 7 ~L~~Idk~I~~lL~~A~~ 24 (117)
T PF10280_consen 7 QLNEIDKKIVSLLQHAGQ 24 (117)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 467788999999988874
No 160
>PF08653 DASH_Dam1: DASH complex subunit Dam1; InterPro: IPR013962 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=33.94 E-value=66 Score=20.15 Aligned_cols=10 Identities=30% Similarity=0.700 Sum_probs=4.6
Q ss_pred HHHHHHHHHH
Q 034704 29 SRFQTMSESI 38 (86)
Q Consensus 29 ~kFqtmS~~I 38 (86)
.+|..++|.+
T Consensus 5 ~~f~eL~D~~ 14 (58)
T PF08653_consen 5 PQFAELSDSM 14 (58)
T ss_pred HHHHHHHHHH
Confidence 3444444444
No 161
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=33.70 E-value=1.4e+02 Score=19.70 Aligned_cols=37 Identities=22% Similarity=0.351 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 034704 21 QNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRS 61 (86)
Q Consensus 21 q~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm~ 61 (86)
..++++++...+. +..+++.+...|.+++..+..|-.
T Consensus 5 ~~~~~~l~~~i~~----l~~~~~~l~~~~~e~~~~~~~l~~ 41 (129)
T cd00584 5 AAQLQVLQQEIEE----LQQELARLNEAIAEYEQAKETLET 41 (129)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444443 455566677777777777766644
No 162
>PRK10947 global DNA-binding transcriptional dual regulator H-NS; Provisional
Probab=33.56 E-value=1.8e+02 Score=20.74 Aligned_cols=18 Identities=11% Similarity=0.230 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 034704 23 LLQQMQSRFQTMSESIIA 40 (86)
Q Consensus 23 LLqQmQ~kFqtmS~~I~~ 40 (86)
.|+.|.+||..+-.+--.
T Consensus 25 ~Lee~~ekl~~vv~er~e 42 (135)
T PRK10947 25 TLEEMLEKLEVVVNERRE 42 (135)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 378888888876554433
No 163
>PF05537 DUF759: Borrelia burgdorferi protein of unknown function (DUF759); InterPro: IPR008478 This entry consists of several uncharacterised proteins from Borrelia species including Borrelia burgdorferi and Borrelia garinii.
Probab=33.54 E-value=1.4e+02 Score=25.52 Aligned_cols=32 Identities=22% Similarity=0.389 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCC
Q 034704 49 IDELEQSINDLRSEMGIEGSASPSLPSKSNDGP 81 (86)
Q Consensus 49 IDdLEksI~dLm~qaG~e~~~~~~~~~~~~~~~ 81 (86)
.+.|=..|...|-..|.+. |.+-+|++.++-|
T Consensus 398 F~kLk~~lp~wm~~~~~~~-~~~~~~~~~~~~~ 429 (431)
T PF05537_consen 398 FDKLKSMLPKWMGGTGNDN-PKPQEEPKNQDCP 429 (431)
T ss_pred HHHHHHHhHHhhCCCCcCC-CCCCCCCCCCCCC
Confidence 6789999999999999988 4444455555444
No 164
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=33.32 E-value=1.2e+02 Score=18.84 Aligned_cols=16 Identities=13% Similarity=0.447 Sum_probs=6.0
Q ss_pred HHHhhhHHHHHHHHHH
Q 034704 43 DEMGSRIDELEQSIND 58 (86)
Q Consensus 43 DeMgsRIDdLEksI~d 58 (86)
+.+..++..|++.+.+
T Consensus 79 ~~l~~~~~~l~~~l~~ 94 (106)
T PF01920_consen 79 KKLEKQLKYLEKKLKE 94 (106)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 165
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=33.20 E-value=86 Score=22.40 Aligned_cols=28 Identities=18% Similarity=0.489 Sum_probs=14.2
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhc
Q 034704 37 SIIAKIDEMGSRIDELEQSINDLRSEMG 64 (86)
Q Consensus 37 ~I~~RiDeMgsRIDdLEksI~dLm~qaG 64 (86)
.|+..++.+..+|..|=+.|.+|.+++|
T Consensus 5 eiFd~v~~le~~l~~l~~el~~lK~~l~ 32 (114)
T COG4467 5 EIFDQVDNLEEQLGVLLAELGGLKQHLG 32 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555555544444443
No 166
>PRK15374 pathogenicity island 1 effector protein SipB; Provisional
Probab=33.18 E-value=2.6e+02 Score=25.01 Aligned_cols=34 Identities=24% Similarity=0.319 Sum_probs=26.2
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhccCCCCCCC
Q 034704 39 IAKIDEMGSRIDELEQSINDLRSEMGIEGSASPS 72 (86)
Q Consensus 39 ~~RiDeMgsRIDdLEksI~dLm~qaG~e~~~~~~ 72 (86)
+.+.|.--+++|++|+.+..|-.++--..|-+|.
T Consensus 147 ~~~~~~Aq~~l~~aq~~l~~lq~~a~~~~P~sp~ 180 (593)
T PRK15374 147 IKKTDTAKSVYDAAEKKLTQAQNKLQSLDPADPG 180 (593)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCChh
Confidence 3456666788999999999998888777666654
No 167
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=32.89 E-value=1.4e+02 Score=23.01 Aligned_cols=36 Identities=28% Similarity=0.430 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 034704 24 LQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDL 59 (86)
Q Consensus 24 LqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dL 59 (86)
+..+++.|..+...|-.-|.+|.+-|.+-.+=|..|
T Consensus 165 I~sL~~e~~~~~~di~~Li~~m~~sI~ead~FI~~l 200 (201)
T PF11172_consen 165 IASLQGEFSSIESDISQLIKEMERSIAEADAFIASL 200 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 457888999999999998999988888887777654
No 168
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=32.10 E-value=1.3e+02 Score=18.66 Aligned_cols=34 Identities=15% Similarity=0.411 Sum_probs=17.2
Q ss_pred HHHHHHHH---HHHHHHhhhHHHHHHHHHHHHHhhcc
Q 034704 32 QTMSESII---AKIDEMGSRIDELEQSINDLRSEMGI 65 (86)
Q Consensus 32 qtmS~~I~---~RiDeMgsRIDdLEksI~dLm~qaG~ 65 (86)
+.+++.|+ .+||.+-.+|..|...|.++-...+.
T Consensus 21 e~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~~~~~ 57 (69)
T PF04102_consen 21 EELNDVVTEQQRQIDRLQRQLRLLRERLRELEDPSGS 57 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC
Confidence 34444444 45889999999999999998755443
No 169
>PRK05658 RNA polymerase sigma factor RpoD; Validated
Probab=32.09 E-value=2.3e+02 Score=24.12 Aligned_cols=32 Identities=9% Similarity=0.344 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhccC
Q 034704 35 SESIIAKIDEMGSRIDELEQSINDLRSEMGIE 66 (86)
Q Consensus 35 S~~I~~RiDeMgsRIDdLEksI~dLm~qaG~e 66 (86)
-+.|+.+|-++..||..+|+.|..+...+|+.
T Consensus 273 id~Lv~~lr~~~~rIr~~Er~i~~~~~~~~m~ 304 (619)
T PRK05658 273 IDELVEQLRDINKRVRGQERELLRLVERLKMP 304 (619)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 34566777888999999999999877777764
No 170
>KOG1106 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.54 E-value=1.7e+02 Score=22.22 Aligned_cols=33 Identities=21% Similarity=0.463 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHH--H--HHHHhhhHHHHHHHHH
Q 034704 25 QQMQSRFQTMSESIIA--K--IDEMGSRIDELEQSIN 57 (86)
Q Consensus 25 qQmQ~kFqtmS~~I~~--R--iDeMgsRIDdLEksI~ 57 (86)
+-+-.|+....+.+.+ . ...-..|+|++|++|-
T Consensus 124 e~l~~R~~~~l~~~~s~~~~~~s~~~~rLD~~E~~l~ 160 (177)
T KOG1106|consen 124 ETLRSRVREILDSSLSATNTQTSKFVERLDEMERKLF 160 (177)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 5555667666666665 2 3556778888888874
No 171
>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.50 E-value=1.1e+02 Score=24.26 Aligned_cols=21 Identities=29% Similarity=0.476 Sum_probs=18.0
Q ss_pred HHHHhhhHHHHHHHHHHHHHh
Q 034704 42 IDEMGSRIDELEQSINDLRSE 62 (86)
Q Consensus 42 iDeMgsRIDdLEksI~dLm~q 62 (86)
|--|+.+|.+||+.|.-|-..
T Consensus 57 Lk~a~~~i~eLe~ri~~lq~~ 77 (233)
T COG3416 57 LKKASTQIKELEKRIAILQAG 77 (233)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 677899999999999988663
No 172
>COG3159 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.45 E-value=42 Score=26.23 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=19.8
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhcc
Q 034704 42 IDEMGSRIDELEQSINDLRSEMGI 65 (86)
Q Consensus 42 iDeMgsRIDdLEksI~dLm~qaG~ 65 (86)
++-.-.||+.||..|+.||..|..
T Consensus 47 l~r~R~~~~~Le~~l~~L~~~A~~ 70 (218)
T COG3159 47 LARLRNRIRELEEELAALMENARA 70 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445567999999999999998864
No 173
>PRK06665 flgK flagellar hook-associated protein FlgK; Validated
Probab=31.20 E-value=2.7e+02 Score=24.09 Aligned_cols=42 Identities=12% Similarity=0.219 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcc
Q 034704 24 LQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEMGI 65 (86)
Q Consensus 24 LqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm~qaG~ 65 (86)
|+++...++.+-..+-.+|+..-.+|+.|=+.|++|-.+...
T Consensus 155 ~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~qIa~LN~qI~~ 196 (627)
T PRK06665 155 IHDRYRSLERIRDMANDEIEITVEEINNILRNIADLNEQIVK 196 (627)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566667777777888888888888999999999999887653
No 174
>PLN02554 UDP-glycosyltransferase family protein
Probab=30.91 E-value=2.1e+02 Score=23.44 Aligned_cols=51 Identities=20% Similarity=0.302 Sum_probs=44.1
Q ss_pred CCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 034704 11 QNTADMTAFVQNLL---QQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRS 61 (86)
Q Consensus 11 ~s~~dLT~~Vq~LL---qQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm~ 61 (86)
-+.++|...|..+| ..+..|-..++..+-..+.+-|+--.+|++=|.++..
T Consensus 425 ~~~e~l~~av~~vm~~~~~~r~~a~~l~~~~~~av~~gGss~~~l~~lv~~~~~ 478 (481)
T PLN02554 425 VTAEEIERGIRCLMEQDSDVRKRVKEMSEKCHVALMDGGSSHTALKKFIQDVTK 478 (481)
T ss_pred EcHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHh
Confidence 36889999999999 4788899999999999999999988888888887765
No 175
>PHA03386 P10 fibrous body protein; Provisional
Probab=30.69 E-value=1.8e+02 Score=20.07 Aligned_cols=39 Identities=18% Similarity=0.386 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccC
Q 034704 20 VQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEMGIE 66 (86)
Q Consensus 20 Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm~qaG~e 66 (86)
+|.-+..++.. ..++|..+..+++|...|+++-.=.+.+
T Consensus 24 LQ~qV~dv~~n--------~~~LDa~~~qL~~l~tkV~~Iq~iLn~d 62 (94)
T PHA03386 24 LQTQLNGLEED--------SQPLDGLPAQLTELDTKVSDIQSILTGD 62 (94)
T ss_pred HHHHHHHHHhc--------chhhhhHHHHHHHHHHHHHHHHHhcCcc
Confidence 44445555554 3446666666677666555444433333
No 176
>COG3609 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription]
Probab=30.50 E-value=1e+02 Score=20.06 Aligned_cols=47 Identities=21% Similarity=0.383 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 034704 13 TADMTAFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRS 61 (86)
Q Consensus 13 ~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm~ 61 (86)
+..+..+|+.|.+. .+|...|+-|=.-|-.+-.+...-+..+..+..
T Consensus 10 p~~~~~~i~~lV~~--G~y~s~SeviR~alr~l~~~~~~~~~~~~~~~~ 56 (89)
T COG3609 10 PEQLVEFIDELVES--GRYKSRSEVIRAALRLLLEKRVDEEARLRALRE 56 (89)
T ss_pred CHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899998888 999999999998888888877777777766664
No 177
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=30.37 E-value=85 Score=24.26 Aligned_cols=26 Identities=15% Similarity=0.333 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034704 18 AFVQNLLQQMQSRFQTMSESIIAKID 43 (86)
Q Consensus 18 ~~Vq~LLqQmQ~kFqtmS~~I~~RiD 43 (86)
.++-.||..+.++|-..-++|-.+++
T Consensus 139 ~l~~~lld~i~d~~~~~le~i~~~~~ 164 (322)
T COG0598 139 ELLYALLDAIVDNYFPVLEQIEDELE 164 (322)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34444555555555544444433333
No 178
>smart00190 IL4_13 Interleukins 4 and 13. Interleukins-4 and -13 are cytokines involved in inflammatory and immune responses. IL-4 stimulates B and T cells.
Probab=30.18 E-value=75 Score=23.18 Aligned_cols=18 Identities=17% Similarity=0.521 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 034704 15 DMTAFVQNLLQQMQSRFQ 32 (86)
Q Consensus 15 dLT~~Vq~LLqQmQ~kFq 32 (86)
+|..|++.|+.-||.||-
T Consensus 117 tl~dFL~~Lk~~m~~ky~ 134 (138)
T smart00190 117 TLADFLERLKSIMREKYS 134 (138)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 899999999999999995
No 179
>COG3599 DivIVA Cell division initiation protein [Cell division and chromosome partitioning]
Probab=30.05 E-value=1.8e+02 Score=22.22 Aligned_cols=37 Identities=16% Similarity=0.428 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 034704 19 FVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDL 59 (86)
Q Consensus 19 ~Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dL 59 (86)
-|+.+|.++...|..+- .-+-+.-.||++|++.|...
T Consensus 27 EVdeFLD~V~~dye~~l----~e~~~l~~~i~~L~~~l~~~ 63 (212)
T COG3599 27 EVDEFLDDVIDDYEQLL----DENEDLEDEIDELKEELKEA 63 (212)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHh
Confidence 47778888888887754 33445555666666666543
No 180
>PF15249 GLTSCR1: Glioma tumor suppressor candidate region
Probab=30.01 E-value=1e+02 Score=20.56 Aligned_cols=26 Identities=15% Similarity=0.441 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHH
Q 034704 27 MQSRFQTMSESIIAKIDEMGSRIDEL 52 (86)
Q Consensus 27 mQ~kFqtmS~~I~~RiDeMgsRIDdL 52 (86)
..+.|.+.+.+++.|...|..|...|
T Consensus 53 ~d~~~e~~~~~~~~~~~~~~~k~~~l 78 (109)
T PF15249_consen 53 WDEEFETVAAELLKRFEKMLNKYRRL 78 (109)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678888888888888888888765
No 181
>PHA03395 p10 fibrous body protein; Provisional
Probab=29.95 E-value=1.8e+02 Score=19.76 Aligned_cols=56 Identities=13% Similarity=0.350 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCCCCCCCCCC
Q 034704 19 FVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEMGIEGSASPSLPS 75 (86)
Q Consensus 19 ~Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm~qaG~e~~~~~~~~~ 75 (86)
.+|+-+..++..|..+ +.|-+++|..+..++.+...++.+-.=...+-|+-|-.|.
T Consensus 22 alQ~~V~~l~~nlpdv-~~l~~kLdaq~~~Ltti~tkv~~I~diLnpdiPdlP~~~~ 77 (87)
T PHA03395 22 ALQAAVDDVRANLPDV-TEINEKLDAQSASLDTISSAVDNITDILNPDIPDVPDVPV 77 (87)
T ss_pred HHHHHHHHHHhcCCcH-HHHHHHHHhHHHHHHHHHHHHHHHHHccCCCCCCCCCCCC
Confidence 3445555666666554 3577788888888888886665544444444444444333
No 182
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=29.80 E-value=1.6e+02 Score=18.97 Aligned_cols=24 Identities=8% Similarity=0.379 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHH
Q 034704 34 MSESIIAKIDEMGSRIDELEQSIN 57 (86)
Q Consensus 34 mS~~I~~RiDeMgsRIDdLEksI~ 57 (86)
....+..-|.+.-.-|+|||++|.
T Consensus 40 ~~~eL~~~l~~ie~~L~DL~~aV~ 63 (97)
T PF09177_consen 40 LKRELRNALQSIEWDLEDLEEAVR 63 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555556666666554
No 183
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=29.60 E-value=2.9e+02 Score=25.60 Aligned_cols=53 Identities=23% Similarity=0.349 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCC
Q 034704 15 DMTAFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEMGIEG 67 (86)
Q Consensus 15 dLT~~Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm~qaG~e~ 67 (86)
++.+..+.+...+..+-..+..+|-.+-.+...++++||+....=+...||+.
T Consensus 718 e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~~~~~~le~~~~~eL~~~GvD~ 770 (1201)
T PF12128_consen 718 ELKAQWQELEAELDEQIEQIKQEIAAAKQEAKEQLKELEQQYNQELAGKGVDP 770 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 44556666777777777788888888888888888888888887778888874
No 184
>PF11101 DUF2884: Protein of unknown function (DUF2884); InterPro: IPR021307 Some members in this bacterial family of proteins are annotated as YggN which currently has no known function.
Probab=29.41 E-value=2.5e+02 Score=21.11 Aligned_cols=47 Identities=19% Similarity=0.374 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHH-----HHHHHHhhhHHHHHHHHHHHHH
Q 034704 15 DMTAFVQNLLQQ-MQSRFQTMSESII-----AKIDEMGSRIDELEQSINDLRS 61 (86)
Q Consensus 15 dLT~~Vq~LLqQ-mQ~kFqtmS~~I~-----~RiDeMgsRIDdLEksI~dLm~ 61 (86)
|+-+.++.+.++ |-.=|..|+.+++ .||.+|+.|++.|-..|..=|.
T Consensus 136 e~e~~~e~lv~~s~g~i~~~l~~~m~~~~G~~~l~~~~~~m~~l~~~ie~~~~ 188 (229)
T PF11101_consen 136 EFEQAIEQLVQESMGSILQALGNEMGSSEGDQNLQAFEQRMEGLQQQIEQEME 188 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 333334433332 3334777777774 3566777777766666665443
No 185
>PRK07737 fliD flagellar capping protein; Validated
Probab=29.40 E-value=3e+02 Score=23.06 Aligned_cols=22 Identities=14% Similarity=0.483 Sum_probs=13.1
Q ss_pred HHHHHHHHhhhHHHHHHHHHHH
Q 034704 38 IIAKIDEMGSRIDELEQSINDL 59 (86)
Q Consensus 38 I~~RiDeMgsRIDdLEksI~dL 59 (86)
|-.+|+.+..||++||..|..+
T Consensus 446 l~~~i~~l~~~i~~~~~rl~~~ 467 (501)
T PRK07737 446 IGKDLNQIETQIDRFQDRLKQI 467 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3345666666666666666554
No 186
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=29.16 E-value=2.3e+02 Score=20.59 Aligned_cols=52 Identities=8% Similarity=0.173 Sum_probs=40.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 034704 12 NTADMTAFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEM 63 (86)
Q Consensus 12 s~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm~qa 63 (86)
++.-+..+++++-+.|...+-.=.+.+-.+....-.||++|.+.+.+.+...
T Consensus 97 dp~~~~~~~~~Ia~~L~~~~P~~~~~y~~N~~~~~~~L~~l~~~~~~~~~~~ 148 (256)
T PF01297_consen 97 DPENAKKMAEAIADALSELDPANKDYYEKNAEKYLKELDELDAEIKEKLAKL 148 (256)
T ss_dssp SHHHHHHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4556667777777777777766677788888999999999999988887754
No 187
>PRK00182 tatB sec-independent translocase; Provisional
Probab=29.10 E-value=2e+02 Score=21.35 Aligned_cols=35 Identities=14% Similarity=0.325 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHHH
Q 034704 25 QQMQSRFQTMSESIIAKI-DEMGSRIDELEQSINDL 59 (86)
Q Consensus 25 qQmQ~kFqtmS~~I~~Ri-DeMgsRIDdLEksI~dL 59 (86)
-.+-.+|..+....-..+ +|+|..+++|.+.|.+|
T Consensus 34 g~~ir~~R~~~~~~k~el~~Elg~e~~elrk~l~~l 69 (160)
T PRK00182 34 RAALLAARTAINNAKQQLDGDFGEEFDEFRKPLNQI 69 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344456666666666666 57788889998877764
No 188
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=29.10 E-value=2e+02 Score=20.02 Aligned_cols=38 Identities=18% Similarity=0.511 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 034704 13 TADMTAFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDE 51 (86)
Q Consensus 13 ~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDd 51 (86)
+++|-.--......+. .|++++..++.-++..+.+|+.
T Consensus 22 t~~Lk~ec~~F~~ki~-~F~~iv~~~~~~~~~~A~~VE~ 59 (120)
T PF14931_consen 22 TQELKEECKEFVEKIS-EFQKIVKGFIEILDELAKRVEN 59 (120)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455544444555554 4999999999999999998864
No 189
>COG2960 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.04 E-value=2.1e+02 Score=20.12 Aligned_cols=40 Identities=18% Similarity=0.432 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh---------------hhHHHHHHHHHHHHHhhc
Q 034704 25 QQMQSRFQTMSESIIAKIDEMG---------------SRIDELEQSINDLRSEMG 64 (86)
Q Consensus 25 qQmQ~kFqtmS~~I~~RiDeMg---------------sRIDdLEksI~dLm~qaG 64 (86)
..++.+|-.+-...+.|+|=.+ .+++.||..|..|=...-
T Consensus 36 ~evE~~~r~~~q~~lnkLDlVsREEFdvq~qvl~rtR~kl~~Leari~~LEarl~ 90 (103)
T COG2960 36 AEVEKAFRAQLQRQLNKLDLVSREEFDVQRQVLLRTREKLAALEARIEELEARLA 90 (103)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445555555555555555433 356667777766655443
No 190
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=29.00 E-value=3.2e+02 Score=22.34 Aligned_cols=44 Identities=16% Similarity=0.314 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhhhHHHHHHHHHHH
Q 034704 16 MTAFVQNLLQQMQSRFQTMSESI-----IAKIDEMGSRIDELEQSINDL 59 (86)
Q Consensus 16 LT~~Vq~LLqQmQ~kFqtmS~~I-----~~RiDeMgsRIDdLEksI~dL 59 (86)
|...+++.|++-+.+|+.+...+ ..+|.....|++.|.+.+...
T Consensus 316 L~~a~~~~L~~k~~rL~~L~~rL~aLSPl~~~~~~~~~l~~~~~~l~~~ 364 (432)
T TIGR00237 316 KQAALNKQLERTRQKKTRLTKRLTQTNPSPQILRAQTRTEQLNRRLNAL 364 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555444433 234555555555555554443
No 191
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=28.87 E-value=1.6e+02 Score=18.83 Aligned_cols=49 Identities=16% Similarity=0.398 Sum_probs=28.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 034704 9 PKQNTADMTAFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSE 62 (86)
Q Consensus 9 ~~~s~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm~q 62 (86)
++.++.|+...+.. +..||+.+=. .+..+.+|+.-+.+-|..|..|-.+
T Consensus 19 ~~~~~kd~~~~~~~----lk~Klq~ar~-~i~~lpgi~~s~eeq~~~i~~Le~~ 67 (83)
T PF07544_consen 19 PPLSSKDLDTATGS----LKHKLQKARA-AIRELPGIDRSVEEQEEEIEELEEQ 67 (83)
T ss_pred CCCCHHHHHHHHHH----HHHHHHHHHH-HHHhCCCccCCHHHHHHHHHHHHHH
Confidence 66677777666555 6677776533 3445555655555555555555433
No 192
>PF01420 Methylase_S: Type I restriction modification DNA specificity domain; InterPro: IPR000055 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type I restriction endonucleases are components of prokaryotic DNA restriction-modification mechanisms that protects the organism against invading foreign DNA. Type I enzymes have three different subunits subunits - M (modification), S (specificity) and R (restriction) - that form multifunctional enzymes with restriction (3.1.21.3 from EC), methylase (2.1.1.72 from EC) and ATPase activities [, ]. The S subunit is required for both restriction and modification and is responsible for recognition of the DNA sequence specific for the system. The M subunit is necessary for modification, and the R subunit is required for restriction. These enzymes use S-Adenosyl-L-methionine (AdoMet) as the methyl group donor in the methylation reaction, and have a requirement for ATP. They recognise asymmetric DNA sequences split into two domains of specific sequence, one 3-4 bp long and another 4-5 bp long, separated by a nonspecific spacer 6-8 bp in length. Cleavage occurs a considerable distance from the recognition sites, rarely less than 400 bp away and up to 7000 bp away. Adenosyl residues are methylated, one on each strand of the recognition sequence. These enzymes are widespread in eubacteria and archaea. In enteric bacteria they have been subdivide into four families: types IA, IB, IC and ID. This entry represents the S subunit of type I restriction endonucleases (3.1.21.3 from EC). The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence: when the target site is unmodified, the DNA is cut; when the target site is hemi-methylated, the complex acts as a maintenance methyltransferase to modify the DNA, methylating both strands []. Most of the proteins in this family have two copies of the domain.; GO: 0003677 DNA binding, 0006304 DNA modification; PDB: 1YF2_B 2Y7H_A 2Y7C_A 3OKG_A 1YDX_A.
Probab=28.86 E-value=1.4e+02 Score=18.92 Aligned_cols=27 Identities=22% Similarity=0.276 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 034704 35 SESIIAKIDEMGSRIDELEQSINDLRSE 62 (86)
Q Consensus 35 S~~I~~RiDeMgsRIDdLEksI~dLm~q 62 (86)
-..|+..++.+-+ .++|++.+.+.+.|
T Consensus 141 Q~~i~~~l~~~~~-~~~l~~~~~~~l~~ 167 (167)
T PF01420_consen 141 QQKIVEILDQLDK-KIALEKKIIAELEE 167 (167)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHhCC
Confidence 3456667777777 66777777666543
No 193
>PHA02604 rI.-1 hypothetical protein; Provisional
Probab=28.82 E-value=2.1e+02 Score=20.76 Aligned_cols=36 Identities=19% Similarity=0.434 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 034704 15 DMTAFVQNLLQQMQSRFQTMSESIIAKIDEMGSRID 50 (86)
Q Consensus 15 dLT~~Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRID 50 (86)
+-+.+|++||+.-+.-|..+-..+..-+||+-.-++
T Consensus 82 d~~~~l~~~l~~a~~i~~~l~s~L~N~~DdI~~~~~ 117 (126)
T PHA02604 82 DTIAFLDELLQEAEEIYKELPSALQSTLDDITGLCY 117 (126)
T ss_pred CHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 789999999999999999988888888888765444
No 194
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=28.62 E-value=2.3e+02 Score=20.43 Aligned_cols=51 Identities=12% Similarity=0.253 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 034704 13 TADMTAFVQNLLQQMQS--RFQTMSESIIAKIDEMGSRIDELEQSINDLRSEM 63 (86)
Q Consensus 13 ~~dLT~~Vq~LLqQmQ~--kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm~qa 63 (86)
|.++...|+.++....- ....-...+..+++....+|..||+.-.++...|
T Consensus 35 P~~v~~~v~~~~~~~~~~~~~~~~~~~l~~~l~~~~~el~~le~~k~~id~~A 87 (180)
T PF04678_consen 35 PKQVKEAVHRLLPLLNVEEYQNSRERQLRKRLEELRQELAPLEKIKQEIDEKA 87 (180)
T ss_pred HHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777655531 1112223455677888888888887776666554
No 195
>PRK06285 chorismate mutase; Provisional
Probab=28.41 E-value=90 Score=20.31 Aligned_cols=25 Identities=36% Similarity=0.609 Sum_probs=16.2
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHh
Q 034704 38 IIAKIDEMGSRIDELEQSINDLRSE 62 (86)
Q Consensus 38 I~~RiDeMgsRIDdLEksI~dLm~q 62 (86)
+-..|+++=..||++...|-+|+.+
T Consensus 5 ~~~~L~elR~~ID~ID~~iv~Ll~~ 29 (96)
T PRK06285 5 AEKRLNEIRKRIDEIDEQIIDLIAE 29 (96)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777777777666554
No 196
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=28.13 E-value=2.2e+02 Score=20.05 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHH
Q 034704 36 ESIIAKIDEMGSRIDELEQSIND 58 (86)
Q Consensus 36 ~~I~~RiDeMgsRIDdLEksI~d 58 (86)
.+...|+.+.-.+|+++.+++.+
T Consensus 54 ~s~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 54 ASRNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666666666666666665
No 197
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=27.90 E-value=3.1e+02 Score=22.59 Aligned_cols=29 Identities=24% Similarity=0.391 Sum_probs=21.3
Q ss_pred HHHHHHhhh---HHHHHHHHHHHHHhhccCCC
Q 034704 40 AKIDEMGSR---IDELEQSINDLRSEMGIEGS 68 (86)
Q Consensus 40 ~RiDeMgsR---IDdLEksI~dLm~qaG~e~~ 68 (86)
.+++++... |..||..|..|+.+++--+.
T Consensus 112 e~~~e~~~k~~~v~~l~e~I~~~l~~~E~LG~ 143 (319)
T KOG0796|consen 112 ERSEEAARKAEKVHELEEKIGKLLEKAEELGE 143 (319)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455555555 99999999999998765443
No 198
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=27.87 E-value=88 Score=25.48 Aligned_cols=27 Identities=15% Similarity=0.441 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 034704 36 ESIIAKIDEMGSRIDELEQSINDLRSE 62 (86)
Q Consensus 36 ~~I~~RiDeMgsRIDdLEksI~dLm~q 62 (86)
+.+-.||.|.-+|+..|+|.|.+|-.+
T Consensus 292 De~~krL~ELrR~vr~L~k~l~~l~~~ 318 (320)
T TIGR01834 292 DEAHQRIQQLRREVKSLKKRLGDLEAN 318 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 678889999999999999999988654
No 199
>KOG4057 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.85 E-value=50 Score=25.09 Aligned_cols=17 Identities=18% Similarity=0.401 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHHHhhc
Q 034704 48 RIDELEQSINDLRSEMG 64 (86)
Q Consensus 48 RIDdLEksI~dLm~qaG 64 (86)
-|+++||+|..+|.-||
T Consensus 13 Al~~iEkeI~~~mq~Ag 29 (180)
T KOG4057|consen 13 ALVTIEKEIDEMMQCAG 29 (180)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 36778888888887776
No 200
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=27.78 E-value=96 Score=19.48 Aligned_cols=21 Identities=33% Similarity=0.536 Sum_probs=15.6
Q ss_pred HHHHhhhHHHHHHHHHHHHHh
Q 034704 42 IDEMGSRIDELEQSINDLRSE 62 (86)
Q Consensus 42 iDeMgsRIDdLEksI~dLm~q 62 (86)
++|+..||-.||..|.-+-+.
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~ 43 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAA 43 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 577788888888888766543
No 201
>PF08020 DUF1706: Protein of unknown function (DUF1706) ; InterPro: IPR012550 This family contains many hypothetical proteins from bacteria and yeast.
Probab=27.68 E-value=57 Score=23.74 Aligned_cols=48 Identities=10% Similarity=0.200 Sum_probs=35.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 034704 10 KQNTADMTAFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRS 61 (86)
Q Consensus 10 ~~s~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm~ 61 (86)
|++-+||...++.-.+.|..-|..|++......-+-| ...+|+.|++.
T Consensus 4 p~tK~eLl~ai~~~~~kL~~~~~~ipee~~~~~~~~~----~~d~~~~DvLa 51 (166)
T PF08020_consen 4 PTTKAELLEAIEKNYEKLISEIDSIPEEQKDTPFDFG----GRDRNPRDVLA 51 (166)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCCHHHhcCccccc----cccCCHHHHHH
Confidence 5678888888888888888888888877654333322 67788888764
No 202
>cd01145 TroA_c Periplasmic binding protein TroA_c. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=27.67 E-value=2.3e+02 Score=20.20 Aligned_cols=51 Identities=8% Similarity=0.085 Sum_probs=34.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 034704 12 NTADMTAFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSE 62 (86)
Q Consensus 12 s~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm~q 62 (86)
++.-+..+++++-+.|...+-.=.+.+..+....-.+|++|.+.+.+.+..
T Consensus 113 dp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~l~~ 163 (203)
T cd01145 113 DPNNAPALAKALADALIELDPSEQEEYKENLRVFLAKLNKLLREWERQFEG 163 (203)
T ss_pred CHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345555666666666665555555667777778888888888888777664
No 203
>PRK08471 flgK flagellar hook-associated protein FlgK; Validated
Probab=27.54 E-value=3.4e+02 Score=23.51 Aligned_cols=42 Identities=12% Similarity=0.334 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcc
Q 034704 24 LQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEMGI 65 (86)
Q Consensus 24 LqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm~qaG~ 65 (86)
++++...++.+-..|-..|...-.+|+.|=++|++|-.+.-.
T Consensus 148 ~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~~Ia~LN~qI~~ 189 (613)
T PRK08471 148 IKDTRERLDTLQKKVNEELKVTVDEINSLGKQIAEINKQIKE 189 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555666677777788888999999999999999999887643
No 204
>PRK09546 zntB zinc transporter; Reviewed
Probab=27.48 E-value=1.1e+02 Score=23.46 Aligned_cols=32 Identities=9% Similarity=0.261 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 034704 18 AFVQNLLQQMQSRFQTMSESIIAKIDEMGSRI 49 (86)
Q Consensus 18 ~~Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRI 49 (86)
.++-.+|..+-++|...-+.|-.++|++-.+|
T Consensus 142 ~ll~~lld~ivd~~~~~l~~i~~~ld~lE~~l 173 (324)
T PRK09546 142 GWLVDVCDALTDHASEFIEELHDKIIDLEDNL 173 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777777666666665555554433
No 205
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=27.36 E-value=3e+02 Score=21.38 Aligned_cols=42 Identities=17% Similarity=0.362 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 034704 15 DMTAFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSIN 57 (86)
Q Consensus 15 dLT~~Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~ 57 (86)
.+..-|..+.++....|..+..+| ..|.+...+|..|-+.+.
T Consensus 17 ~~~~~l~~~~~~~~~~~~~L~~~l-~~l~~~~~~~~~l~~~~~ 58 (304)
T PF02646_consen 17 KFEKRLEESFEQRSEEFGSLKEQL-KQLSEANGEIQQLSQEAS 58 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhHHHHHHHHHH
Confidence 334444444445555555555554 233333333333333333
No 206
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=27.33 E-value=2e+02 Score=19.34 Aligned_cols=28 Identities=29% Similarity=0.506 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 034704 36 ESIIAKIDEMGSRIDELEQSINDLRSEM 63 (86)
Q Consensus 36 ~~I~~RiDeMgsRIDdLEksI~dLm~qa 63 (86)
..|-..||.+.+++|.||+.-..|..+.
T Consensus 29 ~~ins~LD~Lns~LD~LE~rnD~l~~~L 56 (83)
T PF03670_consen 29 AAINSMLDQLNSCLDHLEQRNDHLHAQL 56 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 4577777888888888888777776654
No 207
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=27.14 E-value=1.8e+02 Score=28.34 Aligned_cols=45 Identities=18% Similarity=0.330 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 034704 17 TAFVQNLLQQMQSRFQTM-----------SESIIAKIDEMGSRIDELEQSINDLRS 61 (86)
Q Consensus 17 T~~Vq~LLqQmQ~kFqtm-----------S~~I~~RiDeMgsRIDdLEksI~dLm~ 61 (86)
..+|++++.++..++.+- .+.|..|+-||..|+--|+.+|+++=+
T Consensus 1121 e~~vE~~~r~~~~~~~~s~~Erir~t~~rvd~~~~~l~e~~~r~~~lk~~v~~~~~ 1176 (1381)
T KOG3614|consen 1121 EVCVENFLRKREMEQNSSTEERIRRTANRVDLILNRLIELEQREKTLKDSVQNSET 1176 (1381)
T ss_pred HHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999888755 455666666777777777766665533
No 208
>PF15469 Sec5: Exocyst complex component Sec5
Probab=27.09 E-value=2.2e+02 Score=19.85 Aligned_cols=49 Identities=18% Similarity=0.268 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCC
Q 034704 18 AFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEMGIEG 67 (86)
Q Consensus 18 ~~Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm~qaG~e~ 67 (86)
.+++.++.+.+..-+..-..+..||.++..-.++.++-|.-|+ +.|+++
T Consensus 124 ~vf~~v~~eve~ii~~~r~~l~~~L~~~~~s~~~~~~~i~~Ll-~L~~~~ 172 (182)
T PF15469_consen 124 PVFQKVWSEVEKIIEEFREKLWEKLLSPPSSQEEFLKLIRKLL-ELNVEE 172 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH-hCCCCC
Confidence 4667778888888888888999999999999999999995555 455543
No 209
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=27.08 E-value=3.3e+02 Score=21.88 Aligned_cols=39 Identities=13% Similarity=0.297 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 034704 20 VQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSIND 58 (86)
Q Consensus 20 Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~d 58 (86)
+....+.|+.-+...-..+-.||.+|-.-.++||-.+..
T Consensus 231 l~~~~~dl~~Q~~~vn~al~~Ri~et~~ak~~Le~ql~~ 269 (384)
T PF03148_consen 231 LEQTANDLRAQADAVNAALRKRIHETQEAKNELEWQLKK 269 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344455556666666666655554444444443333
No 210
>KOG2336 consensus Molybdopterin biosynthesis-related protein [Coenzyme transport and metabolism]
Probab=27.03 E-value=1.1e+02 Score=25.80 Aligned_cols=28 Identities=25% Similarity=0.490 Sum_probs=23.1
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhccCCCC
Q 034704 42 IDEMGSRIDELEQSINDLRSEMGIEGSA 69 (86)
Q Consensus 42 iDeMgsRIDdLEksI~dLm~qaG~e~~~ 69 (86)
++-|..+||.|++.|.||-...-.+...
T Consensus 5 ~~~l~~~ld~l~~~l~d~~~~~~~e~~~ 32 (422)
T KOG2336|consen 5 FKALLDDLDVLQKRLSDLKLELKLESSS 32 (422)
T ss_pred HHHHHHHHHHHHHHhhhhhhhccccccc
Confidence 6778899999999999999887766443
No 211
>PF14071 YlbD_coat: Putative coat protein
Probab=26.97 E-value=1.2e+02 Score=21.76 Aligned_cols=26 Identities=19% Similarity=0.420 Sum_probs=13.4
Q ss_pred HHHhhhHHHHHH---HHHHHHHhhccCCC
Q 034704 43 DEMGSRIDELEQ---SINDLRSEMGIEGS 68 (86)
Q Consensus 43 DeMgsRIDdLEk---sI~dLm~qaG~e~~ 68 (86)
++|...|+.+.+ +|..|+.+..-...
T Consensus 80 nq~q~hl~~~sqai~~vQ~~l~qFq~~~~ 108 (124)
T PF14071_consen 80 NQMQKHLNNVSQAIGSVQQVLSQFQGNGQ 108 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 444444444444 34566776654433
No 212
>PF05842 Euplotes_phero: Euplotes octocarinatus mating pheromone protein; InterPro: IPR008612 This family consists of several mating pheromone proteins from Euplotes octocarinatus. Cells of the ten mating types of the ciliate E. octocarinatus communicate by pheromones before they enter conjugation. The pheromones induce homotypic pairing when applied to mating types that do not secrete the same pheromone(s). Heterotypic pairs (i.e., those between cells of different mating types) are formed only when both mating types in a mixture secrete a pheromone that the other does not. The genetics of mating types is based on four codominant mating type alleles, each allele determining production of a different pheromone. The pheromones not only induce pair formation but also attract cells [].; GO: 0005186 pheromone activity, 0007154 cell communication, 0005576 extracellular region
Probab=26.96 E-value=49 Score=24.16 Aligned_cols=18 Identities=50% Similarity=0.654 Sum_probs=12.4
Q ss_pred HHHHHHHHH-HHHHHHHHH
Q 034704 16 MTAFVQNLL-QQMQSRFQT 33 (86)
Q Consensus 16 LT~~Vq~LL-qQmQ~kFqt 33 (86)
||.-|.+=| .|+|+|||.
T Consensus 3 MTSKVNTKLQSqiqSKfqS 21 (134)
T PF05842_consen 3 MTSKVNTKLQSQIQSKFQS 21 (134)
T ss_pred chhhhhHHHHHHHHHHHhh
Confidence 455565544 589999984
No 213
>TIGR01803 CM-like chorismate mutase related enzymes. This subfamily includes two enzymes which are variants on the mechanism of chorismate mutase and are likely to have evolved from an ancestral chorismate mutase enzyme. 4-amino-4-deoxy-chorismate mutase produces amino-deoxy-prephenate which is subsequently converted to para-dimethylamino-phenylalanine, a component of the natural product pristinamycin. Isochorismate-pyruvate lyase presumably catalyzes the same type of 2+2+2 cyclo-rearrangement as chorismate mutase, but acting on isochorismate, this results in two broken bonds instead of one broken and one made. The product of this reaction is salicylate (2-hydroxy-benzoate) which is also incorporated into various natural products.
Probab=26.91 E-value=72 Score=20.09 Aligned_cols=20 Identities=10% Similarity=0.277 Sum_probs=14.8
Q ss_pred HHHhhhHHHHHHHHHHHHHh
Q 034704 43 DEMGSRIDELEQSINDLRSE 62 (86)
Q Consensus 43 DeMgsRIDdLEksI~dLm~q 62 (86)
+++=++||.|-..|-+|+.+
T Consensus 2 ~~lR~~ID~ID~~lv~Ll~~ 21 (82)
T TIGR01803 2 ADIREAIDRIDLALVQALGR 21 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55667788888888887765
No 214
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=26.91 E-value=3.5e+02 Score=22.07 Aligned_cols=55 Identities=20% Similarity=0.396 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHH--------------HHHHHhhhHHHHHHHHHHHHHh-----hccCCCCCCCCCCC
Q 034704 22 NLLQQMQSRFQTMSESIIA--------------KIDEMGSRIDELEQSINDLRSE-----MGIEGSASPSLPSK 76 (86)
Q Consensus 22 ~LLqQmQ~kFqtmS~~I~~--------------RiDeMgsRIDdLEksI~dLm~q-----aG~e~~~~~~~~~~ 76 (86)
.-+++++.+....|.+|-. ++.++..+|..||+.+.++-.+ ..+-+.+.|..|.-
T Consensus 44 ~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~lPN~~~~~vP~g 117 (418)
T TIGR00414 44 SEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLSIPNIPHESVPVG 117 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCCC
Confidence 3367777777777766632 4455666777777666655443 24556666665543
No 215
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=26.86 E-value=1.5e+02 Score=17.91 Aligned_cols=36 Identities=19% Similarity=0.430 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHhhhHHHHHHHH
Q 034704 21 QNLLQQMQSRFQTMS----ESIIAKIDEMGSRIDELEQSI 56 (86)
Q Consensus 21 q~LLqQmQ~kFqtmS----~~I~~RiDeMgsRIDdLEksI 56 (86)
+++|.||.--.+.+. .++.+||-..-+.++.|.+.+
T Consensus 38 ~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~l 77 (79)
T PF05008_consen 38 EELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKEL 77 (79)
T ss_dssp HHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555554444332 334455555555555555544
No 216
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=26.76 E-value=2e+02 Score=23.07 Aligned_cols=26 Identities=19% Similarity=0.450 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHH
Q 034704 33 TMSESIIAKIDEMGSRIDELEQSIND 58 (86)
Q Consensus 33 tmS~~I~~RiDeMgsRIDdLEksI~d 58 (86)
.|...|-++|+-|+.-++++=++|++
T Consensus 178 ~~a~nidsqLk~l~~dL~~ii~~lN~ 203 (254)
T KOG2196|consen 178 KMAENIDSQLKRLSEDLKQIIKSLNT 203 (254)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 35666666677777666666666554
No 217
>PHA02675 ORF104 fusion protein; Provisional
Probab=26.47 E-value=2.2e+02 Score=19.58 Aligned_cols=39 Identities=31% Similarity=0.497 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 034704 19 FVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRS 61 (86)
Q Consensus 19 ~Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm~ 61 (86)
.|+.=|-.+-..|++ |+..-...+.||+-||+.+.-|..
T Consensus 34 sle~RL~~L~k~~~~----i~~cC~~~~~~L~RLE~H~ETLRk 72 (90)
T PHA02675 34 SVEERLVSLLDSYKT----ITDCCRETGARLDRLERHLETLRE 72 (90)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555566766 455556677788888877766654
No 218
>PF09277 Erythro-docking: Erythronolide synthase, docking; InterPro: IPR015357 Docking domains are found in prokaryotic erythronolide synthase. They adopt a structure consisting of a bundle of four alpha-helices, and mediate homodimerisation of the protein, stabilising the resulting complex []. ; PDB: 1PZQ_A.
Probab=26.38 E-value=40 Score=21.53 Aligned_cols=20 Identities=35% Similarity=0.607 Sum_probs=15.3
Q ss_pred HhhhHHHHHHHHHHHHHhhc
Q 034704 45 MGSRIDELEQSINDLRSEMG 64 (86)
Q Consensus 45 MgsRIDdLEksI~dLm~qaG 64 (86)
.|.|+|.||+-+..|=.+-|
T Consensus 8 v~a~lDrLE~aL~aLpd~dG 27 (58)
T PF09277_consen 8 VGAELDRLEAALLALPDEDG 27 (58)
T ss_dssp THHHHHHHHHHHHHHTTSS-
T ss_pred hhHHHHHHHHHHhcCCcccc
Confidence 57899999999888766544
No 219
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=26.27 E-value=1.7e+02 Score=18.23 Aligned_cols=25 Identities=28% Similarity=0.497 Sum_probs=16.8
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhhc
Q 034704 40 AKIDEMGSRIDELEQSINDLRSEMG 64 (86)
Q Consensus 40 ~RiDeMgsRIDdLEksI~dLm~qaG 64 (86)
.++=+=|.||++|+..-.+|...|.
T Consensus 24 ~~ll~Rge~L~~L~~kt~~L~~~a~ 48 (89)
T PF00957_consen 24 DKLLERGEKLEELEDKTEELSDNAK 48 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCchHHHHHHHHHHHHHHhH
Confidence 3344557778888887777776654
No 220
>PHA02557 22 prohead core protein; Provisional
Probab=26.18 E-value=2.6e+02 Score=22.55 Aligned_cols=42 Identities=26% Similarity=0.501 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 034704 21 QNLLQQMQSRFQ----TMSESIIAKIDEMGSRIDELEQSINDLRSE 62 (86)
Q Consensus 21 q~LLqQmQ~kFq----tmS~~I~~RiDeMgsRIDdLEksI~dLm~q 62 (86)
+.+|..|.+=|- ++.++-+.-+++|-.+|++.|+.+.+|...
T Consensus 118 Es~l~GLK~lF~Ehnv~vpee~vdvV~em~~~L~E~e~~~~~l~~e 163 (271)
T PHA02557 118 ESFLGGLKELFVEHNVVVPEEKVDVVAEMEEELDEMEEELNELFEE 163 (271)
T ss_pred HHHHHHHHHHHHHhCcCCcHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555554 344455556677777777777776666553
No 221
>PRK00420 hypothetical protein; Validated
Probab=26.11 E-value=1.7e+02 Score=20.44 Aligned_cols=39 Identities=18% Similarity=0.242 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHH
Q 034704 18 AFVQNLLQQMQSRFQTMSES-IIAKIDEMGSRIDELEQSI 56 (86)
Q Consensus 18 ~~Vq~LLqQmQ~kFqtmS~~-I~~RiDeMgsRIDdLEksI 56 (86)
.+.+-|.+.+-.-|..+... -++||.|+..-|+-||+=+
T Consensus 69 ~~~~il~~ki~~L~~kL~~e~~~~ri~Ei~~~l~~l~ki~ 108 (112)
T PRK00420 69 EVEEVLIEKINYLAKKLKEDEDIERITEIIRYLEVLERIR 108 (112)
T ss_pred HHHHHHHHHHHHHHHhCccccchhHHHHHHHHHHHHHHHH
Confidence 33444445555555555444 6778888888888888743
No 222
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=26.02 E-value=3.5e+02 Score=21.75 Aligned_cols=47 Identities=17% Similarity=0.365 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhhhHHHHHHHHHHHHH
Q 034704 15 DMTAFVQNLLQQMQSRFQTMSES------IIAKIDEMGSRIDELEQSINDLRS 61 (86)
Q Consensus 15 dLT~~Vq~LLqQmQ~kFqtmS~~------I~~RiDeMgsRIDdLEksI~dLm~ 61 (86)
+.-..++.-+++++.+...+... .-.|+.+.-.+|+.+||.|.++..
T Consensus 242 ~~~~~l~~~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~~~~ 294 (406)
T PF02388_consen 242 EYLESLQEKLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEKRIEEAEE 294 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666677777666663 567899999999999999988764
No 223
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=25.91 E-value=3.6e+02 Score=22.22 Aligned_cols=51 Identities=10% Similarity=0.307 Sum_probs=0.0
Q ss_pred CHHHHHHHH------HHHHHHHHHHHHH----------HHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 034704 12 NTADMTAFV------QNLLQQMQSRFQT----------MSESIIAKIDEMGSRIDELEQSINDLRSE 62 (86)
Q Consensus 12 s~~dLT~~V------q~LLqQmQ~kFqt----------mS~~I~~RiDeMgsRIDdLEksI~dLm~q 62 (86)
++..+..+. ..+..+|.+.... -.+.+-.+|+.+-.||+.||..|..+-..
T Consensus 369 np~~V~~lF~~~~~~~G~~~~l~~~l~~~~~~~G~l~~~~~~l~~~i~~l~~~i~~~~~rl~~~e~r 435 (462)
T PRK08032 369 DPAGVKALFVGDGKKTGITTQIATNLKSWLSTTGIIKTATDGVNKTLKKLTKQYNAVSDSIDATIAR 435 (462)
T ss_pred CHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
No 224
>PHA01750 hypothetical protein
Probab=25.60 E-value=2.1e+02 Score=19.03 Aligned_cols=25 Identities=20% Similarity=0.546 Sum_probs=18.4
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHh
Q 034704 38 IIAKIDEMGSRIDELEQSINDLRSE 62 (86)
Q Consensus 38 I~~RiDeMgsRIDdLEksI~dLm~q 62 (86)
+...|.+..-|+|+||+.|.|+...
T Consensus 47 L~~ei~~~kikqDnl~~qv~eik~k 71 (75)
T PHA01750 47 LKTEIEELKIKQDELSRQVEEIKRK 71 (75)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3445677778888888888887653
No 225
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=25.59 E-value=2.9e+02 Score=20.73 Aligned_cols=40 Identities=15% Similarity=0.458 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH------HHHHHHHHHHHhhhHHHHHHHHHHH
Q 034704 20 VQNLLQQMQSRFQTM------SESIIAKIDEMGSRIDELEQSINDL 59 (86)
Q Consensus 20 Vq~LLqQmQ~kFqtm------S~~I~~RiDeMgsRIDdLEksI~dL 59 (86)
.+.++..+...|..- ....+..+-+|+.||+.||..+..|
T Consensus 85 f~~~~k~~~~ifkegg~d~~k~~~~l~~L~e~snki~kLe~~~k~L 130 (163)
T PF03233_consen 85 FESFFKDLSKIFKEGGGDKQKQLKLLPTLEEISNKIRKLETEVKKL 130 (163)
T ss_pred HHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhH
No 226
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=25.46 E-value=2e+02 Score=18.87 Aligned_cols=29 Identities=38% Similarity=0.491 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 034704 31 FQTMSESIIAKIDEMGSRIDELEQSINDL 59 (86)
Q Consensus 31 FqtmS~~I~~RiDeMgsRIDdLEksI~dL 59 (86)
++..-+.|..++..+...|.++++++..|
T Consensus 11 l~~~i~~l~~~i~~l~~~i~e~~~~~~~L 39 (126)
T TIGR00293 11 LQQQVESLQAQIAALRALIAELETAIETL 39 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444556667777888888888887666
No 227
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=25.45 E-value=1.9e+02 Score=23.80 Aligned_cols=42 Identities=19% Similarity=0.345 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHhhhHHHHHHHHHHHHH
Q 034704 20 VQNLLQQMQSRFQTMSESII---AKIDEMGSRIDELEQSINDLRS 61 (86)
Q Consensus 20 Vq~LLqQmQ~kFqtmS~~I~---~RiDeMgsRIDdLEksI~dLm~ 61 (86)
+++.|.+||...+.|+..|- +-+--|+-.|-+||+.|+.|=.
T Consensus 110 h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~LEs 154 (326)
T PF04582_consen 110 HSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKALES 154 (326)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHHhc
Confidence 45567888888888887765 3456677788888888888744
No 228
>TIGR01013 2a58 Phosphate:Na+ Symporter (PNaS) Family.
Probab=25.28 E-value=1.1e+02 Score=24.85 Aligned_cols=47 Identities=9% Similarity=-0.052 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 034704 13 TADMTAFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDL 59 (86)
Q Consensus 13 ~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dL 59 (86)
...+-..|...++....=|..-......|+-+...+||+||+.+.+-
T Consensus 380 l~~~~~~v~~~f~~a~~~l~~~~~~~a~~lv~~~~~i~~l~~~~~~~ 426 (456)
T TIGR01013 380 RWFLIVYLVLNFLLAPSLLFGLDLNLARRLVGVKIPFRILELFSSLL 426 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34455566666666666666666777888888899999999887664
No 229
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=25.15 E-value=2e+02 Score=18.55 Aligned_cols=45 Identities=24% Similarity=0.469 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHH-Hhh-hHHHHHHHHHHHHHhhc
Q 034704 20 VQNLLQQMQSRFQTMSESII------AKIDE-MGS-RIDELEQSINDLRSEMG 64 (86)
Q Consensus 20 Vq~LLqQmQ~kFqtmS~~I~------~RiDe-Mgs-RIDdLEksI~dLm~qaG 64 (86)
+..+|..||+-|..|+-.-. ..||. ++. +=.+|+..|..|+...-
T Consensus 15 Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~d~s~~~~~R~~L~~~l~~lv~~mE 67 (79)
T PF06657_consen 15 LSEVLKALQDEFGHMKMEHQELQDEYKQMDPSLGRRKRRDLEQELEELVKRME 67 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHHH
Confidence 35566666666666654332 22332 222 23478888888877643
No 230
>PF07400 IL11: Interleukin 11; InterPro: IPR020438 Interleukins (IL) are a group of cytokines that play an important role in the immune system. They modulate inflammation and immunity by regulating growth, mobility and differentiation of lymphoid and other cells. Interleukin-11 (IL-11) is a pleiotropic cytokine that stimulates megakaryocytopoiesis, resulting in increased production of platelets, as well as activating osteoclasts, inhibiting epithelial cell proliferation and apoptosis, and inhibiting macrophage mediator production. These functions may be particularly important in mediating the hematopoietic, osseous and mucosal protective effects of IL-11 []. The cytokine also possesses anti-inflammatory activity, and has been proposed as a therapeutic agent in the treatment of chronic inflammatory diseases, such as Crohn's disease and rheumatoid arthritis [].
Probab=25.11 E-value=1.8e+02 Score=22.49 Aligned_cols=36 Identities=28% Similarity=0.399 Sum_probs=26.0
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhhccC--CCCCCCCCC
Q 034704 40 AKIDEMGSRIDELEQSINDLRSEMGIE--GSASPSLPS 75 (86)
Q Consensus 40 ~RiDeMgsRIDdLEksI~dLm~qaG~e--~~~~~~~~~ 75 (86)
-++-.|.+||+.|=+.|.-+|...... .+++|+.|.
T Consensus 124 p~lg~~~s~l~~Ll~~lq~lM~rl~~pq~~p~~PspP~ 161 (199)
T PF07400_consen 124 PELGTMHSRLKRLLNRLQLLMSRLELPQLTPPSPSPPL 161 (199)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCC
Confidence 456789999999999999998876554 444555443
No 231
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=25.02 E-value=52 Score=25.52 Aligned_cols=20 Identities=25% Similarity=0.615 Sum_probs=17.6
Q ss_pred HHHHHHHHHhhhHHHHHHHH
Q 034704 37 SIIAKIDEMGSRIDELEQSI 56 (86)
Q Consensus 37 ~I~~RiDeMgsRIDdLEksI 56 (86)
..+.|+.+|-+|+..|||.+
T Consensus 321 ~~~~~l~~~~~~~~~~~~~~ 340 (343)
T PRK00892 321 ARLRRLDELRKRLKALEKKV 340 (343)
T ss_pred HHHhhhHHHHHHHHHHHHHh
Confidence 56889999999999999974
No 232
>PHA03332 membrane glycoprotein; Provisional
Probab=25.00 E-value=1.8e+02 Score=28.21 Aligned_cols=40 Identities=10% Similarity=0.297 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 034704 16 MTAFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQS 55 (86)
Q Consensus 16 LT~~Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEks 55 (86)
+++-+++=+.....|-..+.+++-.|++.+.++|+-|-..
T Consensus 924 isatl~~nI~avNgRIs~Led~VN~r~~~v~~~intLA~q 963 (1328)
T PHA03332 924 ISATLDNNIRAVNGRVSDLEDQVNLRFLAVATNFNTLATQ 963 (1328)
T ss_pred HHHHHHhhHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444445555554444444444433
No 233
>PF02108 FliH: Flagellar assembly protein FliH; InterPro: IPR018035 This entry represents a region found in the flagellar assembly protein FliH, as well as in type III secretion system protein HrpE. Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export []. The sequence of fliH has been deduced and shown to encode a protein of molecular mass of 25,782 Da. Bacterial HrpE proteins are belived to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) [].
Probab=24.92 E-value=1.9e+02 Score=18.33 Aligned_cols=37 Identities=8% Similarity=0.332 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 034704 13 TADMTAFVQNLLQQMQSRFQTMSESIIAKIDEMGSRI 49 (86)
Q Consensus 13 ~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRI 49 (86)
.+.|.++++.+-+.++..++.+...|+.-.=.+..||
T Consensus 4 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~iae~v 40 (128)
T PF02108_consen 4 QAELEQLLEELEEALQELLEELEQELVELALAIAEKV 40 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555544444444333
No 234
>KOG2802 consensus Membrane protein HUEL (cation efflux superfamily) [General function prediction only]
Probab=24.89 E-value=75 Score=27.50 Aligned_cols=21 Identities=24% Similarity=0.570 Sum_probs=18.0
Q ss_pred HHHHHHhhhHHHHHHHHHHHH
Q 034704 40 AKIDEMGSRIDELEQSINDLR 60 (86)
Q Consensus 40 ~RiDeMgsRIDdLEksI~dLm 60 (86)
.-+|-||..||-|||+|..+.
T Consensus 472 nivd~lG~EvDRlEkel~~~~ 492 (503)
T KOG2802|consen 472 NIVDTLGAEVDRLEKELKKRN 492 (503)
T ss_pred HHHHHhhhHHHHHHHHHHHhC
Confidence 347999999999999998764
No 235
>cd01040 globin Globins are heme proteins, which bind and transport oxygen. This family summarizes a diverse set of homologous protein domains, including: (1) tetrameric vertebrate hemoglobins, which are the major protein component of erythrocytes and transport oxygen in the bloodstream, (2) microorganismal flavohemoglobins, which are linked to C-terminal FAD-dependend reductase domains, (3) homodimeric bacterial hemoglobins, such as from Vitreoscilla, (4) plant leghemoglobins (symbiotic hemoglobins, involved in nitrogen metabolism in plant rhizomes), (5) plant non-symbiotic hexacoordinate globins and hexacoordinate globins from bacteria and animals, such as neuroglobin, (6) invertebrate hemoglobins, which may occur in tandem-repeat arrangements, and (7) monomeric myoglobins found in animal muscle tissue.
Probab=24.83 E-value=1.5e+02 Score=18.63 Aligned_cols=35 Identities=23% Similarity=0.528 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcc
Q 034704 30 RFQTMSESIIAKIDEMGSRIDELEQSINDLRSEMGI 65 (86)
Q Consensus 30 kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm~qaG~ 65 (86)
+|..-+..|+..|+.+=..+|+.++ +..++.+.|.
T Consensus 56 ~~~~~~~~~~~~l~~~v~~l~~~~~-l~~~l~~lg~ 90 (140)
T cd01040 56 KFKAHGKRVLNALDEAIKNLDDLEA-LKALLAKLGR 90 (140)
T ss_pred HHHHHHHHHHHHHHHHHHhccChHH-HHHHHHHHHH
Confidence 4555667777778888777877766 6666666654
No 236
>cd00082 HisKA Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase. They subsequently transfer the phosphoryl group to the Asp acceptor residue of a response regulator protein. Two-component signalling systems, consisting of a histidine protein kinase that senses a signal input and a response regulator that mediates the output, are ancient and evolutionarily conserved signaling mechanisms in prokaryotes and eukaryotes.
Probab=24.81 E-value=1.1e+02 Score=15.60 Aligned_cols=24 Identities=21% Similarity=0.266 Sum_probs=12.8
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHH
Q 034704 37 SIIAKIDEMGSRIDELEQSINDLR 60 (86)
Q Consensus 37 ~I~~RiDeMgsRIDdLEksI~dLm 60 (86)
.+...++.|...++.+..-+.++.
T Consensus 38 ~~~~~~~~~~~~~~~~~~l~~~l~ 61 (65)
T cd00082 38 EQREYLERIREEAERLLRLINDLL 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555666666665554
No 237
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=24.56 E-value=2.2e+02 Score=21.30 Aligned_cols=21 Identities=29% Similarity=0.563 Sum_probs=16.4
Q ss_pred HHHHhhhHHHHHHHHHHHHHh
Q 034704 42 IDEMGSRIDELEQSINDLRSE 62 (86)
Q Consensus 42 iDeMgsRIDdLEksI~dLm~q 62 (86)
+-++-+.|..||++|-+|++-
T Consensus 74 ~~~~~eelerLe~~iKdl~~l 94 (157)
T COG3352 74 LQDIKEELERLEENIKDLVSL 94 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888888888864
No 238
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=24.53 E-value=1.2e+02 Score=21.09 Aligned_cols=23 Identities=35% Similarity=0.655 Sum_probs=16.2
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHh
Q 034704 40 AKIDEMGSRIDELEQSINDLRSE 62 (86)
Q Consensus 40 ~RiDeMgsRIDdLEksI~dLm~q 62 (86)
.|-++.-.++++||..|.+|..+
T Consensus 105 ~Ke~~~~~~l~~L~~~i~~L~~~ 127 (134)
T PF07047_consen 105 KKEEELQERLEELEERIEELEEQ 127 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777777664
No 239
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=24.34 E-value=3e+02 Score=21.58 Aligned_cols=36 Identities=28% Similarity=0.336 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 034704 22 NLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSIN 57 (86)
Q Consensus 22 ~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~ 57 (86)
+-++.+-.||+++..+|=.=+..+-+--+.|.+.+.
T Consensus 84 ~~~~~~~~ky~sv~~qId~I~~~L~~~~~~L~~d~~ 119 (333)
T PF05816_consen 84 NSLERYFAKYQSVQSQIDKIIAELESGQDELLRDNA 119 (333)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567778888888887765444444444444444433
No 240
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=24.28 E-value=44 Score=17.76 Aligned_cols=27 Identities=19% Similarity=0.469 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 034704 34 MSESIIAKIDEMGSRIDELEQSINDLRSEM 63 (86)
Q Consensus 34 mS~~I~~RiDeMgsRIDdLEksI~dLm~qa 63 (86)
+++....+|+++..+.. .|.++++.++
T Consensus 6 l~~~~~~~l~~~a~~~g---~s~s~~ir~a 32 (39)
T PF01402_consen 6 LPDELYERLDELAKELG---RSRSELIREA 32 (39)
T ss_dssp EEHHHHHHHHHHHHHHT---SSHHHHHHHH
T ss_pred eCHHHHHHHHHHHHHHC---cCHHHHHHHH
Confidence 45566677777766543 5555555543
No 241
>COG4839 FtsL Protein required for the initiation of cell division [Cell division and chromosome partitioning]
Probab=24.26 E-value=2.8e+02 Score=19.93 Aligned_cols=23 Identities=39% Similarity=0.534 Sum_probs=18.7
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHH
Q 034704 39 IAKIDEMGSRIDELEQSINDLRS 61 (86)
Q Consensus 39 ~~RiDeMgsRIDdLEksI~dLm~ 61 (86)
-.+|++=.+++|+|++.|.||-.
T Consensus 73 e~kIs~q~~e~~dlkqeV~dLss 95 (120)
T COG4839 73 ESKISEQKTENDDLKQEVKDLSS 95 (120)
T ss_pred HHHHHHHHhhhhhHHHHHHHhcc
Confidence 35678888999999999998843
No 242
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=24.24 E-value=1e+02 Score=20.59 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHH
Q 034704 34 MSESIIAKIDEMGSRIDELEQSIN 57 (86)
Q Consensus 34 mS~~I~~RiDeMgsRIDdLEksI~ 57 (86)
|-..+...+.++-..+-+||++|+
T Consensus 89 l~~~~~~~~~~~~~~~~~~~~~~~ 112 (112)
T cd05511 89 MLELAEELLAEREEKLTQLEKNIN 112 (112)
T ss_pred HHHHHHHHHHHhHHHHHHHHHhcC
Confidence 444444556777777888888874
No 243
>PF13990 YjcZ: YjcZ-like protein
Probab=24.05 E-value=2.4e+02 Score=22.65 Aligned_cols=36 Identities=17% Similarity=0.319 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHH--HHHHhhcc
Q 034704 30 RFQTMSESIIAKIDEMGSRIDELEQSIN--DLRSEMGI 65 (86)
Q Consensus 30 kFqtmS~~I~~RiDeMgsRIDdLEksI~--dLm~qaG~ 65 (86)
.|....+++..-.+.+..|++.||+.|. +|+.++|.
T Consensus 91 ~s~~l~~qL~~l~~~f~qr~~~lE~~L~q~~l~~~a~~ 128 (270)
T PF13990_consen 91 YSPSLRQQLEALAEQFNQRAAHLEKALSQRGLTQQAGE 128 (270)
T ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3556666666777888999999999885 56666653
No 244
>KOG3759 consensus Uncharacterized RUN domain protein [Signal transduction mechanisms]
Probab=24.03 E-value=5.2e+02 Score=23.08 Aligned_cols=54 Identities=30% Similarity=0.471 Sum_probs=44.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcc
Q 034704 8 DPKQNTADMTAFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEMGI 65 (86)
Q Consensus 8 ~~~~s~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm~qaG~ 65 (86)
-++-|+.+|..-|++-|.|+-+-|. |-.|++ |.+-+.|-|||+-|+=|-.++|-
T Consensus 199 i~~lsteelr~qVD~A~~q~VnP~k-~KeQLV---~QLkTQItDLErFInFlQ~e~~e 252 (621)
T KOG3759|consen 199 IDKLSTEELRRQVDDALKQLVNPFK-EKEQLV---DQLKTQITDLERFINFLQDEVGE 252 (621)
T ss_pred cccccHHHHHHHHHHHHHHHhChHH-HHHHHH---HHHHHHHHHHHHHHHHHHHhhhc
Confidence 3567899999999999999999885 344554 66778999999999998888775
No 245
>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=23.88 E-value=1.6e+02 Score=27.29 Aligned_cols=43 Identities=19% Similarity=0.436 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 034704 18 AFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRS 61 (86)
Q Consensus 18 ~~Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm~ 61 (86)
.--+.+|.++.+-+.. ...++.|+...-.++.+|||.|..|..
T Consensus 711 ~~~~~~l~~~a~~lk~-~~~~~~kv~~l~~~~k~lekel~~lk~ 753 (879)
T COG0013 711 QEQEDLLKEIASLLKV-PPELLPKVERLLEELKELEKELERLKK 753 (879)
T ss_pred HHHHHHHHHHHHHhCC-ChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345678888888888 888999999999999999999999977
No 246
>smart00709 Zpr1 Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1. Also present in archaeal proteins.
Probab=23.74 E-value=1.8e+02 Score=21.04 Aligned_cols=41 Identities=20% Similarity=0.301 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHhhhHHHHHHHHHHHH
Q 034704 20 VQNLLQQMQSRFQTMSESIIAK-IDEMGSRIDELEQSINDLR 60 (86)
Q Consensus 20 Vq~LLqQmQ~kFqtmS~~I~~R-iDeMgsRIDdLEksI~dLm 60 (86)
|+.+|+++.+..........+- =++-..|++++=+.|..++
T Consensus 98 VEGlL~~i~~~L~~~~~~~~~~~~~e~~~k~~~~~~~L~~~~ 139 (160)
T smart00709 98 VEGLLSRVREVLSQAIQETRDDSDPETKEKIDEFLEKLKELI 139 (160)
T ss_pred hHHHHHHHHHHHHhhhhhhcccCCHHHHHHHHHHHHHHHHHH
Confidence 5777777777766553221110 1223344555555555555
No 247
>PRK05683 flgK flagellar hook-associated protein FlgK; Validated
Probab=23.63 E-value=4.2e+02 Score=23.36 Aligned_cols=41 Identities=15% Similarity=0.385 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhc
Q 034704 24 LQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEMG 64 (86)
Q Consensus 24 LqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm~qaG 64 (86)
++++..+++.+-..|-.+|...-.+|+.|=++|++|-.+.-
T Consensus 143 fn~~~~~L~~l~~~vn~qI~~~V~~IN~l~~qIA~LN~qI~ 183 (676)
T PRK05683 143 FNSLSSQLNQQNSNINSQLSAMTDQVNNLTTSIASYNKQIA 183 (676)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666677777778888888888888888888887764
No 248
>PF12792 CSS-motif: CSS motif domain associated with EAL ; InterPro: IPR024744 This domain, with its characteristic highly conserved CSS sequence motif, is found N-terminal to the EAL domain (PF00563 from PFAM), found in many putative cyclic diguanylate phosphodiesterases.
Probab=23.60 E-value=2.3e+02 Score=18.95 Aligned_cols=28 Identities=18% Similarity=0.406 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034704 14 ADMTAFVQNLLQQMQSRFQTMSESIIAKI 42 (86)
Q Consensus 14 ~dLT~~Vq~LLqQmQ~kFqtmS~~I~~Ri 42 (86)
+++..+.+.+++++..-|... .+++.++
T Consensus 5 ~~~~~~a~~~~~~~e~~~~~~-~~~~~~~ 32 (208)
T PF12792_consen 5 RDLDTYAQRALQRIESVLDQA-RQALDAL 32 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 455666666666666555554 3333333
No 249
>COG4062 MtrB Tetrahydromethanopterin S-methyltransferase, subunit B [Coenzyme metabolism]
Probab=23.54 E-value=1.3e+02 Score=21.34 Aligned_cols=31 Identities=23% Similarity=0.447 Sum_probs=23.8
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhccCCC
Q 034704 38 IIAKIDEMGSRIDELEQSINDLRSEMGIEGS 68 (86)
Q Consensus 38 I~~RiDeMgsRIDdLEksI~dLm~qaG~e~~ 68 (86)
|+--+|..-.||++||.-.+||++......+
T Consensus 29 i~ldv~pi~Eqi~kLe~~vddl~~sldPstp 59 (108)
T COG4062 29 IFLDVDPIEEQIKKLETLVDDLENSLDPSTP 59 (108)
T ss_pred EEEeccHHHHHHHHHHHHHHHHHhccCCCCC
Confidence 4445678888999999999999987654433
No 250
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=23.43 E-value=4.7e+02 Score=22.71 Aligned_cols=21 Identities=19% Similarity=0.477 Sum_probs=9.7
Q ss_pred HHHHHHhhhHHHHHHHHHHHH
Q 034704 40 AKIDEMGSRIDELEQSINDLR 60 (86)
Q Consensus 40 ~RiDeMgsRIDdLEksI~dLm 60 (86)
..+.+...|++.||..+++..
T Consensus 378 ~~~~~~~~~l~~le~~l~~~~ 398 (656)
T PRK06975 378 ASVHQLDSQFAQLDGKLADAQ 398 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555444433
No 251
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=23.43 E-value=2.2e+02 Score=18.41 Aligned_cols=41 Identities=15% Similarity=0.350 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHH
Q 034704 14 ADMTAFVQNLLQQMQSRFQTMSESII-AKIDEMGSRIDELEQ 54 (86)
Q Consensus 14 ~dLT~~Vq~LLqQmQ~kFqtmS~~I~-~RiDeMgsRIDdLEk 54 (86)
.+|..+.+.+.++++..|-.--...+ +.+..+-..+..+++
T Consensus 64 ~~l~~~~~~~~~~~~~~v~~pL~~~~~~~~~~~~~~~k~~~~ 105 (194)
T cd07307 64 KELEEFRDQLEQKLENKVIEPLKEYLKKDLKEIKKRRKKLDK 105 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666777777777744444444 444444444444444
No 252
>KOG1511 consensus Mevalonate kinase MVK/ERG12 [Lipid transport and metabolism]
Probab=23.37 E-value=1.8e+02 Score=24.76 Aligned_cols=34 Identities=32% Similarity=0.485 Sum_probs=28.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 034704 10 KQNTADMTAFVQNLLQQMQSRFQTMSESIIAKIDEMGS 47 (86)
Q Consensus 10 ~~s~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~RiDeMgs 47 (86)
+.|+.+|-+-|..++ .||-++-+.|+.-||+.+.
T Consensus 240 ~RnTk~lVa~Vr~~~----~kfPevi~~i~~aid~is~ 273 (397)
T KOG1511|consen 240 PRNTKALVAGVRELL----EKFPEVIKAIFDAIDEISL 273 (397)
T ss_pred CccHHHHHHHHHHHH----HhhhHHHHHHHHHHHHHHH
Confidence 468899888888776 8999999999999988764
No 253
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=23.30 E-value=2e+02 Score=18.11 Aligned_cols=52 Identities=21% Similarity=0.418 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhhHHHHHHHHHHHHHhhccC
Q 034704 15 DMTAFVQNLLQQMQSRFQTMS-------ESIIAKIDEMGSRIDELEQSINDLRSEMGIE 66 (86)
Q Consensus 15 dLT~~Vq~LLqQmQ~kFqtmS-------~~I~~RiDeMgsRIDdLEksI~dLm~qaG~e 66 (86)
.....++.|+.-+...++.+. ..++.+......+|..||+....+....+..
T Consensus 12 ~~~~~~~~L~~ll~~e~~~l~~~d~~~l~~~~~~k~~l~~~l~~le~~r~~~~~~~~~~ 70 (143)
T PF05130_consen 12 EQIELLQELLELLEEEREALISGDIDELEELVEEKQELLEELRELEKQRQQLLAKLGAE 70 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 344455556666666655433 3566777888899999999999999988877
No 254
>COG1394 NtpD Archaeal/vacuolar-type H+-ATPase subunit D [Energy production and conversion]
Probab=23.28 E-value=2.5e+02 Score=21.52 Aligned_cols=38 Identities=16% Similarity=0.468 Sum_probs=24.4
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 034704 15 DMTAFVQNLL--QQMQSRFQTMSESIIAKIDEMGSRIDELEQSI 56 (86)
Q Consensus 15 dLT~~Vq~LL--qQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI 56 (86)
.+..+++.++ -.++..|..| ...|..-.+|++.||+.|
T Consensus 132 ~~~elle~li~lae~e~~~~~L----~~Ei~~T~RRVNalE~~i 171 (211)
T COG1394 132 KFEELLEKLIELAELETTLRLL----LEEIRKTKRRVNALEYVI 171 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhhhh
Confidence 3444444442 3456666664 445678899999999876
No 255
>COG4570 Rus Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=23.25 E-value=69 Score=23.25 Aligned_cols=19 Identities=21% Similarity=0.345 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHhhccCC
Q 034704 49 IDELEQSINDLRSEMGIEG 67 (86)
Q Consensus 49 IDdLEksI~dLm~qaG~e~ 67 (86)
||+|=|++-|-|+.+|+-.
T Consensus 84 lDNl~K~l~Daltk~g~~~ 102 (132)
T COG4570 84 LDNLLKALLDALTKAGVWK 102 (132)
T ss_pred HHHHHHHHHHHHhhcceec
Confidence 8999999999999999753
No 256
>PRK07857 hypothetical protein; Provisional
Probab=23.09 E-value=1.3e+02 Score=20.86 Aligned_cols=22 Identities=36% Similarity=0.530 Sum_probs=13.7
Q ss_pred HHHHHhhhHHHHHHHHHHHHHh
Q 034704 41 KIDEMGSRIDELEQSINDLRSE 62 (86)
Q Consensus 41 RiDeMgsRIDdLEksI~dLm~q 62 (86)
.|+++=++||.|-+.|-+|+++
T Consensus 29 ~L~~lR~eID~ID~eIl~LL~e 50 (106)
T PRK07857 29 EIDELREEIDRLDAEILALVKR 50 (106)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666666554
No 257
>PF04163 Tht1: Tht1-like nuclear fusion protein ; InterPro: IPR007292 Nuclear fusion protein KAR5 is an integral membrane protein that is thought to be required for the fusion of nuclear envelopes during karyogamy.
Probab=22.95 E-value=3.8e+02 Score=23.30 Aligned_cols=35 Identities=23% Similarity=0.387 Sum_probs=23.9
Q ss_pred CHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHh
Q 034704 12 NTADMTAFVQNLLQQMQ-------SRFQTMSESIIAKIDEMG 46 (86)
Q Consensus 12 s~~dLT~~Vq~LLqQmQ-------~kFqtmS~~I~~RiDeMg 46 (86)
...+|+.+++.+|+.+- +.|......|+..+..++
T Consensus 383 l~p~l~~~~~~ll~~~~~~~s~l~~~f~~w~~~i~~tf~~i~ 424 (544)
T PF04163_consen 383 LLPSLTNFKNQLLQEWTMMTSNLNSDFALWNREIFSTFESIS 424 (544)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHH
Confidence 34578888888887765 556666666666666665
No 258
>PF00509 Hemagglutinin: Haemagglutinin; InterPro: IPR001364 Haemagglutinin (HA) is one of two main surface fusion glycoproteins embedded in the envelope of influenza viruses, the other being neuraminidase (NA). There are sixteen known HA subtypes (H1-H16) and nine NA subtypes (N1-N9), which together are used to classify influenza viruses (e.g. H5N1). The antigenic variations in HA and NA enable the virus to evade host antibodies made to previous influenza strains, accounting for recurrent influenza epidemics []. The HA glycoprotein is present in the viral membrane as a single polypeptide (HA0), which must be cleaved by the host's trypsin-like proteases to produce two peptides (HA1 and HA2) in order for the virus to be infectious. Once HA0 is cleaved, the newly exposed N-terminal of the HA2 peptide then acts to fuse the viral envelope to the cellular membrane of the host cell, which allows the viral negative-stranded RNA to infect the host cell. The type of host protease can influence the infectivity and pathogenicity of the virus. The haemagglutinin glycoprotein is a trimer containing three structurally distinct regions: a globular head consisting of anti-parallel beta-sheets that form a beta-sandwich with a jelly-roll fold (contains the receptor binding site and the HA1/HA2 cleavage site); a triple-stranded, coiled-coil, alpha-helical stalk; and a globular foot composed of anti-parallel beta-sheets [, ]. Each monomer consists of an intact HA0 polypeptide with the HA1 and HA2 regions linked by disulphide bonds. The N terminus of HA1 provides the central strand in the 5-stranded globular foot, while the rest of the HA1 chain makes its way to the 8-stranded globular head. HA2 provides two alpha helices, which form part of the triple-stranded coiled-coil that stabilises the trimer, its C terminus providing the remaining strands of the 5-stranded globular foot. This entry represents the entire haemagglutinin protein (HA0) consisting of both the HA1 and HA2 regions, as found in influenza A and B viruses.; GO: 0046789 host cell surface receptor binding, 0019064 viral envelope fusion with host membrane, 0019031 viral envelope; PDB: 2WR5_A 2IBX_A 2WR0_B 2WR1_C 2XN9_F 2WRF_I 3S11_E 3BT6_A 3SM5_E 2FK0_H ....
Probab=22.81 E-value=12 Score=32.59 Aligned_cols=44 Identities=16% Similarity=0.450 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 034704 20 VQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEM 63 (86)
Q Consensus 20 Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm~qa 63 (86)
.|.-++|+..|++++.+.+-.+....+.+.++||+.|..|-.+.
T Consensus 369 TQ~aid~it~kvN~iiek~n~~fe~i~~ef~~ve~Ri~~l~~~v 412 (550)
T PF00509_consen 369 TQKAIDQITKKVNSIIEKMNKQFEQIDKEFNEVEKRIDNLEKKV 412 (550)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCEEEECSCSSSTTGHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHhh
Confidence 46667888888888777776677778888999999999887654
No 259
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=22.65 E-value=2.9e+02 Score=19.59 Aligned_cols=40 Identities=15% Similarity=0.411 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 034704 20 VQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDL 59 (86)
Q Consensus 20 Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dL 59 (86)
+...|+.++.-|..=.+.|..-|..+-..++-+.+.+..|
T Consensus 27 ~~dtLe~i~~~~~~K~~~~~~~Ik~~ea~~e~~k~E~krL 66 (162)
T PF05565_consen 27 IADTLESIEDEIEEKADNIAKVIKNLEADIEAIKAEIKRL 66 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3444555555555555555555555544444444444333
No 260
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=22.56 E-value=2.8e+02 Score=24.87 Aligned_cols=44 Identities=18% Similarity=0.394 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCCCC
Q 034704 22 NLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEMGIEGSA 69 (86)
Q Consensus 22 ~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm~qaG~e~~~ 69 (86)
.=|++++.+.+++-++...|+.. ++.+...|..|+...|++-..
T Consensus 160 ~kLeelr~~L~~L~~ek~~Rlek----v~~~~~~I~~l~~~Lg~~~~~ 203 (660)
T KOG4302|consen 160 EKLEELREHLNELQKEKSDRLEK----VLELKEEIKSLCSVLGLDFSM 203 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhCCCccc
Confidence 55788888888888888888865 577888999999999987553
No 261
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=22.56 E-value=3e+02 Score=20.45 Aligned_cols=18 Identities=17% Similarity=0.292 Sum_probs=9.2
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 034704 10 KQNTADMTAFVQNLLQQM 27 (86)
Q Consensus 10 ~~s~~dLT~~Vq~LLqQm 27 (86)
+.+..+|-+-+..+++++
T Consensus 129 ~~~l~~ll~~~~~ll~~~ 146 (291)
T TIGR00996 129 PPEIDDLLGSLTRLLNGL 146 (291)
T ss_pred CccHHHHHHHHHHHHhcC
Confidence 335555555555555443
No 262
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=22.35 E-value=1.8e+02 Score=20.06 Aligned_cols=22 Identities=32% Similarity=0.616 Sum_probs=14.2
Q ss_pred HHHHhhhHHHHHHHHHHHHHhh
Q 034704 42 IDEMGSRIDELEQSINDLRSEM 63 (86)
Q Consensus 42 iDeMgsRIDdLEksI~dLm~qa 63 (86)
++-.++|||-..+||.-|=++.
T Consensus 70 v~~l~RRiDYV~~Ni~tleKql 91 (99)
T PF13758_consen 70 VDVLSRRIDYVQQNIETLEKQL 91 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3555677777777777665554
No 263
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=22.34 E-value=2.3e+02 Score=18.43 Aligned_cols=40 Identities=23% Similarity=0.527 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHH-----------------HHHHHHHhhhHHHHHHHHHHH
Q 034704 20 VQNLLQQMQSRFQTMSESI-----------------IAKIDEMGSRIDELEQSINDL 59 (86)
Q Consensus 20 Vq~LLqQmQ~kFqtmS~~I-----------------~~RiDeMgsRIDdLEksI~dL 59 (86)
+..||.++..-|.+++..+ +.-|+.+-..|-+||..-..+
T Consensus 2 l~elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~km 58 (79)
T PF08581_consen 2 LNELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKM 58 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888887777632 233455556677776654433
No 264
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best
Probab=22.32 E-value=2e+02 Score=18.94 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHH
Q 034704 26 QMQSRFQTMSESIIAKIDEMGSRIDE 51 (86)
Q Consensus 26 QmQ~kFqtmS~~I~~RiDeMgsRIDd 51 (86)
.+...|...+..-...+|.+..||-+
T Consensus 38 ~~~~~f~~~a~ee~~Ha~~lae~i~~ 63 (153)
T cd00907 38 KLAERFRKESIEEMKHADKLIERILF 63 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555533
No 265
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=22.31 E-value=1.9e+02 Score=20.01 Aligned_cols=13 Identities=0% Similarity=0.248 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 034704 27 MQSRFQTMSESII 39 (86)
Q Consensus 27 mQ~kFqtmS~~I~ 39 (86)
|...+..+...|.
T Consensus 20 l~~el~~LK~~~~ 32 (110)
T PRK13169 20 LLKELGALKKQLA 32 (110)
T ss_pred HHHHHHHHHHHHH
Confidence 3333334444433
No 266
>PRK12714 flgK flagellar hook-associated protein FlgK; Provisional
Probab=22.31 E-value=4.8e+02 Score=22.53 Aligned_cols=41 Identities=15% Similarity=0.411 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhc
Q 034704 24 LQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEMG 64 (86)
Q Consensus 24 LqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm~qaG 64 (86)
++.+..+++.+-..|-..|...-.+|+.|=++|++|-.+..
T Consensus 143 f~~~~~~L~~~~~~~n~~i~~~V~~IN~l~~~IA~LN~~I~ 183 (624)
T PRK12714 143 FKQLNGQMDSLSNEVNSGLTSSVDEVNRLTQQIAKINGTIG 183 (624)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555566666777788888888888888888887774
No 267
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=22.25 E-value=1.8e+02 Score=22.58 Aligned_cols=38 Identities=26% Similarity=0.440 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHhhhHHHHHHHHHHH
Q 034704 22 NLLQQMQSRFQTMSESII------AKIDEMGSRIDELEQSINDL 59 (86)
Q Consensus 22 ~LLqQmQ~kFqtmS~~I~------~RiDeMgsRIDdLEksI~dL 59 (86)
++|..|-+.|-++...+- .+-.+|..+||.|+..|+-+
T Consensus 30 g~~~~~~d~~~~~~s~~~~v~~~~~eF~Emkey~d~L~~~L~~i 73 (243)
T cd07666 30 GLLSRMGQTVKAVASSVRGVKNRPEEFTEMNEYVEAFSQKINVL 73 (243)
T ss_pred hhhhhhHHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHHhhhh
Confidence 467777777777776653 24567777777777666544
No 268
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=22.24 E-value=3.3e+02 Score=20.77 Aligned_cols=43 Identities=21% Similarity=0.301 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 034704 16 MTAFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSE 62 (86)
Q Consensus 16 LT~~Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm~q 62 (86)
+.+.|..+++.+.+.+ .|-+ -.|.||-+-+.++.+.++.+|..
T Consensus 11 ~~a~~~~~~dk~EDp~-~~l~---Q~ird~~~~l~~ar~~~A~~~a~ 53 (225)
T COG1842 11 VKANINELLDKAEDPE-KMLE---QAIRDMESELAKARQALAQAIAR 53 (225)
T ss_pred HHHHHHHHHHhhcCHH-HHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777 3322 23566666666666666666643
No 269
>PF06373 CART: Cocaine and amphetamine regulated transcript protein (CART); InterPro: IPR009106 The cocaine and amphetamine regulated transcript (CART) is a brain-localised peptide that acts as a satiety factor in appetite regulation. CART was found to inhibit both normal and starvation-induced feeding, and completely blocks the feeding response induced by neuropeptide Y. CART is regulated by leptin in the hypothalamus, and can be transcriptionally induced after cocaine or amphetamine administration []. Posttranslational processing of CART produces an N-terminal CART peptide and a C-terminal CART peptide. The C-terminal CART peptide has been isolated from the hypothalamus, nucleus accumbens, and the anterior pituitary lobe in rats. C-terminal CART is the biologically active part of the molecule affecting food intake. The structure of C-terminal CART consists of a disulphide-bound fold containing a beta-hairpin and two adjacent disulphide bridges [].; GO: 0000186 activation of MAPKK activity, 0001678 cellular glucose homeostasis, 0007186 G-protein coupled receptor protein signaling pathway, 0008343 adult feeding behavior, 0009267 cellular response to starvation, 0032099 negative regulation of appetite, 0005615 extracellular space; PDB: 1HY9_A.
Probab=22.04 E-value=30 Score=23.02 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q 034704 9 PKQNTADMTAFVQNLLQQMQSR 30 (86)
Q Consensus 9 ~~~s~~dLT~~Vq~LLqQmQ~k 30 (86)
...+..+|...+|.+|+.+|+|
T Consensus 3 ~~~~ekeL~~ALqevLeklq~k 24 (73)
T PF06373_consen 3 NSSNEKELIEALQEVLEKLQSK 24 (73)
T ss_dssp ----------------------
T ss_pred chhhHHHHHHHHHHHHHHHhcc
Confidence 3456779999999999998875
No 270
>TIGR01795 CM_mono_cladeE monofunctional chorismate mutase, alpha proteobacterial type. The alpha proteobacterial members are trusted because the pathways of CM are evident and there is only one plausible CM in the genome. In S. coelicolor, however, there is another aparrent monofunctional CM.
Probab=21.90 E-value=1.4e+02 Score=19.72 Aligned_cols=23 Identities=17% Similarity=0.446 Sum_probs=16.5
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHh
Q 034704 40 AKIDEMGSRIDELEQSINDLRSE 62 (86)
Q Consensus 40 ~RiDeMgsRIDdLEksI~dLm~q 62 (86)
.+|+++=++||.|-+.|-+|+.+
T Consensus 3 ~~L~~lR~~ID~ID~qLv~LL~~ 25 (94)
T TIGR01795 3 AELKALRQSIDNIDAAVIHMLAE 25 (94)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777788888777777654
No 271
>PF15027 DUF4525: Domain of unknown function (DUF4525)
Probab=21.81 E-value=1.4e+02 Score=21.92 Aligned_cols=28 Identities=21% Similarity=0.447 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 034704 34 MSESIIAKIDEMGSRIDELEQSINDLRS 61 (86)
Q Consensus 34 mS~~I~~RiDeMgsRIDdLEksI~dLm~ 61 (86)
+-..|.--+|+|=.||+.||..+.-++.
T Consensus 80 LKktiAVLLddiLqRl~kLE~kvd~lvv 107 (138)
T PF15027_consen 80 LKKTIAVLLDDILQRLVKLESKVDNLVV 107 (138)
T ss_pred HhhhhhhhhhHHHHHHHHHHHHHHHHee
Confidence 3444555589999999999999998653
No 272
>PF11328 DUF3130: Protein of unknown function (DUF3130; InterPro: IPR021477 This bacterial family of proteins has no known function.
Probab=21.74 E-value=2.8e+02 Score=19.05 Aligned_cols=39 Identities=13% Similarity=0.348 Sum_probs=30.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 034704 12 NTADMTAFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDE 51 (86)
Q Consensus 12 s~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDd 51 (86)
|...+...+-.|.+-++ .||.+-..=..||-.||.-.-.
T Consensus 42 sin~~r~Al~dLv~~Ve-~fq~v~~~DA~RlkkmG~a~~k 80 (90)
T PF11328_consen 42 SINQLRTALIDLVDVVE-NFQQVVKKDASRLKKMGKAFTK 80 (90)
T ss_pred hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777776665 4999999999999999975543
No 273
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=21.67 E-value=1.1e+02 Score=25.92 Aligned_cols=21 Identities=24% Similarity=0.618 Sum_probs=17.0
Q ss_pred HHHHhhhHHHHHHHHHHHHHh
Q 034704 42 IDEMGSRIDELEQSINDLRSE 62 (86)
Q Consensus 42 iDeMgsRIDdLEksI~dLm~q 62 (86)
++.+..||..||+.+..+...
T Consensus 371 ~~~~~~~~~~l~~~~~~~~~~ 391 (559)
T PRK05563 371 LEVLLQRVEQLEQELKQLKAQ 391 (559)
T ss_pred HHHHHHHHHHHHHHHHhcccC
Confidence 566788999999999887653
No 274
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=21.45 E-value=2.6e+02 Score=23.57 Aligned_cols=36 Identities=25% Similarity=0.572 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 034704 24 LQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDL 59 (86)
Q Consensus 24 LqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dL 59 (86)
..++.++|+.|-..++++=-.-|.-++.||+.|..+
T Consensus 142 v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~~ 177 (569)
T PRK04778 142 VEQLKDLYRELRKSLLANRFSFGPALDELEKQLENL 177 (569)
T ss_pred HHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHH
Confidence 567888999999999988666666666666666554
No 275
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=21.45 E-value=1.1e+02 Score=18.09 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=13.0
Q ss_pred HHHHHHHHhhhHHHHHHHHHHH
Q 034704 38 IIAKIDEMGSRIDELEQSINDL 59 (86)
Q Consensus 38 I~~RiDeMgsRIDdLEksI~dL 59 (86)
+-.++++.-.++++|++.|..|
T Consensus 29 l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 29 LQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3345556666666666666665
No 276
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=21.36 E-value=1.8e+02 Score=16.81 Aligned_cols=25 Identities=24% Similarity=0.449 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH
Q 034704 35 SESIIAKIDEMGSRIDELEQSINDL 59 (86)
Q Consensus 35 S~~I~~RiDeMgsRIDdLEksI~dL 59 (86)
+..|-.+++.+.+|-+.|...+.+-
T Consensus 75 ~~~i~~~~~~l~~~w~~l~~~~~~r 99 (105)
T PF00435_consen 75 SDEIQEKLEELNQRWEALCELVEER 99 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666677777777666666543
No 277
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=21.07 E-value=3e+02 Score=20.89 Aligned_cols=44 Identities=14% Similarity=0.275 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 034704 16 MTAFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDL 59 (86)
Q Consensus 16 LT~~Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dL 59 (86)
++.-...+.+++......+...+-.+++.-..+++.|.+.+...
T Consensus 141 ~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~L~~l~~~l~~~ 184 (319)
T PF02601_consen 141 IVPDRRELLQRLDELRQRLNRAMRNRLQRKRQRLNQLAKRLQLQ 184 (319)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45566677777777777777777777777777777777766543
No 278
>PRK09514 zntR zinc-responsive transcriptional regulator; Provisional
Probab=21.00 E-value=2.2e+02 Score=19.56 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=11.9
Q ss_pred HHHHHHHHHHhhhHHHHHHHH
Q 034704 36 ESIIAKIDEMGSRIDELEQSI 56 (86)
Q Consensus 36 ~~I~~RiDeMgsRIDdLEksI 56 (86)
.-+-.+++++-.+|.+|++..
T Consensus 84 ~~l~~~~~~l~~~i~~L~~~~ 104 (140)
T PRK09514 84 GIVDEKLAEVEAKIAELQHMR 104 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666433
No 279
>PF04888 SseC: Secretion system effector C (SseC) like family ; InterPro: IPR006972 SseC is a secreted protein that forms a complex together with SecB and SecD on the surface of Salmonella typhimurium. All these proteins are secreted by the type III secretion system []. Many mucosal pathogens use type III secretion systems for the injection of effector proteins into target cells. SecB, SseC and SecD are inserted into the target cell membrane. where they form a small pore or translocon [, ]. In addition to SseC, this family includes the bacterial secreted proteins PopB, PepB, YopB and EspD which are thought to be directly involved in pore formation, and type III secretion system translocon.; GO: 0009405 pathogenesis
Probab=20.98 E-value=3.8e+02 Score=20.32 Aligned_cols=39 Identities=18% Similarity=0.379 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 034704 24 LQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSE 62 (86)
Q Consensus 24 LqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm~q 62 (86)
++.+.+.++.+.++.+..+-++.....++=+.+.+.+++
T Consensus 256 ~~a~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~ 294 (306)
T PF04888_consen 256 LQAMMEQLQSIMDQAIKQFKKLMESFQQIMKSISQIIQQ 294 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444443
No 280
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=20.92 E-value=2.3e+02 Score=23.99 Aligned_cols=37 Identities=16% Similarity=0.553 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 034704 24 LQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLR 60 (86)
Q Consensus 24 LqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm 60 (86)
..++.++|+.+-..+++.=..-|.-++.||+.+.++=
T Consensus 138 i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie 174 (560)
T PF06160_consen 138 IEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIE 174 (560)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHH
Confidence 4578888999999999888888888888888777653
No 281
>cd00592 HTH_MerR-like Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators. Helix-turn-helix (HTH) MerR-like transcription regulator, N-terminal domain. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription of multidrug/metal ion transporter genes and oxidative stress regulons by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=20.88 E-value=2e+02 Score=17.94 Aligned_cols=16 Identities=31% Similarity=0.520 Sum_probs=7.3
Q ss_pred HHHHHHHHhhhHHHHH
Q 034704 38 IIAKIDEMGSRIDELE 53 (86)
Q Consensus 38 I~~RiDeMgsRIDdLE 53 (86)
+..++.++-.+|+.|.
T Consensus 82 ~~~~~~~l~~~~~~l~ 97 (100)
T cd00592 82 LDEKLAELEEKIARLE 97 (100)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 282
>PRK10626 hypothetical protein; Provisional
Probab=20.66 E-value=4.2e+02 Score=20.77 Aligned_cols=37 Identities=19% Similarity=0.238 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 034704 25 QQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRS 61 (86)
Q Consensus 25 qQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm~ 61 (86)
+.++.+...=+..+-.+=+++.+|+..||..=.+|+.
T Consensus 200 ~~Ie~e~~~q~~d~~~~~~~vC~~~~~le~qr~~L~~ 236 (239)
T PRK10626 200 QAIQTEWKNQEKDFQQFGKDVCSRVVTLEDQRKALVG 236 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5666666666666666777888888888887777765
No 283
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=20.57 E-value=3.7e+02 Score=23.08 Aligned_cols=36 Identities=6% Similarity=0.332 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 034704 24 LQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEM 63 (86)
Q Consensus 24 LqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm~qa 63 (86)
...|-+||.+ ++..++.+|.+|+..-++.+..+...
T Consensus 375 a~~Lydkl~~----f~~~~~klG~~L~~a~~~y~~A~~~L 410 (475)
T PRK10361 375 ASKLYDKMRL----FVDDMSAIGQSLDKAQDNYRQAMKKL 410 (475)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455544 35678888999998888888866544
No 284
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=20.56 E-value=33 Score=28.03 Aligned_cols=49 Identities=22% Similarity=0.497 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhHHHHHHHHHHHHH
Q 034704 12 NTADMTAFVQNLLQQMQSRFQTMSES---IIAKIDEMGSRIDELEQSINDLRS 61 (86)
Q Consensus 12 s~~dLT~~Vq~LLqQmQ~kFqtmS~~---I~~RiDeMgsRIDdLEksI~dLm~ 61 (86)
++.||++.-+. |.-|+..-..|.++ +..+|-+|+.+|++|..+|.++-.
T Consensus 26 s~GDLs~I~eR-LsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s 77 (326)
T PF04582_consen 26 SPGDLSPIRER-LSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTS 77 (326)
T ss_dssp -----------------------------------------------------
T ss_pred CcccHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566554433 33344443333333 345566666666666666666544
No 285
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=20.55 E-value=2e+02 Score=21.22 Aligned_cols=37 Identities=11% Similarity=0.356 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 034704 14 ADMTAFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDE 51 (86)
Q Consensus 14 ~dLT~~Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDd 51 (86)
..|-.-+..|...+.++= +..+.++.+.-...+||..
T Consensus 6 ~~il~dak~L~~rL~~~d-~~ad~Ll~qa~~l~~~i~s 42 (181)
T PF05769_consen 6 EQILADAKRLVERLKDHD-NAADSLLSQAEALNKQIES 42 (181)
T ss_pred HHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHH
Confidence 334444444444444431 2233344443344444433
No 286
>PRK11115 transcriptional regulator PhoU; Provisional
Probab=20.40 E-value=3.3e+02 Score=19.37 Aligned_cols=46 Identities=13% Similarity=0.201 Sum_probs=35.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 034704 12 NTADMTAFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSIN 57 (86)
Q Consensus 12 s~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~ 57 (86)
...+|...|...+...-+=|.+.......++-++-.+||++.+.+.
T Consensus 127 ~l~~l~~~v~~~l~~a~~a~~~~d~~~a~~i~~~d~~Id~~~~~~~ 172 (236)
T PRK11115 127 SLESLGRHTIQMLHDVLDAFARMDLDEAVRIYREDKKVDQEYEGIV 172 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777888888888889999999998776544
No 287
>PRK08027 flgL flagellar hook-associated protein FlgL; Reviewed
Probab=20.40 E-value=3.5e+02 Score=21.01 Aligned_cols=31 Identities=19% Similarity=0.454 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 034704 24 LQQMQSRFQTMSESIIAKIDEMGSRIDELEQ 54 (86)
Q Consensus 24 LqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEk 54 (86)
|+...+.+....+.|....-++|.|+..||.
T Consensus 229 l~~a~~~id~~~~~v~~~~a~vGar~n~le~ 259 (317)
T PRK08027 229 LDKTNRGLKNSLNNVLTVRAELGTQLNELES 259 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555566666777788888887773
No 288
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=20.36 E-value=1.5e+02 Score=20.51 Aligned_cols=27 Identities=19% Similarity=0.379 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 034704 33 TMSESIIAKIDEMGSRIDELEQSINDL 59 (86)
Q Consensus 33 tmS~~I~~RiDeMgsRIDdLEksI~dL 59 (86)
.+-+-|-.|||....-|.-|||.|...
T Consensus 68 Qvv~~l~RRiDYV~~Ni~tleKql~~a 94 (99)
T PF13758_consen 68 QVVDVLSRRIDYVQQNIETLEKQLEAA 94 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667789999999999999998753
No 289
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=20.32 E-value=1.1e+02 Score=17.97 Aligned_cols=19 Identities=21% Similarity=0.553 Sum_probs=13.1
Q ss_pred HHHHHhhhHHHHHHHHHHH
Q 034704 41 KIDEMGSRIDELEQSINDL 59 (86)
Q Consensus 41 RiDeMgsRIDdLEksI~dL 59 (86)
++-...++|..||+.++.|
T Consensus 49 ~~~~~~k~l~~le~e~~~l 67 (68)
T PF06305_consen 49 RIRRLRKELKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4556667788888877654
No 290
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=20.29 E-value=4.9e+02 Score=21.31 Aligned_cols=55 Identities=25% Similarity=0.436 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------------HHHHHhhhHHHHHHHHHHHHHhh-----ccCCCCCCCCCC
Q 034704 21 QNLLQQMQSRFQTMSESIIA-------------KIDEMGSRIDELEQSINDLRSEM-----GIEGSASPSLPS 75 (86)
Q Consensus 21 q~LLqQmQ~kFqtmS~~I~~-------------RiDeMgsRIDdLEksI~dLm~qa-----G~e~~~~~~~~~ 75 (86)
+.-+++++.+...+|.+|-. ++.++..+|..||+.+..+-.+. .+-+.+.+.+|.
T Consensus 41 ~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~iPN~~~~~vP~ 113 (425)
T PRK05431 41 QTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEELLLRIPNLPHDSVPV 113 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCC
Confidence 33467777777777766643 33455666666666665554432 355556666554
No 291
>PRK07075 isochorismate-pyruvate lyase; Reviewed
Probab=20.27 E-value=1.5e+02 Score=19.69 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=17.5
Q ss_pred HHHHHhhhHHHHHHHHHHHHHh
Q 034704 41 KIDEMGSRIDELEQSINDLRSE 62 (86)
Q Consensus 41 RiDeMgsRIDdLEksI~dLm~q 62 (86)
.|+++=.+||+|-..|-+|+.+
T Consensus 9 ~L~~lR~~ID~ID~~iv~LL~e 30 (101)
T PRK07075 9 GLDDIREAIDRLDRDIIAALGR 30 (101)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 4777888888888888888765
No 292
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=20.05 E-value=71 Score=23.17 Aligned_cols=20 Identities=25% Similarity=0.557 Sum_probs=11.5
Q ss_pred HHHHHHhhhHHHHHHHHHHH
Q 034704 40 AKIDEMGSRIDELEQSINDL 59 (86)
Q Consensus 40 ~RiDeMgsRIDdLEksI~dL 59 (86)
.|||++|+|+-.=-|.|.||
T Consensus 90 nkMddvSrRL~aEgKdIdeL 109 (128)
T PF15145_consen 90 NKMDDVSRRLTAEGKDIDEL 109 (128)
T ss_pred chHHHHHHHHHhccCCHHHH
Confidence 56777777754444444444
Done!