Query 034705
Match_columns 86
No_of_seqs 114 out of 1000
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 05:38:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034705.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034705hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02964 phosphatidylserine de 99.9 2.2E-23 4.8E-28 172.8 6.1 83 1-83 561-643 (644)
2 PRK00723 phosphatidylserine de 99.8 8.1E-22 1.7E-26 150.8 4.6 67 1-67 228-294 (297)
3 KOG2419 Phosphatidylserine dec 99.8 1.5E-20 3.2E-25 157.2 2.1 68 1-68 892-959 (975)
4 PRK09629 bifunctional thiosulf 99.7 3.8E-17 8.3E-22 134.5 4.7 50 12-68 559-608 (610)
5 PRK03140 phosphatidylserine de 99.7 1.1E-16 2.4E-21 120.2 4.9 59 1-67 200-258 (259)
6 PRK00044 psd phosphatidylserin 99.6 1.4E-16 3E-21 121.1 4.7 51 12-69 237-287 (288)
7 PLN02938 phosphatidylserine de 99.6 1.5E-16 3.2E-21 127.5 4.8 50 12-68 364-426 (428)
8 PTZ00403 phosphatidylserine de 99.6 2E-16 4.2E-21 124.1 4.3 51 12-70 291-341 (353)
9 TIGR00163 PS_decarb phosphatid 99.6 3.9E-16 8.5E-21 115.8 5.0 48 12-66 189-236 (238)
10 PRK03934 phosphatidylserine de 99.6 1.3E-15 2.8E-20 114.7 5.2 57 1-66 191-264 (265)
11 PF02666 PS_Dcarbxylase: Phosp 99.6 2.2E-15 4.7E-20 108.6 5.1 57 1-66 143-202 (202)
12 TIGR00164 PS_decarb_rel phosph 99.3 2.3E-12 4.9E-17 92.8 4.8 54 2-65 129-182 (189)
13 PRK05305 phosphatidylserine de 99.2 3.6E-11 7.9E-16 87.5 4.7 53 2-64 149-201 (206)
14 COG0688 Psd Phosphatidylserine 99.1 6.1E-11 1.3E-15 88.9 3.2 58 1-64 180-239 (239)
15 KOG2420 Phosphatidylserine dec 98.9 2E-09 4.3E-14 85.3 4.4 45 11-64 337-382 (382)
16 cd06850 biotinyl_domain The bi 89.3 1.1 2.4E-05 25.3 4.3 24 3-26 8-32 (67)
17 PRK08225 acetyl-CoA carboxylas 85.1 1.9 4.2E-05 25.6 3.8 53 6-66 14-68 (70)
18 PRK05889 putative acetyl-CoA c 83.4 3.3 7.1E-05 24.9 4.3 57 3-66 11-69 (71)
19 PF00364 Biotin_lipoyl: Biotin 78.7 3.9 8.4E-05 24.8 3.5 53 7-66 20-73 (74)
20 PRK07051 hypothetical protein; 71.3 6.9 0.00015 24.1 3.3 51 9-67 26-78 (80)
21 PF13533 Biotin_lipoyl_2: Biot 66.8 7.5 0.00016 22.1 2.6 17 8-24 17-33 (50)
22 TIGR00531 BCCP acetyl-CoA carb 63.9 12 0.00026 26.2 3.7 26 1-26 87-120 (156)
23 cd06849 lipoyl_domain Lipoyl d 58.1 28 0.00061 18.7 4.6 24 7-30 20-43 (74)
24 PF01551 Peptidase_M23: Peptid 54.2 8.9 0.00019 23.7 1.5 17 9-25 57-73 (96)
25 PLN02983 biotin carboxyl carri 53.2 26 0.00057 27.4 4.2 53 8-67 219-272 (274)
26 PRK06302 acetyl-CoA carboxylas 52.8 23 0.00051 24.7 3.6 26 1-26 86-119 (155)
27 TIGR00830 PTBA PTS system, glu 48.1 18 0.0004 24.6 2.4 19 8-26 85-103 (121)
28 COG0511 AccB Biotin carboxyl c 46.5 25 0.00054 24.1 2.9 25 1-25 77-102 (140)
29 PRK06748 hypothetical protein; 43.7 24 0.00052 22.6 2.3 60 3-69 13-75 (83)
30 cd06251 M14_ASTE_ASPA_like_1 A 41.6 52 0.0011 24.8 4.2 20 6-25 231-250 (287)
31 cd06663 Biotinyl_lipoyl_domain 41.2 72 0.0016 18.5 4.3 21 7-27 19-39 (73)
32 PRK14875 acetoin dehydrogenase 41.2 56 0.0012 24.0 4.2 56 6-68 21-77 (371)
33 PF12700 HlyD_2: HlyD family s 40.9 29 0.00063 25.3 2.7 23 4-26 31-53 (328)
34 PF07831 PYNP_C: Pyrimidine nu 40.3 30 0.00065 21.5 2.3 22 5-26 34-55 (75)
35 cd06903 lectin_EMP46_EMP47 EMP 40.1 21 0.00045 26.3 1.8 30 13-45 11-41 (215)
36 cd06902 lectin_ERGIC-53_ERGL E 39.7 24 0.00052 26.1 2.1 32 10-44 10-41 (225)
37 cd00210 PTS_IIA_glc PTS_IIA, P 39.0 31 0.00067 23.6 2.4 19 8-26 85-103 (124)
38 PRK05641 putative acetyl-CoA c 37.2 77 0.0017 22.3 4.3 21 6-26 97-117 (153)
39 TIGR01347 sucB 2-oxoglutarate 34.7 72 0.0016 25.6 4.2 56 6-68 19-75 (403)
40 PLN02226 2-oxoglutarate dehydr 34.4 70 0.0015 26.6 4.2 53 6-68 110-166 (463)
41 PF01597 GCV_H: Glycine cleava 33.8 1.3E+02 0.0028 20.0 4.8 45 2-47 30-79 (122)
42 PF04468 PSP1: PSP1 C-terminal 32.9 42 0.00091 21.2 2.2 39 22-61 47-86 (88)
43 cd06253 M14_ASTE_ASPA_like_3 A 32.9 34 0.00074 26.1 2.0 51 8-67 243-297 (298)
44 PRK09439 PTS system glucose-sp 32.5 45 0.00098 24.0 2.5 19 8-26 107-125 (169)
45 cd06255 M14_ASTE_ASPA_like_5 A 31.5 42 0.00092 25.4 2.3 23 7-29 244-268 (293)
46 TIGR02994 ectoine_eutE ectoine 31.4 41 0.00089 26.2 2.3 18 7-24 268-285 (325)
47 PF13375 RnfC_N: RnfC Barrel s 30.1 37 0.0008 22.3 1.6 18 8-25 45-62 (101)
48 PTZ00144 dihydrolipoamide succ 29.5 98 0.0021 25.3 4.2 54 6-68 63-119 (418)
49 PRK06549 acetyl-CoA carboxylas 29.2 1.3E+02 0.0028 20.7 4.3 21 6-26 74-94 (130)
50 KOG1881 Anion exchanger adapto 28.4 30 0.00064 30.7 1.1 16 23-38 252-267 (793)
51 PRK05704 dihydrolipoamide succ 28.3 1.1E+02 0.0023 24.7 4.2 56 6-68 21-77 (407)
52 cd06254 M14_ASTE_ASPA_like_4 A 28.0 53 0.0011 24.7 2.3 17 8-24 237-253 (288)
53 cd06252 M14_ASTE_ASPA_like_2 A 27.3 55 0.0012 25.0 2.3 16 8-23 258-273 (316)
54 PRK10871 nlpD lipoprotein NlpD 26.9 37 0.00081 26.8 1.4 15 9-23 274-288 (319)
55 PF00358 PTS_EIIA_1: phosphoen 26.7 46 0.001 22.9 1.7 19 8-26 89-107 (132)
56 PF00529 HlyD: HlyD family sec 26.0 47 0.001 23.9 1.7 16 8-23 16-31 (305)
57 cd06250 M14_PaAOTO_like An unc 25.8 60 0.0013 25.5 2.3 54 6-67 301-358 (359)
58 TIGR03077 not_gcvH glycine cle 25.6 84 0.0018 20.9 2.7 47 2-48 29-79 (110)
59 PF08544 GHMP_kinases_C: GHMP 25.5 53 0.0011 19.2 1.6 10 28-37 59-68 (85)
60 PF03388 Lectin_leg-like: Legu 25.4 43 0.00093 24.5 1.4 33 10-45 10-42 (229)
61 PRK00624 glycine cleavage syst 25.4 88 0.0019 21.0 2.8 34 2-35 31-66 (114)
62 TIGR00998 8a0101 efflux pump m 24.7 75 0.0016 23.6 2.6 18 8-25 57-74 (334)
63 TIGR01348 PDHac_trf_long pyruv 24.3 1.5E+02 0.0032 24.7 4.5 55 6-68 18-74 (546)
64 PF14005 YpjP: YpjP-like prote 23.8 15 0.00033 26.0 -1.2 29 57-85 21-50 (136)
65 COG2190 NagE Phosphotransferas 23.2 79 0.0017 22.7 2.3 19 8-26 92-110 (156)
66 PRK11856 branched-chain alpha- 22.9 1.6E+02 0.0034 23.3 4.2 56 6-68 21-77 (411)
67 PRK10476 multidrug resistance 22.6 85 0.0018 23.8 2.6 19 7-25 62-80 (346)
68 TIGR02712 urea_carbox urea car 22.5 1.5E+02 0.0032 27.4 4.4 23 3-25 1141-1164(1201)
69 PF02749 QRPTase_N: Quinolinat 21.3 95 0.0021 19.3 2.2 21 5-25 47-67 (88)
70 PRK11855 dihydrolipoamide acet 21.3 1.7E+02 0.0036 24.3 4.2 56 6-68 20-76 (547)
71 KOG0557 Dihydrolipoamide acety 21.2 1.3E+02 0.0028 25.3 3.5 59 3-68 53-114 (470)
72 PRK13380 glycine cleavage syst 20.9 1.8E+02 0.004 20.1 3.8 36 1-36 42-79 (144)
73 PRK11854 aceF pyruvate dehydro 20.8 1.8E+02 0.004 24.6 4.4 56 6-68 19-75 (633)
74 PF12141 DUF3589: Protein of u 20.7 37 0.00079 28.4 0.3 12 20-31 62-73 (498)
75 PRK03598 putative efflux pump 20.6 96 0.0021 23.3 2.5 18 8-25 58-75 (331)
76 PRK09282 pyruvate carboxylase 20.5 1.8E+02 0.004 24.6 4.3 55 6-67 535-590 (592)
77 TIGR02971 heterocyst_DevB ABC 20.2 99 0.0022 23.0 2.5 20 7-26 30-49 (327)
No 1
>PLN02964 phosphatidylserine decarboxylase
Probab=99.88 E-value=2.2e-23 Score=172.75 Aligned_cols=83 Identities=67% Similarity=1.044 Sum_probs=78.1
Q ss_pred CcccEEEEeeCCCeeeccceeeeeecCCceEEEEEeCCceeechhhhhcCcccceeeEeccccccccchhhhccCCcchh
Q 034705 1 MVGSITFLKNTGDFVKKGDEFGYFSFGGSTVICVFEKDAIQIDKDLLQNSARALETLVSVGMRMGVSKKEILQTELPSLE 80 (86)
Q Consensus 1 ~VgsI~~~~~~g~~v~KGeElG~F~fGGSTvVllfe~~~i~~~~~l~~~~~~~~et~V~~G~~ig~~~~~~~~~~~~~~~ 80 (86)
|||||++++++|..++||||+|||+|||||||||||++++.||+|+.+++..++||.|+|||.||+.........+|.++
T Consensus 561 ~VgsI~~~~~~g~~v~KGdE~G~F~fGGSTvVllFe~~~i~~d~dl~~~s~~~~Et~V~~Ge~iG~~~~~~~~~~~~~~~ 640 (644)
T PLN02964 561 MVGSITFVKKEGDHVKKGDELGYFSFGGSTVICVFEKDAIDIDEDLLANSERSLETLVSVGMTLGVSTRTFARQVLEKSR 640 (644)
T ss_pred EeeEEEEEecCCCEEccCcEeeeeecCCceEEEEecCCCcccChhhhhccccccceeEecChhhcccchhhccccccccc
Confidence 69999999999999999999999999999999999999999999999999999999999999999998887777777777
Q ss_pred hhh
Q 034705 81 ACV 83 (86)
Q Consensus 81 ~~~ 83 (86)
.|.
T Consensus 641 ~~~ 643 (644)
T PLN02964 641 PTI 643 (644)
T ss_pred cCc
Confidence 764
No 2
>PRK00723 phosphatidylserine decarboxylase; Provisional
Probab=99.84 E-value=8.1e-22 Score=150.79 Aligned_cols=67 Identities=51% Similarity=0.711 Sum_probs=64.3
Q ss_pred CcccEEEEeeCCCeeeccceeeeeecCCceEEEEEeCCceeechhhhhcCcccceeeEecccccccc
Q 034705 1 MVGSITFLKNTGDFVKKGDEFGYFSFGGSTVICVFEKDAIQIDKDLLQNSARALETLVSVGMRMGVS 67 (86)
Q Consensus 1 ~VgsI~~~~~~g~~v~KGeElG~F~fGGSTvVllfe~~~i~~~~~l~~~~~~~~et~V~~G~~ig~~ 67 (86)
+||||++++++|..++||||+|+|+|||||||||||+++++|++++..++..+.|+.|+|||.||+.
T Consensus 228 ~VgsI~~~~~~g~~v~KGeE~G~F~fGGSTvvllfe~~~i~~~~~l~~~~~~~~~~~V~~G~~ig~~ 294 (297)
T PRK00723 228 CVGSIIQTYKPNKKVKKGDEKGYFKFGGSTVILFFEKNKIKIDADILEQSKLGYETKVLMGESIGRK 294 (297)
T ss_pred EeeEEEEEecCCCEEecCcCccccccCCCcEEEEEcCCccccChhhhhccccCcccEEEcCHHHhhh
Confidence 5899999999999999999999999999999999999999999999999999999999999999975
No 3
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=99.80 E-value=1.5e-20 Score=157.21 Aligned_cols=68 Identities=68% Similarity=1.113 Sum_probs=66.0
Q ss_pred CcccEEEEeeCCCeeeccceeeeeecCCceEEEEEeCCceeechhhhhcCcccceeeEeccccccccc
Q 034705 1 MVGSITFLKNTGDFVKKGDEFGYFSFGGSTVICVFEKDAIQIDKDLLQNSARALETLVSVGMRMGVSK 68 (86)
Q Consensus 1 ~VgsI~~~~~~g~~v~KGeElG~F~fGGSTvVllfe~~~i~~~~~l~~~~~~~~et~V~~G~~ig~~~ 68 (86)
|||||.++.+.|..|+||||+|||.|||||||++||++.+.||+||+.|+.+.+||.|+||+.||...
T Consensus 892 MVGSi~lt~kEgd~V~~gdELGYFkFGGSTVI~vfe~n~~~fDeDLl~NS~~~iETLVkvGm~iGv~i 959 (975)
T KOG2419|consen 892 MVGSILLTRKEGDHVKKGDELGYFKFGGSTVICVFEKNNIMFDEDLLKNSSRSIETLVKVGMQIGVSI 959 (975)
T ss_pred eeeeEEEEeecCcccccccccceEeeCCeeEEEEEcCCcccccHHHHhcchhhHHHHHHHHHhhceec
Confidence 89999999999999999999999999999999999999999999999999999999999999999644
No 4
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.67 E-value=3.8e-17 Score=134.49 Aligned_cols=50 Identities=30% Similarity=0.515 Sum_probs=46.8
Q ss_pred CCeeeccceeeeeecCCceEEEEEeCCceeechhhhhcCcccceeeEeccccccccc
Q 034705 12 GDFVKKGDEFGYFSFGGSTVICVFEKDAIQIDKDLLQNSARALETLVSVGMRMGVSK 68 (86)
Q Consensus 12 g~~v~KGeElG~F~fGGSTvVllfe~~~i~~~~~l~~~~~~~~et~V~~G~~ig~~~ 68 (86)
+..++||||||||+| ||||||||++++++|+.++..+++ |||||.||+..
T Consensus 559 ~~~~~kGeE~G~F~~-GSTvvllf~~~~~~~~~~l~~~~~------v~~Gq~lg~~~ 608 (610)
T PRK09629 559 PIHLEKGAEMGRFKL-GSTAIVLFGPNQVKWAEQLTAGSK------VQMGQALAVPA 608 (610)
T ss_pred CceEeecceeeEecc-CCeEEEEecCCceecCccccCCCE------EeechhhCCcc
Confidence 678999999999999 699999999999999999999997 99999999765
No 5
>PRK03140 phosphatidylserine decarboxylase; Provisional
Probab=99.65 E-value=1.1e-16 Score=120.16 Aligned_cols=59 Identities=44% Similarity=0.755 Sum_probs=53.7
Q ss_pred CcccEEEEeeCCCeeeccceeeeeecCCceEEEEEeCCceeechhhhhcCcccceeeEecccccccc
Q 034705 1 MVGSITFLKNTGDFVKKGDEFGYFSFGGSTVICVFEKDAIQIDKDLLQNSARALETLVSVGMRMGVS 67 (86)
Q Consensus 1 ~VgsI~~~~~~g~~v~KGeElG~F~fGGSTvVllfe~~~i~~~~~l~~~~~~~~et~V~~G~~ig~~ 67 (86)
+||+|+++ .+|..++||||+|+|+|| |||||+||++.++|+.++.++++ |++||.||..
T Consensus 200 ~Vg~I~~~-~~g~~v~kGee~G~F~fG-Stvvllf~~~~~~~~~~~~~g~~------V~~Ge~ig~~ 258 (259)
T PRK03140 200 FVNSIELT-HERDTVQKGEEMAYFSFG-STVVLLFEKDMIEPDQELKSGQE------VRLGEKIGTR 258 (259)
T ss_pred EeeEEEEe-cCCCEEecCcEeeeeccC-CeEEEEEeCCccccchhhcCCCE------EEcChhhccc
Confidence 58999987 568999999999999995 99999999999999999999887 9999999864
No 6
>PRK00044 psd phosphatidylserine decarboxylase; Reviewed
Probab=99.64 E-value=1.4e-16 Score=121.05 Aligned_cols=51 Identities=33% Similarity=0.511 Sum_probs=46.2
Q ss_pred CCeeeccceeeeeecCCceEEEEEeCCceeechhhhhcCcccceeeEeccccccccch
Q 034705 12 GDFVKKGDEFGYFSFGGSTVICVFEKDAIQIDKDLLQNSARALETLVSVGMRMGVSKK 69 (86)
Q Consensus 12 g~~v~KGeElG~F~fGGSTvVllfe~~~i~~~~~l~~~~~~~~et~V~~G~~ig~~~~ 69 (86)
+..++||||+|+|+| ||||||+||++.++|+.++..+++ |++||.||...+
T Consensus 237 ~~~v~kGee~G~F~f-GStVvllfe~~~~~~~~~v~~g~k------V~~Ge~ig~~~~ 287 (288)
T PRK00044 237 AITLKKGAEMGRFKL-GSTVINLFPPGKVQLAEQLQAGSV------VRMGQPLAHITE 287 (288)
T ss_pred CCeEccccEeecccC-CCeEEEEEeCCCceeccccCCCCE------EEcChhhcCccC
Confidence 679999999999999 799999999998889888888887 999999997653
No 7
>PLN02938 phosphatidylserine decarboxylase
Probab=99.64 E-value=1.5e-16 Score=127.46 Aligned_cols=50 Identities=34% Similarity=0.483 Sum_probs=43.9
Q ss_pred CCeeeccceeeeeecCCceEEEEEeCCc-------------eeechhhhhcCcccceeeEeccccccccc
Q 034705 12 GDFVKKGDEFGYFSFGGSTVICVFEKDA-------------IQIDKDLLQNSARALETLVSVGMRMGVSK 68 (86)
Q Consensus 12 g~~v~KGeElG~F~fGGSTvVllfe~~~-------------i~~~~~l~~~~~~~~et~V~~G~~ig~~~ 68 (86)
|..++||||||+|+| ||||||+||++. ..|..++..+++ |||||.||+..
T Consensus 364 g~~l~KGeE~G~F~l-GSTVVLvFEap~~~~~~~~~~~~~~~~~~~~l~~G~~------Vk~Gq~LG~~~ 426 (428)
T PLN02938 364 GLCLKKGDEVAVFNL-GSTVVLVFEAPVEVEPLFKVLDQSSSDFRFCVRKGDR------IRVGQALGRWM 426 (428)
T ss_pred CceeccccEeeeecC-CCeEEEEEeCCcccccccccccccccCccccccCCCE------EEcchhhcccc
Confidence 678999999999999 799999999985 457767888887 99999999754
No 8
>PTZ00403 phosphatidylserine decarboxylase; Provisional
Probab=99.63 E-value=2e-16 Score=124.11 Aligned_cols=51 Identities=33% Similarity=0.550 Sum_probs=44.3
Q ss_pred CCeeeccceeeeeecCCceEEEEEeCCceeechhhhhcCcccceeeEeccccccccchh
Q 034705 12 GDFVKKGDEFGYFSFGGSTVICVFEKDAIQIDKDLLQNSARALETLVSVGMRMGVSKKE 70 (86)
Q Consensus 12 g~~v~KGeElG~F~fGGSTvVllfe~~~i~~~~~l~~~~~~~~et~V~~G~~ig~~~~~ 70 (86)
+..++||||+|+|+| |||||||||++. +|+.++..+++ |+|||.||...+.
T Consensus 291 ~~~v~KGeElG~F~~-GSTVVllFe~~~-~~~~~l~~g~~------Vr~Gq~lg~~~~~ 341 (353)
T PTZ00403 291 YKSVEVGDEVGEFRM-GSSIVVIFENKK-NFSWNVKPNQT------VSVGQRLGGVGEP 341 (353)
T ss_pred CCcccccceeeEecc-CCeEEEEEeCCC-cCCcccCCCCE------EEeeeeccccCCC
Confidence 468999999999999 899999999996 66666888887 9999999986643
No 9
>TIGR00163 PS_decarb phosphatidylserine decarboxylase precursor. Phosphatidylserine decarboxylase is synthesized as a single chain precursor. Generation of the pyruvoyl active site from a Ser is coupled to cleavage of a Gly-Ser bond between the larger (beta) and smaller (alpha chains). It is an integral membrane protein. A closely related family, possibly also active as phosphatidylserine decarboxylase, falls under model TIGR00164.
Probab=99.62 E-value=3.9e-16 Score=115.80 Aligned_cols=48 Identities=40% Similarity=0.623 Sum_probs=45.0
Q ss_pred CCeeeccceeeeeecCCceEEEEEeCCceeechhhhhcCcccceeeEeccccccc
Q 034705 12 GDFVKKGDEFGYFSFGGSTVICVFEKDAIQIDKDLLQNSARALETLVSVGMRMGV 66 (86)
Q Consensus 12 g~~v~KGeElG~F~fGGSTvVllfe~~~i~~~~~l~~~~~~~~et~V~~G~~ig~ 66 (86)
|..++||||+|+|+| ||||||+||++.+.|+.++..+++ |++||.||.
T Consensus 189 g~~v~kGee~G~F~f-GStVvllf~~~~~~~~~~v~~g~k------V~~Ge~lg~ 236 (238)
T TIGR00163 189 PVKLLKGEEMGYFEL-GSTVILLFEADAFQLSAHLAVGQE------VKIGELLAY 236 (238)
T ss_pred CceeccccEeeeEcC-CCeEEEEEeCCCcccChhhccCCE------EEcChhhcc
Confidence 789999999999999 799999999998888888999988 999999985
No 10
>PRK03934 phosphatidylserine decarboxylase; Provisional
Probab=99.59 E-value=1.3e-15 Score=114.73 Aligned_cols=57 Identities=30% Similarity=0.520 Sum_probs=48.0
Q ss_pred CcccEEEEee-----------------CCCeeeccceeeeeecCCceEEEEEeCCceeechhhhhcCcccceeeEecccc
Q 034705 1 MVGSITFLKN-----------------TGDFVKKGDEFGYFSFGGSTVICVFEKDAIQIDKDLLQNSARALETLVSVGMR 63 (86)
Q Consensus 1 ~VgsI~~~~~-----------------~g~~v~KGeElG~F~fGGSTvVllfe~~~i~~~~~l~~~~~~~~et~V~~G~~ 63 (86)
|||||+++.. ++..++||||+|+|+| ||||||+||+++++|+ +..+++ |++||.
T Consensus 191 ~Vg~I~~~~~~~~~~~~~~r~i~~~~~~~~~v~kGee~G~F~f-GSTVvllf~~~~~~~~--v~~g~~------V~~Ge~ 261 (265)
T PRK03934 191 NVGKMRFNFDERIQTNAKARFIQTYEYENLKLKKGEELGNFEM-GSTIVLFSQKGSLEFN--LKAGKS------VKFGES 261 (265)
T ss_pred EeeEEEEEeccccccCcccCceeeeccCCceEccccEeeEEcc-CCEEEEEEeCCcceEc--cCCCCE------EEcchh
Confidence 5899986532 3789999999999999 7999999999988876 445665 999999
Q ss_pred ccc
Q 034705 64 MGV 66 (86)
Q Consensus 64 ig~ 66 (86)
||.
T Consensus 262 ig~ 264 (265)
T PRK03934 262 IGE 264 (265)
T ss_pred hcc
Confidence 985
No 11
>PF02666 PS_Dcarbxylase: Phosphatidylserine decarboxylase; InterPro: IPR003817 Phosphatidylserine decarboxylase plays a pivotal role in the synthesis of phospholipid by the mitochondria. The substrate phosphatidylserine is synthesized extramitochondrially and must be translocated to the mitochondria prior to decarboxylation []. Phosphatidylserine decarboxylases 4.1.1.65 from EC is responsible for conversion of phosphatidylserine to phosphatidylethanolamine and plays a central role in the biosynthesis of aminophospholipids [].; GO: 0004609 phosphatidylserine decarboxylase activity, 0008654 phospholipid biosynthetic process
Probab=99.58 E-value=2.2e-15 Score=108.57 Aligned_cols=57 Identities=46% Similarity=0.765 Sum_probs=49.2
Q ss_pred CcccEEEEe--eCCCeeeccceeeeeecCCceEEEEEeCCce-eechhhhhcCcccceeeEeccccccc
Q 034705 1 MVGSITFLK--NTGDFVKKGDEFGYFSFGGSTVICVFEKDAI-QIDKDLLQNSARALETLVSVGMRMGV 66 (86)
Q Consensus 1 ~VgsI~~~~--~~g~~v~KGeElG~F~fGGSTvVllfe~~~i-~~~~~l~~~~~~~~et~V~~G~~ig~ 66 (86)
+||+|++.+ ++|..++||||+|+|+| ||||+|+||++.+ ++ .+..+++ |++||.|+.
T Consensus 143 ~v~~I~~~~~~~~g~~v~kG~e~G~f~f-GStvvl~f~~~~~~~~--~v~~g~~------V~~Ge~i~~ 202 (202)
T PF02666_consen 143 LVGSIVLTVDPKEGDEVKKGEELGYFRF-GSTVVLLFPKDKIFEW--SVKPGQK------VRAGETIGY 202 (202)
T ss_pred eeceeEEEecccCCCEEecCcEeCEEec-CCeEEEEEeCCCcccc--ccCCCCE------EEeeeEEeC
Confidence 589999998 68999999999999999 8999999999974 43 3556666 999999974
No 12
>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein. It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.
Probab=99.31 E-value=2.3e-12 Score=92.78 Aligned_cols=54 Identities=22% Similarity=0.334 Sum_probs=45.4
Q ss_pred cccEEEEeeCCCeeeccceeeeeecCCceEEEEEeCCceeechhhhhcCcccceeeEecccccc
Q 034705 2 VGSITFLKNTGDFVKKGDEFGYFSFGGSTVICVFEKDAIQIDKDLLQNSARALETLVSVGMRMG 65 (86)
Q Consensus 2 VgsI~~~~~~g~~v~KGeElG~F~fGGSTvVllfe~~~i~~~~~l~~~~~~~~et~V~~G~~ig 65 (86)
+++|+...++|..++||||+|+|+| ||||+|+||++ .++ ++..+++ |++||.|.
T Consensus 129 ~~~i~~~~~~g~~v~kGeeiG~f~f-GStv~ll~p~~-~~~--~v~~G~~------V~~G~tli 182 (189)
T TIGR00164 129 ARRIVCYVKEGEKVSRGQRIGMIRF-GSRVDLYLPEN-AQA--QVKVGEK------VTAGETVL 182 (189)
T ss_pred ccEEEEecCCCCEEecCcEEEEEec-CCeEEEEEcCC-Ccc--ccCCCCE------EEeceEEE
Confidence 4677777788999999999999999 69999999987 344 4778887 99999663
No 13
>PRK05305 phosphatidylserine decarboxylase; Provisional
Probab=99.16 E-value=3.6e-11 Score=87.54 Aligned_cols=53 Identities=25% Similarity=0.347 Sum_probs=44.3
Q ss_pred cccEEEEeeCCCeeeccceeeeeecCCceEEEEEeCCceeechhhhhcCcccceeeEeccccc
Q 034705 2 VGSITFLKNTGDFVKKGDEFGYFSFGGSTVICVFEKDAIQIDKDLLQNSARALETLVSVGMRM 64 (86)
Q Consensus 2 VgsI~~~~~~g~~v~KGeElG~F~fGGSTvVllfe~~~i~~~~~l~~~~~~~~et~V~~G~~i 64 (86)
+++|+...++|..++||||+|+|+| ||||+|+||++ .++ .+..+++ |++||.+
T Consensus 149 ~r~I~~~~~~g~~v~kGe~~G~f~f-GStV~l~~p~~-~~~--~V~~G~k------V~~Getv 201 (206)
T PRK05305 149 ARRIVCYVKEGDEVERGERFGLIRF-GSRVDVYLPLG-TEP--LVSVGQK------VVAGETV 201 (206)
T ss_pred ccEEEEeCCCCCEEccCcEEeEEec-CCeEEEEEcCC-Ccc--cccCCCE------EEcccEE
Confidence 5677776788999999999999999 69999999998 344 3677887 9999854
No 14
>COG0688 Psd Phosphatidylserine decarboxylase [Lipid metabolism]
Probab=99.09 E-value=6.1e-11 Score=88.92 Aligned_cols=58 Identities=29% Similarity=0.550 Sum_probs=53.6
Q ss_pred CcccEEEEeeCCCeeeccceeeeeecC--CceEEEEEeCCceeechhhhhcCcccceeeEeccccc
Q 034705 1 MVGSITFLKNTGDFVKKGDEFGYFSFG--GSTVICVFEKDAIQIDKDLLQNSARALETLVSVGMRM 64 (86)
Q Consensus 1 ~VgsI~~~~~~g~~v~KGeElG~F~fG--GSTvVllfe~~~i~~~~~l~~~~~~~~et~V~~G~~i 64 (86)
+|+||+...+.|..++|||++|+|+|| |||+|++|+++.+.+++++..++. |++|+.+
T Consensus 180 ~v~~Iv~~~~~~~~v~~G~~~G~~~fGs~gstvip~~~~~~v~~~~~v~~g~t------v~~~~~~ 239 (239)
T COG0688 180 VARRIVCYVKEGDTVKKGERIGGIRFGSRGSTVLPLFAEPRVAVGERVVAGET------VLAGEKL 239 (239)
T ss_pred eeeEEEEEecCCcEEEhhhhhhhhhhCCcccEEEecCCCceeeeccccccCce------EEeeecC
Confidence 589999999999999999999999998 899999999999999999999988 8888753
No 15
>KOG2420 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=98.88 E-value=2e-09 Score=85.29 Aligned_cols=45 Identities=33% Similarity=0.547 Sum_probs=39.4
Q ss_pred CCCeeeccceeeeeecCCceEEEEEeCCc-eeechhhhhcCcccceeeEeccccc
Q 034705 11 TGDFVKKGDEFGYFSFGGSTVICVFEKDA-IQIDKDLLQNSARALETLVSVGMRM 64 (86)
Q Consensus 11 ~g~~v~KGeElG~F~fGGSTvVllfe~~~-i~~~~~l~~~~~~~~et~V~~G~~i 64 (86)
.|..+-|||++|.|++ ||||||+||.++ ++|| +..+++ |||||+|
T Consensus 337 eg~p~~kge~~g~f~l-GStivl~feap~~fkf~--~~~gq~------vr~ge~l 382 (382)
T KOG2420|consen 337 EGMPYVKGERVGEFRL-GSTIVLVFEAPKDFKFD--IKAGQK------VRVGESL 382 (382)
T ss_pred CCceeccccccccEec-CcEEEEEEeCCCcceee--eecCce------eeccccC
Confidence 4568999999999999 799999999875 7775 888998 9999986
No 16
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=89.33 E-value=1.1 Score=25.34 Aligned_cols=24 Identities=25% Similarity=0.486 Sum_probs=19.6
Q ss_pred ccE-EEEeeCCCeeeccceeeeeec
Q 034705 3 GSI-TFLKNTGDFVKKGDEFGYFSF 26 (86)
Q Consensus 3 gsI-~~~~~~g~~v~KGeElG~F~f 26 (86)
|.+ .+.+++|..+++||.++.-+-
T Consensus 8 G~v~~~~v~~G~~v~~g~~l~~i~~ 32 (67)
T cd06850 8 GTVVKVLVKEGDKVEAGQPLAVLEA 32 (67)
T ss_pred EEEEEEEeCCCCEECCCCEEEEEEc
Confidence 445 367899999999999998764
No 17
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=85.11 E-value=1.9 Score=25.64 Aligned_cols=53 Identities=17% Similarity=0.215 Sum_probs=33.3
Q ss_pred EEEeeCCCeeeccceeeeeecCCceEEEEEeCC-ce-eechhhhhcCcccceeeEeccccccc
Q 034705 6 TFLKNTGDFVKKGDEFGYFSFGGSTVICVFEKD-AI-QIDKDLLQNSARALETLVSVGMRMGV 66 (86)
Q Consensus 6 ~~~~~~g~~v~KGeElG~F~fGGSTvVllfe~~-~i-~~~~~l~~~~~~~~et~V~~G~~ig~ 66 (86)
.+.++.|.++++||.++.-+-+=.++-+..+-. .+ ++. ...++. |..|+.|+.
T Consensus 14 ~~~v~~G~~V~~g~~l~~ve~~k~~~~v~s~~~G~v~~~~--~~~G~~------V~~g~~l~~ 68 (70)
T PRK08225 14 KIVVKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKIN--VQEGDF------VNEGDVLLE 68 (70)
T ss_pred EEEeCCCCEECCCCEEEEEEcCCCcceEeCCCCEEEEEEE--ecCCCE------ECCCCEEEE
Confidence 345789999999999999777443444444432 22 222 333444 888888765
No 18
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=83.38 E-value=3.3 Score=24.86 Aligned_cols=57 Identities=18% Similarity=0.242 Sum_probs=31.4
Q ss_pred ccE-EEEeeCCCeeeccceeeeeecCCceEEEEEe-CCceeechhhhhcCcccceeeEeccccccc
Q 034705 3 GSI-TFLKNTGDFVKKGDEFGYFSFGGSTVICVFE-KDAIQIDKDLLQNSARALETLVSVGMRMGV 66 (86)
Q Consensus 3 gsI-~~~~~~g~~v~KGeElG~F~fGGSTvVllfe-~~~i~~~~~l~~~~~~~~et~V~~G~~ig~ 66 (86)
|.| .+.++.|..+++||.+..=+=--.++-+..+ ++.+.. -....++. |+.|+.|+.
T Consensus 11 G~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~I~a~~~G~V~~-i~v~~G~~------V~~G~~l~~ 69 (71)
T PRK05889 11 ASVLEVVVNEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSK-VSVSVGDV------IQAGDLIAV 69 (71)
T ss_pred EEEEEEEeCCCCEECCCCEEEEEEeccceeEEeCCCCEEEEE-EEeCCCCE------ECCCCEEEE
Confidence 444 5567899999999999865542222222222 122211 11233443 777877765
No 19
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=78.74 E-value=3.9 Score=24.85 Aligned_cols=53 Identities=23% Similarity=0.216 Sum_probs=33.3
Q ss_pred EEeeCCCeeeccceeeeeecCCceEEEEEeC-CceeechhhhhcCcccceeeEeccccccc
Q 034705 7 FLKNTGDFVKKGDEFGYFSFGGSTVICVFEK-DAIQIDKDLLQNSARALETLVSVGMRMGV 66 (86)
Q Consensus 7 ~~~~~g~~v~KGeElG~F~fGGSTvVllfe~-~~i~~~~~l~~~~~~~~et~V~~G~~ig~ 66 (86)
+.+++|..+++||.+...+=..-.+=+..+. |.+..- ....++. |..|+.|+.
T Consensus 20 ~~v~~G~~V~~G~~l~~iet~K~~~~v~a~~~G~i~~i-~v~~G~~------V~~G~~l~~ 73 (74)
T PF00364_consen 20 WLVEEGDKVKKGDPLAEIETMKMEMEVEAPVSGIIKEI-LVEEGDT------VEVGQVLAI 73 (74)
T ss_dssp ESSSTTEEESTTSEEEEEESSSEEEEEEBSSSEEEEEE-SSTTTEE------EETTSEEEE
T ss_pred EEECCCCEEEcCceEEEEEcCccceEEECCCCEEEEEE-EECCCCE------ECCCCEEEE
Confidence 5579999999999999998844433333332 222211 1233554 899988864
No 20
>PRK07051 hypothetical protein; Validated
Probab=71.30 E-value=6.9 Score=24.10 Aligned_cols=51 Identities=18% Similarity=0.177 Sum_probs=32.1
Q ss_pred eeCCCeeeccceeeeeecCCceEEEEEe-CCce-eechhhhhcCcccceeeEecccccccc
Q 034705 9 KNTGDFVKKGDEFGYFSFGGSTVICVFE-KDAI-QIDKDLLQNSARALETLVSVGMRMGVS 67 (86)
Q Consensus 9 ~~~g~~v~KGeElG~F~fGGSTvVllfe-~~~i-~~~~~l~~~~~~~~et~V~~G~~ig~~ 67 (86)
++.|..+++||.++..+=-...+-+-.+ ++.+ ++. ...++. |+.|+.|+..
T Consensus 26 v~~Gd~V~~g~~l~~ve~~k~~~~i~a~~~G~v~~i~--~~~G~~------V~~G~~l~~i 78 (80)
T PRK07051 26 VEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFL--VEDGEP------VEAGQVLARI 78 (80)
T ss_pred cCCCCEECCCCEEEEEEEcceEEEEeCCCCEEEEEEE--cCCcCE------ECCCCEEEEE
Confidence 5789999999999998873222223222 2232 221 334554 9999998865
No 21
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=66.85 E-value=7.5 Score=22.08 Aligned_cols=17 Identities=35% Similarity=0.425 Sum_probs=14.0
Q ss_pred EeeCCCeeeccceeeee
Q 034705 8 LKNTGDFVKKGDEFGYF 24 (86)
Q Consensus 8 ~~~~g~~v~KGeElG~F 24 (86)
.++.|..|+|||-|-.+
T Consensus 17 ~V~~G~~VkkGd~L~~l 33 (50)
T PF13533_consen 17 YVKEGQQVKKGDVLLVL 33 (50)
T ss_pred EecCCCEEcCCCEEEEE
Confidence 46899999999987554
No 22
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=63.88 E-value=12 Score=26.21 Aligned_cols=26 Identities=35% Similarity=0.397 Sum_probs=19.3
Q ss_pred CcccEEE--------EeeCCCeeeccceeeeeec
Q 034705 1 MVGSITF--------LKNTGDFVKKGDEFGYFSF 26 (86)
Q Consensus 1 ~VgsI~~--------~~~~g~~v~KGeElG~F~f 26 (86)
|||.+.- .+++|..|++||.++.=+=
T Consensus 87 ~~G~~~~~~~P~~~~~v~~Gd~V~~Gq~l~iiEa 120 (156)
T TIGR00531 87 MVGTFYRAPSPDAKPFVEVGDKVKKGQIVCIVEA 120 (156)
T ss_pred CCEEEEecCCCCCCccccCCCEeCCCCEEEEEEe
Confidence 5677764 3689999999988776654
No 23
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=58.11 E-value=28 Score=18.74 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=18.4
Q ss_pred EEeeCCCeeeccceeeeeecCCce
Q 034705 7 FLKNTGDFVKKGDEFGYFSFGGST 30 (86)
Q Consensus 7 ~~~~~g~~v~KGeElG~F~fGGST 30 (86)
+..+.|..+.+|+.+...+...++
T Consensus 20 ~~~~~g~~v~~~~~l~~~~~~~~~ 43 (74)
T cd06849 20 WLVKEGDSVEEGDVLAEVETDKAT 43 (74)
T ss_pred EEECCCCEEcCCCEEEEEEeCCeE
Confidence 446788999999999988774333
No 24
>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....
Probab=54.17 E-value=8.9 Score=23.71 Aligned_cols=17 Identities=35% Similarity=0.495 Sum_probs=13.5
Q ss_pred eeCCCeeeccceeeeee
Q 034705 9 KNTGDFVKKGDEFGYFS 25 (86)
Q Consensus 9 ~~~g~~v~KGeElG~F~ 25 (86)
++.|.+|++||.+|.--
T Consensus 57 v~~G~~V~~G~~IG~~g 73 (96)
T PF01551_consen 57 VKVGDRVKAGQVIGTVG 73 (96)
T ss_dssp S-TTSEE-TTCEEEEEB
T ss_pred ceecccccCCCEEEecC
Confidence 57999999999999876
No 25
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=53.15 E-value=26 Score=27.38 Aligned_cols=53 Identities=19% Similarity=0.021 Sum_probs=32.7
Q ss_pred EeeCCCeeeccceeeeeecCCceEEEEEeC-CceeechhhhhcCcccceeeEecccccccc
Q 034705 8 LKNTGDFVKKGDEFGYFSFGGSTVICVFEK-DAIQIDKDLLQNSARALETLVSVGMRMGVS 67 (86)
Q Consensus 8 ~~~~g~~v~KGeElG~F~fGGSTvVllfe~-~~i~~~~~l~~~~~~~~et~V~~G~~ig~~ 67 (86)
.++.|..|++||.++.=+=.-..+-+-.+. |.+..- ....+.. |..|+.|+..
T Consensus 219 ~VkvGDsVkkGQvLavIEAMKmeieV~AP~sGtV~eI-lVkeGD~------V~vGqpL~~I 272 (274)
T PLN02983 219 FVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIVEI-LAEDGKP------VSVDTPLFVI 272 (274)
T ss_pred eeCCCCEecCCCEEEEEEeeceeeEEecCCCeEEEEE-ecCCCCE------eCCCCEEEEe
Confidence 578999999999998887654444444332 232210 1223443 8888888754
No 26
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=52.78 E-value=23 Score=24.70 Aligned_cols=26 Identities=31% Similarity=0.455 Sum_probs=19.0
Q ss_pred CcccEEE--------EeeCCCeeeccceeeeeec
Q 034705 1 MVGSITF--------LKNTGDFVKKGDEFGYFSF 26 (86)
Q Consensus 1 ~VgsI~~--------~~~~g~~v~KGeElG~F~f 26 (86)
|||.+.. .++.|..+++||-++.=+=
T Consensus 86 ~~G~~~~~~sP~~~~~v~~Gd~V~~Gq~l~~iEa 119 (155)
T PRK06302 86 MVGTFYRAPSPDAPPFVEVGDTVKEGQTLCIIEA 119 (155)
T ss_pred cCEEEEecCCCCCCcccCCCCEeCCCCEEEEEEe
Confidence 5666654 3688999999988876665
No 27
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=48.13 E-value=18 Score=24.63 Aligned_cols=19 Identities=37% Similarity=0.466 Sum_probs=16.9
Q ss_pred EeeCCCeeeccceeeeeec
Q 034705 8 LKNTGDFVKKGDEFGYFSF 26 (86)
Q Consensus 8 ~~~~g~~v~KGeElG~F~f 26 (86)
.++.|.++++||.+..|.+
T Consensus 85 ~v~~Gd~V~~G~~l~~~D~ 103 (121)
T TIGR00830 85 HVEEGQRVKKGDPLLEFDL 103 (121)
T ss_pred EecCCCEEcCCCEEEEEcH
Confidence 4689999999999999985
No 28
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=46.53 E-value=25 Score=24.11 Aligned_cols=25 Identities=32% Similarity=0.542 Sum_probs=18.4
Q ss_pred CcccEEE-EeeCCCeeeccceeeeee
Q 034705 1 MVGSITF-LKNTGDFVKKGDEFGYFS 25 (86)
Q Consensus 1 ~VgsI~~-~~~~g~~v~KGeElG~F~ 25 (86)
|+|.+.- .++.|++|++||-+..-+
T Consensus 77 m~Gtv~~~~V~vGd~V~~Gq~l~IiE 102 (140)
T COG0511 77 MVGTVYKPFVEVGDTVKAGQTLAIIE 102 (140)
T ss_pred cceEEEEEeeccCCEEcCCCEEEEEE
Confidence 5777744 579999999998665443
No 29
>PRK06748 hypothetical protein; Validated
Probab=43.69 E-value=24 Score=22.62 Aligned_cols=60 Identities=8% Similarity=0.140 Sum_probs=33.7
Q ss_pred ccE-EEEeeCCCeeeccceeeeeec-CCceEEEEEe-CCceeechhhhhcCcccceeeEeccccccccch
Q 034705 3 GSI-TFLKNTGDFVKKGDEFGYFSF-GGSTVICVFE-KDAIQIDKDLLQNSARALETLVSVGMRMGVSKK 69 (86)
Q Consensus 3 gsI-~~~~~~g~~v~KGeElG~F~f-GGSTvVllfe-~~~i~~~~~l~~~~~~~~et~V~~G~~ig~~~~ 69 (86)
|.| .|.++.|..+++||.+=--+- =--+.-+-.+ .|.+.-- ....+.. |..|+.|+....
T Consensus 13 G~I~~w~vk~GD~V~~gd~l~~IETMdK~~~ei~Ap~~G~v~~i-~v~~Gd~------V~vG~~la~I~~ 75 (83)
T PRK06748 13 GKVEKLFVRESSYVYEWEKLALIETIDKQKVEIKVGISGYIESL-EVVEGQA------IADQKLLITVRD 75 (83)
T ss_pred EEEEEEEeCCCCEECCCCEEEEEEcCCCceEEEecCCCEEEEEE-EeCCCCE------ECCCCEEEEEEC
Confidence 445 677899999999998744432 1112222222 1222110 1234444 999999988643
No 30
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=41.58 E-value=52 Score=24.77 Aligned_cols=20 Identities=35% Similarity=0.408 Sum_probs=16.6
Q ss_pred EEEeeCCCeeeccceeeeee
Q 034705 6 TFLKNTGDFVKKGDEFGYFS 25 (86)
Q Consensus 6 ~~~~~~g~~v~KGeElG~F~ 25 (86)
+..+++|..|+|||.+|+-.
T Consensus 231 ~~~~~~Gd~V~~G~~ig~i~ 250 (287)
T cd06251 231 RSLVKLGDKVKKGQLLATIT 250 (287)
T ss_pred EEecCCCCEECCCCEEEEEE
Confidence 44568999999999999873
No 31
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=41.25 E-value=72 Score=18.47 Aligned_cols=21 Identities=43% Similarity=0.540 Sum_probs=17.7
Q ss_pred EEeeCCCeeeccceeeeeecC
Q 034705 7 FLKNTGDFVKKGDEFGYFSFG 27 (86)
Q Consensus 7 ~~~~~g~~v~KGeElG~F~fG 27 (86)
+..+.|..+++||.++.-+=+
T Consensus 19 ~~v~~G~~v~~g~~l~~ie~~ 39 (73)
T cd06663 19 WLKKVGDKVKKGDVLAEIEAM 39 (73)
T ss_pred EEcCCcCEECCCCEEEEEEeC
Confidence 456789999999999998773
No 32
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=41.19 E-value=56 Score=24.00 Aligned_cols=56 Identities=21% Similarity=0.223 Sum_probs=31.7
Q ss_pred EEEeeCCCeeeccceeeeeecCCceE-EEEEeCCceeechhhhhcCcccceeeEeccccccccc
Q 034705 6 TFLKNTGDFVKKGDEFGYFSFGGSTV-ICVFEKDAIQIDKDLLQNSARALETLVSVGMRMGVSK 68 (86)
Q Consensus 6 ~~~~~~g~~v~KGeElG~F~fGGSTv-Vllfe~~~i~~~~~l~~~~~~~~et~V~~G~~ig~~~ 68 (86)
.+.+++|..|++||.+..=+=-=-++ |---..|.+.-- ....+.. |..|+.|+...
T Consensus 21 ~~~~~~g~~v~~~~~~~~~e~~k~~~~~~a~~~g~~~~~-~~~~g~~------v~~g~~l~~i~ 77 (371)
T PRK14875 21 GWLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQ-VAQEGET------LPVGALLAVVA 77 (371)
T ss_pred EEEcCCCCEeCCCCEEEEEEecceeEEEecCCCeEEEEE-EcCCCCE------eCCCCEEEEEe
Confidence 45678999999999998754211222 111112332210 1223444 88999998764
No 33
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=40.92 E-value=29 Score=25.29 Aligned_cols=23 Identities=26% Similarity=0.341 Sum_probs=14.6
Q ss_pred cEEEEeeCCCeeeccceeeeeec
Q 034705 4 SITFLKNTGDFVKKGDEFGYFSF 26 (86)
Q Consensus 4 sI~~~~~~g~~v~KGeElG~F~f 26 (86)
.|.+.+++|.+|+|||.|..+.-
T Consensus 31 ~v~~~v~~G~~V~kG~~L~~ld~ 53 (328)
T PF12700_consen 31 RVSVNVKEGDKVKKGQVLAELDS 53 (328)
T ss_dssp EEEE-S-TTSEEETT-EEEEEE-
T ss_pred EEEEEeCCcCEECCCCEEEEEEC
Confidence 34455788999999998877765
No 34
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=40.34 E-value=30 Score=21.48 Aligned_cols=22 Identities=36% Similarity=0.487 Sum_probs=17.1
Q ss_pred EEEEeeCCCeeeccceeeeeec
Q 034705 5 ITFLKNTGDFVKKGDEFGYFSF 26 (86)
Q Consensus 5 I~~~~~~g~~v~KGeElG~F~f 26 (86)
|.+..+.|..|+|||-+-....
T Consensus 34 i~l~~k~Gd~V~~Gd~l~~i~~ 55 (75)
T PF07831_consen 34 IELHKKVGDRVEKGDPLATIYA 55 (75)
T ss_dssp EEESS-TTSEEBTTSEEEEEEE
T ss_pred eEecCcCcCEECCCCeEEEEEc
Confidence 6677899999999998876655
No 35
>cd06903 lectin_EMP46_EMP47 EMP46 and EMP47 type 1 transmembrane proteins, N-terminal lectin domain. EMP46 and EMP47, N-terminal carbohydrate recognition domain. EMP46 and EMP47 are fungal type-I transmembrane proteins that cycle between the endoplasmic reticulum and the golgi apparatus and are thought to function as cargo receptors that transport newly synthesized glycoproteins. EMP47 is a receptor for EMP46 responsible for the selective transport of EMP46 by forming hetero-oligomerization between the two proteins. EMP46 and EMP47 have an N-terminal lectin-like carbohydrate recognition domain (represented by this alignment model) as well as a C-terminal transmembrane domain. EMP46 and EMP47 are 45% sequence-identical to one another and have sequence homology to a class of intracellular lectins defined by ERGIC-53 and VIP36. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat s
Probab=40.07 E-value=21 Score=26.30 Aligned_cols=30 Identities=10% Similarity=0.112 Sum_probs=21.6
Q ss_pred Ceee-ccceeeeeecCCceEEEEEeCCceeechh
Q 034705 13 DFVK-KGDEFGYFSFGGSTVICVFEKDAIQIDKD 45 (86)
Q Consensus 13 ~~v~-KGeElG~F~fGGSTvVllfe~~~i~~~~~ 45 (86)
.++. .+.+++++.++|+|+|. ++.|.+-++
T Consensus 11 ~~~~~~~~~i~~W~~~G~t~v~---~~~IrLTp~ 41 (215)
T cd06903 11 LKISPNGKLIPNWQTSGNPKLE---SGRIILTPP 41 (215)
T ss_pred hccccCCCCCCCeEEcCcEEee---CCeEEECCC
Confidence 3444 37889999999999987 555666554
No 36
>cd06902 lectin_ERGIC-53_ERGL ERGIC-53 and ERGL type 1 transmembrane proteins, N-terminal lectin domain. ERGIC-53 and ERGL, N-terminal carbohydrate recognition domain. ERGIC-53 and ERGL are eukaryotic mannose-binding type 1 transmembrane proteins of the early secretory pathway that transport newly synthesized glycoproteins from the endoplasmic reticulum (ER) to the ER-Golgi intermediate compartment (ERGIC). ERGIC-53 and ERGL have an N-terminal lectin-like carbohydrate recognition domain (represented by this alignment model) as well as a C-terminal transmembrane domain. ERGIC-53 functions as a 'cargo receptor' to facilitate the export of glycoproteins with different characteristics from the ER, while the ERGIC-53-like protein (ERGL) which may act as a regulator of ERGIC-53. In mammals, ERGIC-53 forms a complex with MCFD2 (multi-coagulation factor deficiency 2) which then recruits blood coagulation factors V and VIII. Mutations in either MCFD2 or ERGIC-53 cause a mild form of inherite
Probab=39.66 E-value=24 Score=26.06 Aligned_cols=32 Identities=13% Similarity=0.403 Sum_probs=23.3
Q ss_pred eCCCeeeccceeeeeecCCceEEEEEeCCceeech
Q 034705 10 NTGDFVKKGDEFGYFSFGGSTVICVFEKDAIQIDK 44 (86)
Q Consensus 10 ~~g~~v~KGeElG~F~fGGSTvVllfe~~~i~~~~ 44 (86)
.++....-+.+++++.++|+|+|. .+.|.+-+
T Consensus 10 ~~P~l~~~~~~i~~W~~~G~t~~~---~~~IrLTp 41 (225)
T cd06902 10 KGPHLAQKDGTVPFWSHGGDAIAS---LEQVRLTP 41 (225)
T ss_pred cCcccccCCCCCCceEecccEEec---CCEEEECC
Confidence 456666678899999999999863 44555543
No 37
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=38.99 E-value=31 Score=23.57 Aligned_cols=19 Identities=32% Similarity=0.466 Sum_probs=16.8
Q ss_pred EeeCCCeeeccceeeeeec
Q 034705 8 LKNTGDFVKKGDEFGYFSF 26 (86)
Q Consensus 8 ~~~~g~~v~KGeElG~F~f 26 (86)
.++.|..+++||.+..|.+
T Consensus 85 ~vk~Gd~V~~G~~l~~~D~ 103 (124)
T cd00210 85 HVEEGQRVKQGDKLLEFDL 103 (124)
T ss_pred EecCCCEEcCCCEEEEEcH
Confidence 3689999999999999985
No 38
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=37.19 E-value=77 Score=22.28 Aligned_cols=21 Identities=24% Similarity=0.265 Sum_probs=16.6
Q ss_pred EEEeeCCCeeeccceeeeeec
Q 034705 6 TFLKNTGDFVKKGDEFGYFSF 26 (86)
Q Consensus 6 ~~~~~~g~~v~KGeElG~F~f 26 (86)
.+.++.|+.+++||.+..-+=
T Consensus 97 ~~~V~~Gd~V~~Gq~l~~iEa 117 (153)
T PRK05641 97 RILVREGQQVKVGQGLLILEA 117 (153)
T ss_pred EEEeCCCCEEcCCCEEEEEee
Confidence 456799999999998876543
No 39
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=34.69 E-value=72 Score=25.65 Aligned_cols=56 Identities=14% Similarity=0.188 Sum_probs=32.1
Q ss_pred EEEeeCCCeeeccceeeeeecCCceEEEEEe-CCceeechhhhhcCcccceeeEeccccccccc
Q 034705 6 TFLKNTGDFVKKGDEFGYFSFGGSTVICVFE-KDAIQIDKDLLQNSARALETLVSVGMRMGVSK 68 (86)
Q Consensus 6 ~~~~~~g~~v~KGeElG~F~fGGSTvVllfe-~~~i~~~~~l~~~~~~~~et~V~~G~~ig~~~ 68 (86)
.|.+++|..+++||.+.--+-==+++-+--+ .|.+. .-....+.. |++|+.|+...
T Consensus 19 ~w~v~~Gd~V~~g~~l~~vEtdK~~~ei~a~~~G~v~-~i~~~eG~~------v~vG~~l~~i~ 75 (403)
T TIGR01347 19 EWHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQ-EILFKEGDT------VESGQVLAILE 75 (403)
T ss_pred EEEeCCcCEeCCCCEEEEEEEcceeeEEecCCCEEEE-EEEeCCCCE------eCCCCEEEEEe
Confidence 5678899999999988777652222222111 12211 001233444 89999998864
No 40
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=34.45 E-value=70 Score=26.55 Aligned_cols=53 Identities=21% Similarity=0.320 Sum_probs=32.1
Q ss_pred EEEeeCCCeeeccceeeeeecCCceEEEEEeC---Ccee-echhhhhcCcccceeeEeccccccccc
Q 034705 6 TFLKNTGDFVKKGDEFGYFSFGGSTVICVFEK---DAIQ-IDKDLLQNSARALETLVSVGMRMGVSK 68 (86)
Q Consensus 6 ~~~~~~g~~v~KGeElG~F~fGGSTvVllfe~---~~i~-~~~~l~~~~~~~~et~V~~G~~ig~~~ 68 (86)
.|.+++|..|++||.+...+=- -+.+-.+. |.+. +. ..++.. |..|+.|+...
T Consensus 110 ~w~v~~GD~V~~Gq~L~~VEtd--K~~~eI~Ap~~G~v~~il--v~eGd~------V~vG~~L~~I~ 166 (463)
T PLN02226 110 TFLKKPGERVQADEAIAQIETD--KVTIDIASPASGVIQEFL--VKEGDT------VEPGTKVAIIS 166 (463)
T ss_pred EEEeCCCCEecCCCEEEEEEec--ceeeEEecCCCeEEEEEE--eCCCCE------ecCCCEEEEec
Confidence 4678999999999999887652 22222222 2221 11 233444 88999988764
No 41
>PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein [].; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex; PDB: 3KLR_A 2EDG_A 1ONL_B 2KA7_A 1ZKO_A 3TZU_C 3MXU_A 3A8I_F 3A8J_E 3A7A_B ....
Probab=33.81 E-value=1.3e+02 Score=20.01 Aligned_cols=45 Identities=24% Similarity=0.556 Sum_probs=25.0
Q ss_pred cccEEEE--eeCCCeeeccceeeeeecCCceEEEEEeC--Cc-eeechhhh
Q 034705 2 VGSITFL--KNTGDFVKKGDEFGYFSFGGSTVICVFEK--DA-IQIDKDLL 47 (86)
Q Consensus 2 VgsI~~~--~~~g~~v~KGeElG~F~fGGSTvVllfe~--~~-i~~~~~l~ 47 (86)
.|+|+.- .+.|..+++|+.++..+-+ -++.-|.-| +. +..++++.
T Consensus 30 lG~i~~v~lp~~g~~~~~g~~~~~ies~-k~~~~l~sPvsG~Vv~vN~~l~ 79 (122)
T PF01597_consen 30 LGDIVYVELPKVGTKLKKGDPFASIESS-KAVSDLYSPVSGTVVEVNEELL 79 (122)
T ss_dssp H-SEEEEE-B-TT-EE-TTSEEEEEEES-SEEEEEEESSSEEEEEE-GHHH
T ss_pred CCceEEEEEccCCCEEecCCcEEEEEEC-ceeeecccceEEEEEEEccccc
Confidence 3555443 3678999999999999985 444444443 22 45555544
No 42
>PF04468 PSP1: PSP1 C-terminal conserved region; InterPro: IPR007557 The yeast polymerase suppressor 1 (PSP1) protein partially suppresses mutations in DNA polymerases alpha and delta []. The C-terminal half of PSP1 contains a domain, which is also found in several hypothetical proteins from both eukaryotic and prokaryotic sources: Crithidia fasciculata RBP45 and RBP33, subunits of the cycling sequence binding protein (CSBP) II. RBP45 and RBP33 proteins bind specifically to the cycling sequences present in several mRNAs that accumulate periodically during the cell cycle. RBP45 and RBP33 are phosphoproteins, which are phosphorylated differentially during progression through the cell cycle. Hypothetical proteins with high sequence similarity have been identified in other kinetoplastid organisms []. Bacillus subtilis yaaT protein, which plays a significant role in phosphorelay during initiation of sporulation. It is possible that the yaaT protein is also related to DNA replication. The sequence of the yaaT protein is widely conserved in prokaryotes (bacteria and archaea), but the functions of the protein are unknown []. The actual biological significance of the PSP1 C-terminal domain has not yet been clearly established.
Probab=32.93 E-value=42 Score=21.25 Aligned_cols=39 Identities=18% Similarity=0.421 Sum_probs=25.4
Q ss_pred eeeecCCceEEEEEeCC-ceeechhhhhcCcccceeeEecc
Q 034705 22 GYFSFGGSTVICVFEKD-AIQIDKDLLQNSARALETLVSVG 61 (86)
Q Consensus 22 G~F~fGGSTvVllfe~~-~i~~~~~l~~~~~~~~et~V~~G 61 (86)
-.|.|.||.+++.|-.+ +++|.+ |...-...+.++|-|-
T Consensus 47 ~e~~~D~~k~~fyy~a~~rvDFR~-Lvr~L~~~f~~RIem~ 86 (88)
T PF04468_consen 47 VEYQFDGSKLTFYYTAESRVDFRE-LVRDLAREFKTRIEMR 86 (88)
T ss_pred EEEEcCCCEEEEEEEeCCcCcHHH-HHHHHHHHhCceEEEE
Confidence 36899999999999876 488864 4443333333555543
No 43
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=32.92 E-value=34 Score=26.09 Aligned_cols=51 Identities=31% Similarity=0.395 Sum_probs=30.3
Q ss_pred EeeCCCeeeccceeeeee--cCCceEE--EEEeCCceeechhhhhcCcccceeeEecccccccc
Q 034705 8 LKNTGDFVKKGDEFGYFS--FGGSTVI--CVFEKDAIQIDKDLLQNSARALETLVSVGMRMGVS 67 (86)
Q Consensus 8 ~~~~g~~v~KGeElG~F~--fGGSTvV--llfe~~~i~~~~~l~~~~~~~~et~V~~G~~ig~~ 67 (86)
.+++|.+|+|||.+|+-. |+ .+++ +..+.+-+-|. ..... .|..|+.|++.
T Consensus 243 ~~~~G~~V~~Gq~lg~i~dp~~-g~~~~~v~Ap~dGiv~~--~~~~p------~v~~G~~l~~i 297 (298)
T cd06253 243 AKHLGDIVKRGDVIGEIVDPLE-GEVIEEVIAPCDGILFT--LREYP------LVYEGSLVARI 297 (298)
T ss_pred CcCCCCEECCCCEEEEEeCCCC-CCeeEEEEcCCCeEEEE--eecCC------eecCCceEEEe
Confidence 468999999999999864 54 3322 33333323332 11222 37788877653
No 44
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=32.52 E-value=45 Score=23.96 Aligned_cols=19 Identities=32% Similarity=0.466 Sum_probs=17.0
Q ss_pred EeeCCCeeeccceeeeeec
Q 034705 8 LKNTGDFVKKGDEFGYFSF 26 (86)
Q Consensus 8 ~~~~g~~v~KGeElG~F~f 26 (86)
.++.|.+|++||.+..|.+
T Consensus 107 ~Vk~Gd~Vk~G~~L~~~D~ 125 (169)
T PRK09439 107 IAEEGQRVKVGDPIIEFDL 125 (169)
T ss_pred EecCCCEEeCCCEEEEEcH
Confidence 4689999999999999986
No 45
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=31.52 E-value=42 Score=25.41 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=17.7
Q ss_pred EEeeCCCeeeccceeeee--ecCCc
Q 034705 7 FLKNTGDFVKKGDEFGYF--SFGGS 29 (86)
Q Consensus 7 ~~~~~g~~v~KGeElG~F--~fGGS 29 (86)
..+++|..|+|||.+|+= -||+-
T Consensus 244 ~~~~~G~~V~~Gq~lg~I~dp~g~~ 268 (293)
T cd06255 244 PSVPAGDTIPAGQPLGRVVDLYGAE 268 (293)
T ss_pred EecCCCCEecCCCEEEEEECCCCCc
Confidence 346899999999999974 56433
No 46
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=31.40 E-value=41 Score=26.19 Aligned_cols=18 Identities=39% Similarity=0.593 Sum_probs=15.7
Q ss_pred EEeeCCCeeeccceeeee
Q 034705 7 FLKNTGDFVKKGDEFGYF 24 (86)
Q Consensus 7 ~~~~~g~~v~KGeElG~F 24 (86)
..+++|.+|+|||.+|+-
T Consensus 268 ~~v~~G~~V~~G~~lg~I 285 (325)
T TIGR02994 268 FMIDLGDPVSKGDVIARV 285 (325)
T ss_pred EecCCCCEeCCCCEEEEE
Confidence 346899999999999986
No 47
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=30.10 E-value=37 Score=22.28 Aligned_cols=18 Identities=33% Similarity=0.374 Sum_probs=15.7
Q ss_pred EeeCCCeeeccceeeeee
Q 034705 8 LKNTGDFVKKGDEFGYFS 25 (86)
Q Consensus 8 ~~~~g~~v~KGeElG~F~ 25 (86)
.+++|+.|++||-+|.=.
T Consensus 45 ~V~~Gd~V~~GQ~Ia~~~ 62 (101)
T PF13375_consen 45 VVKVGDKVKKGQLIAEAE 62 (101)
T ss_pred EEcCCCEEcCCCEEEecC
Confidence 468999999999999875
No 48
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=29.46 E-value=98 Score=25.25 Aligned_cols=54 Identities=19% Similarity=0.214 Sum_probs=30.9
Q ss_pred EEEeeCCCeeeccceeeeeecCCceEEEEEeC---CceeechhhhhcCcccceeeEeccccccccc
Q 034705 6 TFLKNTGDFVKKGDEFGYFSFGGSTVICVFEK---DAIQIDKDLLQNSARALETLVSVGMRMGVSK 68 (86)
Q Consensus 6 ~~~~~~g~~v~KGeElG~F~fGGSTvVllfe~---~~i~~~~~l~~~~~~~~et~V~~G~~ig~~~ 68 (86)
.|.+++|+.|++||.+-.=+-- -..+-.+. |.+.- -...+++. |..|+.|+...
T Consensus 63 ~w~v~~Gd~V~~Gd~L~~vEtd--K~~~ei~Ap~~G~v~~-i~v~~G~~------V~~G~~L~~I~ 119 (418)
T PTZ00144 63 EWKKKVGDYVKEDEVICIIETD--KVSVDIRAPASGVITK-IFAEEGDT------VEVGAPLSEID 119 (418)
T ss_pred EEEeCCCCEeCCCCEEEEEEEc--ceEEEEecCCCeEEEE-EEeCCCCE------ecCCCEEEEEc
Confidence 5567899999999988776652 22222222 22210 01233444 88888887753
No 49
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=29.25 E-value=1.3e+02 Score=20.66 Aligned_cols=21 Identities=19% Similarity=0.211 Sum_probs=16.3
Q ss_pred EEEeeCCCeeeccceeeeeec
Q 034705 6 TFLKNTGDFVKKGDEFGYFSF 26 (86)
Q Consensus 6 ~~~~~~g~~v~KGeElG~F~f 26 (86)
.+.++.|..+++||-+-..+=
T Consensus 74 ~i~V~~Gd~V~~Gq~L~~lEa 94 (130)
T PRK06549 74 KVLVAVGDQVTENQPLLILEA 94 (130)
T ss_pred EEEeCCCCEECCCCEEEEEec
Confidence 445789999999988876654
No 50
>KOG1881 consensus Anion exchanger adaptor protein Kanadaptin, contains FHA domain [General function prediction only]
Probab=28.36 E-value=30 Score=30.71 Aligned_cols=16 Identities=38% Similarity=0.659 Sum_probs=14.0
Q ss_pred eeecCCceEEEEEeCC
Q 034705 23 YFSFGGSTVICVFEKD 38 (86)
Q Consensus 23 ~F~fGGSTvVllfe~~ 38 (86)
.|+|||||-|.+||-.
T Consensus 252 v~~fggsTrl~i~Qgp 267 (793)
T KOG1881|consen 252 VARFGGSTRLYIFQGP 267 (793)
T ss_pred HHHhcCceEEEEeeCC
Confidence 4789999999999964
No 51
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=28.26 E-value=1.1e+02 Score=24.71 Aligned_cols=56 Identities=18% Similarity=0.190 Sum_probs=31.8
Q ss_pred EEEeeCCCeeeccceeeeeecCCceEEEEEeC-CceeechhhhhcCcccceeeEeccccccccc
Q 034705 6 TFLKNTGDFVKKGDEFGYFSFGGSTVICVFEK-DAIQIDKDLLQNSARALETLVSVGMRMGVSK 68 (86)
Q Consensus 6 ~~~~~~g~~v~KGeElG~F~fGGSTvVllfe~-~~i~~~~~l~~~~~~~~et~V~~G~~ig~~~ 68 (86)
.|.+++|..|++||.+-.-+--=.++-+--+. |.+. .-....+.. |..|+.|+...
T Consensus 21 ~w~v~~Gd~V~~Gd~l~~vEtdK~~~ei~a~~~G~v~-~i~v~~G~~------V~~G~~l~~i~ 77 (407)
T PRK05704 21 TWHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLS-EILAEEGDT------VTVGQVLGRID 77 (407)
T ss_pred EEEeCCcCEeCCCCEEEEEEecCceeEEecCCCEEEE-EEEeCCCCE------eCCCCEEEEEe
Confidence 56678999999998887666532232222221 2221 001233444 88888888764
No 52
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=27.96 E-value=53 Score=24.70 Aligned_cols=17 Identities=41% Similarity=0.763 Sum_probs=14.9
Q ss_pred EeeCCCeeeccceeeee
Q 034705 8 LKNTGDFVKKGDEFGYF 24 (86)
Q Consensus 8 ~~~~g~~v~KGeElG~F 24 (86)
.+++|..|+|||.+|+=
T Consensus 237 ~~~~G~~V~~G~~lg~i 253 (288)
T cd06254 237 FVKAGDTVQKGALLGYV 253 (288)
T ss_pred ecCCCCEecCCCEEEEE
Confidence 35799999999999986
No 53
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=27.33 E-value=55 Score=25.04 Aligned_cols=16 Identities=38% Similarity=0.455 Sum_probs=14.6
Q ss_pred EeeCCCeeeccceeee
Q 034705 8 LKNTGDFVKKGDEFGY 23 (86)
Q Consensus 8 ~~~~g~~v~KGeElG~ 23 (86)
.+++|..|+|||.+|+
T Consensus 258 ~~~~G~~V~~G~~lg~ 273 (316)
T cd06252 258 LVDLGDEVSAGQVAGR 273 (316)
T ss_pred ecCCCCEEcCCCEEEE
Confidence 4689999999999999
No 54
>PRK10871 nlpD lipoprotein NlpD; Provisional
Probab=26.88 E-value=37 Score=26.82 Aligned_cols=15 Identities=20% Similarity=0.202 Sum_probs=13.3
Q ss_pred eeCCCeeeccceeee
Q 034705 9 KNTGDFVKKGDEFGY 23 (86)
Q Consensus 9 ~~~g~~v~KGeElG~ 23 (86)
++.|..|++||.+|.
T Consensus 274 Vk~Gq~V~~Gq~Ig~ 288 (319)
T PRK10871 274 VREQQEVKAGQKIAT 288 (319)
T ss_pred cCCcCEECCCCeEEe
Confidence 578999999999994
No 55
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=26.69 E-value=46 Score=22.89 Aligned_cols=19 Identities=37% Similarity=0.501 Sum_probs=14.1
Q ss_pred EeeCCCeeeccceeeeeec
Q 034705 8 LKNTGDFVKKGDEFGYFSF 26 (86)
Q Consensus 8 ~~~~g~~v~KGeElG~F~f 26 (86)
.++.|.++++||.+..|.+
T Consensus 89 ~v~~G~~V~~G~~L~~~D~ 107 (132)
T PF00358_consen 89 LVKEGDKVKAGQPLIEFDL 107 (132)
T ss_dssp SS-TTSEE-TTEEEEEE-H
T ss_pred EEeCCCEEECCCEEEEEcH
Confidence 4579999999999999975
No 56
>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry.; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.
Probab=26.03 E-value=47 Score=23.95 Aligned_cols=16 Identities=38% Similarity=0.488 Sum_probs=10.0
Q ss_pred EeeCCCeeeccceeee
Q 034705 8 LKNTGDFVKKGDEFGY 23 (86)
Q Consensus 8 ~~~~g~~v~KGeElG~ 23 (86)
.++.|..|+|||-|=.
T Consensus 16 ~V~eG~~VkkGq~L~~ 31 (305)
T PF00529_consen 16 LVKEGQRVKKGQVLAR 31 (305)
T ss_dssp -S-TTEEE-TTSECEE
T ss_pred EccCcCEEeCCCEEEE
Confidence 4688899999887643
No 57
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=25.76 E-value=60 Score=25.55 Aligned_cols=54 Identities=17% Similarity=0.271 Sum_probs=31.7
Q ss_pred EEEeeCCCeeeccceeeee--ecCCceEEE--EEeCCceeechhhhhcCcccceeeEecccccccc
Q 034705 6 TFLKNTGDFVKKGDEFGYF--SFGGSTVIC--VFEKDAIQIDKDLLQNSARALETLVSVGMRMGVS 67 (86)
Q Consensus 6 ~~~~~~g~~v~KGeElG~F--~fGGSTvVl--lfe~~~i~~~~~l~~~~~~~~et~V~~G~~ig~~ 67 (86)
+..+++|..|+|||.+|+- -||.-+..+ ..+.+-+-|. ...+. .|..|+.|++.
T Consensus 301 ~~~~~~Gd~V~~G~~lg~I~d~~g~~~~~~~v~Ap~dGiv~~--~~~~~------~V~~G~~l~~I 358 (359)
T cd06250 301 VYRAAPGDWVEAGDVLAEILDPLGDGVGPVEIRAPTDGLLFA--RASRR------FVRAGDELAKI 358 (359)
T ss_pred EEecCCCCEecCCCEEEEEECCCCCccceeEEECCCCcEEEE--ecCCc------cccCCCeEEEe
Confidence 3446899999999999985 354333332 4443323332 12222 27788877653
No 58
>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial. The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.
Probab=25.55 E-value=84 Score=20.95 Aligned_cols=47 Identities=17% Similarity=0.275 Sum_probs=28.0
Q ss_pred cccEEEE--eeCCCeeeccceeeeeecCCceEEEEEeC-Cc-eeechhhhh
Q 034705 2 VGSITFL--KNTGDFVKKGDEFGYFSFGGSTVICVFEK-DA-IQIDKDLLQ 48 (86)
Q Consensus 2 VgsI~~~--~~~g~~v~KGeElG~F~fGGSTvVllfe~-~~-i~~~~~l~~ 48 (86)
.|+|..- .+.|.++++||.++-.+-...+.=+..+- |. +.++..+..
T Consensus 29 lG~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~ei~sP~sG~Vv~vN~~l~~ 79 (110)
T TIGR03077 29 LGNILHIDLPSVGSSCKEGEVLVILESSKSAIEVLSPVSGEVIEVNIALED 79 (110)
T ss_pred cCCEEEEECCCCCCEEcCCCEEEEEEeccEEEEEeCCCCEEEEEEHHHhhh
Confidence 3566544 36789999999999999843333333332 22 345444433
No 59
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=25.46 E-value=53 Score=19.24 Aligned_cols=10 Identities=30% Similarity=0.571 Sum_probs=7.9
Q ss_pred CceEEEEEeC
Q 034705 28 GSTVICVFEK 37 (86)
Q Consensus 28 GSTvVllfe~ 37 (86)
|+||+.|+++
T Consensus 59 G~~v~~l~~~ 68 (85)
T PF08544_consen 59 GPTVFALCKD 68 (85)
T ss_dssp SSEEEEEESS
T ss_pred CCeEEEEECC
Confidence 6799999944
No 60
>PF03388 Lectin_leg-like: Legume-like lectin family; InterPro: IPR005052 Lectins are structurally diverse proteins that bind to specific carbohydrates. This family includes the VIP36 and ERGIC-53 lectins. These two proteins were the first members of the family of animal lectins similar to the leguminous plant lectins []. The alignment for this family is towards the N terminus, where the similarity of VIP36 and ERGIC-53 is greatest. Although they have been identified as a family of animal lectins, this alignment also includes yeast sequences[]. ERGIC-53 is a 53kDa protein, localised to the intermediate region between the endoplasmic reticulum and the Golgi apparatus (ER-Golgi-Intermediate Compartment, ERGIC). It was identified as a calcium-dependent, mannose-specific lectin []. Its dysfunction has been associated with combined factors V and VIII deficiency, suggesting an important and substrate-specific role for ERGIC-53 in the glycoprotein-secreting pathway [,]. The L-type lectin-like domain has an overall globular shape composed of a beta-sandwich of two major twisted antiparallel beta-sheets. The beta-sandwich comprises a major concave beta-sheet and a minor convex beta-sheet, in a variation of the jelly roll fold [, , , ]. ; GO: 0016020 membrane; PDB: 3A4U_A 3LCP_B 2A6Z_A 2A71_C 2A70_B 2A6Y_A 2A6X_A 2A6W_B 2A6V_B 2E6V_B ....
Probab=25.41 E-value=43 Score=24.51 Aligned_cols=33 Identities=27% Similarity=0.408 Sum_probs=21.5
Q ss_pred eCCCeeeccceeeeeecCCceEEEEEeCCceeechh
Q 034705 10 NTGDFVKKGDEFGYFSFGGSTVICVFEKDAIQIDKD 45 (86)
Q Consensus 10 ~~g~~v~KGeElG~F~fGGSTvVllfe~~~i~~~~~ 45 (86)
.++....-..+++++.++|||+|. .+.|.+-++
T Consensus 10 ~~P~~~~~~~~i~~W~~~G~t~i~---~~~IrLTp~ 42 (229)
T PF03388_consen 10 SPPFLDNGDNEIPNWDIGGSTVIT---DNFIRLTPD 42 (229)
T ss_dssp ESSSCSCTTSCBTTEEEEET-EEE---SSEEEEE-S
T ss_pred CCCcCcCCCCccCCEEECCeEEec---CCEEEECCC
Confidence 455555556789999999999865 555655543
No 61
>PRK00624 glycine cleavage system protein H; Provisional
Probab=25.35 E-value=88 Score=21.00 Aligned_cols=34 Identities=21% Similarity=0.391 Sum_probs=23.4
Q ss_pred cccEEEE--eeCCCeeeccceeeeeecCCceEEEEE
Q 034705 2 VGSITFL--KNTGDFVKKGDEFGYFSFGGSTVICVF 35 (86)
Q Consensus 2 VgsI~~~--~~~g~~v~KGeElG~F~fGGSTvVllf 35 (86)
.|+|..- .+.|..+++||+++-.+-.....=+..
T Consensus 31 lG~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~~i~s 66 (114)
T PRK00624 31 LGNILHIDLPSVGSFCKEGEVLVILESSKSAIEVLS 66 (114)
T ss_pred cCCEEEEECCCCCCEEeCCCEEEEEEeccEEEEEeC
Confidence 4666554 256899999999999998544333333
No 62
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=24.68 E-value=75 Score=23.59 Aligned_cols=18 Identities=28% Similarity=0.429 Sum_probs=14.6
Q ss_pred EeeCCCeeeccceeeeee
Q 034705 8 LKNTGDFVKKGDEFGYFS 25 (86)
Q Consensus 8 ~~~~g~~v~KGeElG~F~ 25 (86)
.+++|..|+|||.+-.+.
T Consensus 57 ~v~~G~~V~kGq~L~~ld 74 (334)
T TIGR00998 57 NVDDTDYVKQGDVLVRLD 74 (334)
T ss_pred EeCCCCEEcCCCEEEEEC
Confidence 468999999999887764
No 63
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=24.26 E-value=1.5e+02 Score=24.74 Aligned_cols=55 Identities=16% Similarity=0.193 Sum_probs=33.9
Q ss_pred EEEeeCCCeeeccceeeeeecCCceEEEEEe-CCcee-echhhhhcCcccceeeEeccccccccc
Q 034705 6 TFLKNTGDFVKKGDEFGYFSFGGSTVICVFE-KDAIQ-IDKDLLQNSARALETLVSVGMRMGVSK 68 (86)
Q Consensus 6 ~~~~~~g~~v~KGeElG~F~fGGSTvVllfe-~~~i~-~~~~l~~~~~~~~et~V~~G~~ig~~~ 68 (86)
.|.++.|..+++||.+...+=--...-+..+ .+.+. +. +..+.. |+.|+.|+...
T Consensus 18 ~~~v~~Gd~V~~G~~l~~vet~K~~~~I~a~~~G~V~~i~--~~~Gd~------V~~G~~La~i~ 74 (546)
T TIGR01348 18 EVLVKPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEIK--VKVGDT------LPVGGVIATLE 74 (546)
T ss_pred EEEeCCCCEEcCCCEEEEEEcccceeEEEcCCCEEEEEEE--ecCCCE------EeccceEEEEe
Confidence 4567899999999999888763233233222 22222 21 223444 89999998753
No 64
>PF14005 YpjP: YpjP-like protein
Probab=23.81 E-value=15 Score=25.97 Aligned_cols=29 Identities=21% Similarity=0.359 Sum_probs=23.7
Q ss_pred eEeccccccccc-hhhhccCCcchhhhhhc
Q 034705 57 LVSVGMRMGVSK-KEILQTELPSLEACVIA 85 (86)
Q Consensus 57 ~V~~G~~ig~~~-~~~~~~~~~~~~~~~~~ 85 (86)
..|||+.|+... ..+..+++|.++.++.+
T Consensus 21 ~~KfG~kI~p~Iedef~~~IlPkie~~I~~ 50 (136)
T PF14005_consen 21 YKKFGSKIGPVIEDEFREEILPKIEEAIED 50 (136)
T ss_pred HHHHHHHHhHHHHHHHHHHHhHHHHHHHHH
Confidence 378999999865 45889999999988753
No 65
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=23.17 E-value=79 Score=22.71 Aligned_cols=19 Identities=42% Similarity=0.569 Sum_probs=16.8
Q ss_pred EeeCCCeeeccceeeeeec
Q 034705 8 LKNTGDFVKKGDEFGYFSF 26 (86)
Q Consensus 8 ~~~~g~~v~KGeElG~F~f 26 (86)
.++.|..+++||.+-.|.+
T Consensus 92 ~v~~Gd~Vk~Gd~Li~fDl 110 (156)
T COG2190 92 LVKEGDKVKAGDPLLEFDL 110 (156)
T ss_pred EeeCCCEEccCCEEEEECH
Confidence 3589999999999999976
No 66
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=22.89 E-value=1.6e+02 Score=23.28 Aligned_cols=56 Identities=21% Similarity=0.223 Sum_probs=32.1
Q ss_pred EEEeeCCCeeeccceeeeeecCCceEEEEEeC-CceeechhhhhcCcccceeeEeccccccccc
Q 034705 6 TFLKNTGDFVKKGDEFGYFSFGGSTVICVFEK-DAIQIDKDLLQNSARALETLVSVGMRMGVSK 68 (86)
Q Consensus 6 ~~~~~~g~~v~KGeElG~F~fGGSTvVllfe~-~~i~~~~~l~~~~~~~~et~V~~G~~ig~~~ 68 (86)
.|.++.|..+++||.+...+---+++-+-.+. |.+.- .....+.. |..|+.|+...
T Consensus 21 ~w~v~~Gd~V~~g~~l~~vet~K~~~~i~Ap~~G~i~~-~~v~~G~~------v~~G~~l~~i~ 77 (411)
T PRK11856 21 EWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAK-LLVEEGDV------VPVGSVIAVIE 77 (411)
T ss_pred EEEeCCcCEeCCCCEEEEEEecceEEEEeCCCCeEEEE-EecCCCCE------eCCCCEEEEEe
Confidence 56688999999999998876533333332221 22110 01223333 77788877653
No 67
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=22.62 E-value=85 Score=23.82 Aligned_cols=19 Identities=26% Similarity=0.235 Sum_probs=15.0
Q ss_pred EEeeCCCeeeccceeeeee
Q 034705 7 FLKNTGDFVKKGDEFGYFS 25 (86)
Q Consensus 7 ~~~~~g~~v~KGeElG~F~ 25 (86)
+.++.|..|+|||-+-.+.
T Consensus 62 v~V~~G~~VkkGq~L~~ld 80 (346)
T PRK10476 62 LAVTENQAVKKGDLLFRID 80 (346)
T ss_pred EEeCCCCEEcCCCEEEEEC
Confidence 3468999999999886664
No 68
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=22.52 E-value=1.5e+02 Score=27.37 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=17.7
Q ss_pred ccE-EEEeeCCCeeeccceeeeee
Q 034705 3 GSI-TFLKNTGDFVKKGDEFGYFS 25 (86)
Q Consensus 3 gsI-~~~~~~g~~v~KGeElG~F~ 25 (86)
|+| .+.++.|..|++||.+..-+
T Consensus 1141 G~v~~~~v~~Gd~V~~Gd~l~~iE 1164 (1201)
T TIGR02712 1141 GNFWKVLVEVGDRVEAGQPLVILE 1164 (1201)
T ss_pred EEEEEEEeCCCCEECCCCEEEEEE
Confidence 444 55689999999999887654
No 69
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....
Probab=21.30 E-value=95 Score=19.28 Aligned_cols=21 Identities=29% Similarity=0.419 Sum_probs=13.7
Q ss_pred EEEEeeCCCeeeccceeeeee
Q 034705 5 ITFLKNTGDFVKKGDEFGYFS 25 (86)
Q Consensus 5 I~~~~~~g~~v~KGeElG~F~ 25 (86)
+.+.++.|..+++|+.+...+
T Consensus 47 v~~~~~dG~~v~~g~~i~~i~ 67 (88)
T PF02749_consen 47 VEWLVKDGDRVEPGDVILEIE 67 (88)
T ss_dssp EEESS-TT-EEETTCEEEEEE
T ss_pred EEEEeCCCCCccCCcEEEEEE
Confidence 445568899999999776554
No 70
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=21.28 E-value=1.7e+02 Score=24.26 Aligned_cols=56 Identities=18% Similarity=0.158 Sum_probs=33.6
Q ss_pred EEEeeCCCeeeccceeeeeecCCceEEEEEeC-CceeechhhhhcCcccceeeEeccccccccc
Q 034705 6 TFLKNTGDFVKKGDEFGYFSFGGSTVICVFEK-DAIQIDKDLLQNSARALETLVSVGMRMGVSK 68 (86)
Q Consensus 6 ~~~~~~g~~v~KGeElG~F~fGGSTvVllfe~-~~i~~~~~l~~~~~~~~et~V~~G~~ig~~~ 68 (86)
.|.++.|..+++||.+...+=--+++.+-.+. +.+..- .+..+.. |+.|+.|+...
T Consensus 20 ~~~v~~Gd~V~~g~~l~~iEt~K~~~~I~A~~~G~I~~i-~v~~Gd~------V~~G~~L~~i~ 76 (547)
T PRK11855 20 EWLVKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEI-KVKVGDT------VSVGGLLAVIE 76 (547)
T ss_pred EEEcCCCCEeCCCCEEEEEEecCeeEEEecCCCeEEEEE-EeCCCCE------ecCCceeeEec
Confidence 45678999999999999886533343333332 332211 1223333 88888887653
No 71
>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]
Probab=21.22 E-value=1.3e+02 Score=25.30 Aligned_cols=59 Identities=22% Similarity=0.241 Sum_probs=32.5
Q ss_pred ccE-EEEeeCCCeeeccceeeeeecCCceEEEEEe-CCceeech-hhhhcCcccceeeEeccccccccc
Q 034705 3 GSI-TFLKNTGDFVKKGDEFGYFSFGGSTVICVFE-KDAIQIDK-DLLQNSARALETLVSVGMRMGVSK 68 (86)
Q Consensus 3 gsI-~~~~~~g~~v~KGeElG~F~fGGSTvVllfe-~~~i~~~~-~l~~~~~~~~et~V~~G~~ig~~~ 68 (86)
|.| .|.+|.|..+++||=+..-+-==+|+=+=++ .|- +.. -+.++++ .|.+|+.|+...
T Consensus 53 GnIvsW~kKeGdkls~GDvl~EVETDKAtmd~E~~ddGy--LAKILi~EGsk-----dvpVGk~Iaiiv 114 (470)
T KOG0557|consen 53 GNIVSWKKKEGDKLSAGDVLLEVETDKATMDVEAQDDGY--LAKILIEEGSK-----DVPVGKPIAIIV 114 (470)
T ss_pred CceeeEeeccCCccCCCceEEEEecccceeeeeeccCCe--eeeeeeccCcc-----cccCCCceEEEe
Confidence 444 6788999999998865544432222211111 110 000 0234555 499999999865
No 72
>PRK13380 glycine cleavage system protein H; Provisional
Probab=20.94 E-value=1.8e+02 Score=20.11 Aligned_cols=36 Identities=22% Similarity=0.275 Sum_probs=25.9
Q ss_pred CcccEEEE-e-eCCCeeeccceeeeeecCCceEEEEEe
Q 034705 1 MVGSITFL-K-NTGDFVKKGDEFGYFSFGGSTVICVFE 36 (86)
Q Consensus 1 ~VgsI~~~-~-~~g~~v~KGeElG~F~fGGSTvVllfe 36 (86)
+.|+|..- . ++|..+++||+++-.+-.....=+..|
T Consensus 42 ~lG~I~~v~lp~~G~~V~~Gd~~~~IEs~K~~~~v~sP 79 (144)
T PRK13380 42 MAGDVVFVRLKELGKKVEKGKPVATLESGKWAGPVPAP 79 (144)
T ss_pred hcCCEEEEEcCCCCCEeeCCCeEEEEEEcceEeeeecC
Confidence 35677554 2 479999999999999985555555554
No 73
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=20.84 E-value=1.8e+02 Score=24.62 Aligned_cols=56 Identities=11% Similarity=0.047 Sum_probs=32.5
Q ss_pred EEEeeCCCeeeccceeeeeecCCceEEEEEe-CCceeechhhhhcCcccceeeEeccccccccc
Q 034705 6 TFLKNTGDFVKKGDEFGYFSFGGSTVICVFE-KDAIQIDKDLLQNSARALETLVSVGMRMGVSK 68 (86)
Q Consensus 6 ~~~~~~g~~v~KGeElG~F~fGGSTvVllfe-~~~i~~~~~l~~~~~~~~et~V~~G~~ig~~~ 68 (86)
.|.++.|..+++||++-.=+===.++-+-.+ .+.+..- .+..+.. |+.|+.|+...
T Consensus 19 ~~~v~~Gd~V~~g~~l~~vEt~K~~~~v~a~~~G~v~~i-~~~~g~~------V~~G~~l~~i~ 75 (633)
T PRK11854 19 EILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEI-KVKVGDK------VETGALIMIFE 75 (633)
T ss_pred EEEeCCCCEECCCCEEEEEEeCCeeEEEeCCCCEEEEEE-EeCCCCE------EeCCCEEEEEe
Confidence 5668999999999997655321122233332 2333211 1233444 89999998764
No 74
>PF12141 DUF3589: Protein of unknown function (DUF3589); InterPro: IPR021988 This family of proteins is found in eukaryotes. Proteins in this family are typically between 541 and 717 amino acids in length. The function of this family is not known,
Probab=20.74 E-value=37 Score=28.43 Aligned_cols=12 Identities=50% Similarity=0.861 Sum_probs=10.2
Q ss_pred eeeeeecCCceE
Q 034705 20 EFGYFSFGGSTV 31 (86)
Q Consensus 20 ElG~F~fGGSTv 31 (86)
+.=||+|+||+|
T Consensus 62 ~k~WfrF~GSSV 73 (498)
T PF12141_consen 62 EKHWFRFAGSSV 73 (498)
T ss_pred HhhhhhhcCceE
Confidence 466999999987
No 75
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=20.62 E-value=96 Score=23.32 Aligned_cols=18 Identities=33% Similarity=0.527 Sum_probs=14.3
Q ss_pred EeeCCCeeeccceeeeee
Q 034705 8 LKNTGDFVKKGDEFGYFS 25 (86)
Q Consensus 8 ~~~~g~~v~KGeElG~F~ 25 (86)
.++.|..|+|||.+..+.
T Consensus 58 ~v~~Gd~V~kG~~L~~ld 75 (331)
T PRK03598 58 AVDEGDAVKAGQVLGELD 75 (331)
T ss_pred EcCCCCEEcCCCEEEEEC
Confidence 468899999999887664
No 76
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=20.51 E-value=1.8e+02 Score=24.61 Aligned_cols=55 Identities=15% Similarity=-0.003 Sum_probs=31.3
Q ss_pred EEEeeCCCeeeccceeeeeecCCceEEEEEe-CCceeechhhhhcCcccceeeEecccccccc
Q 034705 6 TFLKNTGDFVKKGDEFGYFSFGGSTVICVFE-KDAIQIDKDLLQNSARALETLVSVGMRMGVS 67 (86)
Q Consensus 6 ~~~~~~g~~v~KGeElG~F~fGGSTvVllfe-~~~i~~~~~l~~~~~~~~et~V~~G~~ig~~ 67 (86)
.+.++.|..|+|||-+..-+=.-...-+..+ .|.+.- -....++. |..|+.|+..
T Consensus 535 ~~~V~~Gd~V~~Gq~L~~ieamKme~~V~Ap~~G~V~~-i~v~~G~~------V~~G~~L~~i 590 (592)
T PRK09282 535 KVKVKEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKE-ILVKEGDR------VNPGDVLMEI 590 (592)
T ss_pred EEEeCCCCEECCCCEEEEEeccccceEEEcCCCeEEEE-EEeCCCCE------eCCCCEEEEe
Confidence 3457899999999999886642222222222 333321 01333444 7778877654
No 77
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=20.16 E-value=99 Score=23.03 Aligned_cols=20 Identities=25% Similarity=0.361 Sum_probs=15.6
Q ss_pred EEeeCCCeeeccceeeeeec
Q 034705 7 FLKNTGDFVKKGDEFGYFSF 26 (86)
Q Consensus 7 ~~~~~g~~v~KGeElG~F~f 26 (86)
+.++.|..|+|||.|-...-
T Consensus 30 i~V~eG~~V~~G~~L~~ld~ 49 (327)
T TIGR02971 30 LLVAEGDRVQAGQVLAELDS 49 (327)
T ss_pred EEccCCCEecCCcEEEEecC
Confidence 45789999999998866554
Done!