BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034707
(86 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EQK|A Chain A, Solution Structure Of Oryzacystatin-I, A Cysteine
Proteinase Inhibitor Of The Rice, Oryza Sativa L.
Japonica
Length = 102
Score = 90.9 bits (224), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/94 (53%), Positives = 58/94 (61%), Gaps = 15/94 (15%)
Query: 2 ATVGGVREVEATANNQEIVNLARFAVDEHNKK--------------QQVVSGTLYDITLE 47
+GGV V N+ +V+LARFAV EHNKK QQVV+GTLY T+E
Sbjct: 7 PVLGGVEPV-GNENDLHLVDLARFAVTEHNKKANSLLEFEKLVSVKQQVVAGTLYYFTIE 65
Query: 48 AVEGGQKKLFEAKVWEKPWMQFKELKEFNTVAQS 81
EG KKL+EAKVWEKPWM FKEL+EF V S
Sbjct: 66 VKEGDAKKLYEAKVWEKPWMDFKELQEFKPVDAS 99
>pdb|3IMA|B Chain B, Complex Strcuture Of Tarocystatin And Papain
pdb|3IMA|D Chain D, Complex Strcuture Of Tarocystatin And Papain
Length = 91
Score = 85.1 bits (209), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 60/91 (65%), Gaps = 14/91 (15%)
Query: 2 ATVGGVREVEATANNQEIVNLARFAVDEHNKK--------------QQVVSGTLYDITLE 47
A +GG+ +VE N+ E+ LARFAVDEHNKK QQVVSG ++ +T+E
Sbjct: 1 ALMGGIVDVEGAQNSAEVEELARFAVDEHNKKENALLQFSRLVKAKQQVVSGIMHHLTVE 60
Query: 48 AVEGGQKKLFEAKVWEKPWMQFKELKEFNTV 78
+EGG+KK++EAKVW + W+ K+L EF+ +
Sbjct: 61 VIEGGKKKVYEAKVWVQAWLNSKKLHEFSPI 91
>pdb|3UL5|A Chain A, Saccharum Officinarum Canecystatin-1 In Space Group C2221
pdb|3UL5|B Chain B, Saccharum Officinarum Canecystatin-1 In Space Group C2221
pdb|3UL5|C Chain C, Saccharum Officinarum Canecystatin-1 In Space Group C2221
pdb|3UL5|D Chain D, Saccharum Officinarum Canecystatin-1 In Space Group C2221
pdb|3UL6|A Chain A, Saccharum Officinarum Canecystatin-1 In Space Group P6422
pdb|3UL6|B Chain B, Saccharum Officinarum Canecystatin-1 In Space Group P6422
Length = 139
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 55/97 (56%), Gaps = 16/97 (16%)
Query: 1 MATVGGVREVEATA-NNQEIVNLARFAVDEHNKK--------------QQVVSGTLYDIT 45
+ VG VR+ A N+ E + LARFAV EHN K QVV+GT++ T
Sbjct: 43 VGMVGDVRDAPAGHENDLEAIELARFAVAEHNSKTNAMLEFERLVKVRHQVVAGTMHHFT 102
Query: 46 LEAVE-GGQKKLFEAKVWEKPWMQFKELKEFNTVAQS 81
++ E GG KKL+EAKVWEK W FK+L+ F V +
Sbjct: 103 VQVKEAGGGKKLYEAKVWEKVWENFKQLQSFQPVGDA 139
>pdb|2L4V|A Chain A, Three Dimensional Structure Of Pineapple Cystatin
Length = 135
Score = 65.1 bits (157), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 58/97 (59%), Gaps = 19/97 (19%)
Query: 2 ATVGGVREVEATANNQ---EIVNLARFAVDEHNKK--------------QQVVSGTLYDI 44
+GG+ +A NN+ + +LARFAV E+N K +QVVSG ++ +
Sbjct: 41 PIMGGI--YDAPLNNENGFDKEDLARFAVREYNNKNNALLEFVRVVKAKEQVVSGMMHYL 98
Query: 45 TLEAVEGGQKKLFEAKVWEKPWMQFKELKEFNTVAQS 81
T+E + G+KKL+EAKVWE+ WM F++L+EF + +
Sbjct: 99 TVEVNDAGKKKLYEAKVWEQVWMNFRQLQEFTYLGDA 135
>pdb|2W9P|A Chain A, Crystal Structure Of Potato Multicystatin
pdb|2W9P|B Chain B, Crystal Structure Of Potato Multicystatin
pdb|2W9P|C Chain C, Crystal Structure Of Potato Multicystatin
pdb|2W9P|D Chain D, Crystal Structure Of Potato Multicystatin
pdb|2W9P|E Chain E, Crystal Structure Of Potato Multicystatin
pdb|2W9P|F Chain F, Crystal Structure Of Potato Multicystatin
pdb|2W9P|G Chain G, Crystal Structure Of Potato Multicystatin
pdb|2W9P|H Chain H, Crystal Structure Of Potato Multicystatin
pdb|2W9P|I Chain I, Crystal Structure Of Potato Multicystatin
pdb|2W9P|J Chain J, Crystal Structure Of Potato Multicystatin
pdb|2W9P|K Chain K, Crystal Structure Of Potato Multicystatin
pdb|2W9P|L Chain L, Crystal Structure Of Potato Multicystatin
pdb|2W9P|M Chain M, Crystal Structure Of Potato Multicystatin
pdb|2W9P|N Chain N, Crystal Structure Of Potato Multicystatin
pdb|2W9Q|A Chain A, Crystal Structure Of Potato Multicystatin-P212121
Length = 87
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 47/81 (58%), Gaps = 15/81 (18%)
Query: 13 TANNQEIVNLARFAVDEHNKKQ--------------QVVSGTLYDITLEAVE-GGQKKLF 57
NN + LARFA+ ++NKKQ QVV+G +Y ITL A + G+KK++
Sbjct: 7 NPNNTKFQELARFAIQDYNKKQNAHLEFVENLNVKEQVVAGIMYYITLAATDDAGKKKIY 66
Query: 58 EAKVWEKPWMQFKELKEFNTV 78
+AK+W K W FK++ EF V
Sbjct: 67 KAKIWVKEWEDFKKVVEFKLV 87
>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|B Chain B, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|C Chain C, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|D Chain D, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
Length = 327
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 17 QEIVNLARFAVDEHNKKQ--QVVSGTLYD 43
+E+VNLA +AV+ HN Q Q+V L D
Sbjct: 247 REMVNLAEWAVESHNNGQLEQIVDPNLAD 275
>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By
Bacterial Effector Protein Avrpto
Length = 321
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 17 QEIVNLARFAVDEHNKKQ--QVVSGTLYD 43
+E+VNLA +AV+ HN Q Q+V L D
Sbjct: 247 REMVNLAEWAVESHNNGQLEQIVDPNLAD 275
>pdb|1XKY|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase Dapa-2
(Ba3935) From Bacillus Anthracis At 1.94a Resolution.
pdb|1XKY|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase Dapa-2
(Ba3935) From Bacillus Anthracis At 1.94a Resolution.
pdb|1XKY|C Chain C, Crystal Structure Of Dihydrodipicolinate Synthase Dapa-2
(Ba3935) From Bacillus Anthracis At 1.94a Resolution.
pdb|1XKY|D Chain D, Crystal Structure Of Dihydrodipicolinate Synthase Dapa-2
(Ba3935) From Bacillus Anthracis At 1.94a Resolution.
pdb|1XL9|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase Dapa-2
(Ba3935) From Bacillus Anthracis.
pdb|1XL9|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase Dapa-2
(Ba3935) From Bacillus Anthracis.
pdb|1XL9|C Chain C, Crystal Structure Of Dihydrodipicolinate Synthase Dapa-2
(Ba3935) From Bacillus Anthracis.
pdb|1XL9|D Chain D, Crystal Structure Of Dihydrodipicolinate Synthase Dapa-2
(Ba3935) From Bacillus Anthracis
Length = 301
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 13/84 (15%)
Query: 4 VGGVREVEATANNQEIVNLARFAVDEHNKKQQVVSGT-------LYDITLEAVE-GGQKK 55
VGG T ++E V L R V +K+ V++GT D+T +A E G
Sbjct: 52 VGGTTGESPTLTSEEKVALYRHVVSVVDKRVPVIAGTGSNNTHASIDLTKKATEVGVDAV 111
Query: 56 LFEAKVWEKP-----WMQFKELKE 74
+ A + KP + FK + E
Sbjct: 112 MLVAPYYNKPSQEGMYQHFKAIAE 135
>pdb|1NR9|A Chain A, Crystal Structure Of Escherichia Coli 1262 (Apc5008),
Putative Isomerase
pdb|1NR9|B Chain B, Crystal Structure Of Escherichia Coli 1262 (Apc5008),
Putative Isomerase
pdb|1NR9|C Chain C, Crystal Structure Of Escherichia Coli 1262 (Apc5008),
Putative Isomerase
pdb|1NR9|D Chain D, Crystal Structure Of Escherichia Coli 1262 (Apc5008),
Putative Isomerase
Length = 223
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 24 RFAVDEHNKKQQVVSGTLYDITLEAVEGGQKKLFEAKVWEK 64
R A +EH +K G D+TL V+G KK + WEK
Sbjct: 84 RQATEEHVRKAIAGYGVALDLTLRDVQGKXKK--AGQPWEK 122
>pdb|3HIJ|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From
Bacillus Anthracis In Complex With Its Substrate,
Pyruvate
pdb|3HIJ|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase From
Bacillus Anthracis In Complex With Its Substrate,
Pyruvate
pdb|3HIJ|C Chain C, Crystal Structure Of Dihydrodipicolinate Synthase From
Bacillus Anthracis In Complex With Its Substrate,
Pyruvate
pdb|3HIJ|D Chain D, Crystal Structure Of Dihydrodipicolinate Synthase From
Bacillus Anthracis In Complex With Its Substrate,
Pyruvate
Length = 292
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 13/84 (15%)
Query: 4 VGGVREVEATANNQEIVNLARFAVDEHNKKQQVVSGT-------LYDITLEAVE-GGQKK 55
VGG T ++E V L R V +K+ V++GT D+T +A E G
Sbjct: 43 VGGTTGESPTLTSEEKVALYRHVVSVVDKRVPVIAGTGSNNTHASIDLTKKATEVGVDAV 102
Query: 56 LFEAKVWEKP-----WMQFKELKE 74
+ A + KP + FK + E
Sbjct: 103 MLVAPYYNKPSQEGMYQHFKAIAE 126
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.125 0.347
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,335,181
Number of Sequences: 62578
Number of extensions: 73129
Number of successful extensions: 205
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 191
Number of HSP's gapped (non-prelim): 17
length of query: 86
length of database: 14,973,337
effective HSP length: 54
effective length of query: 32
effective length of database: 11,594,125
effective search space: 371012000
effective search space used: 371012000
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)