Query 034705
Match_columns 86
No_of_seqs 114 out of 1000
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 08:56:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034705.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034705hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1z6h_A Biotin/lipoyl attachmen 86.9 1.2 4.1E-05 25.1 4.4 56 6-68 12-68 (72)
2 2d5d_A Methylmalonyl-COA decar 81.4 2.3 7.7E-05 23.9 3.9 21 6-26 18-38 (74)
3 1qjo_A Dihydrolipoamide acetyl 78.0 2.9 0.0001 24.1 3.7 55 7-68 20-75 (80)
4 1iyu_A E2P, dihydrolipoamide a 73.3 5.4 0.00019 23.0 4.0 55 7-68 18-73 (79)
5 1bdo_A Acetyl-COA carboxylase; 72.8 3.6 0.00012 23.8 3.1 19 8-26 26-44 (80)
6 1dcz_A Transcarboxylase 1.3S s 71.0 5.2 0.00018 22.7 3.5 20 7-26 22-41 (77)
7 3crk_C Dihydrolipoyllysine-res 69.9 8.5 0.00029 22.8 4.4 57 6-68 24-81 (87)
8 1ghj_A E2, E2, the dihydrolipo 62.9 5 0.00017 23.2 2.3 19 8-26 22-40 (79)
9 2ejm_A Methylcrotonoyl-COA car 61.7 9.6 0.00033 23.2 3.6 55 6-68 27-83 (99)
10 1gjx_A Pyruvate dehydrogenase; 59.9 8.2 0.00028 22.2 2.9 20 7-26 21-40 (81)
11 1k8m_A E2 component of branche 59.0 6.3 0.00021 23.9 2.3 21 6-26 23-43 (93)
12 2dnc_A Pyruvate dehydrogenase 57.9 13 0.00044 22.8 3.7 57 6-69 26-84 (98)
13 2l5t_A Lipoamide acyltransfera 55.6 5.8 0.0002 22.7 1.7 19 8-26 22-40 (77)
14 2dne_A Dihydrolipoyllysine-res 54.7 15 0.0005 23.0 3.6 57 6-68 26-83 (108)
15 1y8o_B Dihydrolipoyllysine-res 54.7 20 0.00069 23.4 4.4 57 6-68 46-103 (128)
16 2kcc_A Acetyl-COA carboxylase 52.4 15 0.00051 21.6 3.2 55 6-68 18-73 (84)
17 2jku_A Propionyl-COA carboxyla 50.7 7.1 0.00024 23.6 1.6 20 7-26 39-58 (94)
18 2k7v_A Dihydrolipoyllysine-res 50.7 4.8 0.00016 23.7 0.8 56 7-69 16-72 (85)
19 2gpr_A Glucose-permease IIA co 47.9 9.9 0.00034 25.8 2.1 20 7-26 93-112 (154)
20 1f3z_A EIIA-GLC, glucose-speci 45.4 11 0.00038 25.8 2.0 19 8-26 99-117 (161)
21 1ax3_A Iiaglc, glucose permeas 44.0 11 0.00037 25.9 1.8 19 8-26 99-117 (162)
22 3k3s_A Altronate hydrolase; st 43.7 12 0.00041 24.3 1.9 48 14-70 39-89 (105)
23 3cdx_A Succinylglutamatedesucc 35.1 33 0.0011 25.4 3.4 52 9-68 282-337 (354)
24 2dn8_A Acetyl-COA carboxylase 33.0 22 0.00076 21.4 1.8 55 6-68 30-85 (100)
25 2k32_A A; NMR {Campylobacter j 31.8 31 0.0011 21.0 2.4 20 7-26 15-34 (116)
26 2cu1_A Mitogen-activated prote 30.6 14 0.00048 24.1 0.6 35 23-65 12-46 (103)
27 3va7_A KLLA0E08119P; carboxyla 29.7 48 0.0016 29.2 3.9 25 1-25 1174-1199(1236)
28 3it5_A Protease LASA; metallop 28.6 24 0.00081 24.2 1.5 17 9-25 87-103 (182)
29 2hsi_A Putative peptidase M23; 28.6 25 0.00087 25.8 1.8 16 8-23 233-248 (282)
30 3n6r_A Propionyl-COA carboxyla 27.1 62 0.0021 26.2 4.0 25 1-25 619-644 (681)
31 1qwy_A Peptidoglycan hydrolase 24.9 33 0.0011 25.7 1.8 17 8-24 240-256 (291)
32 4h87_A Kanadaptin; FHA domain 24.8 37 0.0013 21.8 1.8 8 25-32 118-125 (130)
33 3tuf_B Stage II sporulation pr 23.5 35 0.0012 24.7 1.7 17 8-24 136-152 (245)
34 3fmc_A Putative succinylglutam 22.8 35 0.0012 25.7 1.6 54 7-68 303-362 (368)
35 2gu1_A Zinc peptidase; alpha/b 22.4 39 0.0013 25.1 1.8 17 8-24 285-301 (361)
36 1pmr_A Dihydrolipoyl succinylt 22.1 15 0.00053 21.1 -0.4 20 7-26 22-41 (80)
37 3hbl_A Pyruvate carboxylase; T 21.1 93 0.0032 27.0 4.1 61 1-68 1084-1146(1150)
38 3csq_A Morphogenesis protein 1 20.9 39 0.0013 25.0 1.5 15 9-23 253-267 (334)
39 3our_B EIIA, phosphotransferas 20.2 48 0.0017 23.3 1.8 19 8-26 121-139 (183)
40 3na6_A Succinylglutamate desuc 20.2 47 0.0016 24.4 1.9 52 8-68 271-327 (331)
No 1
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=86.93 E-value=1.2 Score=25.13 Aligned_cols=56 Identities=14% Similarity=0.115 Sum_probs=34.1
Q ss_pred EEEeeCCCeeeccceeeeeecCCceEEEEEeC-CceeechhhhhcCcccceeeEeccccccccc
Q 034705 6 TFLKNTGDFVKKGDEFGYFSFGGSTVICVFEK-DAIQIDKDLLQNSARALETLVSVGMRMGVSK 68 (86)
Q Consensus 6 ~~~~~~g~~v~KGeElG~F~fGGSTvVllfe~-~~i~~~~~l~~~~~~~~et~V~~G~~ig~~~ 68 (86)
.+.++.|..++|||.+...+-.-...-+-.+- +.+.- -....++. |..|+.|+...
T Consensus 12 ~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~-~~v~~G~~------V~~G~~l~~i~ 68 (72)
T 1z6h_A 12 KVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKE-VKKKEGDF------VNEGDVLLELS 68 (72)
T ss_dssp EECCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEE-ESSCTTCE------ECTTCEEEEEG
T ss_pred EEEcCCcCEECCCCEEEEEECCccEEEEECCCCcEEEE-EecCCCCE------ECCCCEEEEEe
Confidence 34568999999999999998733333333332 22221 11334444 88888887654
No 2
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=81.40 E-value=2.3 Score=23.94 Aligned_cols=21 Identities=24% Similarity=0.289 Sum_probs=18.0
Q ss_pred EEEeeCCCeeeccceeeeeec
Q 034705 6 TFLKNTGDFVKKGDEFGYFSF 26 (86)
Q Consensus 6 ~~~~~~g~~v~KGeElG~F~f 26 (86)
.+.++.|..++|||.+..++-
T Consensus 18 ~~~v~~G~~V~~G~~l~~i~~ 38 (74)
T 2d5d_A 18 RVLVRVGDRVRVGQGLLVLEA 38 (74)
T ss_dssp EECCCTTCEECTTCEEEEEEE
T ss_pred EEEcCCCCEeCCCCEEEEEec
Confidence 345689999999999999986
No 3
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=77.98 E-value=2.9 Score=24.13 Aligned_cols=55 Identities=9% Similarity=0.042 Sum_probs=33.4
Q ss_pred EEeeCCCeeeccceeeeeecCCceEEEEEeCC-ceeechhhhhcCcccceeeEeccccccccc
Q 034705 7 FLKNTGDFVKKGDEFGYFSFGGSTVICVFEKD-AIQIDKDLLQNSARALETLVSVGMRMGVSK 68 (86)
Q Consensus 7 ~~~~~g~~v~KGeElG~F~fGGSTvVllfe~~-~i~~~~~l~~~~~~~~et~V~~G~~ig~~~ 68 (86)
+.+++|..+++||.+...+---...-+-.+-. .+. .-....+.. |..|+.|+...
T Consensus 20 ~~v~~G~~V~~G~~l~~ie~~~~~~~i~Ap~~G~v~-~~~v~~G~~------V~~G~~l~~i~ 75 (80)
T 1qjo_A 20 VMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVK-ELKVNVGDK------VKTGSLIMIFE 75 (80)
T ss_dssp CCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEE-ECCCCTTCE------ECTTCCCEEEE
T ss_pred EEcCCCCEECCCCEEEEEEcCCceEEEeCCCCEEEE-EEecCCCCE------ECCCCEEEEEE
Confidence 34689999999999999986433333333322 222 111233444 88888887654
No 4
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=73.28 E-value=5.4 Score=22.99 Aligned_cols=55 Identities=11% Similarity=0.108 Sum_probs=31.2
Q ss_pred EEeeCCCeeeccceeeeeecCCceEEEEEeC-CceeechhhhhcCcccceeeEeccccccccc
Q 034705 7 FLKNTGDFVKKGDEFGYFSFGGSTVICVFEK-DAIQIDKDLLQNSARALETLVSVGMRMGVSK 68 (86)
Q Consensus 7 ~~~~~g~~v~KGeElG~F~fGGSTvVllfe~-~~i~~~~~l~~~~~~~~et~V~~G~~ig~~~ 68 (86)
+.++.|..+++||.+...+---...-+-.+- +.+.- -....+.. |..|+.|+...
T Consensus 18 ~~v~~Gd~V~~G~~l~~le~~k~~~~i~Ap~~G~v~~-~~v~~G~~------V~~g~~l~~i~ 73 (79)
T 1iyu_A 18 LLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKS-VSVKLGDK------LKEGDAIIELE 73 (79)
T ss_dssp ECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEE-ESCCTTCE------EETTSEEEEEE
T ss_pred EecCCCCEEcCCCEEEEEEccceEEEEECCCCEEEEE-EEeCCCCE------ECCCCEEEEEe
Confidence 4568999999999999887622222222221 22220 11223443 88888877654
No 5
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=72.78 E-value=3.6 Score=23.79 Aligned_cols=19 Identities=21% Similarity=0.282 Sum_probs=17.0
Q ss_pred EeeCCCeeeccceeeeeec
Q 034705 8 LKNTGDFVKKGDEFGYFSF 26 (86)
Q Consensus 8 ~~~~g~~v~KGeElG~F~f 26 (86)
.+++|..++|||.++..+=
T Consensus 26 ~v~~G~~V~~G~~l~~ie~ 44 (80)
T 1bdo_A 26 FIEVGQKVNVGDTLCIVEA 44 (80)
T ss_dssp SCCTTCEECTTCEEEEEEE
T ss_pred ccCCcCEECCCCEEEEEEe
Confidence 4689999999999999986
No 6
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=70.99 E-value=5.2 Score=22.72 Aligned_cols=20 Identities=30% Similarity=0.355 Sum_probs=17.3
Q ss_pred EEeeCCCeeeccceeeeeec
Q 034705 7 FLKNTGDFVKKGDEFGYFSF 26 (86)
Q Consensus 7 ~~~~~g~~v~KGeElG~F~f 26 (86)
+.+++|..++|||.+...+-
T Consensus 22 ~~v~~G~~V~~G~~L~~l~~ 41 (77)
T 1dcz_A 22 ILVKEGDTVKAGQTVLVLEA 41 (77)
T ss_dssp ECCCTTCEECTTSEEEEEEE
T ss_pred EEcCCcCEEcCCCEEEEEEc
Confidence 45689999999999999875
No 7
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=69.93 E-value=8.5 Score=22.76 Aligned_cols=57 Identities=12% Similarity=0.149 Sum_probs=32.4
Q ss_pred EEEeeCCCeeeccceeeeeecCCceEEEEEeC-CceeechhhhhcCcccceeeEeccccccccc
Q 034705 6 TFLKNTGDFVKKGDEFGYFSFGGSTVICVFEK-DAIQIDKDLLQNSARALETLVSVGMRMGVSK 68 (86)
Q Consensus 6 ~~~~~~g~~v~KGeElG~F~fGGSTvVllfe~-~~i~~~~~l~~~~~~~~et~V~~G~~ig~~~ 68 (86)
.+.++.|..+++||.+..-+---.+.-+-.+. +.+.- -....+. +.|..|+.|+...
T Consensus 24 ~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~-~~v~~G~-----~~V~~G~~l~~i~ 81 (87)
T 3crk_C 24 RWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAK-ILVPEGT-----RDVPLGTPLCIIV 81 (87)
T ss_dssp EECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEE-ESSCTTC-----CCEETTCEEEEEE
T ss_pred EEEcCCCCEEcCCCEEEEEECCcccceeecCcCcEEEE-EEECCCC-----eEECCCCEEEEEE
Confidence 44578999999999999887533332222222 22210 0122333 0288888887654
No 8
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=62.94 E-value=5 Score=23.17 Aligned_cols=19 Identities=21% Similarity=0.219 Sum_probs=16.7
Q ss_pred EeeCCCeeeccceeeeeec
Q 034705 8 LKNTGDFVKKGDEFGYFSF 26 (86)
Q Consensus 8 ~~~~g~~v~KGeElG~F~f 26 (86)
.++.|..+++||.+...+-
T Consensus 22 ~v~~Gd~V~~G~~l~~ie~ 40 (79)
T 1ghj_A 22 HKKPGEAVKRDELIVDIET 40 (79)
T ss_dssp SSCTTSEECSSCEEEEEEC
T ss_pred EcCCCCEECCCCEEEEEEc
Confidence 4689999999999999886
No 9
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=61.74 E-value=9.6 Score=23.19 Aligned_cols=55 Identities=11% Similarity=0.029 Sum_probs=31.7
Q ss_pred EEEeeCCCeeeccceeeeeecCCceEEEEEeC--CceeechhhhhcCcccceeeEeccccccccc
Q 034705 6 TFLKNTGDFVKKGDEFGYFSFGGSTVICVFEK--DAIQIDKDLLQNSARALETLVSVGMRMGVSK 68 (86)
Q Consensus 6 ~~~~~~g~~v~KGeElG~F~fGGSTvVllfe~--~~i~~~~~l~~~~~~~~et~V~~G~~ig~~~ 68 (86)
.+.+++|..|+|||.+...+-. -...-+.-+ +.+. ......+. .|..|+.|+...
T Consensus 27 ~~~v~~Gd~V~~Gq~L~~ie~~-~~~~~i~AP~~G~V~-~~~v~~G~------~V~~G~~L~~i~ 83 (99)
T 2ejm_A 27 KVFVKAGDKVKAGDSLMVMIAM-KMEHTIKSPKDGTVK-KVFYREGA------QANRHTPLVEFE 83 (99)
T ss_dssp EECCCTTEEECSSCEEEEEESS-SSEEEEECSSCEEEE-EESCCTTE------EECTTCBCEEEC
T ss_pred EEECCCCCEECCCCEEEEEEcc-ceeEEEECCCCeEEE-EEEcCCCC------EECCCCEEEEEE
Confidence 3446899999999999999862 222222212 1221 00122233 388888888754
No 10
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=59.87 E-value=8.2 Score=22.24 Aligned_cols=20 Identities=20% Similarity=0.165 Sum_probs=17.2
Q ss_pred EEeeCCCeeeccceeeeeec
Q 034705 7 FLKNTGDFVKKGDEFGYFSF 26 (86)
Q Consensus 7 ~~~~~g~~v~KGeElG~F~f 26 (86)
+.++.|..+++||.+...+-
T Consensus 21 ~~v~~Gd~V~~G~~l~~ie~ 40 (81)
T 1gjx_A 21 VEVNVGDTIAVDDTLITLET 40 (81)
T ss_dssp ECCCSSCBCCSSCCCEEEEC
T ss_pred EEcCCCCEECCCCEEEEEEe
Confidence 34689999999999998876
No 11
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=59.02 E-value=6.3 Score=23.95 Aligned_cols=21 Identities=19% Similarity=0.162 Sum_probs=17.5
Q ss_pred EEEeeCCCeeeccceeeeeec
Q 034705 6 TFLKNTGDFVKKGDEFGYFSF 26 (86)
Q Consensus 6 ~~~~~~g~~v~KGeElG~F~f 26 (86)
.+.+++|..+++||.+..-+-
T Consensus 23 ~~~v~~Gd~V~~G~~l~~ie~ 43 (93)
T 1k8m_A 23 EWYVKEGDTVSQFDSICEVQS 43 (93)
T ss_dssp EECCCTTCEECSSSCCEEEEC
T ss_pred EEEcCCcCEECCCCEEEEEEc
Confidence 445789999999999998775
No 12
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.92 E-value=13 Score=22.81 Aligned_cols=57 Identities=18% Similarity=0.206 Sum_probs=32.9
Q ss_pred EEEeeCCCeeeccceeeeeecCCceEEEEEeC-CceeechhhhhcCcccceeeE-eccccccccch
Q 034705 6 TFLKNTGDFVKKGDEFGYFSFGGSTVICVFEK-DAIQIDKDLLQNSARALETLV-SVGMRMGVSKK 69 (86)
Q Consensus 6 ~~~~~~g~~v~KGeElG~F~fGGSTvVllfe~-~~i~~~~~l~~~~~~~~et~V-~~G~~ig~~~~ 69 (86)
.+.+++|..+++||.+...+---...-+-.+. +.+.- -....+.. | ..|+.|+....
T Consensus 26 ~~~v~~Gd~V~~G~~L~~ie~~K~~~~i~Ap~~G~v~~-i~v~~G~~------Vv~~G~~l~~i~~ 84 (98)
T 2dnc_A 26 KWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAK-IVVEEGSK------NIRLGSLIGLIVE 84 (98)
T ss_dssp EESSCTTCEECTTSEEEEEECSSCEEEEECSSCEEEEE-CSSCTTCC------CEESSCEEEEEEC
T ss_pred EEEcCCCCEeCCCCEEEEEEcccceeEEeCCCCEEEEE-EEeCCCCE------EcCCCCEEEEEec
Confidence 44578999999999999887533332222222 12210 11223333 6 88998887543
No 13
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=55.57 E-value=5.8 Score=22.68 Aligned_cols=19 Identities=21% Similarity=0.211 Sum_probs=16.5
Q ss_pred EeeCCCeeeccceeeeeec
Q 034705 8 LKNTGDFVKKGDEFGYFSF 26 (86)
Q Consensus 8 ~~~~g~~v~KGeElG~F~f 26 (86)
.++.|..++|||.+...+-
T Consensus 22 ~v~~G~~V~~G~~l~~ie~ 40 (77)
T 2l5t_A 22 DVKEGDMVEKDQDLVEVMT 40 (77)
T ss_dssp SCCTTCEECSCCCCCEEES
T ss_pred EeCCCCEECCCCEEEEEEc
Confidence 4689999999999998875
No 14
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=54.69 E-value=15 Score=23.03 Aligned_cols=57 Identities=16% Similarity=0.119 Sum_probs=32.4
Q ss_pred EEEeeCCCeeeccceeeeeecCCceEEEEEeC-CceeechhhhhcCcccceeeEeccccccccc
Q 034705 6 TFLKNTGDFVKKGDEFGYFSFGGSTVICVFEK-DAIQIDKDLLQNSARALETLVSVGMRMGVSK 68 (86)
Q Consensus 6 ~~~~~~g~~v~KGeElG~F~fGGSTvVllfe~-~~i~~~~~l~~~~~~~~et~V~~G~~ig~~~ 68 (86)
.+.++.|..|++||.+..-+---.+.-+--+. +.+.- -....+. +.|..|+.|+...
T Consensus 26 ~~~v~~Gd~V~~G~~L~~iE~~K~~~~i~Ap~~G~V~~-i~v~~G~-----~~V~~G~~l~~i~ 83 (108)
T 2dne_A 26 RWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAK-ILVAEGT-----RDVPIGAIICITV 83 (108)
T ss_dssp ECSSCTTCEECTTSEEEEEECSSCEEEEECSSSEEEEE-CSSCTTC-----CSEETTCEEEEEE
T ss_pred EEEcCCCCEecCCCEEEEEEcCcceeEEeCCCCEEEEE-EEeCCCC-----eeecCCCEEEEEe
Confidence 34478999999999998887422232222222 22221 1122333 1288999888754
No 15
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=54.66 E-value=20 Score=23.38 Aligned_cols=57 Identities=12% Similarity=0.162 Sum_probs=32.5
Q ss_pred EEEeeCCCeeeccceeeeeecCCceEEEEEeC-CceeechhhhhcCcccceeeEeccccccccc
Q 034705 6 TFLKNTGDFVKKGDEFGYFSFGGSTVICVFEK-DAIQIDKDLLQNSARALETLVSVGMRMGVSK 68 (86)
Q Consensus 6 ~~~~~~g~~v~KGeElG~F~fGGSTvVllfe~-~~i~~~~~l~~~~~~~~et~V~~G~~ig~~~ 68 (86)
.|.+++|..|++||.+..-+---.+.-+-.+. +.+. .-....++ +.|..|+.|+...
T Consensus 46 ~~~V~~Gd~V~~Gd~L~~iEa~K~~~~I~Ap~~G~V~-~i~v~~Gd-----~~V~~G~~L~~i~ 103 (128)
T 1y8o_B 46 RWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLA-KILVPEGT-----RDVPLGTPLCIIV 103 (128)
T ss_dssp EECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEE-EESSCTTC-----CSEETTCEEEEEE
T ss_pred EEecCCCCEecCCCEEEEEEcCcceeEEeCCCCeEEE-EEEeCCCC-----eeecCCCEEEEEe
Confidence 45578999999999998877422222222222 2221 00122333 1288999888754
No 16
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=52.39 E-value=15 Score=21.60 Aligned_cols=55 Identities=7% Similarity=0.131 Sum_probs=31.3
Q ss_pred EEEeeCCCeeeccceeeeeecCCceEEEEEeC-CceeechhhhhcCcccceeeEeccccccccc
Q 034705 6 TFLKNTGDFVKKGDEFGYFSFGGSTVICVFEK-DAIQIDKDLLQNSARALETLVSVGMRMGVSK 68 (86)
Q Consensus 6 ~~~~~~g~~v~KGeElG~F~fGGSTvVllfe~-~~i~~~~~l~~~~~~~~et~V~~G~~ig~~~ 68 (86)
.+.++.|..+++||.+..-+---...-+..+. +.+..- +..+.. |..|+.|+...
T Consensus 18 ~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~--~~~G~~------V~~G~~l~~i~ 73 (84)
T 2kcc_A 18 QYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYI--KRPGAV------LEAGCVVARLE 73 (84)
T ss_dssp EESSCTTEEECTTCEEEEEECSSCEEEEECSSSEEEEEC--SCTTCC------CCTTCCCEEEE
T ss_pred EEECCCCCEECCCCEEEEEEecceeEEEECCCCEEEEEE--cCCCCE------ECCCCEEEEEe
Confidence 34578999999999999887422222222222 222211 122333 77888877653
No 17
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}
Probab=50.72 E-value=7.1 Score=23.63 Aligned_cols=20 Identities=25% Similarity=0.307 Sum_probs=17.0
Q ss_pred EEeeCCCeeeccceeeeeec
Q 034705 7 FLKNTGDFVKKGDEFGYFSF 26 (86)
Q Consensus 7 ~~~~~g~~v~KGeElG~F~f 26 (86)
+.+++|..++|||.+...+-
T Consensus 39 ~~v~~Gd~V~~Gq~L~~ie~ 58 (94)
T 2jku_A 39 VSVKPGDAVAEGQEICVIEA 58 (94)
T ss_dssp ECCCTTCCCCTTCCCEEEEC
T ss_pred EECCCCCEEcCCCEEEEEec
Confidence 34689999999999998875
No 18
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=50.67 E-value=4.8 Score=23.74 Aligned_cols=56 Identities=9% Similarity=0.033 Sum_probs=33.8
Q ss_pred EEeeCCCeeeccceeeeeecCCceEEEEEeC-CceeechhhhhcCcccceeeEeccccccccch
Q 034705 7 FLKNTGDFVKKGDEFGYFSFGGSTVICVFEK-DAIQIDKDLLQNSARALETLVSVGMRMGVSKK 69 (86)
Q Consensus 7 ~~~~~g~~v~KGeElG~F~fGGSTvVllfe~-~~i~~~~~l~~~~~~~~et~V~~G~~ig~~~~ 69 (86)
+.++.|..++|||.+...+---...-+-.+- +.+. .-....+.. |..|+.|+....
T Consensus 16 ~~v~~Gd~V~~G~~L~~ie~~k~~~~i~Ap~~G~V~-~~~v~~G~~------V~~G~~l~~i~~ 72 (85)
T 2k7v_A 16 VMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVK-ELKVNVGDK------VKTGSLIMIFEV 72 (85)
T ss_dssp CCCSSSCCCCCSSSCCCCSCCCSEEEEECSSCBCCC-EECSCTTCC------BCTTSEEEEEEC
T ss_pred EEcCCCCEEcCCCEEEEEEccccEEEEECCCCEEEE-EEEeCCCCE------ECCCCEEEEEEc
Confidence 3468999999999999988643333333332 2221 111223444 788888877653
No 19
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=47.88 E-value=9.9 Score=25.80 Aligned_cols=20 Identities=15% Similarity=0.182 Sum_probs=17.6
Q ss_pred EEeeCCCeeeccceeeeeec
Q 034705 7 FLKNTGDFVKKGDEFGYFSF 26 (86)
Q Consensus 7 ~~~~~g~~v~KGeElG~F~f 26 (86)
..++.|+++++||.++.|.+
T Consensus 93 ~~V~~Gd~V~~G~~L~~~d~ 112 (154)
T 2gpr_A 93 SFVTQDQEVNAGDKLVTVDL 112 (154)
T ss_dssp ECCCTTCEECTTCEEEEECH
T ss_pred EEEcCCCEEcCCCEEEEECH
Confidence 45789999999999999984
No 20
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=45.39 E-value=11 Score=25.80 Aligned_cols=19 Identities=32% Similarity=0.457 Sum_probs=17.0
Q ss_pred EeeCCCeeeccceeeeeec
Q 034705 8 LKNTGDFVKKGDEFGYFSF 26 (86)
Q Consensus 8 ~~~~g~~v~KGeElG~F~f 26 (86)
.++.|.++++||.++.|.+
T Consensus 99 ~V~~Gd~V~~G~~L~~~d~ 117 (161)
T 1f3z_A 99 IAEEGQRVKVGDTVIEFDL 117 (161)
T ss_dssp CSCTTCEECTTCEEEEECH
T ss_pred EEeCcCEECCCCEEEEECH
Confidence 5689999999999999984
No 21
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=44.03 E-value=11 Score=25.85 Aligned_cols=19 Identities=21% Similarity=0.342 Sum_probs=17.0
Q ss_pred EeeCCCeeeccceeeeeec
Q 034705 8 LKNTGDFVKKGDEFGYFSF 26 (86)
Q Consensus 8 ~~~~g~~v~KGeElG~F~f 26 (86)
.++.|.++++||.|+.|.+
T Consensus 99 ~V~~Gd~V~~G~~L~~~d~ 117 (162)
T 1ax3_A 99 FVSEGDRVEPGQKLLEVDL 117 (162)
T ss_dssp SCCCCSEECSEEEEEEECH
T ss_pred EEeCCCEEcCCCEEEEECH
Confidence 4689999999999999983
No 22
>3k3s_A Altronate hydrolase; structural genomics, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 2.15A {Shigella flexneri 2a str}
Probab=43.73 E-value=12 Score=24.32 Aligned_cols=48 Identities=15% Similarity=0.318 Sum_probs=28.7
Q ss_pred eeeccceeeeeecCCceEEEEE--eCC-ceeechhhhhcCcccceeeEeccccccccchh
Q 034705 14 FVKKGDEFGYFSFGGSTVICVF--EKD-AIQIDKDLLQNSARALETLVSVGMRMGVSKKE 70 (86)
Q Consensus 14 ~v~KGeElG~F~fGGSTvVllf--e~~-~i~~~~~l~~~~~~~~et~V~~G~~ig~~~~~ 70 (86)
.+++|+++- ++|.++.+.- +.+ ++.+ .++..+.. -+|+|+.||+++..
T Consensus 39 ~L~aG~~v~---~~g~~v~l~~dIP~GHKiAl-~dI~~Ge~-----ViKYG~~IG~At~d 89 (105)
T 3k3s_A 39 DLAEGTEVS---VDNQTVTLRQDVARGHKFAL-TDIAKGAN-----VIKYGLPIGYALAD 89 (105)
T ss_dssp CBCTTCEEE---ETTEEEECSSCBCTTCEEES-SCBCTTCE-----EEETTEEEEEESSC
T ss_pred ccCCCCEEe---eCCcEEEECccCCCCCEEEE-cccCCCCe-----EEECCceeEEEccc
Confidence 478898874 4566554421 112 2322 24555554 69999999998754
No 23
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}
Probab=35.05 E-value=33 Score=25.37 Aligned_cols=52 Identities=17% Similarity=0.220 Sum_probs=31.4
Q ss_pred eeCCCeeeccceeee----eecCCceEEEEEeCCceeechhhhhcCcccceeeEeccccccccc
Q 034705 9 KNTGDFVKKGDEFGY----FSFGGSTVICVFEKDAIQIDKDLLQNSARALETLVSVGMRMGVSK 68 (86)
Q Consensus 9 ~~~g~~v~KGeElG~----F~fGGSTvVllfe~~~i~~~~~l~~~~~~~~et~V~~G~~ig~~~ 68 (86)
++.|..|+|||.+|+ |.+|.-..-+..+.+-+-+. ...+. .|.-|+.|.+..
T Consensus 282 ~~~g~~V~~G~~La~i~d~~~~g~~~~~v~Ap~dG~v~~--~~~~~------~V~~Gd~l~~ia 337 (354)
T 3cdx_A 282 HYVGEEVRTGETAGWIHFVEDVDTAPLELLYRRDGIVWF--GAGPG------RVTRGDAVAVVM 337 (354)
T ss_dssp CCTTCEECTTSEEEEEECTTSSSCCCEEEECCSCEEEEE--EECSS------EECTTCEEEEEE
T ss_pred CCCCCEeCCCCEEEEEECCCCCCCeeEEEEcCCCeEEEE--EeCCC------ccCCCCEEEEEe
Confidence 578999999999999 33453334444444433332 11222 378888888754
No 24
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.03 E-value=22 Score=21.45 Aligned_cols=55 Identities=7% Similarity=0.123 Sum_probs=32.1
Q ss_pred EEEeeCCCeeeccceeeeeecCCceEEEEEeC-CceeechhhhhcCcccceeeEeccccccccc
Q 034705 6 TFLKNTGDFVKKGDEFGYFSFGGSTVICVFEK-DAIQIDKDLLQNSARALETLVSVGMRMGVSK 68 (86)
Q Consensus 6 ~~~~~~g~~v~KGeElG~F~fGGSTvVllfe~-~~i~~~~~l~~~~~~~~et~V~~G~~ig~~~ 68 (86)
.+.+++|..++|||.+...+---...-+-.+. +.+. .....+.. |..|+.|+...
T Consensus 30 ~~~v~~Gd~V~~Gq~L~~le~~k~~~~i~Ap~~G~V~--~~v~~G~~------V~~G~~l~~i~ 85 (100)
T 2dn8_A 30 QYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVK--YIKRPGAV------LEAGCVVARLE 85 (100)
T ss_dssp EESSCTTEEECTTCEEEEEEETTEEEEEECSSSEEEE--ECSCTTCE------ECSSCEEEEEC
T ss_pred EEEcCCcCEECCCCEEEEEEecceEEEEEcCCCEEEE--EEeCCCCE------ECCCCEEEEEE
Confidence 34468999999999999988422222222221 2233 11233443 88888887754
No 25
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=31.82 E-value=31 Score=20.97 Aligned_cols=20 Identities=35% Similarity=0.313 Sum_probs=16.7
Q ss_pred EEeeCCCeeeccceeeeeec
Q 034705 7 FLKNTGDFVKKGDEFGYFSF 26 (86)
Q Consensus 7 ~~~~~g~~v~KGeElG~F~f 26 (86)
+.+++|..|+|||-+..+.-
T Consensus 15 v~v~~G~~V~~Gq~L~~ld~ 34 (116)
T 2k32_A 15 KLFKAGDKVKKGQTLFIIEQ 34 (116)
T ss_dssp ECSCTTSEECTTCEEEEEEC
T ss_pred EECCCcCEECCCCEEEEECH
Confidence 34689999999999988764
No 26
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=30.57 E-value=14 Score=24.09 Aligned_cols=35 Identities=20% Similarity=0.445 Sum_probs=24.8
Q ss_pred eeecCCceEEEEEeCCceeechhhhhcCcccceeeEecccccc
Q 034705 23 YFSFGGSTVICVFEKDAIQIDKDLLQNSARALETLVSVGMRMG 65 (86)
Q Consensus 23 ~F~fGGSTvVllfe~~~i~~~~~l~~~~~~~~et~V~~G~~ig 65 (86)
.|+|+|=+-|+-|+.+ ++|++ +...-. ..+|+.+-
T Consensus 12 KfE~~GEkRIi~f~RP-v~f~e-L~~Kv~------~~fGq~ld 46 (103)
T 2cu1_A 12 KFEHRGEKRILQFPRP-VKLED-LRSKAK------IAFGQSMD 46 (103)
T ss_dssp EEEETTEEEEEEEESS-CCHHH-HHHHHH------HHHSSCEE
T ss_pred EEEecCeEEEEeccCC-ccHHH-HHHHHH------HHhCCeee
Confidence 4999999999999988 77864 544433 34555554
No 27
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=29.67 E-value=48 Score=29.17 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=19.9
Q ss_pred CcccE-EEEeeCCCeeeccceeeeee
Q 034705 1 MVGSI-TFLKNTGDFVKKGDEFGYFS 25 (86)
Q Consensus 1 ~VgsI-~~~~~~g~~v~KGeElG~F~ 25 (86)
|.|+| .+.+++|..|++||.+..-+
T Consensus 1174 ~~G~v~~~~v~~Gd~V~~g~~l~~iE 1199 (1236)
T 3va7_A 1174 YTGRFWKPVAAVGDHVEAGDGVIIIE 1199 (1236)
T ss_dssp SCEEEEEESSCTTCEECSSCEEEEEE
T ss_pred CcEEEEEEEcCCCCEECCCCEEEEEE
Confidence 45666 56689999999999888766
No 28
>3it5_A Protease LASA; metallopeptidase, beta-protein, cell membrane, cell out membrane, hydrolase, membrane, metal-binding; 2.00A {Pseudomonas aeruginosa} PDB: 3it7_A*
Probab=28.63 E-value=24 Score=24.22 Aligned_cols=17 Identities=18% Similarity=0.446 Sum_probs=14.9
Q ss_pred eeCCCeeeccceeeeee
Q 034705 9 KNTGDFVKKGDEFGYFS 25 (86)
Q Consensus 9 ~~~g~~v~KGeElG~F~ 25 (86)
++.|.+|++||.+|+--
T Consensus 87 V~~G~~V~~Gq~IG~vG 103 (182)
T 3it5_A 87 VSNGQQVSADTKLGVYA 103 (182)
T ss_dssp CCTTCEECTTCEEEEEC
T ss_pred cCCCCEEcCCCEEEeec
Confidence 58999999999999753
No 29
>2hsi_A Putative peptidase M23; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.90A {Pseudomonas aeruginosa PAO1}
Probab=28.61 E-value=25 Score=25.79 Aligned_cols=16 Identities=25% Similarity=0.324 Sum_probs=14.2
Q ss_pred EeeCCCeeeccceeee
Q 034705 8 LKNTGDFVKKGDEFGY 23 (86)
Q Consensus 8 ~~~~g~~v~KGeElG~ 23 (86)
.++.|.+|++||.+|+
T Consensus 233 ~V~~G~~V~~Gq~IG~ 248 (282)
T 2hsi_A 233 DVKLGQQVPRGGVLGK 248 (282)
T ss_dssp CSCTTCEECTTCEEEE
T ss_pred ccCCcCEECCCCEEEE
Confidence 4689999999999995
No 30
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=27.14 E-value=62 Score=26.24 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=19.6
Q ss_pred CcccE-EEEeeCCCeeeccceeeeee
Q 034705 1 MVGSI-TFLKNTGDFVKKGDEFGYFS 25 (86)
Q Consensus 1 ~VgsI-~~~~~~g~~v~KGeElG~F~ 25 (86)
|-|.| .+.+++|..|+|||.+..-+
T Consensus 619 ~~G~v~~~~v~~Gd~V~~g~~l~~iE 644 (681)
T 3n6r_A 619 MPGLIVKVDVEVGQEVQEGQALCTIE 644 (681)
T ss_dssp SCEEEEEECCCTTCEECTTCEEEEEE
T ss_pred CcEEEEEEEeCCCCEEcCCCEEEEEE
Confidence 34555 45689999999999998766
No 31
>1qwy_A Peptidoglycan hydrolase; LYTM lysostaphin metalloprotease asparagine switch; 1.30A {Staphylococcus aureus subsp} SCOP: b.84.3.2 PDB: 2b0p_A 2b13_A* 2b44_A
Probab=24.89 E-value=33 Score=25.70 Aligned_cols=17 Identities=41% Similarity=0.632 Sum_probs=14.7
Q ss_pred EeeCCCeeeccceeeee
Q 034705 8 LKNTGDFVKKGDEFGYF 24 (86)
Q Consensus 8 ~~~~g~~v~KGeElG~F 24 (86)
.+++|.+|++||.+|+=
T Consensus 240 ~Vk~Gq~V~~GqvIG~v 256 (291)
T 1qwy_A 240 TVSAGDKVKAGDQIAYS 256 (291)
T ss_dssp CCCTTCEECTTCEEEEC
T ss_pred ccCCcCEECCCCEEEEE
Confidence 46899999999999953
No 32
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=24.78 E-value=37 Score=21.82 Aligned_cols=8 Identities=63% Similarity=1.061 Sum_probs=3.8
Q ss_pred ecCCceEE
Q 034705 25 SFGGSTVI 32 (86)
Q Consensus 25 ~fGGSTvV 32 (86)
+||+||-.
T Consensus 118 ~~G~str~ 125 (130)
T 4h87_A 118 RFGGSTRL 125 (130)
T ss_dssp EETTCSEE
T ss_pred EECCceEE
Confidence 45555543
No 33
>3tuf_B Stage II sporulation protein Q; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_B
Probab=23.51 E-value=35 Score=24.66 Aligned_cols=17 Identities=29% Similarity=0.302 Sum_probs=14.8
Q ss_pred EeeCCCeeeccceeeee
Q 034705 8 LKNTGDFVKKGDEFGYF 24 (86)
Q Consensus 8 ~~~~g~~v~KGeElG~F 24 (86)
.++.|.+|++||-||+=
T Consensus 136 ~Vk~Gd~V~~Gq~IG~v 152 (245)
T 3tuf_B 136 SVEQGDKVKQNQVIGKS 152 (245)
T ss_dssp SCCTTCEECTTCEEEEC
T ss_pred ccCCCCEECCCCEEEEe
Confidence 36899999999999974
No 34
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*
Probab=22.82 E-value=35 Score=25.67 Aligned_cols=54 Identities=19% Similarity=0.305 Sum_probs=31.9
Q ss_pred EEeeCCCeeeccceeeeee----cC-CceE-EEEEeCCceeechhhhhcCcccceeeEeccccccccc
Q 034705 7 FLKNTGDFVKKGDEFGYFS----FG-GSTV-ICVFEKDAIQIDKDLLQNSARALETLVSVGMRMGVSK 68 (86)
Q Consensus 7 ~~~~~g~~v~KGeElG~F~----fG-GSTv-Vllfe~~~i~~~~~l~~~~~~~~et~V~~G~~ig~~~ 68 (86)
..++.|..|+|||.+|+-. || |-.. -+..+.+-+-+.. .... .|..|+.|++..
T Consensus 303 ~~v~lGd~V~kG~~la~I~d~~~~g~g~~~~~v~Ap~dGiVi~~--~~~p------~V~~G~~l~~i~ 362 (368)
T 3fmc_A 303 YLGKVGVPMKATDPLVNLLRLDLYGTGEELTVLRLPEDGVPILH--FASA------SVHQGTELYKVM 362 (368)
T ss_dssp ECSCTTCCBCTTCEEEEEECGGGTTSSCSEEEEECSSSEEEEEE--CSSS------EECTTCEEEEEE
T ss_pred EeCCCCCEeCCCCEEEEEEcCCCCCCCCeeEEEEcCCCEEEEEE--eCCC------ccCCCCEEEEEe
Confidence 3468999999999999753 43 2233 3333333233331 1122 388888887754
No 35
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}
Probab=22.44 E-value=39 Score=25.13 Aligned_cols=17 Identities=29% Similarity=0.587 Sum_probs=14.6
Q ss_pred EeeCCCeeeccceeeee
Q 034705 8 LKNTGDFVKKGDEFGYF 24 (86)
Q Consensus 8 ~~~~g~~v~KGeElG~F 24 (86)
.++.|.+|++||.+|+-
T Consensus 285 ~v~~G~~V~~G~~Ig~~ 301 (361)
T 2gu1_A 285 LVKKGQLVKRGQKIALA 301 (361)
T ss_dssp CCCTTCEECTTCEEEEC
T ss_pred ccCCcCEECCCCEEEEE
Confidence 46899999999999953
No 36
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=22.07 E-value=15 Score=21.12 Aligned_cols=20 Identities=20% Similarity=0.253 Sum_probs=16.4
Q ss_pred EEeeCCCeeeccceeeeeec
Q 034705 7 FLKNTGDFVKKGDEFGYFSF 26 (86)
Q Consensus 7 ~~~~~g~~v~KGeElG~F~f 26 (86)
+.+++|..+++||.+..-+-
T Consensus 22 ~~v~~Gd~V~~G~~l~~ie~ 41 (80)
T 1pmr_A 22 WHKKPGDAVVRDEVLVEIET 41 (80)
T ss_dssp CCCCTTCCBSSSCCBCBCCS
T ss_pred EECCCcCEECCCCEEEEEEc
Confidence 34689999999999988764
No 37
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=21.08 E-value=93 Score=27.03 Aligned_cols=61 Identities=13% Similarity=0.058 Sum_probs=34.1
Q ss_pred CcccE-EEEeeCCCeeeccceeeeeecCCceEEEEEeC-CceeechhhhhcCcccceeeEeccccccccc
Q 034705 1 MVGSI-TFLKNTGDFVKKGDEFGYFSFGGSTVICVFEK-DAIQIDKDLLQNSARALETLVSVGMRMGVSK 68 (86)
Q Consensus 1 ~VgsI-~~~~~~g~~v~KGeElG~F~fGGSTvVllfe~-~~i~~~~~l~~~~~~~~et~V~~G~~ig~~~ 68 (86)
|-|.| .+.+++|..|+|||.+..-+=-=...-+-.+. |.+. .-....++. |..|+.|....
T Consensus 1084 ~~G~v~~~~v~~Gd~V~~G~~l~~ieamK~~~~i~ap~~G~v~-~i~v~~G~~------V~~g~~l~~i~ 1146 (1150)
T 3hbl_A 1084 MPGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIK-QVTVNNGDT------IATGDLLIEIE 1146 (1150)
T ss_dssp SSEEEEEECCCTTCEECTTCEEEEEESSSCEEEEECSSSEEEE-EECCCTTCE------ECTTBEEEEEC
T ss_pred ceEEEEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEE-EEEeCCCCE------eCCCCEEEEEe
Confidence 34555 56689999999999888776311222222221 2221 001233444 88888887653
No 38
>3csq_A Morphogenesis protein 1; hydrolase, infection, late protein; 1.80A {Bacteriophage phi-29}
Probab=20.88 E-value=39 Score=24.99 Aligned_cols=15 Identities=40% Similarity=0.565 Sum_probs=13.7
Q ss_pred eeCCCeeeccceeee
Q 034705 9 KNTGDFVKKGDEFGY 23 (86)
Q Consensus 9 ~~~g~~v~KGeElG~ 23 (86)
+++|..|++||-+|+
T Consensus 253 V~~G~~V~~Gq~Ig~ 267 (334)
T 3csq_A 253 FDVGKKLKKGDLMGH 267 (334)
T ss_dssp CCTTCEECTTSEEEE
T ss_pred CCCcCEECCCCEEEe
Confidence 689999999999994
No 39
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=20.22 E-value=48 Score=23.29 Aligned_cols=19 Identities=32% Similarity=0.497 Sum_probs=16.8
Q ss_pred EeeCCCeeeccceeeeeec
Q 034705 8 LKNTGDFVKKGDEFGYFSF 26 (86)
Q Consensus 8 ~~~~g~~v~KGeElG~F~f 26 (86)
.++.|..|++||.|-.|.+
T Consensus 121 ~V~~Gd~Vk~Gd~L~~fD~ 139 (183)
T 3our_B 121 IAEEGQTVKAGDTVIEFDL 139 (183)
T ss_dssp CSCTTCEECTTCEEEEECH
T ss_pred EEeCcCEEcCCCEEEEECH
Confidence 4689999999999999975
No 40
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}
Probab=20.20 E-value=47 Score=24.42 Aligned_cols=52 Identities=17% Similarity=0.258 Sum_probs=30.0
Q ss_pred EeeCCCeeeccceeeee----ecCCce-EEEEEeCCceeechhhhhcCcccceeeEeccccccccc
Q 034705 8 LKNTGDFVKKGDEFGYF----SFGGST-VICVFEKDAIQIDKDLLQNSARALETLVSVGMRMGVSK 68 (86)
Q Consensus 8 ~~~~g~~v~KGeElG~F----~fGGST-vVllfe~~~i~~~~~l~~~~~~~~et~V~~G~~ig~~~ 68 (86)
.++.|.+|+|||.+|+- .| |.. .-+..+.+-+-+.. .... .|..|+.|.+..
T Consensus 271 ~v~~Gd~V~~G~~la~I~dp~~~-g~~~~~v~Ap~dGiVi~~---~~~~-----~V~~G~~l~~Ia 327 (331)
T 3na6_A 271 MIDLGEPVQEGDLVARVWSPDRT-GEAPVEYRARRSGVLISR---HFPG-----MIKSGDCAAVIG 327 (331)
T ss_dssp SSCTTCEECTTCEEEEEECSSCS-SCCCEEEECSSSEEEEEE---ECSS-----EECTTCEEEEEE
T ss_pred cCCCCCEEcCCCEEEEEEcCccC-CCeeEEEEcCCCEEEEEE---eCCC-----ccCCCCEEEEEe
Confidence 36899999999999993 36 432 23333333232321 1111 377888877654
Done!