Query 034704
Match_columns 86
No_of_seqs 115 out of 157
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 08:54:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034704.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034704hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ci9_A Heat shock factor-bindi 99.9 4.2E-28 1.4E-32 147.0 5.2 48 10-57 1-48 (48)
2 2bez_C E2 glycoprotein; coiled 95.4 0.037 1.3E-06 36.1 5.5 34 17-54 43-76 (77)
3 3swf_A CGMP-gated cation chann 95.1 0.23 7.9E-06 31.9 8.4 52 12-63 4-55 (74)
4 3swy_A Cyclic nucleotide-gated 92.7 0.46 1.6E-05 28.0 5.9 42 14-55 4-45 (46)
5 1wyy_A E2 glycoprotein; membra 92.7 0.25 8.6E-06 35.5 5.6 41 17-61 56-98 (149)
6 2pnv_A Small conductance calci 91.0 0.34 1.1E-05 28.1 3.9 34 24-57 7-40 (43)
7 1aq5_A Matrilin-1, CMP, cartil 90.4 0.81 2.8E-05 27.2 5.3 24 33-56 23-46 (47)
8 2ieq_A S glycoprotein, spike g 90.4 0.13 4.4E-06 35.3 2.0 46 15-61 40-90 (109)
9 3n06_A Prolactin, PRL; PH depe 89.2 4.4 0.00015 28.6 9.4 56 12-67 63-128 (186)
10 2pnv_A Small conductance calci 89.2 0.85 2.9E-05 26.4 4.6 36 27-62 3-38 (43)
11 3ci9_A Heat shock factor-bindi 84.7 3.2 0.00011 24.4 5.5 39 21-59 5-43 (48)
12 1pzq_A Erythronolide synthase; 82.8 0.46 1.6E-05 29.3 1.3 22 44-65 9-30 (60)
13 3p8c_D Wiskott-aldrich syndrom 80.9 3.1 0.00011 31.9 5.5 39 15-57 43-81 (279)
14 3iv1_A Tumor susceptibility ge 80.6 9 0.00031 24.5 7.2 46 16-61 5-67 (78)
15 4gif_A Polycystic kidney disea 80.0 6.9 0.00024 22.9 6.1 39 12-55 5-43 (45)
16 3rk6_A Polyadenylate-binding p 79.7 4.5 0.00015 29.3 5.8 53 11-63 14-69 (234)
17 3nmd_A CGMP dependent protein 79.6 8.4 0.00029 24.4 6.4 53 4-64 12-64 (72)
18 1zva_A E2 glycoprotein; membra 79.6 2.3 7.9E-05 27.6 3.8 22 17-38 13-34 (77)
19 3p8c_E Probable protein brick1 72.3 16 0.00055 23.2 7.3 48 15-62 20-67 (75)
20 1jek_B ENV polyprotein; envelo 71.3 3.3 0.00011 23.3 2.5 18 47-64 7-24 (36)
21 2er8_A Regulatory protein Leu3 68.7 2.2 7.7E-05 24.7 1.5 20 40-59 49-68 (72)
22 2zvf_A Alanyl-tRNA synthetase; 68.7 3.2 0.00011 27.7 2.5 43 20-62 12-54 (171)
23 1t3j_A Mitofusin 1; coiled coi 67.5 6 0.0002 26.2 3.6 34 24-57 31-64 (96)
24 2yru_A Steroid receptor RNA ac 67.4 5 0.00017 26.9 3.2 39 12-57 14-53 (118)
25 2yko_A LINE-1 ORF1P; RNA-bindi 67.1 3.8 0.00013 30.9 2.8 21 42-62 29-49 (233)
26 1f6f_A Placental lactogen; 4-h 66.1 33 0.0011 24.4 8.7 54 11-64 77-140 (199)
27 3hrn_A Transient receptor pote 64.2 23 0.0008 22.0 6.2 38 13-55 5-42 (64)
28 2ba2_A D12_ORF131, hypothetica 62.7 3.9 0.00013 26.9 1.9 17 37-53 68-84 (85)
29 3te3_A Polycystic kidney disea 62.5 6.7 0.00023 22.3 2.7 19 45-63 12-30 (39)
30 3pp5_A BRK1, protein brick1; t 61.4 28 0.00095 22.0 7.3 47 15-61 20-66 (73)
31 1use_A VAsp, vasodilator-stimu 61.1 22 0.00076 20.8 6.0 32 11-42 4-35 (45)
32 2lme_A Adhesin YADA; trimeric 60.9 8.8 0.0003 24.8 3.4 23 39-61 15-37 (105)
33 1lwu_B Fibrinogen beta chain; 60.2 12 0.0004 28.8 4.5 48 16-63 7-58 (323)
34 4a25_A DPS, ferritin DPS famil 58.5 13 0.00044 25.4 4.1 30 24-53 55-84 (169)
35 1zme_C Proline utilization tra 58.4 13 0.00045 21.0 3.6 21 42-62 46-66 (70)
36 2cf7_A DPR; peroxide resistanc 58.2 27 0.00091 23.5 5.6 44 24-67 48-95 (165)
37 3iyn_Q Protein IX, PIX, hexon- 54.4 17 0.00059 25.6 4.2 28 37-64 102-129 (140)
38 3efg_A Protein SLYX homolog; x 54.1 3.9 0.00013 25.7 0.7 19 46-64 41-59 (78)
39 1t72_A Phosphate transport sys 53.7 47 0.0016 22.2 6.5 48 15-62 22-69 (227)
40 3uul_A Utrophin; spectrin repe 53.6 33 0.0011 20.4 5.4 16 20-35 83-98 (118)
41 1hwt_C Protein (heme activator 52.5 5 0.00017 23.5 1.1 21 40-60 58-78 (81)
42 1jcd_A Major outer membrane li 52.0 28 0.00094 20.6 4.3 25 37-61 8-32 (52)
43 2fjc_A Antigen TPF1; mini ferr 51.8 17 0.00059 24.0 3.8 30 24-53 44-73 (156)
44 3ghg_A Fibrinogen alpha chain; 51.7 39 0.0013 28.6 6.5 16 47-62 131-146 (562)
45 2chp_A MRGA, metalloregulation 51.4 18 0.00061 23.9 3.8 44 24-67 43-90 (153)
46 3aj1_A Cellulose synthase oper 51.3 49 0.0017 23.8 6.3 48 15-64 20-79 (167)
47 2gr7_A Adhesin; trimeric autot 51.2 44 0.0015 22.5 5.8 44 12-67 23-70 (129)
48 2bk6_A Non-heme iron-containin 50.6 19 0.00064 23.8 3.8 30 24-53 39-68 (156)
49 3iq1_A DPS family protein; csg 50.5 19 0.00064 23.9 3.8 44 24-67 49-96 (159)
50 3rmi_A Chorismate mutase prote 50.5 32 0.0011 22.4 4.9 30 33-62 5-34 (114)
51 2wuj_A Septum site-determining 50.2 23 0.00078 20.6 3.7 32 20-55 25-56 (57)
52 1kmi_Z CHEZ, chemotaxis protei 49.9 7.5 0.00026 28.2 1.8 34 31-67 141-174 (214)
53 3ak8_A DNA protection during s 49.4 19 0.00067 24.2 3.8 30 24-53 59-88 (167)
54 2gtl_O Extracellular hemoglobi 49.2 4.1 0.00014 30.1 0.3 20 40-59 5-24 (215)
55 3gwk_C SAG1039, putative uncha 49.0 39 0.0013 19.9 5.1 14 31-44 20-33 (98)
56 2yjk_A AFP, DPS; metal-binding 48.7 21 0.0007 23.8 3.8 30 24-53 51-80 (161)
57 1rtm_1 Mannose-binding protein 48.7 22 0.00075 22.4 3.8 25 38-62 2-26 (149)
58 2z90_A Starvation-inducible DN 48.6 21 0.0007 23.9 3.8 30 24-53 49-78 (161)
59 2z9e_A Cellulose synthase oper 48.0 74 0.0025 22.8 7.3 47 16-64 21-79 (167)
60 2l3l_A Tubulin-specific chaper 47.3 54 0.0019 21.5 5.6 20 39-58 57-76 (111)
61 2c2j_A DNA-binding stress resp 47.2 20 0.0007 25.7 3.8 30 24-53 78-107 (211)
62 4eve_A Neutrophil-activating p 47.2 26 0.00088 23.7 4.1 44 24-67 53-100 (164)
63 3kwo_A Putative bacterioferrit 47.1 27 0.00091 23.0 4.1 44 24-67 36-83 (152)
64 1sfc_A VAMP 2, protein (synapt 47.0 53 0.0018 20.9 6.3 22 42-63 53-74 (96)
65 2fxo_A Myosin heavy chain, car 46.8 59 0.002 21.3 7.3 24 39-62 82-105 (129)
66 2wlu_A DPS-like peroxide resis 46.7 22 0.00076 24.2 3.8 30 24-53 58-87 (175)
67 3f42_A Protein HP0035; helicob 46.2 20 0.00067 23.3 3.2 21 20-40 8-28 (99)
68 2yw6_A DNA protection during s 45.6 24 0.00081 24.3 3.8 30 24-53 47-76 (183)
69 2xz3_A Maltose ABC transporter 45.5 53 0.0018 24.7 6.0 31 29-59 375-405 (463)
70 3opc_A Uncharacterized protein 45.1 62 0.0021 21.1 7.5 51 17-67 17-75 (154)
71 4ioe_A Secreted protein ESXB; 44.9 36 0.0012 19.7 4.1 15 41-55 64-78 (93)
72 3uno_A Probable bacterioferrit 44.5 76 0.0026 21.9 7.2 36 38-77 142-177 (189)
73 1m1j_C Fibrinogen gamma chain; 44.3 1.2E+02 0.004 24.1 8.0 54 9-63 75-135 (409)
74 2hn1_A CORA, magnesium and cob 44.3 28 0.00097 24.3 4.1 18 39-56 186-203 (266)
75 3eh0_A UDP-3-O-[3-hydroxymyris 44.2 10 0.00035 28.0 1.8 24 36-59 317-340 (341)
76 1o9r_A Agrobacterium tumefacie 44.0 32 0.0011 22.8 4.1 30 24-53 48-77 (162)
77 3coq_A Regulatory protein GAL4 43.6 23 0.00079 20.7 3.1 21 41-61 46-66 (89)
78 1pyi_A Protein (pyrimidine pat 43.5 24 0.00083 21.1 3.2 19 41-59 49-67 (96)
79 1ji5_A DLP-1; dodecamer, four- 42.9 37 0.0013 21.3 4.1 31 24-54 32-62 (142)
80 3pmo_A UDP-3-O-[3-hydroxymyris 42.7 14 0.00046 28.0 2.3 23 37-59 340-362 (372)
81 1l4a_A Synaptobrevin; snare, s 42.3 45 0.0015 20.3 4.3 22 42-63 38-59 (80)
82 2c41_A DPS family DNA-binding 42.2 36 0.0012 22.1 4.1 30 24-53 41-70 (158)
83 2xz3_A Maltose ABC transporter 41.6 73 0.0025 23.9 6.2 43 21-63 359-402 (463)
84 1n1q_A DPS protein; four-helix 41.2 39 0.0013 21.5 4.1 30 24-53 39-68 (149)
85 1jig_A DLP-2; dodecamer, four- 41.0 40 0.0014 21.3 4.1 30 24-53 36-65 (146)
86 1sz7_A BET3 homolog, trafficki 40.8 36 0.0012 24.6 4.2 34 16-50 28-61 (200)
87 2pyb_A NAPA, neutrophil activa 39.6 17 0.00059 23.9 2.2 30 24-53 36-65 (151)
88 1xwm_A PHOU, phosphate uptake 39.3 84 0.0029 20.9 6.6 49 14-62 17-65 (217)
89 2i0m_A Phosphate transport sys 39.3 83 0.0028 20.9 6.7 49 15-63 18-66 (216)
90 2xgw_A Peroxide resistance pro 39.0 33 0.0011 24.2 3.8 30 24-53 74-103 (199)
91 1lwu_C Fibrinogen gamma chain; 38.6 1.2E+02 0.004 23.4 7.0 27 38-64 31-57 (323)
92 1tjo_A Iron-rich DPSA-homolog 38.6 42 0.0014 22.7 4.1 44 24-67 60-107 (182)
93 3oj5_A Ferritin family protein 38.5 87 0.003 20.9 6.2 45 29-77 133-177 (189)
94 3qne_A Seryl-tRNA synthetase, 38.1 1E+02 0.0036 24.9 7.0 57 20-76 45-119 (485)
95 1n7s_A Vesicle-associated memb 38.0 58 0.002 18.8 6.3 22 42-63 27-48 (63)
96 1lwu_C Fibrinogen gamma chain; 37.9 90 0.0031 24.0 6.3 18 39-56 39-56 (323)
97 2d4y_A HAP1, flagellar HOOK-as 37.8 1.4E+02 0.0047 23.0 7.4 41 24-64 80-120 (463)
98 2oqq_A Transcription factor HY 37.6 59 0.002 18.7 4.2 25 38-62 8-32 (42)
99 4akv_A Sorting nexin-33; trans 37.6 89 0.0031 23.8 6.2 38 24-61 325-363 (386)
100 2c2u_A DPS, DNA-binding stress 37.5 29 0.00098 24.7 3.2 43 24-66 91-137 (207)
101 3okg_A Restriction endonucleas 37.1 82 0.0028 22.4 5.6 35 28-62 177-211 (412)
102 1sum_B Phosphate transport sys 36.8 98 0.0034 21.0 7.0 49 15-63 18-66 (235)
103 2yo3_A General control protein 36.7 1.4E+02 0.0048 22.8 7.2 47 12-58 199-255 (268)
104 1huw_A Human growth hormone; 2 36.7 21 0.00073 25.3 2.5 55 11-65 70-130 (191)
105 3nvo_A Zinc transport protein 36.3 22 0.00076 24.7 2.5 32 18-56 147-178 (264)
106 1t72_A Phosphate transport sys 36.3 95 0.0032 20.7 6.7 50 12-61 122-171 (227)
107 4egw_A Magnesium transport pro 35.8 36 0.0012 24.1 3.6 19 19-37 157-175 (280)
108 3hnw_A Uncharacterized protein 35.4 69 0.0024 21.6 4.8 53 10-62 27-97 (138)
109 2nrj_A HBL B protein; enteroto 34.7 1.2E+02 0.0041 23.0 6.5 33 31-63 160-192 (346)
110 2zdi_C Prefoldin subunit alpha 34.7 69 0.0024 21.1 4.6 32 29-60 19-53 (151)
111 3lt7_A Adhesin YADA; adhesion, 34.4 73 0.0025 19.7 4.3 21 40-60 34-54 (64)
112 2bbh_A Divalent cation transpo 34.0 31 0.0011 24.0 2.9 20 20-39 173-192 (269)
113 3uun_A Dystrophin; triple heli 34.0 73 0.0025 18.7 5.7 16 38-53 83-98 (119)
114 2bjn_A TPC6, trafficking prote 33.7 19 0.00066 24.7 1.8 33 17-49 10-45 (160)
115 4i0x_B ESAT-6-like protein MAB 33.6 81 0.0028 19.1 5.1 21 31-51 23-43 (103)
116 2d5k_A DPS, DPS family protein 33.4 60 0.002 21.1 4.1 30 24-53 38-67 (156)
117 1fxk_C Protein (prefoldin); ar 33.3 94 0.0032 19.8 5.8 35 27-61 9-43 (133)
118 3mq9_A Bone marrow stromal ant 33.3 1.5E+02 0.0052 22.2 7.8 14 19-32 401-414 (471)
119 2yko_A LINE-1 ORF1P; RNA-bindi 32.3 20 0.00068 26.9 1.8 25 37-61 3-27 (233)
120 2h8e_A Crossover junction endo 32.0 27 0.00093 22.3 2.2 18 49-66 71-88 (120)
121 1hs7_A Syntaxin VAM3; UP-and-D 31.8 59 0.002 21.1 3.8 45 12-57 4-58 (97)
122 1avy_A Fibritin, gpwac M; bact 31.7 1E+02 0.0035 19.6 5.2 27 36-62 18-44 (74)
123 3rrk_A V-type ATPase 116 kDa s 31.6 97 0.0033 22.6 5.4 26 36-61 102-127 (357)
124 1yf2_A Type I restriction-modi 31.1 1.4E+02 0.0047 21.0 6.0 37 27-63 380-416 (425)
125 2dq0_A Seryl-tRNA synthetase; 30.7 2E+02 0.0067 22.7 8.5 57 20-76 43-117 (455)
126 1cnt_1 CNTF, ciliary neurotrop 30.4 73 0.0025 23.4 4.5 53 20-72 87-139 (187)
127 1xwm_A PHOU, phosphate uptake 30.1 1.1E+02 0.0039 20.2 5.2 48 13-60 119-166 (217)
128 2ovc_A Potassium voltage-gated 29.6 39 0.0013 18.4 2.2 21 38-58 8-28 (33)
129 1ses_A Seryl-tRNA synthetase; 29.6 1.4E+02 0.005 23.1 6.3 57 20-76 40-112 (421)
130 1urq_A M-tomosyn isoform; tran 29.6 92 0.0031 18.5 6.3 25 39-63 24-48 (63)
131 3hd7_A Vesicle-associated memb 29.5 1E+02 0.0036 19.1 6.3 18 46-63 32-49 (91)
132 1deq_A Fibrinogen (alpha chain 29.4 1.3E+02 0.0045 24.2 6.1 35 28-62 108-149 (390)
133 2dq3_A Seryl-tRNA synthetase; 29.2 1.9E+02 0.0065 22.4 6.9 57 20-76 42-116 (425)
134 3dyt_A Sorting nexin-9; 3-heli 29.2 1.5E+02 0.0052 22.1 6.2 38 24-61 305-343 (366)
135 2vxx_A Starvation induced DNA 29.0 74 0.0025 21.4 4.1 31 24-54 59-89 (192)
136 2nps_A VAMP-4, vesicle-associa 28.9 95 0.0033 18.5 4.6 18 46-63 35-52 (74)
137 1sig_A Sigma70, RNA polymerase 28.7 1.6E+02 0.0054 21.4 6.1 32 34-65 156-188 (339)
138 3t98_B Nucleoporin NUP58/NUP45 28.4 84 0.0029 20.1 4.1 30 31-60 10-39 (93)
139 1ygt_A Cytoplasmic dynein ligh 28.4 82 0.0028 19.9 4.0 20 8-27 7-26 (111)
140 2w83_C C-JUN-amino-terminal ki 28.4 1.2E+02 0.0041 19.4 8.1 46 12-57 3-54 (77)
141 1fxk_A Prefoldin; archaeal pro 28.3 1E+02 0.0035 18.6 6.3 22 40-61 79-100 (107)
142 1x8y_A Lamin A/C; structural p 27.5 1.1E+02 0.0038 18.8 4.5 35 20-61 15-49 (86)
143 3mq9_A Bone marrow stromal ant 27.4 1.9E+02 0.0067 21.6 8.5 23 42-64 399-421 (471)
144 1m1j_B Fibrinogen beta chain; 27.0 2.5E+02 0.0086 22.7 8.0 25 39-63 174-198 (464)
145 1wle_A Seryl-tRNA synthetase; 27.0 2.5E+02 0.0084 22.6 8.4 39 38-76 121-164 (501)
146 1sum_B Phosphate transport sys 27.0 1.3E+02 0.0043 20.5 5.0 48 12-59 118-165 (235)
147 3s84_A Apolipoprotein A-IV; fo 26.7 1.9E+02 0.0065 21.2 6.7 48 13-60 200-247 (273)
148 3he4_A Synzip6; heterodimeric 26.6 95 0.0032 18.5 3.8 25 36-60 23-51 (56)
149 3na7_A HP0958; flagellar bioge 26.4 87 0.003 22.3 4.3 24 40-63 97-120 (256)
150 1gl2_A Endobrevin; membrane pr 26.2 1E+02 0.0035 17.9 6.3 20 44-63 34-53 (65)
151 2c5k_T Syntaxin TLG1, T-snare 25.9 1.3E+02 0.0044 19.0 5.7 45 14-58 9-61 (95)
152 2dl1_A Spartin; SPG20, MIT, st 25.7 1.6E+02 0.0053 19.9 5.9 22 36-57 78-99 (116)
153 2i0m_A Phosphate transport sys 25.7 1.5E+02 0.0051 19.6 5.8 48 13-60 119-166 (216)
154 2zqm_A Prefoldin beta subunit 25.6 1.2E+02 0.0041 18.5 6.1 24 38-61 89-112 (117)
155 1buu_A Protein (mannose-bindin 25.6 83 0.0028 20.3 3.8 19 41-59 24-42 (168)
156 2y7c_A Type-1 restriction enzy 25.3 94 0.0032 22.3 4.3 18 38-55 381-398 (464)
157 2zdi_C Prefoldin subunit alpha 25.3 1.5E+02 0.0051 19.5 5.1 47 12-62 95-141 (151)
158 1gs9_A Apolipoprotein E, APOE4 25.2 50 0.0017 22.8 2.7 18 36-53 62-79 (165)
159 1ydx_A Type I restriction enzy 25.1 1.9E+02 0.0065 20.7 6.0 36 28-63 357-392 (406)
160 3r2k_A Bacterioferritin, BFR; 24.7 76 0.0026 20.0 3.3 29 24-52 37-65 (154)
161 2clb_A DPS-like protein; DI-ir 24.7 56 0.0019 22.3 2.9 29 25-53 57-85 (188)
162 1ecm_A Endo-oxabicyclic transi 24.7 58 0.002 20.4 2.7 21 42-62 7-27 (109)
163 2iub_A CORA, divalent cation t 24.1 72 0.0025 23.7 3.6 27 19-45 181-207 (363)
164 2e9x_C GINS complex subunit 3; 23.9 56 0.0019 23.5 2.9 43 17-59 135-181 (219)
165 1yf2_A Type I restriction-modi 23.8 1.9E+02 0.0066 20.2 5.6 36 28-63 171-206 (425)
166 1m1j_A Fibrinogen alpha subuni 23.5 3.2E+02 0.011 22.7 7.6 38 25-62 103-147 (491)
167 1bgf_A STAT-4; transcription f 23.5 87 0.003 20.9 3.6 25 12-36 50-74 (124)
168 1woz_A 177AA long conserved hy 23.4 1.1E+02 0.0037 21.5 4.2 42 20-63 50-96 (177)
169 2xze_Q Charged multivesicular 23.3 47 0.0016 18.8 1.9 14 21-34 25-38 (40)
170 1flk_A TNF receptor associated 23.3 1.9E+02 0.0066 20.1 5.6 32 25-60 39-70 (228)
171 3cue_B Transport protein parti 23.3 76 0.0026 24.4 3.6 35 14-49 60-94 (283)
172 3v1a_A Computational design, M 23.1 48 0.0016 19.4 1.9 19 40-62 24-42 (48)
173 1p68_A De novo designed protei 22.9 1.7E+02 0.0057 19.2 6.1 53 9-61 26-94 (102)
174 1nog_A Conserved hypothetical 22.8 1.1E+02 0.0039 21.4 4.2 42 20-63 51-97 (177)
175 2yo3_A General control protein 22.7 2.6E+02 0.0088 21.3 8.4 40 23-62 206-245 (268)
176 2qqy_A Sigma B operon; dodecam 22.6 1.3E+02 0.0045 18.3 4.1 28 25-52 42-69 (149)
177 1fzc_B Fibrin; blood coagulati 22.5 30 0.001 26.6 1.2 25 39-63 36-60 (328)
178 1yzm_A FYVE-finger-containing 22.2 50 0.0017 19.5 1.9 19 40-62 25-43 (51)
179 3b5n_A Synaptobrevin homolog 1 22.1 1.2E+02 0.0042 17.3 6.3 20 44-63 27-46 (61)
180 3g67_A Methyl-accepting chemot 22.0 2.2E+02 0.0075 20.2 7.5 10 15-24 11-20 (213)
181 1szq_A 2-methylcitrate dehydra 21.8 1.1E+02 0.0039 23.9 4.4 37 25-61 437-479 (483)
182 2xhe_A UNC18; exocytosis, exoc 21.7 1.6E+02 0.0055 23.7 5.4 49 9-57 320-373 (650)
183 3tul_A Cell invasion protein S 21.6 2.3E+02 0.0078 20.3 8.5 58 12-69 21-98 (158)
184 2l5g_B Putative uncharacterize 21.5 1E+02 0.0035 17.7 3.1 14 41-54 24-37 (42)
185 4fm3_A Uncharacterized hypothe 21.3 62 0.0021 21.2 2.4 17 48-64 79-95 (98)
186 3lss_A Seryl-tRNA synthetase; 21.3 3.2E+02 0.011 22.0 7.0 34 42-75 113-151 (484)
187 3viq_B Mating-type switching p 21.3 1.4E+02 0.0048 19.1 4.1 28 36-63 4-31 (85)
188 3puk_A Syntaxin-binding protei 21.0 1.2E+02 0.0041 24.5 4.5 48 10-57 321-373 (592)
189 3zrx_A AF1503 protein, osmolar 20.9 1.2E+02 0.004 16.7 4.8 15 15-29 41-55 (115)
190 1zs3_A Lactococcus lactis Mg13 20.9 93 0.0032 21.7 3.4 25 28-52 58-82 (182)
191 1zuj_A Hypothetical protein ll 20.9 93 0.0032 21.6 3.4 41 28-68 57-102 (179)
192 2akf_A Coronin-1A; coiled coil 20.8 1.1E+02 0.0039 16.5 3.2 10 47-56 20-29 (32)
193 2dae_A KIAA0733 protein; mitog 20.8 24 0.00082 22.6 0.3 41 22-64 12-52 (75)
194 3uoi_A Bacterioferritin, BFR; 20.7 1E+02 0.0035 19.4 3.3 29 24-52 39-67 (161)
195 2jmh_A BLO T 5, mite allergen 20.6 1.7E+02 0.0059 20.0 4.6 29 23-55 20-48 (119)
196 3mq1_A Mite allergen DER P 5; 20.5 1.1E+02 0.0036 20.6 3.5 29 23-55 5-33 (103)
197 3r2v_A PB2 C-terminal subunit; 20.5 87 0.003 23.2 3.3 33 7-39 46-79 (216)
198 3mtu_E Head morphogenesis prot 20.3 1.3E+02 0.0046 19.0 3.8 13 22-34 30-42 (77)
199 2d8d_A Aroag, phospho-2-dehydr 20.3 1E+02 0.0035 18.5 3.2 21 42-62 5-25 (90)
200 3emo_C HIA (adhesin); transmem 20.2 2.2E+02 0.0077 19.7 7.3 28 38-65 70-101 (162)
No 1
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=99.94 E-value=4.2e-28 Score=147.01 Aligned_cols=48 Identities=54% Similarity=0.845 Sum_probs=43.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 034704 10 KQNTADMTAFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSIN 57 (86)
Q Consensus 10 ~~s~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~ 57 (86)
|++++|||+||++||+|||+||++||++|++||||||+|||+||+||+
T Consensus 1 p~~~~dLt~~vq~LL~qmq~kFq~mS~~I~~riDdM~~RIDdLE~si~ 48 (48)
T 3ci9_A 1 PKTVQDLTSVVQTLLQQMQDKFQTISDQIIGRIDDMSSRIDDLEKNIA 48 (48)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcC
Confidence 579999999999999999999999999999999999999999999985
No 2
>2bez_C E2 glycoprotein; coiled coil, membrane fusion, severe acute respiratory syndrome, viral protein; 1.6A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1zv8_A 1zvb_A
Probab=95.43 E-value=0.037 Score=36.09 Aligned_cols=34 Identities=26% Similarity=0.527 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 034704 17 TAFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQ 54 (86)
Q Consensus 17 T~~Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEk 54 (86)
.+.+..|+.|++..|+.+|.. |.|.-.|+|.||.
T Consensus 43 ~~aL~~L~~qL~~NFgAISss----i~dIy~RLd~leA 76 (77)
T 2bez_C 43 AQALNTLVKQLSSNFGAISSV----LNDILSRLDKVEA 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHH----HHHHHHHHHhhhc
Confidence 456788999999999997765 5689999999996
No 3
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=95.08 E-value=0.23 Score=31.94 Aligned_cols=52 Identities=12% Similarity=0.220 Sum_probs=41.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 034704 12 NTADMTAFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEM 63 (86)
Q Consensus 12 s~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm~qa 63 (86)
+..+-..-+++-|+.||.||..+-.+.-+-=--|-.||-.||+.+..+...-
T Consensus 4 dlEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~~~~~~~~ 55 (74)
T 3swf_A 4 GLEEKVTRMESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKFLKPLIDTE 55 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCc
Confidence 4566677888999999999998777766666677899999999999876543
No 4
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=92.73 E-value=0.46 Score=27.96 Aligned_cols=42 Identities=21% Similarity=0.309 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 034704 14 ADMTAFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQS 55 (86)
Q Consensus 14 ~dLT~~Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEks 55 (86)
.|-..-+++-|+.||.||..+-.+.-+-=--|-.||-.||+.
T Consensus 4 Eekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~lE~~ 45 (46)
T 3swy_A 4 EEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455566788899999999987766666556677889999875
No 5
>1wyy_A E2 glycoprotein; membrane fusion, severe acute respiratory syndrome, viral PR; 2.20A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1wnc_A 2fxp_A
Probab=92.70 E-value=0.25 Score=35.47 Aligned_cols=41 Identities=27% Similarity=0.512 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH--HHHHHH
Q 034704 17 TAFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQS--INDLRS 61 (86)
Q Consensus 17 T~~Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEks--I~dLm~ 61 (86)
.+.+..|+.|+...|+.+|.. |.|.-.|+|.||+. +.-|++
T Consensus 56 ~~aL~~l~~qL~~nFgAISss----i~dIy~rLd~leAdaQVDRLIt 98 (149)
T 1wyy_A 56 AQALNTLVKQLSSNFGAISSV----LNDILSRLDKVEAEVQIDRLIT 98 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHhhhHHHHH----HHHHHHHHHHHHHHHHHHHHHh
Confidence 456788999999999997765 56899999999975 444544
No 6
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=91.00 E-value=0.34 Score=28.15 Aligned_cols=34 Identities=24% Similarity=0.339 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 034704 24 LQQMQSRFQTMSESIIAKIDEMGSRIDELEQSIN 57 (86)
Q Consensus 24 LqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~ 57 (86)
+-.|..-+++=++.+=.||+-|..|+|.|..++.
T Consensus 7 mydlvsel~~r~e~LE~Ri~~LE~KLd~L~~~l~ 40 (43)
T 2pnv_A 7 MYDMISDLNERSEDFEKRIVTLETKLETLIGSIH 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344445556666666666666554
No 7
>1aq5_A Matrilin-1, CMP, cartilage matrix protein; coiled-coil, heptad repeat, interchain disulfide bonds, oligomerization domain, trimer; NMR {Gallus gallus} SCOP: h.1.6.1
Probab=90.43 E-value=0.81 Score=27.17 Aligned_cols=24 Identities=25% Similarity=0.538 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHH
Q 034704 33 TMSESIIAKIDEMGSRIDELEQSI 56 (86)
Q Consensus 33 tmS~~I~~RiDeMgsRIDdLEksI 56 (86)
+.-..+..|+++|+.||..||+.|
T Consensus 23 ~~l~~Lt~kL~~vt~rle~lEnrl 46 (47)
T 1aq5_A 23 ELINTLQQKLEAVAKRIEALENKI 46 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333445566789999999999876
No 8
>2ieq_A S glycoprotein, spike glycoprotein, peplomer protein, E2; membrane fusion, virus entry, six-HEL bundle, viral protein; 1.75A {Human coronavirus}
Probab=90.42 E-value=0.13 Score=35.33 Aligned_cols=46 Identities=17% Similarity=0.234 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhhhHHHHHHHHHHHHH
Q 034704 15 DMTAFVQNLLQQMQSRFQTMSESIIAKID-----EMGSRIDELEQSINDLRS 61 (86)
Q Consensus 15 dLT~~Vq~LLqQmQ~kFqtmS~~I~~RiD-----eMgsRIDdLEksI~dLm~ 61 (86)
+....+..|++|+...|+..|..|- +|= +..+|||.||..-..|.+
T Consensus 40 ~q~~aLs~ll~QLn~NF~A~s~~lq-~~fn~t~lni~~elD~LEa~A~~l~~ 90 (109)
T 2ieq_A 40 QQGSALNHLTSQLRHNFQSGGRGSG-RGGNLTYLNLSSELKQLEAKTASLFQ 90 (109)
T ss_dssp HHHHHHHHHHCCC------------------CCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCcchHHH-HHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4556778888888888988777664 331 667888889888777764
No 9
>3n06_A Prolactin, PRL; PH dependence, hematopoietic cytokine, hormone-hormone recep complex; 2.00A {Homo sapiens} PDB: 3nce_A 3mzg_A 3ncc_A 2q98_A 3d48_P 3ncb_A 3n0p_A 3ncf_A 1n9d_A 1rw5_A 3npz_A 3ew3_A
Probab=89.24 E-value=4.4 Score=28.57 Aligned_cols=56 Identities=18% Similarity=0.301 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHHHHHHHH-------HHH---HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCC
Q 034704 12 NTADMTAFVQNLLQQMQS-------RFQ---TMSESIIAKIDEMGSRIDELEQSINDLRSEMGIEG 67 (86)
Q Consensus 12 s~~dLT~~Vq~LLqQmQ~-------kFq---tmS~~I~~RiDeMgsRIDdLEksI~dLm~qaG~e~ 67 (86)
+..+|..++-.||+-..+ -+. ..++.|+.|.-++..++.+|++-|..++.+.+...
T Consensus 63 s~~~LL~~~l~Ll~SW~~PL~~L~~~~~~l~~~~~~il~Kakei~e~~~~L~egi~~i~~~~~~~~ 128 (186)
T 3n06_A 63 NQKDFLSLIVSILRSWNEPLYHLVTEVRGMQEAPEAILSKAVEIEEQTKRLLERMELIVSQVHPET 128 (186)
T ss_dssp CHHHHHHHHHHHHHHTHHHHHHHHHHHHTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 467888888877754433 332 34689999999999999999999999999886543
No 10
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=89.18 E-value=0.85 Score=26.41 Aligned_cols=36 Identities=17% Similarity=0.241 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 034704 27 MQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSE 62 (86)
Q Consensus 27 mQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm~q 62 (86)
||+.--.|-..+-+|=+++-.||+.||..+.+|-..
T Consensus 3 mQn~mydlvsel~~r~e~LE~Ri~~LE~KLd~L~~~ 38 (43)
T 2pnv_A 3 HMNIMYDMISDLNERSEDFEKRIVTLETKLETLIGS 38 (43)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 666666777888899999999999999999988764
No 11
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=84.75 E-value=3.2 Score=24.41 Aligned_cols=39 Identities=31% Similarity=0.484 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 034704 21 QNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDL 59 (86)
Q Consensus 21 q~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dL 59 (86)
+.|-.-+|+=++.|.+.+-+-=+.+-+|||+.-..|.+|
T Consensus 5 ~dLt~~vq~LL~qmq~kFq~mS~~I~~riDdM~~RIDdL 43 (48)
T 3ci9_A 5 QDLTSVVQTLLQQMQDKFQTISDQIIGRIDDMSSRIDDL 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 445555566666666665555566667899999999886
No 12
>1pzq_A Erythronolide synthase; four helix bundle, homodimer, transferase; NMR {Saccharopolyspora erythraea} SCOP: a.34.3.1
Probab=82.84 E-value=0.46 Score=29.26 Aligned_cols=22 Identities=41% Similarity=0.782 Sum_probs=18.6
Q ss_pred HHhhhHHHHHHHHHHHHHhhcc
Q 034704 44 EMGSRIDELEQSINDLRSEMGI 65 (86)
Q Consensus 44 eMgsRIDdLEksI~dLm~qaG~ 65 (86)
++|.|+|+|||.+..|-.+-|-
T Consensus 9 digdrldelekalealsaedgh 30 (60)
T 1pzq_A 9 DIGDRLDELEKALEALSAEDGH 30 (60)
T ss_dssp TTHHHHHHHHHHHHHHTTSSCC
T ss_pred chhhHHHHHHHHHHHhcccccc
Confidence 5789999999999998777664
No 13
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=80.88 E-value=3.1 Score=31.94 Aligned_cols=39 Identities=10% Similarity=0.423 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 034704 15 DMTAFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSIN 57 (86)
Q Consensus 15 dLT~~Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~ 57 (86)
+|+.+..++++.|..-|.. |..|+..+..||+.|+..+.
T Consensus 43 dLs~~A~dIF~eL~~e~~~----~~~R~~~L~~RI~~L~~~v~ 81 (279)
T 3p8c_D 43 SLSKYAEDIFGELFNEAHS----FSFRVNSLQERVDRLSVSVT 81 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhcc
Confidence 4444444444444444433 45677778888888887775
No 14
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=80.60 E-value=9 Score=24.54 Aligned_cols=46 Identities=24% Similarity=0.445 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHhhhHH----HHHHHHHHHHH
Q 034704 16 MTAFVQNLLQQMQSRFQTMSESII-------------AKIDEMGSRID----ELEQSINDLRS 61 (86)
Q Consensus 16 LT~~Vq~LLqQmQ~kFqtmS~~I~-------------~RiDeMgsRID----dLEksI~dLm~ 61 (86)
|+++=+.|=..|+.+|...+..|- .||++|-+||+ +|++||.-|-.
T Consensus 5 lSAVeDKLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~ 67 (78)
T 3iv1_A 5 ISAVSDKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKK 67 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666778888877777664 46788877775 68888876643
No 15
>4gif_A Polycystic kidney disease 2-like 1 protein; coiled-coil, trimer, Trp channel, transient receptor potenti channel, polycystic kidney disease (PKD); 2.80A {Homo sapiens}
Probab=80.04 E-value=6.9 Score=22.89 Aligned_cols=39 Identities=26% Similarity=0.553 Sum_probs=26.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 034704 12 NTADMTAFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQS 55 (86)
Q Consensus 12 s~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEks 55 (86)
|.+|...+...+|| .++.-..|.+|||-+++++.-+|++
T Consensus 5 s~eeF~~L~rRVlq-----lE~~l~gI~S~idav~~Kl~~~Er~ 43 (45)
T 4gif_A 5 SGEEFYMLTRRVLQ-----LETVLEGVVSQIDAVGSKLKMLERK 43 (45)
T ss_dssp CHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred CHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455555555443 4555667889999999999888874
No 16
>3rk6_A Polyadenylate-binding protein-interacting protein; heat fold, PABP, EIF4A, EIF3, translation regulator; 2.00A {Homo sapiens}
Probab=79.72 E-value=4.5 Score=29.30 Aligned_cols=53 Identities=15% Similarity=0.310 Sum_probs=36.8
Q ss_pred CCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 034704 11 QNTADMTAFVQNLLQQMQ---SRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEM 63 (86)
Q Consensus 11 ~s~~dLT~~Vq~LLqQmQ---~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm~qa 63 (86)
...+.|...|..+|+.|- ++|+.++++|+.-+..--+..+.|..=|.-++.+|
T Consensus 14 ~~~~~l~r~v~~iLNkLT~~p~~f~~l~~~i~~~~~~~~~~~~~L~~vi~lIfekA 69 (234)
T 3rk6_A 14 GRGSTLSEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQELVELIYQQA 69 (234)
T ss_dssp ----CHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHccCChhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 456789999999999999 89999999999865433233555666555555554
No 17
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=79.58 E-value=8.4 Score=24.39 Aligned_cols=53 Identities=23% Similarity=0.344 Sum_probs=34.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhc
Q 034704 4 HDSEDPKQNTADMTAFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEMG 64 (86)
Q Consensus 4 ~~~~~~~~s~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm~qaG 64 (86)
.+|-....+..+|-..++.-.++++.| =.+|++.-.+|++.|..|..|-.+..
T Consensus 12 ~~~~~~mgti~eLq~~L~~K~eELr~k--------d~~I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 12 MASIEGRGSLRDLQYALQEKIEELRQR--------DALIDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCCcHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556667766666666666555 24588999999999999999987753
No 18
>1zva_A E2 glycoprotein; membrane fusion, virus entry, coiled C conformational change, viral protein; 1.50A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1zv8_B
Probab=79.56 E-value=2.3 Score=27.57 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 034704 17 TAFVQNLLQQMQSRFQTMSESI 38 (86)
Q Consensus 17 T~~Vq~LLqQmQ~kFqtmS~~I 38 (86)
.+.+..|+.|++..|+.+|..|
T Consensus 13 ~~aL~~L~~qL~~NFgAISSsi 34 (77)
T 1zva_A 13 AQALNTLVKQLSSNFGAISSVL 34 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHH
Confidence 4678899999999999988764
No 19
>3p8c_E Probable protein brick1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=72.30 E-value=16 Score=23.24 Aligned_cols=48 Identities=8% Similarity=0.307 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 034704 15 DMTAFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSE 62 (86)
Q Consensus 15 dLT~~Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm~q 62 (86)
|...+|...+..+-+-...-+...-.|+-.+..||..||++|.=|=++
T Consensus 20 e~ie~in~~I~~~v~FLN~F~~sce~KLa~ln~KL~~LEr~L~iLEAk 67 (75)
T 3p8c_E 20 EYIEIITSSIKKIADFLNSFDMSCRSRLATLNEKLTALERRIEYIEAR 67 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666655445555566778888899999999999766443
No 20
>1jek_B ENV polyprotein; envelope glycoprotein, retrovirus, HIV, SIV, GP41, viral Pro; 1.50A {Synthetic} SCOP: h.3.2.1
Probab=71.27 E-value=3.3 Score=23.29 Aligned_cols=18 Identities=22% Similarity=0.285 Sum_probs=16.2
Q ss_pred hhHHHHHHHHHHHHHhhc
Q 034704 47 SRIDELEQSINDLRSEMG 64 (86)
Q Consensus 47 sRIDdLEksI~dLm~qaG 64 (86)
++|+.|+.+|..|+.+|-
T Consensus 7 reI~~~t~nIy~LLeeAq 24 (36)
T 1jek_B 7 EEIEQHEGNLSLLLREAA 24 (36)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 689999999999999874
No 21
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=68.75 E-value=2.2 Score=24.72 Aligned_cols=20 Identities=25% Similarity=0.551 Sum_probs=15.1
Q ss_pred HHHHHHhhhHHHHHHHHHHH
Q 034704 40 AKIDEMGSRIDELEQSINDL 59 (86)
Q Consensus 40 ~RiDeMgsRIDdLEksI~dL 59 (86)
.+|+++-.||+.||..|..|
T Consensus 49 ~~~~~Le~ri~~Le~~l~~l 68 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLTNL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56777778888888877765
No 22
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=68.67 E-value=3.2 Score=27.66 Aligned_cols=43 Identities=14% Similarity=0.255 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 034704 20 VQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSE 62 (86)
Q Consensus 20 Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm~q 62 (86)
.+.+|.++...|..=.++|..|+..+-.++.+|||.|..|..+
T Consensus 12 ~~~~l~~~a~~Lk~~~~~l~~~v~~l~~e~k~l~ke~~~l~~~ 54 (171)
T 2zvf_A 12 MERLLREASSILRVEPAKLPKTVERFFEEWKDQRKEIERLKSV 54 (171)
T ss_dssp HHHHHHHHHHTTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777776444688999999999999999999888765
No 23
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=67.47 E-value=6 Score=26.23 Aligned_cols=34 Identities=18% Similarity=0.355 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 034704 24 LQQMQSRFQTMSESIIAKIDEMGSRIDELEQSIN 57 (86)
Q Consensus 24 LqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~ 57 (86)
-+.|..-|..+..++=.--.||-..|++|++.|+
T Consensus 31 QqELs~tfarLc~~Vd~t~~eL~~EI~~L~~eI~ 64 (96)
T 1t3j_A 31 QQEMATTFARLCQQVDMTQKHLEEEIARLSKEID 64 (96)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555444555555555555444
No 24
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=67.38 E-value=5 Score=26.89 Aligned_cols=39 Identities=13% Similarity=0.178 Sum_probs=22.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhHHHHHHHHH
Q 034704 12 NTADMTAFVQNLLQQMQSRFQTMSESIIAK-IDEMGSRIDELEQSIN 57 (86)
Q Consensus 12 s~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~R-iDeMgsRIDdLEksI~ 57 (86)
-..+|...++.+|+- + +.....| +||+.+||+-|...++
T Consensus 14 ~i~~l~~~l~~~l~~----~---~~~~~k~~~~D~~KRL~~LfdkLn 53 (118)
T 2yru_A 14 LIEDVLRPLEQALED----C---HGHTKKQVCDDISRRLALLREQWA 53 (118)
T ss_dssp CHHHHHHHHHHHHHH----H---HTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH----h---hhHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555554442 2 2233444 7999999988877654
No 25
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=67.08 E-value=3.8 Score=30.92 Aligned_cols=21 Identities=24% Similarity=0.161 Sum_probs=12.7
Q ss_pred HHHHhhhHHHHHHHHHHHHHh
Q 034704 42 IDEMGSRIDELEQSINDLRSE 62 (86)
Q Consensus 42 iDeMgsRIDdLEksI~dLm~q 62 (86)
......||..||.++.||-.-
T Consensus 29 eq~~ekrik~ne~sL~dL~d~ 49 (233)
T 2yko_A 29 GKFREKRIKRNEQSLQEIWDY 49 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 344556666666666666554
No 26
>1f6f_A Placental lactogen; 4-helical bundle, alpha helical bundle, ternary complex, FN III domains, beta sheet domains, cytokine-receptor complex; 2.30A {Ovis aries} SCOP: a.26.1.1
Probab=66.06 E-value=33 Score=24.43 Aligned_cols=54 Identities=13% Similarity=0.258 Sum_probs=41.4
Q ss_pred CCHHHHHHHHHHHHH-------HHHHHHHH---HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhc
Q 034704 11 QNTADMTAFVQNLLQ-------QMQSRFQT---MSESIIAKIDEMGSRIDELEQSINDLRSEMG 64 (86)
Q Consensus 11 ~s~~dLT~~Vq~LLq-------QmQ~kFqt---mS~~I~~RiDeMgsRIDdLEksI~dLm~qaG 64 (86)
.+..+|-.++-.||+ .|..-|.+ +++.|++|-.++..++.+|+.-|.-|+.+.+
T Consensus 77 ~s~~~LL~~~l~Ll~sW~~PL~~L~~~~~~~~~~p~~ilska~~I~ek~~~L~egi~~i~~~~~ 140 (199)
T 1f6f_A 77 TEDKILFKLVISLLHSWDEPLHHAVTELANSKGTSPALLTKAQEIKEKAKVLVDGVEVIQKRIH 140 (199)
T ss_dssp SCHHHHHHHHHHHHHTTHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCcchhcchHHHHHHHHHHHHHHHHHHHHHcc
Confidence 356777777777654 45555554 4578999999999999999999999999875
No 27
>3hrn_A Transient receptor potential (Trp) channel subfamily P member 2 (TRPP2); coiled coil, helix bundle, trimer, calcium, disease mutation, glycoprotein; 1.90A {Homo sapiens} PDB: 3hro_A
Probab=64.19 E-value=23 Score=22.03 Aligned_cols=38 Identities=18% Similarity=0.360 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 034704 13 TADMTAFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQS 55 (86)
Q Consensus 13 ~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEks 55 (86)
.+|...+...+|| .++.-..|.++||-+++++.-+|++
T Consensus 5 ~EEF~~L~rRVlq-----LE~sl~gI~SqIDaV~~KL~~~Er~ 42 (64)
T 3hrn_A 5 YEEFQVLVRRVDR-----MEHSIGSIVSKIDAVIVKLEIMERA 42 (64)
T ss_dssp HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555555443 4556667999999999999999985
No 28
>2ba2_A D12_ORF131, hypothetical UPF0134 protein MPN010; DUF16, hypothetical protein, coiled-coil, stutter, structural genomics, PSI; 1.80A {Mycoplasma pneumoniae} SCOP: h.1.30.1
Probab=62.69 E-value=3.9 Score=26.91 Aligned_cols=17 Identities=29% Similarity=0.606 Sum_probs=15.4
Q ss_pred HHHHHHHHHhhhHHHHH
Q 034704 37 SIIAKIDEMGSRIDELE 53 (86)
Q Consensus 37 ~I~~RiDeMgsRIDdLE 53 (86)
-|+..|..|+.|||.||
T Consensus 68 lil~tL~~~nkRLDkle 84 (85)
T 2ba2_A 68 LILEALQGINKRLDNLE 84 (85)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhccC
Confidence 57899999999999987
No 29
>3te3_A Polycystic kidney disease 2-like 1 protein; trimeric coiled-coil, oligomerization domain, C-terminal CYT regulatory domain, metal transport; 2.69A {Homo sapiens}
Probab=62.53 E-value=6.7 Score=22.28 Aligned_cols=19 Identities=21% Similarity=0.415 Sum_probs=15.5
Q ss_pred HhhhHHHHHHHHHHHHHhh
Q 034704 45 MGSRIDELEQSINDLRSEM 63 (86)
Q Consensus 45 MgsRIDdLEksI~dLm~qa 63 (86)
..+|++.||.+|..++.+.
T Consensus 12 L~rRVlqlE~~l~gI~S~i 30 (39)
T 3te3_A 12 LTRRVLQLETVLEGVVSQI 30 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3578889999999988875
No 30
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=61.42 E-value=28 Score=22.00 Aligned_cols=47 Identities=11% Similarity=0.234 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 034704 15 DMTAFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRS 61 (86)
Q Consensus 15 dLT~~Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm~ 61 (86)
|+.++|..-+..+-+-...-+...-.|+-.+..||..||+.|.=|=+
T Consensus 20 e~ie~is~~I~~~v~FLN~F~~sce~KLa~ln~kL~~lE~~L~iLEA 66 (73)
T 3pp5_A 20 EFIEDMSINIQKIVEFLNKFELSTRNKLSDLNEKLTILDRQVDYLEA 66 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444443333333445567888888899999998875543
No 31
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=61.05 E-value=22 Score=20.75 Aligned_cols=32 Identities=25% Similarity=0.463 Sum_probs=29.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034704 11 QNTADMTAFVQNLLQQMQSRFQTMSESIIAKI 42 (86)
Q Consensus 11 ~s~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~Ri 42 (86)
-+..||-.|=+.+|+.|..-+|.|=+.||.-|
T Consensus 4 ~~~~dle~~KqEIL~E~RkElqK~K~EIIeAi 35 (45)
T 1use_A 4 SDYSDLQRVKQELLEEVKKELQKVKEEIIEAF 35 (45)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999877
No 32
>2lme_A Adhesin YADA; trimeric autotransporter, membrane protein, cell adhesion; NMR {Yersinia enterocolitica subsp}
Probab=60.86 E-value=8.8 Score=24.79 Aligned_cols=23 Identities=17% Similarity=0.407 Sum_probs=16.5
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHH
Q 034704 39 IAKIDEMGSRIDELEQSINDLRS 61 (86)
Q Consensus 39 ~~RiDeMgsRIDdLEksI~dLm~ 61 (86)
-.||+++..|||+|++.+..-..
T Consensus 15 ~~~~~~l~~~i~~~~~~~~~g~A 37 (105)
T 2lme_A 15 AHKFRQLDNRLDKLDTRVDKGLA 37 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777888888888887765443
No 33
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=60.23 E-value=12 Score=28.84 Aligned_cols=48 Identities=13% Similarity=0.327 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHH---HHHHHHHhhhHHHHHHHHHHHHHhh
Q 034704 16 MTAFVQNLLQQMQSRFQ-TMSESI---IAKIDEMGSRIDELEQSINDLRSEM 63 (86)
Q Consensus 16 LT~~Vq~LLqQmQ~kFq-tmS~~I---~~RiDeMgsRIDdLEksI~dLm~qa 63 (86)
++.-|+....+|+..++ +.+.+| -++++.+..+|..||..|..++...
T Consensus 7 ~~~~le~~~~~ik~~~~~~~~~~I~~Lq~~le~L~~KI~~LE~~v~~q~~~~ 58 (323)
T 1lwu_B 7 AQKEIENRYKEVKIRIESTVAGSLRSMKSVLEHLRAKMQRMEEAIKTQKELC 58 (323)
T ss_dssp CHHHHHHHTHHHHHHHHTTTHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556666666766664 333333 3578899999999999999887754
No 34
>4a25_A DPS, ferritin DPS family protein; metal binding protein, detoxification process; 2.00A {Kineococcus radiotolerans}
Probab=58.51 E-value=13 Score=25.35 Aligned_cols=30 Identities=13% Similarity=0.299 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 034704 24 LQQMQSRFQTMSESIIAKIDEMGSRIDELE 53 (86)
Q Consensus 24 LqQmQ~kFqtmS~~I~~RiDeMgsRIDdLE 53 (86)
+-+++.+|+.+-+++...+|++..||-.|-
T Consensus 55 F~~lH~~fee~y~e~~~~~D~iAERI~~LG 84 (169)
T 4a25_A 55 WRDLHLQLDTLVEAARGFSDDVAERMRAVG 84 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 456778899999999999999999997663
No 35
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=58.40 E-value=13 Score=21.04 Aligned_cols=21 Identities=10% Similarity=0.321 Sum_probs=15.7
Q ss_pred HHHHhhhHHHHHHHHHHHHHh
Q 034704 42 IDEMGSRIDELEQSINDLRSE 62 (86)
Q Consensus 42 iDeMgsRIDdLEksI~dLm~q 62 (86)
|+.+-.||+.||+.|..|-..
T Consensus 46 ~~~L~~ri~~Le~~l~~l~~~ 66 (70)
T 1zme_C 46 LQQLQKDLNDKTEENNRLKAL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 667777888888888877653
No 36
>2cf7_A DPR; peroxide resistance, DPS-family, ferritin-like, ferroxidase, iron-binding; HET: EPE; 1.50A {Streptococcus suis} PDB: 2ux1_A* 2bw1_A* 1umn_A* 2v15_A* 2xjm_A* 2xjn_A* 2xjo_A* 2xkq_A*
Probab=58.16 E-value=27 Score=23.48 Aligned_cols=44 Identities=14% Similarity=0.259 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH----HHHHHHHhhccCC
Q 034704 24 LQQMQSRFQTMSESIIAKIDEMGSRIDELEQ----SINDLRSEMGIEG 67 (86)
Q Consensus 24 LqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEk----sI~dLm~qaG~e~ 67 (86)
+..++.+|..++.+...-+|++..||-.|.- ++.++..-+.+.+
T Consensus 48 f~~lh~~~ee~~~e~~~haD~lAERIl~LGg~P~~t~~~~~~~s~i~e 95 (165)
T 2cf7_A 48 FMIWHPKMDEYMEEIDGYLAEMSERLITLGGAPFSTLKEFSENSQLKE 95 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSHHHHHHHCSCCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCC
Confidence 5667888999999999999999999988763 3444544444443
No 37
>3iyn_Q Protein IX, PIX, hexon-associated protein; cryoem, 3D reconstruction, FULL-ATOM model interaction network, capsid protein, hexon protein; 3.60A {Human adenovirus 5}
Probab=54.35 E-value=17 Score=25.64 Aligned_cols=28 Identities=21% Similarity=0.540 Sum_probs=22.9
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhc
Q 034704 37 SIIAKIDEMGSRIDELEQSINDLRSEMG 64 (86)
Q Consensus 37 ~I~~RiDeMgsRIDdLEksI~dLm~qaG 64 (86)
.++.|++.++.|+++|-+.+.+|-.|..
T Consensus 102 ~~laqLe~ls~qL~~ls~~v~~L~~q~~ 129 (140)
T 3iyn_Q 102 ALLAQLDSLTRELNVVSQQLLDLRQQVS 129 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888899999999999987654
No 38
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=54.06 E-value=3.9 Score=25.70 Aligned_cols=19 Identities=16% Similarity=0.137 Sum_probs=12.6
Q ss_pred hhhHHHHHHHHHHHHHhhc
Q 034704 46 GSRIDELEQSINDLRSEMG 64 (86)
Q Consensus 46 gsRIDdLEksI~dLm~qaG 64 (86)
...||.|.+.+.-|..+..
T Consensus 41 q~~Id~L~~ql~~L~~rl~ 59 (78)
T 3efg_A 41 RLTGARNAELIRHLLEDLG 59 (78)
T ss_dssp HHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4567777777777776644
No 39
>1t72_A Phosphate transport system protein PHOU homolog; helix bundle, structural genomics, BSGC structure funded by NIH, protein structure initiative; 2.90A {Aquifex aeolicus} SCOP: a.7.12.1 PDB: 1t8b_A
Probab=53.67 E-value=47 Score=22.22 Aligned_cols=48 Identities=17% Similarity=0.209 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 034704 15 DMTAFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSE 62 (86)
Q Consensus 15 dLT~~Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm~q 62 (86)
.|...|...|...-.=|.+-......++-++-.+||.|++.|......
T Consensus 22 ~M~~~v~~~l~~a~~al~~~d~~~a~~v~~~d~~iD~l~~~i~~~~~~ 69 (227)
T 1t72_A 22 KMAKLVQEAIDKATEALNKQNVELAEEVIKGDDTIDLLEVDIERRCIR 69 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 455555555666555565555566777888888899999988776554
No 40
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=53.55 E-value=33 Score=20.41 Aligned_cols=16 Identities=13% Similarity=0.503 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 034704 20 VQNLLQQMQSRFQTMS 35 (86)
Q Consensus 20 Vq~LLqQmQ~kFqtmS 35 (86)
|+.-|..|..||..+.
T Consensus 83 i~~~l~~l~~rw~~L~ 98 (118)
T 3uul_A 83 IQEQMTLLNARWEALR 98 (118)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444444433
No 41
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=52.49 E-value=5 Score=23.52 Aligned_cols=21 Identities=14% Similarity=0.526 Sum_probs=14.5
Q ss_pred HHHHHHhhhHHHHHHHHHHHH
Q 034704 40 AKIDEMGSRIDELEQSINDLR 60 (86)
Q Consensus 40 ~RiDeMgsRIDdLEksI~dLm 60 (86)
..++.+-.||+.||..|..|-
T Consensus 58 ~~~~~L~~ri~~LE~~l~~l~ 78 (81)
T 1hwt_C 58 NELKKLRERVKSLEKTLSKVH 78 (81)
T ss_dssp HHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 567888899999998888764
No 42
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=51.98 E-value=28 Score=20.55 Aligned_cols=25 Identities=16% Similarity=0.227 Sum_probs=15.7
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHH
Q 034704 37 SIIAKIDEMGSRIDELEQSINDLRS 61 (86)
Q Consensus 37 ~I~~RiDeMgsRIDdLEksI~dLm~ 61 (86)
++-..++.++.+||.|...|..|..
T Consensus 8 ~Lss~V~~L~~kVdqLssdV~al~~ 32 (52)
T 1jcd_A 8 QASSDAQTANAKADQASNDANAARS 32 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566667777777776666654
No 43
>2fjc_A Antigen TPF1; mini ferritin, iron binding protein, metal transport; 2.50A {Treponema pallidum} SCOP: a.25.1.1
Probab=51.80 E-value=17 Score=24.03 Aligned_cols=30 Identities=17% Similarity=0.314 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 034704 24 LQQMQSRFQTMSESIIAKIDEMGSRIDELE 53 (86)
Q Consensus 24 LqQmQ~kFqtmS~~I~~RiDeMgsRIDdLE 53 (86)
+..++.+|..++.+...-+|++..||-.|.
T Consensus 44 f~~lh~~~ee~~~e~~~~aD~lAERI~~LG 73 (156)
T 2fjc_A 44 FKQVHELLEEYYVSVTEAFDTIAERLLQLG 73 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 456788999999999999999999998775
No 44
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=51.66 E-value=39 Score=28.55 Aligned_cols=16 Identities=13% Similarity=0.252 Sum_probs=11.1
Q ss_pred hhHHHHHHHHHHHHHh
Q 034704 47 SRIDELEQSINDLRSE 62 (86)
Q Consensus 47 sRIDdLEksI~dLm~q 62 (86)
++|..|+++|.+++.+
T Consensus 131 snIrvLQsnLedq~~k 146 (562)
T 3ghg_A 131 QHIQLLQKNVRAQLVD 146 (562)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666777777777654
No 45
>2chp_A MRGA, metalloregulation DNA-binding stress protein; DNA-binding protein, DPS, dodecameric, ferritin; 2.0A {Bacillus subtilis}
Probab=51.44 E-value=18 Score=23.89 Aligned_cols=44 Identities=9% Similarity=0.338 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH----HHHHHHHhhccCC
Q 034704 24 LQQMQSRFQTMSESIIAKIDEMGSRIDELEQ----SINDLRSEMGIEG 67 (86)
Q Consensus 24 LqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEk----sI~dLm~qaG~e~ 67 (86)
+..++.+|..++.+...-+|++..||-.|.- ++.++..-+.+.+
T Consensus 43 f~~lh~~~ee~~~e~~~~~D~lAERI~~LGg~P~~~~~~~~~~s~i~e 90 (153)
T 2chp_A 43 FFTLHEKFEELYDHAAETVDTIAERLLAIGGQPVATVKEYTEHASITD 90 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSHHHHHHHCSSCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHhHCCCCC
Confidence 4567889999999999999999999988753 3445544444443
No 46
>3aj1_A Cellulose synthase operon protein D; alpha and beta fold, octamer, tetramer of dimers, molecule R cellulose biosynthesis; 2.50A {Acetobacter xylinus} PDB: 3aj2_A 3a8e_A
Probab=51.26 E-value=49 Score=23.79 Aligned_cols=48 Identities=27% Similarity=0.427 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------------HHHHHHHHHHHHHhhc
Q 034704 15 DMTAFVQNLLQQMQSRFQTMSESIIAKIDEMGSR------------IDELEQSINDLRSEMG 64 (86)
Q Consensus 15 dLT~~Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsR------------IDdLEksI~dLm~qaG 64 (86)
+..-||+.|...+.+.... ++.-.-|-.||.| |++||++||-+....+
T Consensus 20 ~~~~Fl~aLa~Ei~~~ag~--ee~~~fL~r~G~rlA~r~PLp~~~Tl~dLE~~iN~vla~~~ 79 (167)
T 3aj1_A 20 DFTLFLQTLSWEIDDQVGI--EVRNELLREVGRGMGTRIMPPPCQTVDKLQIELNALLALIG 79 (167)
T ss_dssp CCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHTTTBCCCCCSSHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhhCC
Confidence 4567888888877665543 3333445667766 6999999999998775
No 47
>2gr7_A Adhesin; trimeric autotransporter, adhesion, membrane protein, protei secretion, microbial pathogenesis; HET: C8E; 2.30A {Haemophilus influenzae} SCOP: d.24.1.4
Probab=51.18 E-value=44 Score=22.54 Aligned_cols=44 Identities=5% Similarity=0.241 Sum_probs=23.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH----HHHHHHhhccCC
Q 034704 12 NTADMTAFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQS----INDLRSEMGIEG 67 (86)
Q Consensus 12 s~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEks----I~dLm~qaG~e~ 67 (86)
+...|+++.+.+.+ +-.||+.+.+|||+++|. |+--+.-+++..
T Consensus 23 Ng~QL~~v~~~v~~------------~~~~in~L~~~I~~~~k~a~aGiA~A~A~A~LPq 70 (129)
T 2gr7_A 23 NGSQLYAVAKGVTN------------LAGQVNNLEGKVNKVGKRADAGTASALAASQLPQ 70 (129)
T ss_dssp ------CHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred cHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 34556666655532 345677788888888877 455555556543
No 48
>2bk6_A Non-heme iron-containing ferritin; DPS (DNA binding protein from starved cells), ferroxidase center, mutagenesis study; 2.19A {Listeria innocua} SCOP: a.25.1.1 PDB: 1qgh_A 2bjy_A 2iy4_A 2bkc_A
Probab=50.62 E-value=19 Score=23.80 Aligned_cols=30 Identities=10% Similarity=0.298 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 034704 24 LQQMQSRFQTMSESIIAKIDEMGSRIDELE 53 (86)
Q Consensus 24 LqQmQ~kFqtmS~~I~~RiDeMgsRIDdLE 53 (86)
+..++.+|..++.+...-+|++..||-.|.
T Consensus 39 f~~lh~~~ee~~~e~~~~~D~lAERI~~Lg 68 (156)
T 2bk6_A 39 FFTLHEKMDDLYSEFGEQMDEVAERLLAIG 68 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 456788999999999999999999998875
No 49
>3iq1_A DPS family protein; csgid, SAD, niaid, metal transport, STRU genomics, center for structural genomics of infectious DISE; 1.67A {Vibrio cholerae o1 biovar el tor}
Probab=50.49 E-value=19 Score=23.94 Aligned_cols=44 Identities=23% Similarity=0.385 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH----HHHHHHHhhccCC
Q 034704 24 LQQMQSRFQTMSESIIAKIDEMGSRIDELEQ----SINDLRSEMGIEG 67 (86)
Q Consensus 24 LqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEk----sI~dLm~qaG~e~ 67 (86)
+..++.+|....+++...+|++..||-.|.- +..++..-+.+.+
T Consensus 49 F~~lH~~~ee~~~~~~~~~D~lAERI~~LGg~P~~t~~~~~~~s~i~e 96 (159)
T 3iq1_A 49 FFELHAKFEEIYTDLQLKIDELAERILTLSARPMHSFSGYLKAAQIKE 96 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSHHHHHHHCSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHCCCCc
Confidence 5567788999999999999999999988864 3445555444444
No 50
>3rmi_A Chorismate mutase protein; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid; 2.40A {Bartonella henselae}
Probab=50.47 E-value=32 Score=22.36 Aligned_cols=30 Identities=20% Similarity=0.422 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 034704 33 TMSESIIAKIDEMGSRIDELEQSINDLRSE 62 (86)
Q Consensus 33 tmS~~I~~RiDeMgsRIDdLEksI~dLm~q 62 (86)
.++...-..|++.=.+||.|-+.|-+|+.+
T Consensus 5 ~~~p~~~~~L~~lR~~ID~ID~~il~LL~~ 34 (114)
T 3rmi_A 5 MMQEKILSELAYLRQSIDNFDITLIHILAE 34 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666667888888888888888887764
No 51
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=50.24 E-value=23 Score=20.65 Aligned_cols=32 Identities=22% Similarity=0.563 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 034704 20 VQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQS 55 (86)
Q Consensus 20 Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEks 55 (86)
|+..|.++-.-+..+ ...+.++-.+|..|+..
T Consensus 25 VD~FLd~v~~~~~~l----~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 25 VNEFLAQVRKDYEIV----LRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhc
Confidence 444455554444443 33345555555555543
No 52
>1kmi_Z CHEZ, chemotaxis protein CHEZ; four-helix bundle, signaling protein; HET: BCN; 2.90A {Escherichia coli} SCOP: h.4.11.1
Probab=49.87 E-value=7.5 Score=28.18 Aligned_cols=34 Identities=24% Similarity=0.339 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCC
Q 034704 31 FQTMSESIIAKIDEMGSRIDELEQSINDLRSEMGIEG 67 (86)
Q Consensus 31 FqtmS~~I~~RiDeMgsRIDdLEksI~dLm~qaG~e~ 67 (86)
||.+..|+|.|+=.+ |.++|+.|..|+...|.+.
T Consensus 141 FQDLTGQ~I~KVi~l---v~~vE~~L~~ll~~~~~~~ 174 (214)
T 1kmi_Z 141 FQDLTGQVIKRMMDV---IQEIERQLLMVLLENIPEQ 174 (214)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHTTTTTTC------
T ss_pred cchHHHHHHHHHHHH---HHHHHHHHHHHHHHhCCcc
Confidence 999999999998666 6689999999998887655
No 53
>3ak8_A DNA protection during starvation protein; DPS-like protein, dodecamer, iron-binding protein, metal BIN protein, oxidoreductase; HET: DNA; 1.25A {Salmonella enterica subsp} PDB: 3ak9_A* 1f33_A* 1f30_A* 1dps_A 1jts_A* 1jre_A* 1l8h_A* 1l8i_A* 4dyu_A*
Probab=49.41 E-value=19 Score=24.16 Aligned_cols=30 Identities=13% Similarity=0.293 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 034704 24 LQQMQSRFQTMSESIIAKIDEMGSRIDELE 53 (86)
Q Consensus 24 LqQmQ~kFqtmS~~I~~RiDeMgsRIDdLE 53 (86)
+..++.+|..++.+...-+|++..||-.|+
T Consensus 59 f~~lh~~~ee~~~e~~~~aD~lAERI~~LG 88 (167)
T 3ak8_A 59 FIAVHEMLDGFRTALTDHLDTMAERAVQLG 88 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 345678899999999999999999998775
No 54
>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=49.20 E-value=4.1 Score=30.07 Aligned_cols=20 Identities=25% Similarity=0.431 Sum_probs=0.0
Q ss_pred HHHHHHhhhHHHHHHHHHHH
Q 034704 40 AKIDEMGSRIDELEQSINDL 59 (86)
Q Consensus 40 ~RiDeMgsRIDdLEksI~dL 59 (86)
.|||+++.||+.|+..|..|
T Consensus 5 ~~~~~~~~~~~~l~~~~~~l 24 (215)
T 2gtl_O 5 EIIDKLIERTNKITTSISHV 24 (215)
T ss_dssp TTTSTTTHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhHHHH
No 55
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=48.97 E-value=39 Score=19.93 Aligned_cols=14 Identities=7% Similarity=0.223 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q 034704 31 FQTMSESIIAKIDE 44 (86)
Q Consensus 31 FqtmS~~I~~RiDe 44 (86)
|...+.+|-..+..
T Consensus 20 ~~~~~~~i~~~l~~ 33 (98)
T 3gwk_C 20 YTAGSQQVTEVLNL 33 (98)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 56
>2yjk_A AFP, DPS; metal-binding protein, iron uptake, ferritin fold; 2.00A {Microbacterium arborescens} PDB: 2yjj_A
Probab=48.68 E-value=21 Score=23.84 Aligned_cols=30 Identities=13% Similarity=0.159 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 034704 24 LQQMQSRFQTMSESIIAKIDEMGSRIDELE 53 (86)
Q Consensus 24 LqQmQ~kFqtmS~~I~~RiDeMgsRIDdLE 53 (86)
+..++.+|..++.+...-+|++..||-.|.
T Consensus 51 f~~lh~~~ee~~~e~~~~aD~lAERI~~LG 80 (161)
T 2yjk_A 51 FIAIHELLDSVVAHAQDYADTAAERIVALG 80 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 456788899999999999999999998775
No 57
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=48.66 E-value=22 Score=22.44 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=19.6
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHh
Q 034704 38 IIAKIDEMGSRIDELEQSINDLRSE 62 (86)
Q Consensus 38 I~~RiDeMgsRIDdLEksI~dLm~q 62 (86)
+..||..|-.+|+.|++.+..|...
T Consensus 2 ~~~~l~~l~~~~~~l~~~l~~l~~~ 26 (149)
T 1rtm_1 2 IEVKLANMEAEINTLKSKLELTNKL 26 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4567888888888888888877763
No 58
>2z90_A Starvation-inducible DNA-binding protein or FINE tangled PILI major subunit; quarternary assembly, ferroxidation; 2.40A {Mycobacterium smegmatis str}
Probab=48.61 E-value=21 Score=23.90 Aligned_cols=30 Identities=10% Similarity=0.308 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 034704 24 LQQMQSRFQTMSESIIAKIDEMGSRIDELE 53 (86)
Q Consensus 24 LqQmQ~kFqtmS~~I~~RiDeMgsRIDdLE 53 (86)
+..++.+|..++.+...-+|++..||-.|.
T Consensus 49 f~~lh~~~ee~~~e~~~~aD~lAERIl~LG 78 (161)
T 2z90_A 49 FRDLHLQLDELVDFAREGSDTIAERMRALD 78 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 456678899999999999999999997775
No 59
>2z9e_A Cellulose synthase operon protein D; alpha and beta fold, octamer, tetramer of dimers, molecule ring, cellulose biosynthesis; 2.50A {Acetobacter xylinus} PDB: 3aj1_A 3aj2_A 3a8e_A 2z9f_A
Probab=48.04 E-value=74 Score=22.84 Aligned_cols=47 Identities=26% Similarity=0.403 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------------HHHHHHHHHHHHHhhc
Q 034704 16 MTAFVQNLLQQMQSRFQTMSESIIAKIDEMGSR------------IDELEQSINDLRSEMG 64 (86)
Q Consensus 16 LT~~Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsR------------IDdLEksI~dLm~qaG 64 (86)
-+.|+.-|+..|.+.... ++.-.-|-.||.| +++||++||.+....+
T Consensus 21 W~~FL~aLa~E~~~~ag~--~e~~~fLrrvG~rlA~r~PLp~~~TlaeLE~~iNavla~~~ 79 (167)
T 2z9e_A 21 FTLFLQTLSWEIDDQVGI--EVRNELLREVGRGMGTRIMPPPCQTVDKLQIELNALLALIG 79 (167)
T ss_dssp CHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHTTTBCCCCCSSHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHhCC
Confidence 356777777777665543 3333445566666 6999999999988765
No 60
>2l3l_A Tubulin-specific chaperone C; tubulin binding cofactor; NMR {Homo sapiens}
Probab=47.30 E-value=54 Score=21.48 Aligned_cols=20 Identities=35% Similarity=0.702 Sum_probs=17.2
Q ss_pred HHHHHHHhhhHHHHHHHHHH
Q 034704 39 IAKIDEMGSRIDELEQSIND 58 (86)
Q Consensus 39 ~~RiDeMgsRIDdLEksI~d 58 (86)
...+|++..+|..|++-++|
T Consensus 57 ~~~ld~i~~~I~~Lqk~v~d 76 (111)
T 2l3l_A 57 VERLEEAASRLQGLQKLIND 76 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 45689999999999998887
No 61
>2c2j_A DNA-binding stress response protein; DNA-binding protein, DPS; 2.05A {Deinococcus radiodurans} PDB: 2c6r_A
Probab=47.23 E-value=20 Score=25.67 Aligned_cols=30 Identities=17% Similarity=0.141 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 034704 24 LQQMQSRFQTMSESIIAKIDEMGSRIDELE 53 (86)
Q Consensus 24 LqQmQ~kFqtmS~~I~~RiDeMgsRIDdLE 53 (86)
+..++.+|..+..+...-+|++..||-.|+
T Consensus 78 F~~LHe~fee~~~e~~~haD~lAERIl~LG 107 (211)
T 2c2j_A 78 WYTLHELLQDHYEGISKFADDVAERQLSVG 107 (211)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 456788899999999999999999998775
No 62
>4eve_A Neutrophil-activating protein; dodecamer, four-helix bundle, metal transport; 2.10A {Helicobacter pylori} PDB: 4evd_A 3t9j_A 3ta8_A 4evb_A 4evc_A 1ji4_A
Probab=47.18 E-value=26 Score=23.66 Aligned_cols=44 Identities=11% Similarity=0.244 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH----HHHHHHHhhccCC
Q 034704 24 LQQMQSRFQTMSESIIAKIDEMGSRIDELEQ----SINDLRSEMGIEG 67 (86)
Q Consensus 24 LqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEk----sI~dLm~qaG~e~ 67 (86)
+..+..+|....+++...+|++..||-.|.- +..++..-+.+.+
T Consensus 53 F~~lH~~~ee~~~e~~~~~D~lAERI~~LGg~P~~t~~~~~~~s~i~e 100 (164)
T 4eve_A 53 FFNVHKATEEIYEEFADMFDDLAERIVQLGHHPLVTLSEAIKLTRVKE 100 (164)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHCCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHcCCCc
Confidence 5667788999999999999999999988864 3445555555444
No 63
>3kwo_A Putative bacterioferritin; alpha-helix, bacterial ferritin fold, structural genomics, center for structural genomics of infectious diseases; 1.99A {Campylobacter jejuni} SCOP: a.25.1.0
Probab=47.15 E-value=27 Score=22.98 Aligned_cols=44 Identities=11% Similarity=0.097 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH----HHHHHHHhhccCC
Q 034704 24 LQQMQSRFQTMSESIIAKIDEMGSRIDELEQ----SINDLRSEMGIEG 67 (86)
Q Consensus 24 LqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEk----sI~dLm~qaG~e~ 67 (86)
+..++.+|....+++..-+|++..||-.|.- +..++..-+.+.+
T Consensus 36 F~~lH~~~ee~~~~~~~~~D~iAERI~~LGg~P~~t~~~~~~~s~i~e 83 (152)
T 3kwo_A 36 FFSIHEYTEKAYEEMAELFDSCAERVLQLGEKAITCQKVLMENAKSPK 83 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCHHHHHHHCCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHhHCCCCC
Confidence 5677888999999999999999999988864 3444544444443
No 64
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=47.01 E-value=53 Score=20.87 Aligned_cols=22 Identities=18% Similarity=0.373 Sum_probs=15.1
Q ss_pred HHHHhhhHHHHHHHHHHHHHhh
Q 034704 42 IDEMGSRIDELEQSINDLRSEM 63 (86)
Q Consensus 42 iDeMgsRIDdLEksI~dLm~qa 63 (86)
+-+=|.|||+|+..-.+|..++
T Consensus 53 vLeRGEkLd~L~dkse~L~~~S 74 (96)
T 1sfc_A 53 VLERDQKLSELDDRADALQAGA 74 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHHH
Confidence 3344778888887777777665
No 65
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=46.76 E-value=59 Score=21.31 Aligned_cols=24 Identities=29% Similarity=0.482 Sum_probs=18.2
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHh
Q 034704 39 IAKIDEMGSRIDELEQSINDLRSE 62 (86)
Q Consensus 39 ~~RiDeMgsRIDdLEksI~dLm~q 62 (86)
=.+|.++..|+++.|...++|...
T Consensus 82 e~~l~el~~rleeeee~~~~L~~~ 105 (129)
T 2fxo_A 82 EAKVKEMNKRLEDEEEMNAELTAK 105 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888888888877777777654
No 66
>2wlu_A DPS-like peroxide resistance protein; DNA-binding, oxidoreductase; 1.94A {Streptococcus pyogenes} PDB: 2wla_A
Probab=46.71 E-value=22 Score=24.16 Aligned_cols=30 Identities=17% Similarity=0.400 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 034704 24 LQQMQSRFQTMSESIIAKIDEMGSRIDELE 53 (86)
Q Consensus 24 LqQmQ~kFqtmS~~I~~RiDeMgsRIDdLE 53 (86)
+..++.+|..++.+...-+|++..||-.|+
T Consensus 58 f~~lh~~~ee~~~e~~~~aD~lAERIl~LG 87 (175)
T 2wlu_A 58 FLYLHPKMDELLDSLNANLDEVSERLITIG 87 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 456678899999999999999999998775
No 67
>3f42_A Protein HP0035; helicobacter pylori unknown-function, structural genomics, P protein structure initiative; HET: MSE; 1.78A {Helicobacter pylori}
Probab=46.18 E-value=20 Score=23.27 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 034704 20 VQNLLQQMQSRFQTMSESIIA 40 (86)
Q Consensus 20 Vq~LLqQmQ~kFqtmS~~I~~ 40 (86)
+++|+|+||.+++.+-.++-.
T Consensus 8 m~~lmq~mQ~~m~~~QeeL~~ 28 (99)
T 3f42_A 8 LGGLLDGMKKEFSQLEEKNKD 28 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 456679999999988887753
No 68
>2yw6_A DNA protection during starvation protein; DNA-binding protein, quarternary assembly, ferroxidation, oxidoreductase; HET: DNA; 2.53A {Mycobacterium smegmatis} SCOP: a.25.1.1 PDB: 1vei_A 1vel_A 1veq_A 1uvh_A* 2yw7_A
Probab=45.56 E-value=24 Score=24.28 Aligned_cols=30 Identities=20% Similarity=0.250 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 034704 24 LQQMQSRFQTMSESIIAKIDEMGSRIDELE 53 (86)
Q Consensus 24 LqQmQ~kFqtmS~~I~~RiDeMgsRIDdLE 53 (86)
+..++.+|..+..+...-+|++..||-.|.
T Consensus 47 F~~lh~~~ee~~~e~~~haD~lAERIl~LG 76 (183)
T 2yw6_A 47 FIGVHEMIDPQVELVRGYADEVAERIATLG 76 (183)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 456788899999999999999999998775
No 69
>2xz3_A Maltose ABC transporter periplasmic protein, ENVE glycoprotein; viral protein, viral membrane fusion, hairpin, chimera; HET: MAL; 1.95A {Escherichia coli} PDB: 1mg1_A*
Probab=45.48 E-value=53 Score=24.65 Aligned_cols=31 Identities=6% Similarity=0.193 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 034704 29 SRFQTMSESIIAKIDEMGSRIDELEQSINDL 59 (86)
Q Consensus 29 ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dL 59 (86)
.+++.+-..+-.-|+++..-|..|+++|.-|
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 405 (463)
T 2xz3_A 375 QRLTSLIHVLEQDQQRLITAINQTHYNLLNV 405 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455665666666667777777777776553
No 70
>3opc_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, chaperone; HET: MSE; 2.09A {Bordetella pertussis}
Probab=45.06 E-value=62 Score=21.09 Aligned_cols=51 Identities=14% Similarity=0.354 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHhhhHHHHHHHHHHHHHhhccCC
Q 034704 17 TAFVQNLLQQMQSRFQTMSE--------SIIAKIDEMGSRIDELEQSINDLRSEMGIEG 67 (86)
Q Consensus 17 T~~Vq~LLqQmQ~kFqtmS~--------~I~~RiDeMgsRIDdLEksI~dLm~qaG~e~ 67 (86)
...++.|+.-|...++-+.. .|..+....-.+|..+|+....++...|+..
T Consensus 17 ~~~l~~L~~lL~~E~~~L~~~~d~~~L~~i~~~K~~ll~~L~~~~~~R~~~l~~lgl~~ 75 (154)
T 3opc_A 17 NALVVEFLHALEAETEALMDRRAHESLQAAVQRKETLADDLAQLGAERDALLSGAGLAS 75 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 44566677777777776655 5666667778889999999999999988753
No 71
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=44.93 E-value=36 Score=19.75 Aligned_cols=15 Identities=0% Similarity=0.140 Sum_probs=6.2
Q ss_pred HHHHHhhhHHHHHHH
Q 034704 41 KIDEMGSRIDELEQS 55 (86)
Q Consensus 41 RiDeMgsRIDdLEks 55 (86)
.+..+...|+++.+.
T Consensus 64 ~~~~~~~~L~~i~~~ 78 (93)
T 4ioe_A 64 AMQQYIPILEGISTD 78 (93)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444433
No 72
>3uno_A Probable bacterioferritin BFRB; ferroxidase activity, iron storage, oxidoreductase; 2.50A {Mycobacterium tuberculosis} PDB: 3oj5_A 3qd8_A
Probab=44.52 E-value=76 Score=21.94 Aligned_cols=36 Identities=19% Similarity=0.289 Sum_probs=17.8
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhccCCCCCCCCCCCC
Q 034704 38 IIAKIDEMGSRIDELEQSINDLRSEMGIEGSASPSLPSKS 77 (86)
Q Consensus 38 I~~RiDeMgsRIDdLEksI~dLm~qaG~e~~~~~~~~~~~ 77 (86)
++++|.-||.-.-.|+.-+.+-++ .....+.||+..
T Consensus 142 ~l~~l~~~g~~~~~l~~yL~~~~~----~~~~~~~~~~~~ 177 (189)
T 3uno_A 142 LVRVADRAGANLFELENFVAREVD----VAPAASGAPHAA 177 (189)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHSC----CCCCCCCCCCCT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHhc----CCCCCCCCCccc
Confidence 445555555544455555544444 344445555443
No 73
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=44.34 E-value=1.2e+02 Score=24.09 Aligned_cols=54 Identities=15% Similarity=0.215 Sum_probs=31.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 034704 9 PKQNTADMTAFVQNLLQQMQSRFQTMSE-------SIIAKIDEMGSRIDELEQSINDLRSEM 63 (86)
Q Consensus 9 ~~~s~~dLT~~Vq~LLqQmQ~kFqtmS~-------~I~~RiDeMgsRIDdLEksI~dLm~qa 63 (86)
.+.+....|.....+++++.. ++++-. .+-.+++...++|+.|+..|..|+...
T Consensus 75 ~~d~~e~~tq~skkml~~~~~-~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~~~ 135 (409)
T 1m1j_C 75 LPQSIEQLTQKSKKIIEEIIR-YENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLESHC 135 (409)
T ss_dssp CSSCHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCchhhHHHHHHHHHHHHHH-HHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 344556667777777776443 333222 223345566677777777777776543
No 74
>2hn1_A CORA, magnesium and cobalt transporter; integral membrane protein fragment, metal transporter protei divalent cations, metal transport; 2.90A {Archaeoglobus fulgidus}
Probab=44.26 E-value=28 Score=24.29 Aligned_cols=18 Identities=17% Similarity=0.390 Sum_probs=10.6
Q ss_pred HHHHHHHhhhHHHHHHHH
Q 034704 39 IAKIDEMGSRIDELEQSI 56 (86)
Q Consensus 39 ~~RiDeMgsRIDdLEksI 56 (86)
+.-++.++.+||+||..|
T Consensus 186 ~~~l~~i~~~id~lE~~l 203 (266)
T 2hn1_A 186 FEALLKISDEIEVLEDEV 203 (266)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334566666666666654
No 75
>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli}
Probab=44.15 E-value=10 Score=28.04 Aligned_cols=24 Identities=29% Similarity=0.652 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHH
Q 034704 36 ESIIAKIDEMGSRIDELEQSINDL 59 (86)
Q Consensus 36 ~~I~~RiDeMgsRIDdLEksI~dL 59 (86)
...+.|+.+|-+|+.+|||.+..|
T Consensus 317 ~~~~~~l~~~~~~~~~l~~~~~~l 340 (341)
T 3eh0_A 317 AALVMNIDDMSKRLKSLERKVNQQ 340 (341)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhHHHHHHHHHHHHHHHhhc
Confidence 455788999999999999987643
No 76
>1o9r_A Agrobacterium tumefaciens DPS; iron-binding protein, DNA protection from oxidative damage, DNA-binding, iron- binding protein; 1.45A {Agrobacterium tumefaciens} SCOP: a.25.1.1 PDB: 3ge4_A*
Probab=44.02 E-value=32 Score=22.80 Aligned_cols=30 Identities=13% Similarity=0.224 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 034704 24 LQQMQSRFQTMSESIIAKIDEMGSRIDELE 53 (86)
Q Consensus 24 LqQmQ~kFqtmS~~I~~RiDeMgsRIDdLE 53 (86)
+..++.+|.....+...-+|++..||-.|.
T Consensus 48 f~~lh~~~ee~~~e~~~~aD~lAERI~~LG 77 (162)
T 1o9r_A 48 FIAVHELLDTFRTQLDNHGDTIAERVVQLG 77 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 455788899999999999999999998775
No 77
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=43.57 E-value=23 Score=20.75 Aligned_cols=21 Identities=29% Similarity=0.363 Sum_probs=16.5
Q ss_pred HHHHHhhhHHHHHHHHHHHHH
Q 034704 41 KIDEMGSRIDELEQSINDLRS 61 (86)
Q Consensus 41 RiDeMgsRIDdLEksI~dLm~ 61 (86)
.++.+-.||..||..|..|..
T Consensus 46 ~~~~L~~r~~~le~~l~~l~~ 66 (89)
T 3coq_A 46 HLTEVESRLERLEQLFLLIFP 66 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHcC
Confidence 466777889999988888754
No 78
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=43.50 E-value=24 Score=21.09 Aligned_cols=19 Identities=5% Similarity=0.142 Sum_probs=14.3
Q ss_pred HHHHHhhhHHHHHHHHHHH
Q 034704 41 KIDEMGSRIDELEQSINDL 59 (86)
Q Consensus 41 RiDeMgsRIDdLEksI~dL 59 (86)
.+..+-.||..||..|..+
T Consensus 49 ~~~~Le~rl~~le~~l~~~ 67 (96)
T 1pyi_A 49 YVFFLEDRLAVMMRVLKEY 67 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4566778888999877765
No 79
>1ji5_A DLP-1; dodecamer, four-helix bundle, metal transport; 2.50A {Bacillus anthracis} SCOP: a.25.1.1
Probab=42.85 E-value=37 Score=21.25 Aligned_cols=31 Identities=19% Similarity=0.385 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 034704 24 LQQMQSRFQTMSESIIAKIDEMGSRIDELEQ 54 (86)
Q Consensus 24 LqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEk 54 (86)
+..+..+|...+.+...-+|.+..||-.|.-
T Consensus 32 f~~l~~~~~~~~~ee~~had~laeri~~lGg 62 (142)
T 1ji5_A 32 FFTLHEKFEELYTESATHIDEIAERILAIGG 62 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 4567888999999999999999999988754
No 80
>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa}
Probab=42.68 E-value=14 Score=28.03 Aligned_cols=23 Identities=26% Similarity=0.601 Sum_probs=17.4
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHH
Q 034704 37 SIIAKIDEMGSRIDELEQSINDL 59 (86)
Q Consensus 37 ~I~~RiDeMgsRIDdLEksI~dL 59 (86)
..+.|+.+|-+|+..|||.+..|
T Consensus 340 ~~~~~l~~~~~~~~~l~k~~~~~ 362 (372)
T 3pmo_A 340 ARIRQLDDMARRLQQLEKRLAAV 362 (372)
T ss_dssp HHHHTHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45688899999999999988765
No 81
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=42.30 E-value=45 Score=20.34 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=15.6
Q ss_pred HHHHhhhHHHHHHHHHHHHHhh
Q 034704 42 IDEMGSRIDELEQSINDLRSEM 63 (86)
Q Consensus 42 iDeMgsRIDdLEksI~dLm~qa 63 (86)
+-+=|.|||+|+..-.+|..++
T Consensus 38 vLeRGekLd~L~~kt~~L~~~s 59 (80)
T 1l4a_A 38 VLERDSKISELDDRADALQAGA 59 (80)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTS
T ss_pred HHHhhhHHHHHHHHHHHHHHHH
Confidence 3444888888888777776654
No 82
>2c41_A DPS family DNA-binding stress response protein; iron-binding/oxidation protein, DPS (DNA-binding proteins from starved cells); HET: PG4 PGE; 1.81A {Thermosynechococcus elongatus}
Probab=42.20 E-value=36 Score=22.10 Aligned_cols=30 Identities=23% Similarity=0.412 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 034704 24 LQQMQSRFQTMSESIIAKIDEMGSRIDELE 53 (86)
Q Consensus 24 LqQmQ~kFqtmS~~I~~RiDeMgsRIDdLE 53 (86)
+..+..+|...+.+...-+|++..||-.|.
T Consensus 41 f~~lh~~~~~~~~ee~~had~iaErI~~lG 70 (158)
T 2c41_A 41 FRDLHLLFEEQGSEVFAMIDELAERSLMLD 70 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 456788899999999999999999997763
No 83
>2xz3_A Maltose ABC transporter periplasmic protein, ENVE glycoprotein; viral protein, viral membrane fusion, hairpin, chimera; HET: MAL; 1.95A {Escherichia coli} PDB: 1mg1_A*
Probab=41.56 E-value=73 Score=23.86 Aligned_cols=43 Identities=16% Similarity=0.199 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHhh
Q 034704 21 QNLLQQMQSRFQTMSESIIA-KIDEMGSRIDELEQSINDLRSEM 63 (86)
Q Consensus 21 q~LLqQmQ~kFqtmS~~I~~-RiDeMgsRIDdLEksI~dLm~qa 63 (86)
+..|++++.+.+.+-.+-.. -+++...-|+.+++||..|=.+.
T Consensus 359 eeal~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 402 (463)
T 2xz3_A 359 DAALAAAQTNAAALSHQRLTSLIHVLEQDQQRLITAINQTHYNL 402 (463)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466666666544433332 35778888888999998886653
No 84
>1n1q_A DPS protein; four-helix bundle, unknown function; 2.20A {Brevibacillus brevis} SCOP: a.25.1.1
Probab=41.21 E-value=39 Score=21.50 Aligned_cols=30 Identities=13% Similarity=0.362 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 034704 24 LQQMQSRFQTMSESIIAKIDEMGSRIDELE 53 (86)
Q Consensus 24 LqQmQ~kFqtmS~~I~~RiDeMgsRIDdLE 53 (86)
+..+...|...+.+...-+|.+..||-.|.
T Consensus 39 f~~lh~~~~~~~~ee~~had~laeri~~lG 68 (149)
T 1n1q_A 39 FFTLHEKFEELYTEASGHIDTLAERVLSIG 68 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 445678889999999999999999997774
No 85
>1jig_A DLP-2; dodecamer, four-helix bundle, metal transport; 1.46A {Bacillus anthracis} SCOP: a.25.1.1
Probab=40.96 E-value=40 Score=21.30 Aligned_cols=30 Identities=27% Similarity=0.412 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 034704 24 LQQMQSRFQTMSESIIAKIDEMGSRIDELE 53 (86)
Q Consensus 24 LqQmQ~kFqtmS~~I~~RiDeMgsRIDdLE 53 (86)
+..+...|...+.+...-+|.+..||-.|.
T Consensus 36 f~~lh~~~~~~~~ee~~had~laeri~~lG 65 (146)
T 1jig_A 36 FFTLHEKFEEFYNEAGTYIDELAERILALE 65 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 445678888999999999999999987764
No 86
>1sz7_A BET3 homolog, trafficking protein particle complex subunit 3; alpha-beta plait, trapp complex, palmitoylated, transport PR; HET: PLM; 1.55A {Homo sapiens} PDB: 2cfh_A* 2pwn_A* 3kxc_A* 1wc8_A* 2j3w_D* 2j3r_A* 2j3t_A* 1wc9_A* 2c0j_A*
Probab=40.81 E-value=36 Score=24.61 Aligned_cols=34 Identities=24% Similarity=0.408 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 034704 16 MTAFVQNLLQQMQSRFQTMSESIIAKIDEMGSRID 50 (86)
Q Consensus 16 LT~~Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRID 50 (86)
++-.--.+.++++.++.. .+.+..||+.||-+|=
T Consensus 28 f~lly~eiV~~~~~~~~~-~~ev~~rLe~mGy~IG 61 (200)
T 1sz7_A 28 FTLTYGALVTQLCKDYEN-DEDVNKQLDKMGFNIG 61 (200)
T ss_dssp HHHHHHHHHHHHHHHHCS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCC-HHHHHHHHHHhCHHHh
Confidence 444456777888888887 5668999999998874
No 87
>2pyb_A NAPA, neutrophil activating protein; ferritin, DPS, four-helix bundle, metal transport; 2.60A {Borrelia burgdorferi}
Probab=39.63 E-value=17 Score=23.85 Aligned_cols=30 Identities=23% Similarity=0.207 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 034704 24 LQQMQSRFQTMSESIIAKIDEMGSRIDELE 53 (86)
Q Consensus 24 LqQmQ~kFqtmS~~I~~RiDeMgsRIDdLE 53 (86)
+..++.+|..++.+...-+|++..||-.|.
T Consensus 36 f~~lh~~~ee~~~e~~~~aD~lAERI~~Lg 65 (151)
T 2pyb_A 36 FFVIHKKTQKLYEYIEKIIDIVAERSRMLG 65 (151)
T ss_dssp THHHHHHHHHHHTTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 456778899999999999999999987664
No 88
>1xwm_A PHOU, phosphate uptake regulator; negative phosphate uptake regulator, structural genomics, protein structure initiative, PSI; 2.50A {Geobacillus stearothermophilus} SCOP: a.7.12.1
Probab=39.27 E-value=84 Score=20.93 Aligned_cols=49 Identities=27% Similarity=0.333 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 034704 14 ADMTAFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSE 62 (86)
Q Consensus 14 ~dLT~~Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm~q 62 (86)
..|...|...|...-.-|.+-......++-+.-..||.|+..|......
T Consensus 17 ~~M~~~v~~ml~~a~~al~~~d~~~a~~v~~~d~~iD~l~~~i~~~~~~ 65 (217)
T 1xwm_A 17 IEMGRLTEVALQQAIEAFQTQNANLAMAVIDGDGSIDALEEEVNDFALW 65 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666655667778888888999999999876554
No 89
>2i0m_A Phosphate transport system protein PHOU; zinc-binding protein, structural genomics, PSI-2, PROT structure initiative; 2.40A {Streptococcus pneumoniae}
Probab=39.27 E-value=83 Score=20.88 Aligned_cols=49 Identities=8% Similarity=0.078 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 034704 15 DMTAFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEM 63 (86)
Q Consensus 15 dLT~~Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm~qa 63 (86)
.|...|...|...-.-|.+-......++-+.-.+||.|+..|.+.....
T Consensus 18 ~M~~~v~~~l~~a~~al~~~d~~~a~~v~~~d~~iD~l~~~I~~~~~~l 66 (216)
T 2i0m_A 18 GLGQLVLETASKALLALASKDKEMAELIINKDHAINQGQSAIELTCARL 66 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555554455677778888889999999998887754
No 90
>2xgw_A Peroxide resistance protein; metal binding protein; 2.10A {Streptococcus pyogenes}
Probab=39.01 E-value=33 Score=24.16 Aligned_cols=30 Identities=17% Similarity=0.400 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 034704 24 LQQMQSRFQTMSESIIAKIDEMGSRIDELE 53 (86)
Q Consensus 24 LqQmQ~kFqtmS~~I~~RiDeMgsRIDdLE 53 (86)
+..+..+|..++.+...-+|++..||-.|+
T Consensus 74 F~~LH~~~ee~~~e~~~haD~lAERIl~LG 103 (199)
T 2xgw_A 74 FLYLHPKMDELLDSLNANLDEVSERLITIG 103 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 356788899999999999999999998775
No 91
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=38.56 E-value=1.2e+02 Score=23.39 Aligned_cols=27 Identities=15% Similarity=0.174 Sum_probs=20.7
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhc
Q 034704 38 IIAKIDEMGSRIDELEQSINDLRSEMG 64 (86)
Q Consensus 38 I~~RiDeMgsRIDdLEksI~dLm~qaG 64 (86)
+-..|+.+.++|++|+..|.+|+....
T Consensus 31 L~~~l~~~~~~i~~l~~~i~~l~~~~~ 57 (323)
T 1lwu_C 31 LSEMWRVNQQFVTRLQQQLVDIRQTCS 57 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445667778889999999988887643
No 92
>1tjo_A Iron-rich DPSA-homolog protein; ferritin, low-iron, metal binding protein; 1.60A {Halobacterium salinarum} SCOP: a.25.1.1 PDB: 1moj_A 1tk6_A 1tko_A 1tkp_A
Probab=38.56 E-value=42 Score=22.67 Aligned_cols=44 Identities=18% Similarity=0.298 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH----HHHHHHHhhccCC
Q 034704 24 LQQMQSRFQTMSESIIAKIDEMGSRIDELEQ----SINDLRSEMGIEG 67 (86)
Q Consensus 24 LqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEk----sI~dLm~qaG~e~ 67 (86)
+..+..+|...+.+...-+|++..||-.|.- ++.++..-+.+.+
T Consensus 60 f~~lh~~~ee~~~e~~~haD~laERI~~LGg~P~~~~~~~~~~s~i~e 107 (182)
T 1tjo_A 60 FRDLHLFLGEAAETAEEVADELAERVQALGGVPHASPETLQAEASVDV 107 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSHHHHHHHCCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHhCCCCC
Confidence 4557788999999999999999999988753 3344444444443
No 93
>3oj5_A Ferritin family protein; ferroxidase, cytosol, oxidoreductase; 2.85A {Mycobacterium tuberculosis} PDB: 3qd8_A
Probab=38.50 E-value=87 Score=20.93 Aligned_cols=45 Identities=18% Similarity=0.297 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCCCCCCCCCCCC
Q 034704 29 SRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEMGIEGSASPSLPSKS 77 (86)
Q Consensus 29 ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm~qaG~e~~~~~~~~~~~ 77 (86)
.+-..+-..++.+|.-||..+=.+++.+. .+.+... +++.+|+.-
T Consensus 133 e~~~~~l~~~l~~l~~~g~~l~~~d~~l~---~~~~~~~-~~~~~~~~~ 177 (189)
T 3oj5_A 133 IEEVALMATLVRVADRAGANLFELENFVA---REVDVAP-AASGAPHAA 177 (189)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHH---HHC--------------
T ss_pred HHHHHHHHHHHHHHHHhCchHhHHHHHHH---HhhCCCC-CCCCCCccc
Confidence 33334444555666666655444555544 3444444 566666543
No 94
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=38.10 E-value=1e+02 Score=24.88 Aligned_cols=57 Identities=11% Similarity=0.226 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHH-------------HHHHHHHhhhHHHHHHHHHHHHHhh-----ccCCCCCCCCCCC
Q 034704 20 VQNLLQQMQSRFQTMSESI-------------IAKIDEMGSRIDELEQSINDLRSEM-----GIEGSASPSLPSK 76 (86)
Q Consensus 20 Vq~LLqQmQ~kFqtmS~~I-------------~~RiDeMgsRIDdLEksI~dLm~qa-----G~e~~~~~~~~~~ 76 (86)
++.-+++++.+-..+|.+| +.++.+++.+|..||+.+.++-.+. .+-+.+.+..|.-
T Consensus 45 ~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~iPN~~~~~vP~g 119 (485)
T 3qne_A 45 LRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQVGNIVHESVVDS 119 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCCC
Confidence 3444677777777888765 4456777788888877777664443 4556666665543
No 95
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=38.01 E-value=58 Score=18.78 Aligned_cols=22 Identities=18% Similarity=0.373 Sum_probs=14.6
Q ss_pred HHHHhhhHHHHHHHHHHHHHhh
Q 034704 42 IDEMGSRIDELEQSINDLRSEM 63 (86)
Q Consensus 42 iDeMgsRIDdLEksI~dLm~qa 63 (86)
+-+=|.|||+|+..=.+|..++
T Consensus 27 vl~RGekLd~L~~ks~~L~~~s 48 (63)
T 1n7s_A 27 VLERDQKLSELDDRADALQAGA 48 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHH
Confidence 3444777777777777776655
No 96
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=37.95 E-value=90 Score=24.00 Aligned_cols=18 Identities=6% Similarity=0.196 Sum_probs=10.8
Q ss_pred HHHHHHHhhhHHHHHHHH
Q 034704 39 IAKIDEMGSRIDELEQSI 56 (86)
Q Consensus 39 ~~RiDeMgsRIDdLEksI 56 (86)
-.+|+++...|.+|+..+
T Consensus 39 ~~~i~~l~~~i~~l~~~~ 56 (323)
T 1lwu_C 39 QQFVTRLQQQLVDIRQTC 56 (323)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 355666666666666544
No 97
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=37.85 E-value=1.4e+02 Score=22.99 Aligned_cols=41 Identities=10% Similarity=0.262 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhc
Q 034704 24 LQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEMG 64 (86)
Q Consensus 24 LqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm~qaG 64 (86)
|+++...++.+-..+-..|...-.+|+.|=++|++|-.+.-
T Consensus 80 ~n~~~~~L~~~~~~~n~~i~~~V~~iN~l~~qIa~LN~qI~ 120 (463)
T 2d4y_A 80 FKTTDQYLRDQDKQVNIAIGSSVAQINNYAKQIANLNDQIS 120 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666777777778888888888888888888877753
No 98
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=37.60 E-value=59 Score=18.71 Aligned_cols=25 Identities=20% Similarity=0.514 Sum_probs=18.2
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHh
Q 034704 38 IIAKIDEMGSRIDELEQSINDLRSE 62 (86)
Q Consensus 38 I~~RiDeMgsRIDdLEksI~dLm~q 62 (86)
+-.|-.+|-.|..+||..|+-|-.+
T Consensus 8 LE~r~k~le~~naeLEervstLq~E 32 (42)
T 2oqq_A 8 LENRVKDLENKNSELEERLSTLQNE 32 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456777888888888888777554
No 99
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens}
Probab=37.57 E-value=89 Score=23.82 Aligned_cols=38 Identities=8% Similarity=0.211 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHH
Q 034704 24 LQQMQSRFQTMSESIIAKIDEM-GSRIDELEQSINDLRS 61 (86)
Q Consensus 24 LqQmQ~kFqtmS~~I~~RiDeM-gsRIDdLEksI~dLm~ 61 (86)
+++++.||..+|..|..-|+.- ..|+.|+-++|.+.+.
T Consensus 325 ~~e~~~r~e~IS~~~~~El~rF~~~Rv~Dfk~~l~eyle 363 (386)
T 4akv_A 325 ADGIRRRCRVVGFALQAEMNHFHQRRELDFKHMMQNYLR 363 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999887665 6788998888888765
No 100
>2c2u_A DPS, DNA-binding stress response protein; DNA-binding protein, iron; 1.1A {Deinococcus radiodurans} PDB: 2c2f_A 2f7n_A
Probab=37.54 E-value=29 Score=24.70 Aligned_cols=43 Identities=19% Similarity=0.323 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH----HHHHHHHhhccC
Q 034704 24 LQQMQSRFQTMSESIIAKIDEMGSRIDELEQ----SINDLRSEMGIE 66 (86)
Q Consensus 24 LqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEk----sI~dLm~qaG~e 66 (86)
+..++.+|..+..++..-+|++..||-.|.- ++.++..-+.+.
T Consensus 91 F~~LHe~~ee~~~e~~~haD~lAERIl~LGG~P~~t~~~~~~~s~I~ 137 (207)
T 2c2u_A 91 FRDLHLAYDEFIAEIFPSIDEQAERLVALGGSPLAAPADLARYSTVQ 137 (207)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHTTBCCCCSHHHHHHHCSSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHhCCCC
Confidence 4567888999999999999999999988863 344444444443
No 101
>3okg_A Restriction endonuclease S subunits; coiled-coil, type I methyltransferase, DNA binding, DNA BIND protein; 1.95A {Thermoanaerobacter tengcongensis}
Probab=37.12 E-value=82 Score=22.37 Aligned_cols=35 Identities=17% Similarity=0.233 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 034704 28 QSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSE 62 (86)
Q Consensus 28 Q~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm~q 62 (86)
|.|+-..-+.+..+|+..-+.+..|++.+..|+..
T Consensus 177 Q~~I~~~l~~~~~~i~~~~~~~~~~~~~~~~l~q~ 211 (412)
T 3okg_A 177 QRRIVAKVEALMERVREVRRLRAEAQKDTELLMQT 211 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555545555556666666666666666655543
No 102
>1sum_B Phosphate transport system protein PHOU homolog 2; ABC transport, PST, structural genomics, berkeley STRU genomics center, BSGC; 2.00A {Thermotoga maritima} SCOP: a.7.12.1
Probab=36.81 E-value=98 Score=21.04 Aligned_cols=49 Identities=16% Similarity=0.262 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 034704 15 DMTAFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEM 63 (86)
Q Consensus 15 dLT~~Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm~qa 63 (86)
.|...|...|...-.-|.+-......++-+.-.+||.|+..|.......
T Consensus 18 ~M~~~v~~~l~~a~~al~~~d~~~a~~V~~~d~~iD~l~~~I~~~~~~l 66 (235)
T 1sum_B 18 KAGWFIEKMFRNSISSLVERNESLAREVIADEEVVDQMEVEIQEKAMEV 66 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555455677778888888999999988776543
No 103
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=36.70 E-value=1.4e+02 Score=22.81 Aligned_cols=47 Identities=26% Similarity=0.320 Sum_probs=21.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHhhhHHHHHHHHHH
Q 034704 12 NTADMTAFVQNLLQQMQSRFQTMS----------ESIIAKIDEMGSRIDELEQSIND 58 (86)
Q Consensus 12 s~~dLT~~Vq~LLqQmQ~kFqtmS----------~~I~~RiDeMgsRIDdLEksI~d 58 (86)
+...|...++..-.--..||..|. .+|-.++.+.-+.|-.||++|+.
T Consensus 199 Nv~QL~~s~~~an~yTd~k~~~l~n~I~~V~n~~~q~~~~~~~~~~~~~~~~~~~~~ 255 (268)
T 2yo3_A 199 NYAQLKRSVEEANTYTDQKMGEMNSKIKGVENKMKQIEDKIEEILSKIYHIENEIAR 255 (268)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455565544443333333443332 23334445555555555555544
No 104
>1huw_A Human growth hormone; 2.00A {Homo sapiens} SCOP: a.26.1.1 PDB: 1kf9_A 1hwg_A 3hhr_A 1a22_A 1bp3_A 1hwh_A 1axi_A 1hgu_A 1z7c_A
Probab=36.67 E-value=21 Score=25.27 Aligned_cols=55 Identities=15% Similarity=0.191 Sum_probs=40.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHH-HHhhhHHHHHHHHHHHHHhhcc
Q 034704 11 QNTADMTAFVQNLLQQMQSRFQTMSESII-----AKID-EMGSRIDELEQSINDLRSEMGI 65 (86)
Q Consensus 11 ~s~~dLT~~Vq~LLqQmQ~kFqtmS~~I~-----~RiD-eMgsRIDdLEksI~dLm~qaG~ 65 (86)
.+..+|-.++-.||+-..+=.+.++..+. +.=| ++.+++.+||..|..|+.+...
T Consensus 70 ~s~~~LL~~~l~Ll~SW~~PL~~L~~~l~~~~~~~~~~~~i~~k~k~Leegi~~l~~~~~~ 130 (191)
T 1huw_A 70 KSNLELLRISLLLIQSWLEPVQFLRSVFANSLVYGASDSNVYDLLKDLEEGIQTLMGRLED 130 (191)
T ss_dssp SCHHHHHHHHHHHHHTTTTGGGGGHHHHHHCCSTTTTTCCHHHHHHHHHHHHHHHHHHHC-
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCChHHHHHHHHHHHHHHHHHHHHhcc
Confidence 46678888888888776666666555542 3335 7888899999999999988753
No 105
>3nvo_A Zinc transport protein ZNTB; alpha-beta-alpha sandwich, zinc efflux system, membrane, TRA protein; 2.30A {Salmonella enterica} PDB: 3nwi_A
Probab=36.35 E-value=22 Score=24.67 Aligned_cols=32 Identities=16% Similarity=0.427 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 034704 18 AFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSI 56 (86)
Q Consensus 18 ~~Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI 56 (86)
.++-.||..+-++|... ++.++.+||+||..|
T Consensus 147 ~ll~~lld~ivd~y~~~-------l~~l~~~id~lE~~l 178 (264)
T 3nvo_A 147 GWLVDVCDALTDHASEF-------IEELHDKIIDLEDNL 178 (264)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 45556666665555544 455555555666554
No 106
>1t72_A Phosphate transport system protein PHOU homolog; helix bundle, structural genomics, BSGC structure funded by NIH, protein structure initiative; 2.90A {Aquifex aeolicus} SCOP: a.7.12.1 PDB: 1t8b_A
Probab=36.28 E-value=95 Score=20.68 Aligned_cols=50 Identities=18% Similarity=0.218 Sum_probs=37.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 034704 12 NTADMTAFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRS 61 (86)
Q Consensus 12 s~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm~ 61 (86)
...+|...|...|...-+-|.+.......++-.+-..||.|+..|..-..
T Consensus 122 el~~m~~~v~~ml~~a~~a~~~~d~~~a~~v~~~d~~iD~l~~~i~~~~~ 171 (227)
T 1t72_A 122 NINFMSEIVKEMVNDSVISFIQQDTLLAKKVIEKDDTVDELYHQLERELM 171 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777888888888888777677777777778888888887765443
No 107
>4egw_A Magnesium transport protein CORA; magnesium transporter, magnesium binding, metal transp; 2.50A {Methanocaldococcus jannaschii}
Probab=35.82 E-value=36 Score=24.13 Aligned_cols=19 Identities=5% Similarity=0.335 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 034704 19 FVQNLLQQMQSRFQTMSES 37 (86)
Q Consensus 19 ~Vq~LLqQmQ~kFqtmS~~ 37 (86)
++-.||..+-++|-.+-+.
T Consensus 157 ll~~lld~ivd~y~~~l~~ 175 (280)
T 4egw_A 157 LLYHILNEITRSYSRILMN 175 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344455554444443333
No 108
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=35.41 E-value=69 Score=21.64 Aligned_cols=53 Identities=17% Similarity=0.409 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHH--HHHHHHHHH----------------HHHHHHhhhHHHHHHHHHHHHHh
Q 034704 10 KQNTADMTAFVQNLLQQMQSR--FQTMSESII----------------AKIDEMGSRIDELEQSINDLRSE 62 (86)
Q Consensus 10 ~~s~~dLT~~Vq~LLqQmQ~k--FqtmS~~I~----------------~RiDeMgsRIDdLEksI~dLm~q 62 (86)
......+..+|+.-+.+|..+ |-.++..=+ .+.+.+-..|+++++.|.+|..+
T Consensus 27 ee~L~~vA~~vd~km~ei~~~~~~~~l~~~r~aVLaALNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~e 97 (138)
T 3hnw_A 27 EEYLQRVASYINNKITEFNKEESYRRMSAELRTDMMYLNIADDYFKAKKMADSLSLDIENKDKEIYDLKHE 97 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888999999999844 765543322 24556666666666666666544
No 109
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=34.70 E-value=1.2e+02 Score=22.98 Aligned_cols=33 Identities=12% Similarity=0.329 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 034704 31 FQTMSESIIAKIDEMGSRIDELEQSINDLRSEM 63 (86)
Q Consensus 31 FqtmS~~I~~RiDeMgsRIDdLEksI~dLm~qa 63 (86)
|.+....+...+..-+.-|.+|++.|..+-.+-
T Consensus 160 f~~~~~~l~~~L~~~~~~I~~Lq~eI~~l~~~I 192 (346)
T 2nrj_A 160 FGSNKELLQSILKNQGADVDADQKRLEEVLGSV 192 (346)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHTGGG
T ss_pred HHhHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 666677777777666777777787777765543
No 110
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=34.68 E-value=69 Score=21.13 Aligned_cols=32 Identities=6% Similarity=0.354 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHH---hhhHHHHHHHHHHHH
Q 034704 29 SRFQTMSESIIAKIDEM---GSRIDELEQSINDLR 60 (86)
Q Consensus 29 ~kFqtmS~~I~~RiDeM---gsRIDdLEksI~dLm 60 (86)
.+++.+-..+..++... -.+|.++++.+..|-
T Consensus 19 qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l~~l~ 53 (151)
T 2zdi_C 19 QVLQAQAQILAQNLELLNLAKAEVQTVRETLENLK 53 (151)
T ss_dssp HHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666777778888 888999999888764
No 111
>3lt7_A Adhesin YADA; adhesion, coiled coil, trimeric autotransporter, cell adhesi membrane, cell outer membrane, membrane, plasmid, virulence; 1.50A {Yersinia enterocolitica} PDB: 3lt6_A* 3h7z_A 3h7x_A
Probab=34.42 E-value=73 Score=19.67 Aligned_cols=21 Identities=29% Similarity=0.521 Sum_probs=14.8
Q ss_pred HHHHHHhhhHHHHHHHHHHHH
Q 034704 40 AKIDEMGSRIDELEQSINDLR 60 (86)
Q Consensus 40 ~RiDeMgsRIDdLEksI~dLm 60 (86)
.|+..+..+||.+||....-+
T Consensus 34 ~KF~qL~nKi~k~~kr~~aGi 54 (64)
T 3lt7_A 34 HKFHQLENRLDKLEKRLLKLL 54 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhhhH
Confidence 456667778888888766433
No 112
>2bbh_A Divalent cation transport-related protein; transporter, Mg, membrane, structural genomics, structural G consortium, SGC; HET: DMU; 1.85A {Thermotoga maritima} SCOP: d.328.1.1
Probab=34.02 E-value=31 Score=24.00 Aligned_cols=20 Identities=15% Similarity=0.287 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 034704 20 VQNLLQQMQSRFQTMSESII 39 (86)
Q Consensus 20 Vq~LLqQmQ~kFqtmS~~I~ 39 (86)
+-.||..+-++|-.+-+.|-
T Consensus 173 l~~lld~ivd~y~~~l~~i~ 192 (269)
T 2bbh_A 173 LYSLIDALVDDYFVLLEKID 192 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555555555544433333
No 113
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=33.98 E-value=73 Score=18.71 Aligned_cols=16 Identities=19% Similarity=0.356 Sum_probs=6.4
Q ss_pred HHHHHHHHhhhHHHHH
Q 034704 38 IIAKIDEMGSRIDELE 53 (86)
Q Consensus 38 I~~RiDeMgsRIDdLE 53 (86)
|-.|++++..|-+.|-
T Consensus 83 i~~~l~~l~~rw~~L~ 98 (119)
T 3uun_A 83 VQEQMNLLNSRWECLR 98 (119)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444443333
No 114
>2bjn_A TPC6, trafficking protein particle complex subunit 6B; trapp complex, tethering, transport protein; 1.7A {Homo sapiens} PDB: 3kxc_C* 2cfh_C*
Probab=33.69 E-value=19 Score=24.74 Aligned_cols=33 Identities=15% Similarity=0.272 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhhH
Q 034704 17 TAFVQNLLQQMQSRFQTMS---ESIIAKIDEMGSRI 49 (86)
Q Consensus 17 T~~Vq~LLqQmQ~kFqtmS---~~I~~RiDeMgsRI 49 (86)
+-..-.+.++++.++.... +.+..||+.||-+|
T Consensus 10 ~~l~~ElV~~~~~~~~~~~~~~~~v~~~Le~mGy~i 45 (160)
T 2bjn_A 10 LLLHNEMVSGVYKSAEQGEVENGRCITKLENMGFRV 45 (160)
T ss_dssp HHHHHHHHHHHHHTCCTTTTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhhHh
Confidence 3344567778888887765 36889999998776
No 115
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=33.64 E-value=81 Score=19.14 Aligned_cols=21 Identities=19% Similarity=0.371 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHhhhHHH
Q 034704 31 FQTMSESIIAKIDEMGSRIDE 51 (86)
Q Consensus 31 FqtmS~~I~~RiDeMgsRIDd 51 (86)
+...+..|-..|++|-+.|+.
T Consensus 23 ~~~~~~~i~~~l~~L~~~v~~ 43 (103)
T 4i0x_B 23 ARGFKEFVTENLDQLESRAQK 43 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 116
>2d5k_A DPS, DPS family protein; four helix bundle, metal binding protein; 1.85A {Staphylococcus aureus subsp}
Probab=33.42 E-value=60 Score=21.09 Aligned_cols=30 Identities=17% Similarity=0.352 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 034704 24 LQQMQSRFQTMSESIIAKIDEMGSRIDELE 53 (86)
Q Consensus 24 LqQmQ~kFqtmS~~I~~RiDeMgsRIDdLE 53 (86)
+..+..+|...+.+...-+|.+..||-.|.
T Consensus 38 f~~lh~~~~~~~~ee~~had~iaERI~~lG 67 (156)
T 2d5k_A 38 FFSLHVKFEELYNEASQYVDELAERILAVG 67 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 345677888889999999999999987774
No 117
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=33.33 E-value=94 Score=19.79 Aligned_cols=35 Identities=23% Similarity=0.277 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 034704 27 MQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRS 61 (86)
Q Consensus 27 mQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm~ 61 (86)
+..+++.+-..+..++...-..|.++++.+..|-.
T Consensus 9 ~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~ 43 (133)
T 1fxk_C 9 QLNIYQSQVELIQQQMEAVRATISELEILEKTLSD 43 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33456666667777777788888888888777654
No 118
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=33.27 E-value=1.5e+02 Score=22.16 Aligned_cols=14 Identities=36% Similarity=0.498 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHH
Q 034704 19 FVQNLLQQMQSRFQ 32 (86)
Q Consensus 19 ~Vq~LLqQmQ~kFq 32 (86)
.+|.=|...|.+|.
T Consensus 401 ~~~~~~~~~~~~~~ 414 (471)
T 3mq9_A 401 LLQQELTEAQKGFQ 414 (471)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHH
Confidence 33444444555554
No 119
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=32.32 E-value=20 Score=26.94 Aligned_cols=25 Identities=24% Similarity=0.554 Sum_probs=18.9
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHH
Q 034704 37 SIIAKIDEMGSRIDELEQSINDLRS 61 (86)
Q Consensus 37 ~I~~RiDeMgsRIDdLEksI~dLm~ 61 (86)
.+-+|+|++..||++||..+.++..
T Consensus 3 ~lnsRvd~~EErIs~le~rleei~q 27 (233)
T 2yko_A 3 SLRSRCDQLEERVSAAEDEINEIKR 27 (233)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4668999999999999999988764
No 120
>2h8e_A Crossover junction endodeoxyribonuclease RUSA; homologous recombination, DNA repair, resolvase, hydrolase; 1.20A {Escherichia coli} PDB: 2h8c_A 1q8r_A
Probab=32.01 E-value=27 Score=22.29 Aligned_cols=18 Identities=22% Similarity=0.361 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHhhccC
Q 034704 49 IDELEQSINDLRSEMGIE 66 (86)
Q Consensus 49 IDdLEksI~dLm~qaG~e 66 (86)
||+|.|.|.|-++.+|+-
T Consensus 71 ~DN~~K~~~Dal~~~Gv~ 88 (120)
T 2h8e_A 71 LDNLQKAAFDALTKAGFW 88 (120)
T ss_dssp THHHHHHHHHHHHHHTSB
T ss_pred ccchHHHHHHHhcCCCcE
Confidence 899999999999999864
No 121
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=31.78 E-value=59 Score=21.13 Aligned_cols=45 Identities=16% Similarity=0.291 Sum_probs=27.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHH-HHhhhHHHHHHHHH
Q 034704 12 NTADMTAFVQNLLQQMQSRFQTMSESII---------AKID-EMGSRIDELEQSIN 57 (86)
Q Consensus 12 s~~dLT~~Vq~LLqQmQ~kFqtmS~~I~---------~RiD-eMgsRIDdLEksI~ 57 (86)
+..|+...++++=.++| .|+.|-.+|= .+|+ ++-.++..|.+.|.
T Consensus 4 ~~~d~~~li~t~s~niq-~l~k~~~qlGTkrD~~~LR~~l~~~l~~~~~~L~k~~~ 58 (97)
T 1hs7_A 4 KTKELSNLIETFAEQSR-VLEKECTKIGSKRDSKELRYKIETELIPNCTSVRDKIE 58 (97)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHTTSSSCCHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHH-HHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688888888888888 7776654432 2344 44444444544444
No 122
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=31.67 E-value=1e+02 Score=19.63 Aligned_cols=27 Identities=15% Similarity=0.336 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 034704 36 ESIIAKIDEMGSRIDELEQSINDLRSE 62 (86)
Q Consensus 36 ~~I~~RiDeMgsRIDdLEksI~dLm~q 62 (86)
..|..+++....||-.||..|..|-..
T Consensus 18 aa~~~ev~t~~~~l~~~e~~vqaL~~a 44 (74)
T 1avy_A 18 ASVRQEVNTAKGNISSLQGDVQALQEA 44 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhheeeccccchhhhhhhhhHHHHhc
Confidence 356778899999999999999999763
No 123
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=31.63 E-value=97 Score=22.56 Aligned_cols=26 Identities=15% Similarity=0.378 Sum_probs=11.8
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHH
Q 034704 36 ESIIAKIDEMGSRIDELEQSINDLRS 61 (86)
Q Consensus 36 ~~I~~RiDeMgsRIDdLEksI~dLm~ 61 (86)
+.+..++.++..|+.+|+..+..|-.
T Consensus 102 ~~l~~~~~~l~~~~~~L~~~~~~l~~ 127 (357)
T 3rrk_A 102 RPVASRAEVLGKERAALEEEIQTIEL 127 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444444443
No 124
>1yf2_A Type I restriction-modification enzyme, S subunit; structura genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii} SCOP: d.287.1.2 d.287.1.2
Probab=31.06 E-value=1.4e+02 Score=21.00 Aligned_cols=37 Identities=11% Similarity=0.159 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 034704 27 MQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEM 63 (86)
Q Consensus 27 mQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm~qa 63 (86)
.|.+|...-+.|..+|+..-.+|+.|++-=..||.++
T Consensus 380 eQ~~I~~~l~~ld~~i~~~~~~~~~l~~~k~~Ll~~l 416 (425)
T 1yf2_A 380 EQKQIAKILSSVDKSIELKKQKKEKLQRMKKKIMELL 416 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666677777777777777777777777665
No 125
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=30.74 E-value=2e+02 Score=22.66 Aligned_cols=57 Identities=23% Similarity=0.382 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------------HHHHHHhhhHHHHHHHHHHHHHhh-----ccCCCCCCCCCCC
Q 034704 20 VQNLLQQMQSRFQTMSESII-------------AKIDEMGSRIDELEQSINDLRSEM-----GIEGSASPSLPSK 76 (86)
Q Consensus 20 Vq~LLqQmQ~kFqtmS~~I~-------------~RiDeMgsRIDdLEksI~dLm~qa-----G~e~~~~~~~~~~ 76 (86)
++.-+++++.+-..+|.+|- .++.+++.+|..||+.+.++-.+. .+-+.+.+.+|.-
T Consensus 43 ~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~~~~vP~g 117 (455)
T 2dq0_A 43 KLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYYLWRLPNITHPSVPVG 117 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCCC
Confidence 34446677777777776663 456667778888887777765554 4566666666654
No 126
>1cnt_1 CNTF, ciliary neurotrophic factor; cytokine, growth factor; 2.40A {Homo sapiens} SCOP: a.26.1.1
Probab=30.42 E-value=73 Score=23.35 Aligned_cols=53 Identities=13% Similarity=0.181 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCCCCCCC
Q 034704 20 VQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEMGIEGSASPS 72 (86)
Q Consensus 20 Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm~qaG~e~~~~~~ 72 (86)
.+.++++=|+.|.--+..+...|-.+-.|.-.|=-+|+.||.-.|.--|+.+.
T Consensus 87 l~~vledqq~~~~P~~~~l~~~L~~~~l~v~~la~~l~~im~~L~~~iPpee~ 139 (187)
T 1cnt_1 87 LARLLEDQQVHFTPTEGDFHQAIHTLLLQVAAFAYQIEELMILLEYKIPRNEA 139 (187)
T ss_dssp HHHHHHHHHTTTSSSCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCSS
T ss_pred HHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence 33444444555554445677889999999999999999999999987775554
No 127
>1xwm_A PHOU, phosphate uptake regulator; negative phosphate uptake regulator, structural genomics, protein structure initiative, PSI; 2.50A {Geobacillus stearothermophilus} SCOP: a.7.12.1
Probab=30.12 E-value=1.1e+02 Score=20.23 Aligned_cols=48 Identities=17% Similarity=0.233 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 034704 13 TADMTAFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLR 60 (86)
Q Consensus 13 ~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm 60 (86)
..+|...|...|...-+-|.+.......++-.+-.+||+|++.+..-.
T Consensus 119 l~~m~~~v~~~l~~a~~a~~~~d~~~A~~v~~~d~~iD~l~~~~~~~~ 166 (217)
T 1xwm_A 119 LVLMYRLATDMVSTAIAAYDREDASLAAQIADMDHRVDEQYGEMMASL 166 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777777777877666666777777888999988776543
No 128
>2ovc_A Potassium voltage-gated channel subfamily KQT MEM; potassium channel, ION channel assemb coiled-coil, tetramer, transport protein; 2.07A {Homo sapiens}
Probab=29.61 E-value=39 Score=18.36 Aligned_cols=21 Identities=5% Similarity=0.396 Sum_probs=8.9
Q ss_pred HHHHHHHHhhhHHHHHHHHHH
Q 034704 38 IIAKIDEMGSRIDELEQSIND 58 (86)
Q Consensus 38 I~~RiDeMgsRIDdLEksI~d 58 (86)
|.+|+--+-+.+.++|+.++-
T Consensus 8 m~~Rl~kVE~qv~~md~KLd~ 28 (33)
T 2ovc_A 8 MMGRVVKVEKQVQSIEHKLDL 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433
No 129
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=29.61 E-value=1.4e+02 Score=23.07 Aligned_cols=57 Identities=18% Similarity=0.362 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHH-----------HHHHHHHhhhHHHHHHHHHHHHHhh-----ccCCCCCCCCCCC
Q 034704 20 VQNLLQQMQSRFQTMSESI-----------IAKIDEMGSRIDELEQSINDLRSEM-----GIEGSASPSLPSK 76 (86)
Q Consensus 20 Vq~LLqQmQ~kFqtmS~~I-----------~~RiDeMgsRIDdLEksI~dLm~qa-----G~e~~~~~~~~~~ 76 (86)
++.-+++++.+-..+|.+| +.++-+++.+|..||+.+.++-.+. .+-+.+.+..|.-
T Consensus 40 ~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~~~~vp~g 112 (421)
T 1ses_A 40 LKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEALLLQVPLPPWPGAPVG 112 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCTTSCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCC
Confidence 3344566666666666544 5667777888888888777765554 4556666665543
No 130
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=29.57 E-value=92 Score=18.50 Aligned_cols=25 Identities=24% Similarity=0.423 Sum_probs=19.4
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhh
Q 034704 39 IAKIDEMGSRIDELEQSINDLRSEM 63 (86)
Q Consensus 39 ~~RiDeMgsRIDdLEksI~dLm~qa 63 (86)
+.++.|=|.||+.|+..-.+|+.+|
T Consensus 24 i~kvlERGekL~~L~dkT~~L~~~A 48 (63)
T 1urq_A 24 RLALDERGQKLSDLEERTAAMMSSA 48 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888888888888888765
No 131
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=29.51 E-value=1e+02 Score=19.12 Aligned_cols=18 Identities=17% Similarity=0.436 Sum_probs=9.4
Q ss_pred hhhHHHHHHHHHHHHHhh
Q 034704 46 GSRIDELEQSINDLRSEM 63 (86)
Q Consensus 46 gsRIDdLEksI~dLm~qa 63 (86)
|.|||+|+..=.+|-.++
T Consensus 32 gekL~~L~~kt~~L~~~s 49 (91)
T 3hd7_A 32 DQKLSELDDRADALQAGA 49 (91)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHH
Confidence 555555555555554443
No 132
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=29.37 E-value=1.3e+02 Score=24.25 Aligned_cols=35 Identities=14% Similarity=0.446 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhH-------HHHHHHHHHHHHh
Q 034704 28 QSRFQTMSESIIAKIDEMGSRI-------DELEQSINDLRSE 62 (86)
Q Consensus 28 Q~kFqtmS~~I~~RiDeMgsRI-------DdLEksI~dLm~q 62 (86)
.++|...|+.+-.||-.+-.+| .-|+.+|.++..+
T Consensus 108 dn~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~k 149 (390)
T 1deq_A 108 DNTFKQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVD 149 (390)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3445566666666655554444 4466666666543
No 133
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=29.21 E-value=1.9e+02 Score=22.38 Aligned_cols=57 Identities=25% Similarity=0.431 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------------HHHHHHhhhHHHHHHHHHHHHHhh-----ccCCCCCCCCCCC
Q 034704 20 VQNLLQQMQSRFQTMSESII-------------AKIDEMGSRIDELEQSINDLRSEM-----GIEGSASPSLPSK 76 (86)
Q Consensus 20 Vq~LLqQmQ~kFqtmS~~I~-------------~RiDeMgsRIDdLEksI~dLm~qa-----G~e~~~~~~~~~~ 76 (86)
++.-+++++.+-..+|.+|- .++.+++.+|.+||+.+.++-.+. .+.+.+.+..|.-
T Consensus 42 ~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~~~~vp~g 116 (425)
T 2dq3_A 42 IIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEEELKNTLLWIPNLPHPSVPVG 116 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCCTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCC
Confidence 34457778888888888764 445666777777777666655443 4566666666543
No 134
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A*
Probab=29.17 E-value=1.5e+02 Score=22.12 Aligned_cols=38 Identities=24% Similarity=0.291 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHH
Q 034704 24 LQQMQSRFQTMSESIIAKIDEM-GSRIDELEQSINDLRS 61 (86)
Q Consensus 24 LqQmQ~kFqtmS~~I~~RiDeM-gsRIDdLEksI~dLm~ 61 (86)
+++.+.||..+|..+..-|+.- ..|+.|+-++|.+.+.
T Consensus 305 ~~~~~~r~e~is~~~~~El~rF~~~r~~Dfk~~l~~yl~ 343 (366)
T 3dyt_A 305 KQNMVKRVSIMSYALQAEMNHFHSNRIYDYNSVIRLYLE 343 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778899999999998776554 5678888888877654
No 135
>2vxx_A Starvation induced DNA binding protein; stress response protein, DPS, oxidation, iron binding, ferroxidase centre; HET: PG4; 2.40A {Synechococcus elongatus}
Probab=29.04 E-value=74 Score=21.40 Aligned_cols=31 Identities=19% Similarity=0.404 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 034704 24 LQQMQSRFQTMSESIIAKIDEMGSRIDELEQ 54 (86)
Q Consensus 24 LqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEk 54 (86)
+..+..+|...+.+...-+|.+..||-.|.-
T Consensus 59 f~~lh~~~~~~~~ee~~had~laErI~~LGg 89 (192)
T 2vxx_A 59 FYPLHQFFQDCYEQVQDHVHALGERLNGLGG 89 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3456667788888888888888888877753
No 136
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=28.95 E-value=95 Score=18.48 Aligned_cols=18 Identities=33% Similarity=0.619 Sum_probs=10.3
Q ss_pred hhhHHHHHHHHHHHHHhh
Q 034704 46 GSRIDELEQSINDLRSEM 63 (86)
Q Consensus 46 gsRIDdLEksI~dLm~qa 63 (86)
|.|||+|...-.+|..++
T Consensus 35 gekLd~L~~ks~~L~~~s 52 (74)
T 2nps_A 35 GERLDELQDKSESLSDNA 52 (74)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 566666666555555443
No 137
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma factor, transcription regulation; 2.60A {Escherichia coli} SCOP: a.177.1.1
Probab=28.70 E-value=1.6e+02 Score=21.42 Aligned_cols=32 Identities=16% Similarity=0.194 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhcc
Q 034704 34 MSESIIAKIDEMGSRIDELEQSINDLRS-EMGI 65 (86)
Q Consensus 34 mS~~I~~RiDeMgsRIDdLEksI~dLm~-qaG~ 65 (86)
.-+.|+.+|-++-.||..+|+.|..|.. .+|+
T Consensus 156 ~id~Lv~~lr~~~~~ir~~Er~i~~l~v~~~~m 188 (339)
T 1sig_A 156 QFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKM 188 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3456677788889999999999999984 4554
No 138
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=28.44 E-value=84 Score=20.14 Aligned_cols=30 Identities=17% Similarity=0.409 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 034704 31 FQTMSESIIAKIDEMGSRIDELEQSINDLR 60 (86)
Q Consensus 31 FqtmS~~I~~RiDeMgsRIDdLEksI~dLm 60 (86)
|..+....-.||..--..|++||+.+.-+-
T Consensus 10 F~~lv~~fe~rL~~Yr~~IeelE~~L~s~s 39 (93)
T 3t98_B 10 FRVLVQQFEVQLQQYRQQIEELENHLATQA 39 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 555555556677778888888888877654
No 139
>1ygt_A Cytoplasmic dynein light chain; domain swapping, protein transport; 1.70A {Drosophila melanogaster} PDB: 2pg1_E 3fm7_A
Probab=28.42 E-value=82 Score=19.90 Aligned_cols=20 Identities=5% Similarity=0.207 Sum_probs=14.2
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q 034704 8 DPKQNTADMTAFVQNLLQQM 27 (86)
Q Consensus 8 ~~~~s~~dLT~~Vq~LLqQm 27 (86)
+.+=.+.++...++..|+..
T Consensus 7 ~~~F~~~~v~~ii~~~l~~~ 26 (111)
T 1ygt_A 7 ESQFIVDDVSKTIKEAIETT 26 (111)
T ss_dssp -CCCCCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 44556788888888888753
No 140
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=28.36 E-value=1.2e+02 Score=19.38 Aligned_cols=46 Identities=24% Similarity=0.392 Sum_probs=34.1
Q ss_pred CHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 034704 12 NTADMTAFVQNLLQ------QMQSRFQTMSESIIAKIDEMGSRIDELEQSIN 57 (86)
Q Consensus 12 s~~dLT~~Vq~LLq------QmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~ 57 (86)
++..+..-|++|+. ..++....+-+.+|.|+|++++.-.-|--.+.
T Consensus 3 ~~~gmgkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~ 54 (77)
T 2w83_C 3 DPEFMGREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELE 54 (77)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 46677777888754 35666788999999999999987766544443
No 141
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=28.29 E-value=1e+02 Score=18.62 Aligned_cols=22 Identities=0% Similarity=0.206 Sum_probs=11.7
Q ss_pred HHHHHHhhhHHHHHHHHHHHHH
Q 034704 40 AKIDEMGSRIDELEQSINDLRS 61 (86)
Q Consensus 40 ~RiDeMgsRIDdLEksI~dLm~ 61 (86)
.+|..+..+++.|++.+.++-.
T Consensus 79 ~~i~~le~~~~~~~~~l~~lk~ 100 (107)
T 1fxk_A 79 LREKTIERQEERVMKKLQEMQV 100 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555543
No 142
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=27.53 E-value=1.1e+02 Score=18.83 Aligned_cols=35 Identities=14% Similarity=0.304 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 034704 20 VQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRS 61 (86)
Q Consensus 20 Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm~ 61 (86)
.++-|..+..+|.. .+.++...|..||..+..+..
T Consensus 15 Le~~l~e~E~~~~~-------~l~~~q~~i~~lE~el~~~r~ 49 (86)
T 1x8y_A 15 KEAKLRDLEDSLAR-------ERDTSRRLLAEKEREMAEMRA 49 (86)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666654 344455555555555555443
No 143
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=27.40 E-value=1.9e+02 Score=21.56 Aligned_cols=23 Identities=9% Similarity=0.283 Sum_probs=19.1
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhc
Q 034704 42 IDEMGSRIDELEQSINDLRSEMG 64 (86)
Q Consensus 42 iDeMgsRIDdLEksI~dLm~qaG 64 (86)
-..|-+.|+++++++.++-+||.
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~ 421 (471)
T 3mq9_A 399 THLLQQELTEAQKGFQDVEAQAA 421 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhh
Confidence 45688889999999999988874
No 144
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=27.05 E-value=2.5e+02 Score=22.71 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=20.0
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhh
Q 034704 39 IAKIDEMGSRIDELEQSINDLRSEM 63 (86)
Q Consensus 39 ~~RiDeMgsRIDdLEksI~dLm~qa 63 (86)
...++.+..+|..||..|..++...
T Consensus 174 ~~~~~~l~~ki~~l~~~~~~~~~~~ 198 (464)
T 1m1j_B 174 RAVIDSLHKKIQKLENAIATQTDYC 198 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3557888899999999998887653
No 145
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=27.02 E-value=2.5e+02 Score=22.60 Aligned_cols=39 Identities=15% Similarity=0.276 Sum_probs=24.8
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhh-----ccCCCCCCCCCCC
Q 034704 38 IIAKIDEMGSRIDELEQSINDLRSEM-----GIEGSASPSLPSK 76 (86)
Q Consensus 38 I~~RiDeMgsRIDdLEksI~dLm~qa-----G~e~~~~~~~~~~ 76 (86)
++.++.+++.+|..||+.+.++-.+. .+-+.+.+.+|.-
T Consensus 121 l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l~~iPN~~~~~vP~g 164 (501)
T 1wle_A 121 LRARGREIRKQLTLLYPKEAQLEEQFYLRALRLPNQTHPDVPVG 164 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCTTCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCC
Confidence 34445566777777777766665554 5666676766654
No 146
>1sum_B Phosphate transport system protein PHOU homolog 2; ABC transport, PST, structural genomics, berkeley STRU genomics center, BSGC; 2.00A {Thermotoga maritima} SCOP: a.7.12.1
Probab=26.97 E-value=1.3e+02 Score=20.47 Aligned_cols=48 Identities=15% Similarity=0.247 Sum_probs=35.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 034704 12 NTADMTAFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDL 59 (86)
Q Consensus 12 s~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dL 59 (86)
...+|...|...|...-+-|.+.......++-.+-.+||+|++.+..-
T Consensus 118 ~l~~m~~~v~~~l~~a~~a~~~~d~~~A~~v~~~d~~iD~l~~~l~~~ 165 (235)
T 1sum_B 118 DIPAMANQTSEMLKFALRMFADVNVEKSFEVCRMDSKVDDLYEKVREE 165 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777778888888888887766666777777778888888776643
No 147
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=26.73 E-value=1.9e+02 Score=21.25 Aligned_cols=48 Identities=4% Similarity=0.086 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 034704 13 TADMTAFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLR 60 (86)
Q Consensus 13 ~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm 60 (86)
..+|...+..+=+||+-+++.+-..+---+++|-+.|+.+.+.|.+=+
T Consensus 200 ~e~l~~~l~~~~~~~~qq~e~f~~~~~p~~e~~~~~l~~~~e~l~~~l 247 (273)
T 3s84_A 200 TEGLQKSLAELGGHLDQQVEEFRRRVEPYGENFNKALVQQMEQLRQKL 247 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHh
Confidence 344444444444555555444444444445666666665555544433
No 148
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=26.56 E-value=95 Score=18.55 Aligned_cols=25 Identities=32% Similarity=0.659 Sum_probs=14.7
Q ss_pred HHHHHHHH----HHhhhHHHHHHHHHHHH
Q 034704 36 ESIIAKID----EMGSRIDELEQSINDLR 60 (86)
Q Consensus 36 ~~I~~RiD----eMgsRIDdLEksI~dLm 60 (86)
..|+.|+. .+-.-|-.|||.|+.|-
T Consensus 23 enivarlendnanlekdianlekdianle 51 (56)
T 3he4_A 23 ENIVARLENDNANLEKDIANLEKDIANLE 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 34666663 23455667777777664
No 149
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=26.35 E-value=87 Score=22.32 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=15.8
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhh
Q 034704 40 AKIDEMGSRIDELEQSINDLRSEM 63 (86)
Q Consensus 40 ~RiDeMgsRIDdLEksI~dLm~qa 63 (86)
..|+....||..||+.|.++|.+.
T Consensus 97 kEie~~~~~i~~lE~eile~~e~i 120 (256)
T 3na7_A 97 IEEDIAKERSNQANREIENLQNEI 120 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446666677777777777776653
No 150
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=26.16 E-value=1e+02 Score=17.93 Aligned_cols=20 Identities=25% Similarity=0.459 Sum_probs=12.1
Q ss_pred HHhhhHHHHHHHHHHHHHhh
Q 034704 44 EMGSRIDELEQSINDLRSEM 63 (86)
Q Consensus 44 eMgsRIDdLEksI~dLm~qa 63 (86)
+=|.|||.|...=.+|..++
T Consensus 34 ~RgekLd~L~~ks~~L~~~s 53 (65)
T 1gl2_A 34 ARGENLDHLRNKTEDLEATS 53 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHH
Confidence 34666777766666665544
No 151
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=25.90 E-value=1.3e+02 Score=19.03 Aligned_cols=45 Identities=16% Similarity=0.222 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhhhHHHHHHHHHH
Q 034704 14 ADMTAFVQNLLQQMQSRFQ--------TMSESIIAKIDEMGSRIDELEQSIND 58 (86)
Q Consensus 14 ~dLT~~Vq~LLqQmQ~kFq--------tmS~~I~~RiDeMgsRIDdLEksI~d 58 (86)
.++-.=|+.-|.+++..|. .....|..-+.++..-|+||+++|.=
T Consensus 9 ~~V~~D~~~ql~~l~~~~~~~~~~~~~~~~~El~~~l~el~e~l~DL~~SI~i 61 (95)
T 2c5k_T 9 QQVVKDTKEQLNRINNYITRHNTAGDDDQEEEIQDILKDVEETIVDLDRSIIV 61 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCC--CTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666777776663 23355555566666666677766654
No 152
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.70 E-value=1.6e+02 Score=19.85 Aligned_cols=22 Identities=14% Similarity=0.433 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhhhHHHHHHHHH
Q 034704 36 ESIIAKIDEMGSRIDELEQSIN 57 (86)
Q Consensus 36 ~~I~~RiDeMgsRIDdLEksI~ 57 (86)
..+..-+...-.||+.||++.+
T Consensus 78 ~KM~~nL~~v~~RL~~Le~~~~ 99 (116)
T 2dl1_A 78 QKMKETLQNVRTRLEILEKGLA 99 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhcCC
Confidence 3344445666778889999877
No 153
>2i0m_A Phosphate transport system protein PHOU; zinc-binding protein, structural genomics, PSI-2, PROT structure initiative; 2.40A {Streptococcus pneumoniae}
Probab=25.65 E-value=1.5e+02 Score=19.59 Aligned_cols=48 Identities=15% Similarity=0.168 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 034704 13 TADMTAFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLR 60 (86)
Q Consensus 13 ~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm 60 (86)
..+|...|...|...-+-|.+.......++-.+-..||+|++.+..-.
T Consensus 119 l~~m~~~v~~~l~~a~~a~~~~d~~~a~~v~~~d~~iD~l~~~~~~~~ 166 (216)
T 2i0m_A 119 LHQMGKLSLSMLADLLVAFPLHQASKAISIAQKDEQIDQYYYALSKEI 166 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGTCHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777777777777666777788888889999998886543
No 154
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=25.63 E-value=1.2e+02 Score=18.54 Aligned_cols=24 Identities=13% Similarity=0.259 Sum_probs=15.7
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHH
Q 034704 38 IIAKIDEMGSRIDELEQSINDLRS 61 (86)
Q Consensus 38 I~~RiDeMgsRIDdLEksI~dLm~ 61 (86)
+-.++.....++.+|++.+..++.
T Consensus 89 le~~~~~l~~~l~~lk~~l~~~~~ 112 (117)
T 2zqm_A 89 LERQEKKLNEKLKELTAQIQSALR 112 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 445566666777777777777664
No 155
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1
Probab=25.61 E-value=83 Score=20.31 Aligned_cols=19 Identities=21% Similarity=0.380 Sum_probs=8.1
Q ss_pred HHHHHhhhHHHHHHHHHHH
Q 034704 41 KIDEMGSRIDELEQSINDL 59 (86)
Q Consensus 41 RiDeMgsRIDdLEksI~dL 59 (86)
+|..|-++|..|+..+..|
T Consensus 24 ~l~~L~~~~~~L~~~l~~l 42 (168)
T 1buu_A 24 KLANMEAEINTLKSKLELT 42 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 156
>2y7c_A Type-1 restriction enzyme ecoki specificity prote; transferase; 18.00A {Escherichia coli} PDB: 2y7h_A*
Probab=25.33 E-value=94 Score=22.32 Aligned_cols=18 Identities=17% Similarity=0.473 Sum_probs=8.0
Q ss_pred HHHHHHHHhhhHHHHHHH
Q 034704 38 IIAKIDEMGSRIDELEQS 55 (86)
Q Consensus 38 I~~RiDeMgsRIDdLEks 55 (86)
|+.+|+..-+.||.|+..
T Consensus 381 Iv~~l~~~~~~id~l~~~ 398 (464)
T 2y7c_A 381 IVRRVEQLFAYADTIEKQ 398 (464)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 157
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=25.29 E-value=1.5e+02 Score=19.47 Aligned_cols=47 Identities=13% Similarity=0.360 Sum_probs=29.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 034704 12 NTADMTAFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSE 62 (86)
Q Consensus 12 s~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm~q 62 (86)
+..+-..|++.=+..+......+ -..+.+...+|..++.+|..++.+
T Consensus 95 ~~~eA~~~l~~ri~~l~~~l~~l----~~~l~~l~~~i~~~~~~l~~l~~~ 141 (151)
T 2zdi_C 95 SIDEAISFLEKRLKEYDEAIKKT----QGALAELEKRIGEVARKAQEVQQK 141 (151)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHTHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666566555555543 344566777778888888887764
No 158
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=25.22 E-value=50 Score=22.80 Aligned_cols=18 Identities=22% Similarity=0.259 Sum_probs=8.1
Q ss_pred HHHHHHHHHHhhhHHHHH
Q 034704 36 ESIIAKIDEMGSRIDELE 53 (86)
Q Consensus 36 ~~I~~RiDeMgsRIDdLE 53 (86)
..|-.++|++++.+++|.
T Consensus 62 ~~l~~~ld~l~~~~~~l~ 79 (165)
T 1gs9_A 62 ALMDETMKELKAYKSELE 79 (165)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444445544444443
No 159
>1ydx_A Type I restriction enzyme specificity protein Mg4; type-I HSDS, DNA binding protein; 2.30A {Mycoplasma genitalium} SCOP: d.287.1.2 d.287.1.2
Probab=25.14 E-value=1.9e+02 Score=20.69 Aligned_cols=36 Identities=14% Similarity=0.166 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 034704 28 QSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEM 63 (86)
Q Consensus 28 Q~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm~qa 63 (86)
|.+|...-+.|..+|+..-.+|+.|++--..||.++
T Consensus 357 Q~~I~~~l~~id~~i~~~~~~i~~L~~lk~~LL~~l 392 (406)
T 1ydx_A 357 QRKAGKIVFLLDQKLDQYKKELSSLTVIRDTLLKKL 392 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555666777777778888887777777776
No 160
>3r2k_A Bacterioferritin, BFR; bacterial ferritin, iron binding, iron storage, iron homeost iron release, iron mobilization; 1.55A {Pseudomonas aeruginosa} SCOP: a.25.1.0 PDB: 3r2h_A 3r2l_A 3r2m_A 3r2o_A 3r2r_A 3r2s_A
Probab=24.74 E-value=76 Score=19.95 Aligned_cols=29 Identities=21% Similarity=0.204 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 034704 24 LQQMQSRFQTMSESIIAKIDEMGSRIDEL 52 (86)
Q Consensus 24 LqQmQ~kFqtmS~~I~~RiDeMgsRIDdL 52 (86)
+..+...|...+.+...-.|.+..||-.|
T Consensus 37 ~~~l~~~f~~~a~ee~~had~l~eri~~l 65 (154)
T 3r2k_A 37 FSKLYERLNHEMEEETQHADALLRRILLL 65 (154)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45677777777777777777777777554
No 161
>2clb_A DPS-like protein; DI-iron carboxylate, hypothetical protein, bacterioferritin, hydrogen peroxide, metal binding protein, archaea; 2.4A {Sulfolobus solfataricus}
Probab=24.72 E-value=56 Score=22.26 Aligned_cols=29 Identities=17% Similarity=0.105 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 034704 25 QQMQSRFQTMSESIIAKIDEMGSRIDELE 53 (86)
Q Consensus 25 qQmQ~kFqtmS~~I~~RiDeMgsRIDdLE 53 (86)
..+...|...+.+...-+|++..||-.|.
T Consensus 57 ~~lh~~f~~~~~ee~~haD~iaERI~~LG 85 (188)
T 2clb_A 57 EGLKEIAEDARLEDRLHFELMTQRIYELG 85 (188)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 35677888899999999999999998775
No 162
>1ecm_A Endo-oxabicyclic transition state analogue; P-protein, chorismate mutase domain, chorismate mutase; HET: TSA; 2.20A {Escherichia coli} SCOP: a.130.1.1
Probab=24.67 E-value=58 Score=20.40 Aligned_cols=21 Identities=19% Similarity=0.359 Sum_probs=14.2
Q ss_pred HHHHhhhHHHHHHHHHHHHHh
Q 034704 42 IDEMGSRIDELEQSINDLRSE 62 (86)
Q Consensus 42 iDeMgsRIDdLEksI~dLm~q 62 (86)
|++.=.+||++-+.|-+|+.+
T Consensus 7 L~~lR~~ID~iD~~L~~LL~~ 27 (109)
T 1ecm_A 7 LLALREKISALDEKLLALLAE 27 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 566666777777777776654
No 163
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=24.09 E-value=72 Score=23.68 Aligned_cols=27 Identities=19% Similarity=0.367 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034704 19 FVQNLLQQMQSRFQTMSESIIAKIDEM 45 (86)
Q Consensus 19 ~Vq~LLqQmQ~kFqtmS~~I~~RiDeM 45 (86)
++..||..+-++|..+-+.|-.++|++
T Consensus 181 ll~~lld~ivd~y~~~l~~l~~~id~l 207 (363)
T 2iub_A 181 LLYSLIDALVDDYFVLLEKIDDEIDVL 207 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555444444444433
No 164
>2e9x_C GINS complex subunit 3; eukaryotic DNA replication; HET: DNA; 2.30A {Homo sapiens} SCOP: a.278.1.3 d.344.1.4 PDB: 2eho_D* 2q9q_D*
Probab=23.93 E-value=56 Score=23.50 Aligned_cols=43 Identities=26% Similarity=0.413 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhHHHHHHHHHHH
Q 034704 17 TAFVQNLLQQMQSRFQTMSESIIAKI----DEMGSRIDELEQSINDL 59 (86)
Q Consensus 17 T~~Vq~LLqQmQ~kFqtmS~~I~~Ri----DeMgsRIDdLEksI~dL 59 (86)
..+.+.|++-+..||-.+.+...... .+.-.++|.+|+.|=..
T Consensus 135 ~~L~~~L~~tf~~R~~~I~d~a~~~~~~~~~~~~~~Ld~~Er~Lf~~ 181 (219)
T 2e9x_C 135 ADISQSLLQTFIGRFRRIMDSSQNAYNEDTSALVARLDEMERGLFQT 181 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSCCCCHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccHHHHHhcCCHHHHHHHHH
Confidence 45667788889999998888776553 34688999999987653
No 165
>1yf2_A Type I restriction-modification enzyme, S subunit; structura genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii} SCOP: d.287.1.2 d.287.1.2
Probab=23.80 E-value=1.9e+02 Score=20.25 Aligned_cols=36 Identities=19% Similarity=0.279 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 034704 28 QSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEM 63 (86)
Q Consensus 28 Q~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm~qa 63 (86)
|.|+-..-+.|-.+|+..-+.|+.|++--..||.++
T Consensus 171 Q~~I~~~l~~ld~~i~~~~~~i~~l~~~k~~l~~~~ 206 (425)
T 1yf2_A 171 QKQIAKILTKIDEGIEIIEKSINKLERIKKGLMHKL 206 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444544444555666666666666666666666554
No 166
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=23.52 E-value=3.2e+02 Score=22.71 Aligned_cols=38 Identities=26% Similarity=0.419 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh-------hhHHHHHHHHHHHHHh
Q 034704 25 QQMQSRFQTMSESIIAKIDEMG-------SRIDELEQSINDLRSE 62 (86)
Q Consensus 25 qQmQ~kFqtmS~~I~~RiDeMg-------sRIDdLEksI~dLm~q 62 (86)
++..++|...|+.+-.||..+- ++|.-|-.+|.++..+
T Consensus 103 ~dndn~~~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~sk 147 (491)
T 1m1j_A 103 QQLDENYGHVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVE 147 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666666666554444 4444566666665543
No 167
>1bgf_A STAT-4; transcription factor, regulation, DNA-binding; 1.45A {Mus musculus} SCOP: a.90.1.1
Probab=23.51 E-value=87 Score=20.93 Aligned_cols=25 Identities=32% Similarity=0.436 Sum_probs=19.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Q 034704 12 NTADMTAFVQNLLQQMQSRFQTMSE 36 (86)
Q Consensus 12 s~~dLT~~Vq~LLqQmQ~kFqtmS~ 36 (86)
.-..-+.++++||++|+.+...++.
T Consensus 50 ~e~~A~~l~~~Ll~eL~~~~~~~~~ 74 (124)
T 1bgf_A 50 NETMATILLQNLLIQLDEQLGRVSK 74 (124)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3445578999999999999876543
No 168
>1woz_A 177AA long conserved hypothetical protein (ST1454; structural genomics, unknown function; 1.94A {Sulfolobus tokodaii}
Probab=23.42 E-value=1.1e+02 Score=21.46 Aligned_cols=42 Identities=26% Similarity=0.381 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHhhhHHHHHHHHHHHHHhh
Q 034704 20 VQNLLQQMQSRFQTMSESIIA-----KIDEMGSRIDELEQSINDLRSEM 63 (86)
Q Consensus 20 Vq~LLqQmQ~kFqtmS~~I~~-----RiDeMgsRIDdLEksI~dLm~qa 63 (86)
+...|.++|...-.+...+-+ +|.+ ..|+.||+-|..+..+.
T Consensus 50 ~~~~L~~IQ~~Lf~lga~la~~~~~~~i~~--~~v~~LE~~id~~~~~l 96 (177)
T 1woz_A 50 MKKDLERVQVELFEIGEDLSTQSSKKKIDE--KYVKWLEERTVEYRKES 96 (177)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSSCCCCH--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccccCCCH--HHHHHHHHHHHHHHhhC
Confidence 445566777776555555554 1221 56889999999888876
No 169
>2xze_Q Charged multivesicular BODY protein 3; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=23.30 E-value=47 Score=18.79 Aligned_cols=14 Identities=43% Similarity=0.665 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHH
Q 034704 21 QNLLQQMQSRFQTM 34 (86)
Q Consensus 21 q~LLqQmQ~kFqtm 34 (86)
+.-+..||+||+.+
T Consensus 25 Eedi~~MqsRLaAL 38 (40)
T 2xze_Q 25 EEALEAMQSRLATL 38 (40)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 35688899999875
No 170
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Probab=23.30 E-value=1.9e+02 Score=20.06 Aligned_cols=32 Identities=9% Similarity=0.234 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 034704 25 QQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLR 60 (86)
Q Consensus 25 qQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm 60 (86)
+.+..+...|.. .|+....+|.+||+.|.+|-
T Consensus 39 ~~~~~h~~~~~~----~i~~~~~~i~~~~~~l~~l~ 70 (228)
T 1flk_A 39 GLLESQLSRHDQ----MLSVHDIRLADMDLRFQVLE 70 (228)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhh
Confidence 334444444432 24555566666666666543
No 171
>3cue_B Transport protein particle 31 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=23.29 E-value=76 Score=24.36 Aligned_cols=35 Identities=20% Similarity=0.413 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 034704 14 ADMTAFVQNLLQQMQSRFQTMSESIIAKIDEMGSRI 49 (86)
Q Consensus 14 ~dLT~~Vq~LLqQmQ~kFqtmS~~I~~RiDeMgsRI 49 (86)
.-++-....+.++++.++.+.+ .+..||+.||-+|
T Consensus 60 s~fafLf~EmV~~~~~~~~~~~-e~e~rLe~mGy~I 94 (283)
T 3cue_B 60 SAMAFLFQEMISQLHRTCKTAG-DFETKLSDYGHNI 94 (283)
T ss_dssp HHHHHHHHHHHHHHHHHCSSHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCchH-HHHHHHHHhhhhh
Confidence 4455567788888888888765 4788999888766
No 172
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=23.07 E-value=48 Score=19.39 Aligned_cols=19 Identities=26% Similarity=0.587 Sum_probs=13.1
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHh
Q 034704 40 AKIDEMGSRIDELEQSINDLRSE 62 (86)
Q Consensus 40 ~RiDeMgsRIDdLEksI~dLm~q 62 (86)
+|.||+. -|++|+.+|-.+
T Consensus 24 rRfdEV~----~L~~NL~EL~~E 42 (48)
T 3v1a_A 24 GRMDEVR----TLQENLHQLMHE 42 (48)
T ss_dssp TCHHHHH----HHHHHHHHHHHH
T ss_pred cChHHHH----HHHHHHHHHHHH
Confidence 4566644 488888888665
No 173
>1p68_A De novo designed protein S-824; four helix bundle, de novo protein; NMR {Escherichia coli} SCOP: k.8.1.1 PDB: 2jua_A
Probab=22.87 E-value=1.7e+02 Score=19.23 Aligned_cols=53 Identities=23% Similarity=0.474 Sum_probs=37.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHhhh-------HHHHHHHHHHHHH
Q 034704 9 PKQNTADMTAFVQNLLQQMQS---------RFQTMSESIIAKIDEMGSR-------IDELEQSINDLRS 61 (86)
Q Consensus 9 ~~~s~~dLT~~Vq~LLqQmQ~---------kFqtmS~~I~~RiDeMgsR-------IDdLEksI~dLm~ 61 (86)
.+.+..|+...+|++++.+.+ |.|.|-.++-.-+|++.+. +-.+|+||.++..
T Consensus 26 gkdnlhdvdnhlqnviedihdfmqgggsggklqemmkefqqvldelnnhlqggkhtvhhieqnikeifh 94 (102)
T 1p68_A 26 GKDNLHDVDNHLQNVIEDIHDFMQGGGSGGKLQEMMKEFQQVLDELNNHLQGGKHTVHHIEQNIKEIFH 94 (102)
T ss_dssp CSTTTHHHHHHHHHHHHHHHTTTTTSSTTTHHHHTHHHHHHHHHHHHTTCCSCHHHHHHHHHHHTTHHH
T ss_pred CccchhhHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHhHHHHHH
Confidence 455778888888888887764 5667777766667777654 4577888876653
No 174
>1nog_A Conserved hypothetical protein TA0546; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics; 1.55A {Thermoplasma acidophilum} SCOP: a.25.2.2
Probab=22.83 E-value=1.1e+02 Score=21.41 Aligned_cols=42 Identities=21% Similarity=0.438 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHhhhHHHHHHHHHHHHHhh
Q 034704 20 VQNLLQQMQSRFQTMSESIIAK-----IDEMGSRIDELEQSINDLRSEM 63 (86)
Q Consensus 20 Vq~LLqQmQ~kFqtmS~~I~~R-----iDeMgsRIDdLEksI~dLm~qa 63 (86)
+...|.++|...-.+...+-+- |.+ ..|+.||+-|..+..+.
T Consensus 51 ~~~~L~~IQ~~Lf~lga~la~~~~~~~i~~--~~v~~LE~~id~~~~~l 97 (177)
T 1nog_A 51 IRNDLFRIQNDLFVLGEDVSTGGKGRTVTR--EMIDYLEARVKEMKAEI 97 (177)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSSSCCCH--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcccCCCH--HHHHHHHHHHHHHHhhC
Confidence 4445667777665555555542 221 66889999999998876
No 175
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=22.67 E-value=2.6e+02 Score=21.34 Aligned_cols=40 Identities=13% Similarity=0.284 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 034704 23 LLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSE 62 (86)
Q Consensus 23 LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm~q 62 (86)
.+++-......--.+|-.+|+...+|+..+|++|.++...
T Consensus 206 s~~~an~yTd~k~~~l~n~I~~V~n~~~q~~~~~~~~~~~ 245 (268)
T 2yo3_A 206 SVEEANTYTDQKMGEMNSKIKGVENKMKQIEDKIEEILSK 245 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555667777777888888888888887653
No 176
>2qqy_A Sigma B operon; dodecameric alpha-helical, ferritin fold, structural genomic protein structure initiative; 2.00A {Bacillus anthracis str}
Probab=22.64 E-value=1.3e+02 Score=18.28 Aligned_cols=28 Identities=14% Similarity=0.162 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 034704 25 QQMQSRFQTMSESIIAKIDEMGSRIDEL 52 (86)
Q Consensus 25 qQmQ~kFqtmS~~I~~RiDeMgsRIDdL 52 (86)
..+...|...+.+-..-.|.+..||..|
T Consensus 42 ~~l~~~f~~~a~ee~~Ha~~l~e~i~~l 69 (149)
T 2qqy_A 42 QVLKPFFESEISDEQGHALYLAEKIKTL 69 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3455666666666666666666666543
No 177
>1fzc_B Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_B* 1fza_B* 1fze_B* 1fzf_B* 1fzg_B* 1n86_B* 1n8e_B 2h43_B* 2hlo_B* 2hod_B* 2hpc_B* 2q9i_B* 2xnx_B 2xny_B 3e1i_B* 2z4e_B* 2oyh_B* 1ltj_B* 1rf0_B* 1lt9_B* ...
Probab=22.50 E-value=30 Score=26.55 Aligned_cols=25 Identities=16% Similarity=0.283 Sum_probs=19.7
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhh
Q 034704 39 IAKIDEMGSRIDELEQSINDLRSEM 63 (86)
Q Consensus 39 ~~RiDeMgsRIDdLEksI~dLm~qa 63 (86)
-..++.+..+|..||..|..++...
T Consensus 36 q~~le~l~~KIq~Le~~v~~~~~~~ 60 (328)
T 1fzc_B 36 RSILENLRSKIQKLESDVSAQMEYC 60 (328)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3456788899999999998887653
No 178
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=22.24 E-value=50 Score=19.48 Aligned_cols=19 Identities=26% Similarity=0.639 Sum_probs=12.3
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHh
Q 034704 40 AKIDEMGSRIDELEQSINDLRSE 62 (86)
Q Consensus 40 ~RiDeMgsRIDdLEksI~dLm~q 62 (86)
+|+||+. -||.|+.+|-.+
T Consensus 25 ~r~DEV~----~Le~NLrEL~~e 43 (51)
T 1yzm_A 25 GRMDEVR----TLQENLRQLQDE 43 (51)
T ss_dssp TCHHHHH----HHHHHHHHHHHH
T ss_pred CCcHHHH----HHHHHHHHHHHH
Confidence 4556543 478888887654
No 179
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=22.09 E-value=1.2e+02 Score=17.33 Aligned_cols=20 Identities=25% Similarity=0.489 Sum_probs=11.7
Q ss_pred HHhhhHHHHHHHHHHHHHhh
Q 034704 44 EMGSRIDELEQSINDLRSEM 63 (86)
Q Consensus 44 eMgsRIDdLEksI~dLm~qa 63 (86)
+=|.|||.|...=.+|..++
T Consensus 27 ~RgekLd~L~~ks~~L~~~s 46 (61)
T 3b5n_A 27 ERGERLTSIEDKADNLAVSA 46 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHH
Confidence 33666666666666655544
No 180
>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C
Probab=22.02 E-value=2.2e+02 Score=20.25 Aligned_cols=10 Identities=20% Similarity=0.547 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 034704 15 DMTAFVQNLL 24 (86)
Q Consensus 15 dLT~~Vq~LL 24 (86)
+|...++.++
T Consensus 11 em~~~i~~i~ 20 (213)
T 3g67_A 11 NLNRLFQELV 20 (213)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3344444333
No 181
>1szq_A 2-methylcitrate dehydratase; propionate catabolism, 2-methylcitric acid cycle structural genomics target, NYSGXRC, PSI; 2.70A {Escherichia coli} SCOP: e.44.1.1
Probab=21.76 E-value=1.1e+02 Score=23.93 Aligned_cols=37 Identities=19% Similarity=0.275 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHH-----HHHHHHhhhHHHHHH-HHHHHHH
Q 034704 25 QQMQSRFQTMSESII-----AKIDEMGSRIDELEQ-SINDLRS 61 (86)
Q Consensus 25 qQmQ~kFqtmS~~I~-----~RiDeMgsRIDdLEk-sI~dLm~ 61 (86)
.++..||..+...++ .||-+.-.+++.|+. .+.+|+.
T Consensus 437 ~~l~~KF~~~~~~~~~~~~~~~i~~~~~~le~~~~~~v~~l~~ 479 (483)
T 1szq_A 437 PKLVDKFKINLARQFPTRQQQRILEVSLDRARLEQMPVNEYLD 479 (483)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHCHHHHHHSBHHHHHT
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHhChhccccCCHHHHHH
Confidence 367788877654333 455555556677776 6888775
No 182
>2xhe_A UNC18; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=21.73 E-value=1.6e+02 Score=23.72 Aligned_cols=49 Identities=14% Similarity=0.224 Sum_probs=29.6
Q ss_pred CCCCHHHHHHHHHHH--HHHHHHHH---HHHHHHHHHHHHHHhhhHHHHHHHHH
Q 034704 9 PKQNTADMTAFVQNL--LQQMQSRF---QTMSESIIAKIDEMGSRIDELEQSIN 57 (86)
Q Consensus 9 ~~~s~~dLT~~Vq~L--LqQmQ~kF---qtmS~~I~~RiDeMgsRIDdLEksI~ 57 (86)
..+++.||..||..| +++++.++ -++...|+..+..==.++=++|++|.
T Consensus 320 ~~~s~~~lk~~V~~LP~~~~~~~~l~~H~~ia~~l~~~i~~~l~~~~~~EQ~l~ 373 (650)
T 2xhe_A 320 GEGGAGALKQMLKDLPQHREQMQKYSLHLDMSNAINMAFSSTIDSCTKAEQNIV 373 (650)
T ss_dssp STTTHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456899999999985 34444343 36667777666541112335677664
No 183
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=21.56 E-value=2.3e+02 Score=20.27 Aligned_cols=58 Identities=12% Similarity=0.128 Sum_probs=33.0
Q ss_pred CHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH----------HHHhhhHHHHHHHHHHHHHhhccCCCC
Q 034704 12 NTADMTAFVQNLLQQMQ----------SRFQTMSESIIAKI----------DEMGSRIDELEQSINDLRSEMGIEGSA 69 (86)
Q Consensus 12 s~~dLT~~Vq~LLqQmQ----------~kFqtmS~~I~~Ri----------DeMgsRIDdLEksI~dLm~qaG~e~~~ 69 (86)
|...|++-+..+...|- .-|++..++--+-+ +---+.+|+||+.|+.+-+..--=.|.
T Consensus 21 Sl~qL~nrla~~~am~~sqqq~~eqlS~eFqtal~eAq~Atd~ye~ai~n~~sA~~~~d~lekKl~~aq~kL~~L~P~ 98 (158)
T 3tul_A 21 SLSQLESRLAVWQAMIESQKEMGIQVSKEFQTALGEAQEATDLYEASIKKTDTAKSVYDAATKKLTQAQNKLQSLDPA 98 (158)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTC--CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45566655555553332 33887777444444 444577889999988776654433333
No 184
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=21.49 E-value=1e+02 Score=17.68 Aligned_cols=14 Identities=21% Similarity=0.518 Sum_probs=6.6
Q ss_pred HHHHHhhhHHHHHH
Q 034704 41 KIDEMGSRIDELEQ 54 (86)
Q Consensus 41 RiDeMgsRIDdLEk 54 (86)
+|.+.-.|+.+||+
T Consensus 24 kI~~lqkKlkeLee 37 (42)
T 2l5g_B 24 QISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444444
No 185
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=21.35 E-value=62 Score=21.25 Aligned_cols=17 Identities=35% Similarity=0.816 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHHHhhc
Q 034704 48 RIDELEQSINDLRSEMG 64 (86)
Q Consensus 48 RIDdLEksI~dLm~qaG 64 (86)
-+++|.++|..|..+.|
T Consensus 79 ~~~el~~~I~~LrqEl~ 95 (98)
T 4fm3_A 79 QLGELDKSLKRLRKQLG 95 (98)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 35666666666666665
No 186
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=21.32 E-value=3.2e+02 Score=22.02 Aligned_cols=34 Identities=15% Similarity=0.304 Sum_probs=17.6
Q ss_pred HHHHhhhHHHHHHHHHHHHHhh-----ccCCCCCCCCCC
Q 034704 42 IDEMGSRIDELEQSINDLRSEM-----GIEGSASPSLPS 75 (86)
Q Consensus 42 iDeMgsRIDdLEksI~dLm~qa-----G~e~~~~~~~~~ 75 (86)
.-++..+|..||+.+.++-.+. .+-+.+.+..|.
T Consensus 113 ~~~l~~~i~~le~~~~~~~~~~~~~l~~iPN~~~~~vP~ 151 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQQLEEERDKLMLNVGNILHESVPI 151 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCC
Confidence 3445555655555555443332 455666666554
No 187
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=21.27 E-value=1.4e+02 Score=19.12 Aligned_cols=28 Identities=14% Similarity=0.369 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 034704 36 ESIIAKIDEMGSRIDELEQSINDLRSEM 63 (86)
Q Consensus 36 ~~I~~RiDeMgsRIDdLEksI~dLm~qa 63 (86)
++|-.||...-.+++.|++.|..+..+.
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~a~L 31 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDALAKL 31 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566777888888888888888886654
No 188
>3puk_A Syntaxin-binding protein 3; membrane trafficking, SM protein, snare proteins, binding protein, endocytosis-exocytosis complex; 3.05A {Mus musculus} PDB: 2pjx_A
Probab=20.98 E-value=1.2e+02 Score=24.46 Aligned_cols=48 Identities=15% Similarity=0.257 Sum_probs=30.1
Q ss_pred CCCHHHHHHHHHHH--HHHHHHHH---HHHHHHHHHHHHHHhhhHHHHHHHHH
Q 034704 10 KQNTADMTAFVQNL--LQQMQSRF---QTMSESIIAKIDEMGSRIDELEQSIN 57 (86)
Q Consensus 10 ~~s~~dLT~~Vq~L--LqQmQ~kF---qtmS~~I~~RiDeMgsRIDdLEksI~ 57 (86)
..+..||..||..| +++.+.+. -++...|+..+..==.++=++|++|.
T Consensus 321 ~~s~~dl~~~v~~lp~~~~~~~~l~~H~~ia~~l~~~~~~~l~~~~e~EQ~l~ 373 (592)
T 3puk_A 321 KTSLSALTQLMKKMPHFRKQISKQVVHLNLAEDCMNKFKLNIEKLCKTEQDLA 373 (592)
T ss_dssp --CCTTHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999986 34444443 47888888877641122346777764
No 189
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=20.94 E-value=1.2e+02 Score=16.73 Aligned_cols=15 Identities=7% Similarity=0.213 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHH
Q 034704 15 DMTAFVQNLLQQMQS 29 (86)
Q Consensus 15 dLT~~Vq~LLqQmQ~ 29 (86)
.|...+..+...++.
T Consensus 41 ~l~~~~n~m~~~l~~ 55 (115)
T 3zrx_A 41 ILAKSIERLRRSLKQ 55 (115)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 190
>1zs3_A Lactococcus lactis Mg1363 DPSA; oxidative stress, DNA binding, lactic acid bacteria, DNA binding protein; 2.70A {Lactococcus lactis} SCOP: a.25.1.1
Probab=20.91 E-value=93 Score=21.65 Aligned_cols=25 Identities=0% Similarity=0.008 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHH
Q 034704 28 QSRFQTMSESIIAKIDEMGSRIDEL 52 (86)
Q Consensus 28 Q~kFqtmS~~I~~RiDeMgsRIDdL 52 (86)
+.+|..+-+++...+|+++.||-.|
T Consensus 58 H~~fee~y~~~~~~~D~iAERi~~L 82 (182)
T 1zs3_A 58 CEYLREIAQREVEYFFKISDLLLDE 82 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 5668999999999999999998766
No 191
>1zuj_A Hypothetical protein llacc01001955; oxidative stress, DPS, DNA binding, lactic acid bacteria, DN protein; 2.90A {Lactococcus lactis} SCOP: a.25.1.1
Probab=20.88 E-value=93 Score=21.58 Aligned_cols=41 Identities=10% Similarity=0.128 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHH----HHHHHHHHh-hccCCC
Q 034704 28 QSRFQTMSESIIAKIDEMGSRIDELE----QSINDLRSE-MGIEGS 68 (86)
Q Consensus 28 Q~kFqtmS~~I~~RiDeMgsRIDdLE----ksI~dLm~q-aG~e~~ 68 (86)
+.+|..+-+++...+|+++.||-.|= .++.++..- +.+++.
T Consensus 57 H~~fee~y~~~~~~~D~iAERi~~LG~~p~~t~~e~~~~~s~i~e~ 102 (179)
T 1zuj_A 57 RIKFREIALKEDEWFYLISEQLLDENELVPTTLDEFVSNHKFIEND 102 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSHHHHHHHCCSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHhcCcCCCC
Confidence 56689999999999999999997763 234455544 444443
No 192
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=20.83 E-value=1.1e+02 Score=16.52 Aligned_cols=10 Identities=40% Similarity=0.890 Sum_probs=4.8
Q ss_pred hhHHHHHHHH
Q 034704 47 SRIDELEQSI 56 (86)
Q Consensus 47 sRIDdLEksI 56 (86)
.|+|-||..+
T Consensus 20 ~r~drle~tv 29 (32)
T 2akf_A 20 ERLDRLEETV 29 (32)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4455555443
No 193
>2dae_A KIAA0733 protein; mitogen-activated protein kinase kinase kinase 7 interacting protein 2, MAP3K7IP2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.81 E-value=24 Score=22.63 Aligned_cols=41 Identities=17% Similarity=0.360 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhc
Q 034704 22 NLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEMG 64 (86)
Q Consensus 22 ~LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEksI~dLm~qaG 64 (86)
.||.+|+.||.++.+.++.+- |..-=.+||+=|..|-.+++
T Consensus 12 qvfheLkQrFPEvPd~VVsqc--~~qN~~Nl~aC~~~L~qES~ 52 (75)
T 2dae_A 12 QVLHDLRQKFPEVPEVVVSRC--MLQNNNNLDACCAVLSQEST 52 (75)
T ss_dssp HHHHHHHHHSSSSCHHHHHHH--HTTTTSCSHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCcHHHHHHH--HHHhccCHHHHHHHHHHhcc
Confidence 478999999999999999764 44444456666666666654
No 194
>3uoi_A Bacterioferritin, BFR; structural genomics, TB structural genomics consortium, TBSG ferroxidation and iron storage, cytosol; HET: HEM; 1.90A {Mycobacterium tuberculosis} PDB: 3uof_A* 3qb9_A* 2wtl_A* 3bkn_A*
Probab=20.75 E-value=1e+02 Score=19.43 Aligned_cols=29 Identities=17% Similarity=0.206 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 034704 24 LQQMQSRFQTMSESIIAKIDEMGSRIDEL 52 (86)
Q Consensus 24 LqQmQ~kFqtmS~~I~~RiDeMgsRIDdL 52 (86)
+..+...|...+.+-..-.|.+..||..|
T Consensus 39 ~~~l~~~f~~~a~ee~~Had~l~e~i~~l 67 (161)
T 3uoi_A 39 FTELAAHTRAESFDEMRHAEEITDRILLL 67 (161)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34456666666666666666666666444
No 195
>2jmh_A BLO T 5, mite allergen BLO T 5; DUST mites, group 5; NMR {Blomia tropicalis} PDB: 2jrk_A
Probab=20.62 E-value=1.7e+02 Score=20.01 Aligned_cols=29 Identities=17% Similarity=0.405 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 034704 23 LLQQMQSRFQTMSESIIAKIDEMGSRIDELEQS 55 (86)
Q Consensus 23 LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEks 55 (86)
|.+.++.+|..+-..++ ..+..|.+||++
T Consensus 20 Lv~~~~~~~~k~E~~Ll----~Ls~Qi~~LE~t 48 (119)
T 2jmh_A 20 LIEQANHAIEKGEHQLL----YLQHQLDELNEN 48 (119)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHhc
Confidence 45667777766544333 456677777776
No 196
>3mq1_A Mite allergen DER P 5; DUST mite; HET: MRD MPD; 2.80A {Dermatophagoides pteronyssinus}
Probab=20.53 E-value=1.1e+02 Score=20.59 Aligned_cols=29 Identities=10% Similarity=0.365 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 034704 23 LLQQMQSRFQTMSESIIAKIDEMGSRIDELEQS 55 (86)
Q Consensus 23 LLqQmQ~kFqtmS~~I~~RiDeMgsRIDdLEks 55 (86)
|.+.++.+|..+-..++ ..+..|++||++
T Consensus 5 Lv~~~~~~~~k~E~~Ll----~Ls~Qi~~LEkt 33 (103)
T 3mq1_A 5 LMERIHEQIKKGELALF----YLQEQINHFEEK 33 (103)
T ss_dssp CHHHHHHHHHHHHHHHH----HHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHcc
Confidence 56677777776544333 456677777775
No 197
>3r2v_A PB2 C-terminal subunit; structural genomics, seattle structural genomics center for infectious disease, ssgcid, polymerase BASI H3N2, H1N1; 1.30A {Influenza a virus} PDB: 2vy6_A 3cw4_A 3l56_A 3kc6_A 3khw_A 2gmo_A 2jdq_D
Probab=20.52 E-value=87 Score=23.21 Aligned_cols=33 Identities=33% Similarity=0.491 Sum_probs=23.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 034704 7 EDPKQNTADMTAFVQNLLQQMQSRFQTM-SESII 39 (86)
Q Consensus 7 ~~~~~s~~dLT~~Vq~LLqQmQ~kFqtm-S~~I~ 39 (86)
--|+.....-..||.+|+|||.+-..+| ..|||
T Consensus 46 lvPka~r~qYSGFvRtlfqQMRDvlgtf~T~QiI 79 (216)
T 3r2v_A 46 LVPKAIRSQYSGFVRTLFQQMRDVLGTFDTTQII 79 (216)
T ss_dssp TSCTTTHHHHHHHHHHHHHHHHHSTTCCCHHHHH
T ss_pred hchHHHhhhhhHHHHHHHHHHHHHHccchhhhhh
Confidence 3466677788999999999999854433 14555
No 198
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=20.28 E-value=1.3e+02 Score=19.04 Aligned_cols=13 Identities=23% Similarity=0.511 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHH
Q 034704 22 NLLQQMQSRFQTM 34 (86)
Q Consensus 22 ~LLqQmQ~kFqtm 34 (86)
.+|||+.-.+-++
T Consensus 30 ~~~~~~~~~~~~~ 42 (77)
T 3mtu_E 30 EALQQLRVNYGSF 42 (77)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4677777766553
No 199
>2d8d_A Aroag, phospho-2-dehydro-3-deoxyheptonate aldolase/chori mutase; chorismate, dimer, structural genomics, NPPSFA; 1.15A {Thermus thermophilus} SCOP: a.130.1.1 PDB: 2d8e_A
Probab=20.26 E-value=1e+02 Score=18.53 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=13.0
Q ss_pred HHHHhhhHHHHHHHHHHHHHh
Q 034704 42 IDEMGSRIDELEQSINDLRSE 62 (86)
Q Consensus 42 iDeMgsRIDdLEksI~dLm~q 62 (86)
|++.-.+||.+-+.|-+|+.+
T Consensus 5 L~~lR~~ID~iD~~l~~Ll~~ 25 (90)
T 2d8d_A 5 IQALRKEVDRVNREILRLLSE 25 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666666554
No 200
>3emo_C HIA (adhesin); transmembrane, outer membrane, trimeric autotransporter, membrane protein/cell adhesion complex; 3.00A {Haemophilus influenzae}
Probab=20.21 E-value=2.2e+02 Score=19.70 Aligned_cols=28 Identities=0% Similarity=0.259 Sum_probs=19.3
Q ss_pred HHHHHHHHhhhHHHHHHHH----HHHHHhhcc
Q 034704 38 IIAKIDEMGSRIDELEQSI----NDLRSEMGI 65 (86)
Q Consensus 38 I~~RiDeMgsRIDdLEksI----~dLm~qaG~ 65 (86)
+-.||+.+..||++++|.. +--+.-+++
T Consensus 70 ~~~~in~L~~~I~~~~k~a~aGiA~A~A~A~L 101 (162)
T 3emo_C 70 LAGQVNNLEGKVNKVGKRADAGTASALAASQL 101 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHhhhhhhHHhHHHHHHHHHHhccC
Confidence 4567788888888888776 444455555
Done!