BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034705
         (86 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1QA3|A Chain A, Tailspike Protein, Mutant A334i
          Length = 554

 Score = 26.2 bits (56), Expect = 4.7,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 2   VGSITFLKNTGDFVKKGDEFGYFSF 26
           V SI FL+N G F + G   G+ S+
Sbjct: 219 VSSIQFLRNNGGFERDGGVIGFTSY 243


>pdb|1QQ1|A Chain A, Tailspike Protein, Mutant E359g
          Length = 559

 Score = 26.2 bits (56), Expect = 5.0,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)

Query: 2   VGSITFLKNTGDFVKKGDEFGYFSF--GGSTV 31
           V S  FL+N G F + G   G+ S+  GGS V
Sbjct: 224 VSSAQFLRNNGGFERDGGVIGFTSYRAGGSGV 255


>pdb|1QA2|A Chain A, Tailspike Protein, Mutant A334v
          Length = 554

 Score = 25.8 bits (55), Expect = 7.2,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 2   VGSITFLKNTGDFVKKGDEFGYFSF 26
           V S+ FL+N G F + G   G+ S+
Sbjct: 219 VSSVQFLRNNGGFERDGGVIGFTSY 243


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.137    0.378 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,327,915
Number of Sequences: 62578
Number of extensions: 78164
Number of successful extensions: 204
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 201
Number of HSP's gapped (non-prelim): 6
length of query: 86
length of database: 14,973,337
effective HSP length: 54
effective length of query: 32
effective length of database: 11,594,125
effective search space: 371012000
effective search space used: 371012000
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)