Query 034707
Match_columns 86
No_of_seqs 102 out of 689
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 05:39:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034707.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034707hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00043 CY Cystatin-like do 99.8 1.1E-20 2.3E-25 118.9 7.5 73 3-77 2-106 (107)
2 cd00042 CY Substituted updates 99.8 2.4E-20 5.1E-25 116.8 8.4 71 5-77 1-105 (105)
3 PF00031 Cystatin: Cystatin do 99.7 1E-17 2.2E-22 102.9 6.6 60 5-66 1-94 (94)
4 PF07430 PP1: Phloem filament 99.5 3.2E-13 7E-18 93.8 7.8 71 4-75 114-202 (202)
5 PF07430 PP1: Phloem filament 99.1 1.3E-10 2.8E-15 80.8 4.1 76 2-78 5-99 (202)
6 TIGR01638 Atha_cystat_rel Arab 97.2 0.00059 1.3E-08 42.7 3.7 50 14-63 10-76 (92)
7 PF06907 Latexin: Latexin; In 79.9 13 0.00028 26.8 6.8 51 13-63 3-75 (220)
8 PF11030 Nucleocapsid-N: Nucle 40.2 40 0.00086 22.6 3.0 32 17-51 116-149 (167)
9 PRK15344 type III secretion sy 39.4 41 0.00088 20.1 2.6 20 13-32 29-48 (71)
10 TIGR02105 III_needle type III 37.3 44 0.00096 19.8 2.6 21 13-33 30-50 (72)
11 KOG2650 Zinc carboxypeptidase 36.2 50 0.0011 25.8 3.4 45 6-51 320-388 (418)
12 PF02995 DUF229: Protein of un 34.2 39 0.00083 26.6 2.5 29 3-33 450-478 (497)
13 smart00773 WGR Proposed nuclei 29.6 1.2E+02 0.0026 17.6 6.2 44 38-81 2-47 (84)
14 cd06382 PBP1_iGluR_Kainate N-t 29.0 1.5E+02 0.0032 21.0 4.7 43 4-49 2-44 (327)
15 cd05881 Ig1_Necl-2 First (N-te 28.8 90 0.002 19.0 3.1 28 38-65 58-85 (95)
16 cd02854 Glycogen_branching_enz 28.2 66 0.0014 19.7 2.4 16 36-51 57-72 (99)
17 PF14730 DUF4468: Domain of un 27.0 1.4E+02 0.0031 17.7 3.8 12 40-51 66-77 (91)
18 PF05753 TRAP_beta: Translocon 26.6 1.7E+02 0.0037 20.1 4.4 37 36-72 34-71 (181)
19 cd06385 PBP1_NPR_A Ligand-bind 22.7 1.6E+02 0.0034 21.7 4.0 44 5-50 3-49 (405)
20 PF14054 DUF4249: Domain of un 22.4 2.3E+02 0.0049 19.9 4.6 17 35-51 95-111 (298)
21 PF07849 DUF1641: Protein of u 22.3 97 0.0021 16.2 2.1 14 14-27 20-33 (42)
22 PF13028 DUF3889: Protein of u 21.9 2.2E+02 0.0047 17.9 7.7 62 14-75 18-94 (97)
23 PF12733 Cadherin-like: Cadher 21.8 1.7E+02 0.0038 16.7 3.7 28 36-63 58-87 (88)
24 smart00678 WWE Domain in Delte 21.1 1.7E+02 0.0037 16.4 3.7 40 4-48 9-49 (73)
25 cd06368 PBP1_iGluR_non_NMDA_li 20.9 2E+02 0.0044 20.1 4.1 30 4-37 2-31 (324)
26 PF00041 fn3: Fibronectin type 20.5 1.4E+02 0.0029 16.2 2.6 18 34-51 61-78 (85)
27 PF01448 ELM2: ELM2 domain; I 20.1 1E+02 0.0022 16.6 1.9 21 7-28 33-53 (55)
No 1
>smart00043 CY Cystatin-like domain. Cystatins are a family of cysteine protease inhibitors that occur mainly as single domain proteins. However some extracellular proteins such as kininogen, His-rich glycoprotein and fetuin also contain these domains.
Probab=99.84 E-value=1.1e-20 Score=118.87 Aligned_cols=73 Identities=47% Similarity=0.687 Sum_probs=66.2
Q ss_pred ccccceeccCCCCCHHHHHHHHHHHHHhccc----------------CceeeeeEEEEEEEEecCCce------------
Q 034707 3 TVGGVREVEATANNQEIVNLARFAVDEHNKK----------------QQVVSGTLYDITLEAVEGGQK------------ 54 (86)
Q Consensus 3 ~~GG~~~i~~~~~d~~Vq~la~~Av~~~n~~----------------~QVVaG~nY~l~v~~~~~~~~------------ 54 (86)
++|||.++ +.+||+++++++||+.+||++ +|||+|++|+|++++.++.-.
T Consensus 2 ~~Gg~~~~--~~~d~~~~~~~~~a~~~~N~~~~~~~~~~~~~v~~a~~QvvaG~~y~l~~~v~~t~C~k~~~~~~~C~~~ 79 (107)
T smart00043 2 CLGGPSDV--PPNDPEVQEAADFAVAEYNKKSNDKYELRVIKVVSAKSQVVAGTNYYLKVEVGETNCKKLSVDLENCPFL 79 (107)
T ss_pred CCCCCccC--CCCCHHHHHHHHHHHHHHHHhcccchhhhhhhhheeeeeeecceEEEEEEEEEeceeccCCcccccCCCC
Confidence 57999999 789999999999999999987 999999999999999875221
Q ss_pred ----EEEEEEEEeccCCCceeEEEEEe
Q 034707 55 ----KLFEAKVWEKPWMQFKELKEFNT 77 (86)
Q Consensus 55 ----~~y~a~Vw~~pw~n~~~L~sf~~ 77 (86)
..|.++||.+||++..+|++|+|
T Consensus 80 ~~~~~~C~~~V~~~pw~~~~~~~~~~C 106 (107)
T smart00043 80 DQGEKFCTAKVWEKPWENKIKLVEFKC 106 (107)
T ss_pred CCCccEEEEEEEecCCCCccCccceec
Confidence 48999999999999999999986
No 2
>cd00042 CY Substituted updates: Jan 30, 2002
Probab=99.83 E-value=2.4e-20 Score=116.82 Aligned_cols=71 Identities=56% Similarity=0.870 Sum_probs=66.1
Q ss_pred ccceeccCCCCCHHHHHHHHHHHHHhccc---------------CceeeeeEEEEEEEEecC------------------
Q 034707 5 GGVREVEATANNQEIVNLARFAVDEHNKK---------------QQVVSGTLYDITLEAVEG------------------ 51 (86)
Q Consensus 5 GG~~~i~~~~~d~~Vq~la~~Av~~~n~~---------------~QVVaG~nY~l~v~~~~~------------------ 51 (86)
|||.++ +++||+++++++||+.+||+. +|||+|++|+|++++.++
T Consensus 1 gg~~~~--~~~d~~~~~~~~~a~~~~N~~~~~~~~~~~~i~~~~~QvvaG~~y~i~~~~~~t~C~k~~~~~~~~~c~~~~ 78 (105)
T cd00042 1 GGPSDI--PANDPEVQELADFAVAEYNKKSNDKYLEFFKVLSAKSQVVAGTNYYITVEAGDTNCKKSSVPLDCPDCKLLE 78 (105)
T ss_pred CCCccC--CCCCHHHHHHHHHHHHHHHhhcCccceeEEEEEEEEEEEEeeeEEEEEEEEecccccccCcccccccccccc
Confidence 899988 799999999999999999887 899999999999999874
Q ss_pred -CceEEEEEEEEeccCCCceeEEEEEe
Q 034707 52 -GQKKLFEAKVWEKPWMQFKELKEFNT 77 (86)
Q Consensus 52 -~~~~~y~a~Vw~~pw~n~~~L~sf~~ 77 (86)
+....|.+.||++||++.++|++|.|
T Consensus 79 ~~~~~~C~~~V~~~pw~~~~~l~~~~C 105 (105)
T cd00042 79 EGKKKFCTAKVWEKPWENFKELLSFKC 105 (105)
T ss_pred cCCCEEEEEEEEecCCCCceeeeeccC
Confidence 56889999999999999999999875
No 3
>PF00031 Cystatin: Cystatin domain; InterPro: IPR000010 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. The cystatins are cysteine proteinase inhibitors belonging to MEROPS inhibitor family I25, clan IH [, , ]. They mainly inhibit peptidases belonging to peptidase families C1 (papain family) and C13 (legumain family). The cystatin family includes: The Type 1 cystatins, which are intracellular cystatins that are present in the cytosol of many cell types, but can also appear in body fluids at significant concentrations. They are single-chain polypeptides of about 100 residues, which have neither disulphide bonds nor carbohydrate side chains. The Type 2 cystatins, which are mainly extracellular secreted polypeptides synthesised with a 19-28 residue signal peptide. They are broadly distributed and found in most body fluids. The Type 3 cystatins, which are multidomain proteins. The mammalian representatives of this group are the kininogens. There are three different kininogens in mammals: H- (high molecular mass, IPR002395 from INTERPRO) and L- (low molecular mass) kininogen which are found in a number of species, and T-kininogen that is found only in rat. Unclassified cystatins. These are cystatin-like proteins found in a range of organisms: plant phytocystatins, fetuin in mammals, insect cystatins and a puff adder venom cystatin which inhibits metalloproteases of the MEROPS peptidase family M12 (astacin/adamalysin). Also a number of the cystatins-like proteins have been shown to be devoid of inhibitory activity. All true cystatins inhibit cysteine peptidases of the papain family (MEROPS peptidase family C1), and some also inhibit legumain family enzymes (MEROPS peptidase family C13). These peptidases play key roles in physiological processes, such as intracellular protein degradation (cathepsins B, H and L), are pivotal in the remodelling of bone (cathepsin K), and may be important in the control of antigen presentation (cathepsin S, mammalian legumain). Moreover, the activities of such peptidases are increased in pathophysiological conditions, such as cancer metastasis and inflammation. Additionally, such peptidases are essential for several pathogenic parasites and bacteria. Thus in animals cystatins not only have capacity to regulate normal body processes and perhaps cause disease when down-regulated, but in other organisms may also participate in defence against biotic and abiotic stress. ; GO: 0004869 cysteine-type endopeptidase inhibitor activity; PDB: 3L0R_B 2W9P_K 2W9Q_A 3S67_A 3QRD_D 1R4C_G 3GAX_A 1TIJ_B 1G96_A 3NX0_A ....
Probab=99.73 E-value=1e-17 Score=102.87 Aligned_cols=60 Identities=40% Similarity=0.687 Sum_probs=55.5
Q ss_pred ccceeccCCCCCHHHHHHHHHHHHHhccc----------------CceeeeeEEEEEEEEecC-----------------
Q 034707 5 GGVREVEATANNQEIVNLARFAVDEHNKK----------------QQVVSGTLYDITLEAVEG----------------- 51 (86)
Q Consensus 5 GG~~~i~~~~~d~~Vq~la~~Av~~~n~~----------------~QVVaG~nY~l~v~~~~~----------------- 51 (86)
|||+++ +++||+++++++||+.+||++ +|||+|++|+|++++.++
T Consensus 1 Gg~~~~--~~~dp~v~~~~~~al~~~N~~~~~~~~~~~~~v~~a~~QvV~G~~Y~i~~~~~~t~C~k~~~~~~~C~~~~~ 78 (94)
T PF00031_consen 1 GGPSPV--DPNDPEVQEAAEFALDKFNEQSNSGYKFKLVKVISATTQVVAGINYYIEFEVGETNCKKSSKDFENCPFQEE 78 (94)
T ss_dssp SSEEEE--CTTSHHHHHHHHHHHHHHHHHSTTSEEEEEEEEEEEEEEESSSEEEEEEEEEEEEEEETCEEEEEECEBEST
T ss_pred CCCccC--CCCCHHHHHHHHHHHHHHHHhCcccCcceeeeeeEEEEeecCCceEEEEEEEEcccccccccccccCCcccc
Confidence 899999 789999999999999999988 999999999999998773
Q ss_pred -CceEEEEEEEEeccC
Q 034707 52 -GQKKLFEAKVWEKPW 66 (86)
Q Consensus 52 -~~~~~y~a~Vw~~pw 66 (86)
.....|.++||++||
T Consensus 79 ~~~~~~C~~~v~~~pW 94 (94)
T PF00031_consen 79 QPWTKFCKFTVWERPW 94 (94)
T ss_dssp TSSEEEEEEEEEEECG
T ss_pred CCceeeEEEEEEECCC
Confidence 457899999999999
No 4
>PF07430 PP1: Phloem filament protein PP1; InterPro: IPR009994 This domain represents a conserved region approximately 200 residues long, four copies of which are found within the plant phloem filament protein PP1. This is one of the constituents of the proteinaceous filaments found in the sieve elements of Cucurbita phloem [].
Probab=99.46 E-value=3.2e-13 Score=93.76 Aligned_cols=71 Identities=35% Similarity=0.478 Sum_probs=60.5
Q ss_pred cccceeccCCCCCHHHHHHHHHHHHHhccc-------------Cceee--eeEEEEEEEEecC-CceEEEEEEEEecc-C
Q 034707 4 VGGVREVEATANNQEIVNLARFAVDEHNKK-------------QQVVS--GTLYDITLEAVEG-GQKKLFEAKVWEKP-W 66 (86)
Q Consensus 4 ~GG~~~i~~~~~d~~Vq~la~~Av~~~n~~-------------~QVVa--G~nY~l~v~~~~~-~~~~~y~a~Vw~~p-w 66 (86)
..+|.++. |+++|+||+|++|||.|||+. .|=++ |++|+|++.+.|+ |+...|+|+||+++ |
T Consensus 114 ~~~Wi~I~-nin~p~VQeLgkFAV~EhNK~gd~LkF~KV~eGw~q~l~~d~ikYrLhI~AkDg~G~~~~YeAvV~~k~~~ 192 (202)
T PF07430_consen 114 SKKWIPIP-NINNPFVQELGKFAVIEHNKAGDKLKFEKVYEGWYQDLGNDGIKYRLHIVAKDGLGRLGNYEAVVWEKQFL 192 (202)
T ss_pred cCCCEECC-CCCcHHHHHHHHHHHHHHhhcCCceEEEEEeeEEEEeccCCCceEEEEEEeecCCCCcCceEEEEEEeccC
Confidence 46899998 999999999999999999966 56554 6999999999998 99999999999984 6
Q ss_pred CCc-eeEEEE
Q 034707 67 MQF-KELKEF 75 (86)
Q Consensus 67 ~n~-~~L~sf 75 (86)
.+. +-|.||
T Consensus 193 sk~i~i~~sf 202 (202)
T PF07430_consen 193 SKKIKILESF 202 (202)
T ss_pred cceEEEEecC
Confidence 654 555554
No 5
>PF07430 PP1: Phloem filament protein PP1; InterPro: IPR009994 This domain represents a conserved region approximately 200 residues long, four copies of which are found within the plant phloem filament protein PP1. This is one of the constituents of the proteinaceous filaments found in the sieve elements of Cucurbita phloem [].
Probab=99.07 E-value=1.3e-10 Score=80.84 Aligned_cols=76 Identities=14% Similarity=0.266 Sum_probs=68.1
Q ss_pred cccccceeccCCCCCHHHHHHHHHHHHHhccc----------------CceeeeeEEEEEEEEec-CCceEEEEEEEEec
Q 034707 2 ATVGGVREVEATANNQEIVNLARFAVDEHNKK----------------QQVVSGTLYDITLEAVE-GGQKKLFEAKVWEK 64 (86)
Q Consensus 2 ~~~GG~~~i~~~~~d~~Vq~la~~Av~~~n~~----------------~QVVaG~nY~l~v~~~~-~~~~~~y~a~Vw~~ 64 (86)
+..+||.++. |+.+|.+|++++|+|.+++.+ .|.+.+++|||.|++.| -|....|+++|+++
T Consensus 5 ~~~~~w~~ip-~v~~~~~q~v~~~~veq~k~~~~~~l~~~~v~egwy~el~~~~~~yrlhv~a~d~l~r~l~~e~ii~e~ 83 (202)
T PF07430_consen 5 PFSPKWIKIP-DVKEPCLQEVAKFAVEQFKIQYGDSLKFRSVVEGWYFELCPNSLKYRLHVKAIDFLGRSLKYEAIIIEE 83 (202)
T ss_pred ccCcccccCC-cccchHHHHHHHHHHHHHhhhcccceeeeeeeeceeecccccceeEEEeehhhhhhccccceeeeeeeh
Confidence 3569999998 999999999999999998887 67889999999999988 47889999999998
Q ss_pred c--CCCceeEEEEEec
Q 034707 65 P--WMQFKELKEFNTV 78 (86)
Q Consensus 65 p--w~n~~~L~sf~~~ 78 (86)
- |++.++|.||--+
T Consensus 84 ~~~~~~~~kl~s~l~~ 99 (202)
T PF07430_consen 84 KPQLTRIRKLASILAI 99 (202)
T ss_pred hhhhhhhhhhheeeEE
Confidence 5 9999999998543
No 6
>TIGR01638 Atha_cystat_rel Arabidopsis thaliana cystatin-related protein. This model represents a family similar in sequence and probably homologous to a large family of cysteine proteinase inhibitors, or cystatins, as described by pfam model pfam00031. Cystatins may help plants resist attack by insects.
Probab=97.18 E-value=0.00059 Score=42.73 Aligned_cols=50 Identities=22% Similarity=0.129 Sum_probs=40.0
Q ss_pred CCCHHHHHHHHHHHHHhccc--------------CceeeeeEEEEEEEEecC--C-ceEEEEEEEEe
Q 034707 14 ANNQEIVNLARFAVDEHNKK--------------QQVVSGTLYDITLEAVEG--G-QKKLFEAKVWE 63 (86)
Q Consensus 14 ~~d~~Vq~la~~Av~~~n~~--------------~QVVaG~nY~l~v~~~~~--~-~~~~y~a~Vw~ 63 (86)
.+..-+.+++++|+++||.. .|..+|..|.|++.+.|. + ..+.|.+.||-
T Consensus 10 T~rd~~~~la~~al~k~N~~~~t~lEfV~vVrAn~~~~~g~~~yITF~Ard~~d~p~~e~~q~~v~~ 76 (92)
T TIGR01638 10 TNRDLLERLSYVASKKYNDTKFLNLELVEVVRANYRGGAKSKSYITFEARDKPDGPLGEYQQAAVVY 76 (92)
T ss_pred CHHHHHHHHHHHHHHHhhhhcCceEEEEEEEEEEeeccceEEEEEEEEEecCCCCCHHHhhheeeEe
Confidence 34556689999999999976 889999999999999883 3 34566777766
No 7
>PF06907 Latexin: Latexin; InterPro: IPR009684 This family consists of several animal specific latexin and proteins related to latexin that belong to MEROPS proteinase inhibitor family I47, clan I- []. Latexin, a protein possessing inhibitory activity against rat carboxypeptidase A1 (CPA1) and CPA2 (MEROPS peptidase family M14A), is expressed in a neuronal subset in the cerebral cortex and cells in other neural and non-neural tissues of rat [, ]. OCX-32, the 32 kDa eggshell matrix protein, is present at high levels in the uterine fluid during the terminal phase of eggshell formation, and is localised predominantly in the outer eggshell. The timing of OCX-32 secretion into the uterine fluid suggests that it may play a role in the termination of mineral deposition []. OCX-32 protein possesses limited identity (32%) to two unrelated proteins: latexin and to a skin protein that is encoded by a retinoic acid receptor-responsive gene, TIG1. Tazarotene Induced Gene 1 (TIG1) is a putative 228 transmembrane protein with a small N-terminal intracellular region, a single membrane-spanning hydrophobic region, and a large C-terminal extracellular region containing a glycosylation signal. TIG1 is up-regulated by retinoic acid receptor but not by retinoid X receptor-specific synthetic retinoids []. TIG1 may be a tumour suppressor gene whose diminished expression is involved in the malignant progression of prostate cancer [].; PDB: 1WNH_A 2BO9_B.
Probab=79.88 E-value=13 Score=26.77 Aligned_cols=51 Identities=25% Similarity=0.297 Sum_probs=35.0
Q ss_pred CCCCHHHHHHHHHHHHHhccc----------Cc-------ee--eeeEEEEEEEEec---CCceEEEEEEEEe
Q 034707 13 TANNQEIVNLARFAVDEHNKK----------QQ-------VV--SGTLYDITLEAVE---GGQKKLFEAKVWE 63 (86)
Q Consensus 13 ~~~d~~Vq~la~~Av~~~n~~----------~Q-------VV--aG~nY~l~v~~~~---~~~~~~y~a~Vw~ 63 (86)
++..-..+++|+-|.-=+|-. .+ ++ .|-+|.|++.+.+ +.....|.|+|+=
T Consensus 3 ~p~h~~a~rAA~va~hy~N~~~GSP~~l~~l~~V~~a~~e~ip~~G~Ky~L~FSte~~~~~e~~g~CsA~V~f 75 (220)
T PF06907_consen 3 NPSHRPAQRAARVAQHYINYRAGSPSRLFVLQQVQKARAEDIPGEGCKYDLVFSTEEYIEGEHLGNCSAEVFF 75 (220)
T ss_dssp -TTSHHHHHHHHHHHHHHHHHH-BTTB-EEEEEEEEEEEEEETTTEEEEEEEEEEEETTT---EEEEEEEEEE
T ss_pred CCcchHHHHHHHHHHHHhccccCCCceeeehhhhhhhhheeccCCCCEEEEEEEhHHhhcCCceeEeEEEEEe
Confidence 345555677777777666666 22 22 2889999999987 4678999999987
No 8
>PF11030 Nucleocapsid-N: Nucleocapsid protein N ; InterPro: IPR020253 This entry represents the nucleocapsid protein from bovine, porcine and equine toroviruses. It is the major structural component of virions associating with the virion genomic RNA.
Probab=40.22 E-value=40 Score=22.60 Aligned_cols=32 Identities=34% Similarity=0.448 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHhccc--CceeeeeEEEEEEEEecC
Q 034707 17 QEIVNLARFAVDEHNKK--QQVVSGTLYDITLEAVEG 51 (86)
Q Consensus 17 ~~Vq~la~~Av~~~n~~--~QVVaG~nY~l~v~~~~~ 51 (86)
|+.|.+|-..+.++-+. .|+|+|- -+|+++.|
T Consensus 116 ~emq~~aptklvkiakraamqivsgh---atveis~g 149 (167)
T PF11030_consen 116 PEMQNIAPTKLVKIAKRAAMQIVSGH---ATVEISNG 149 (167)
T ss_pred hHHhhcchHHHHHHHHHHHHHhhccc---eEEEecCC
Confidence 45555555444444444 8999994 56777765
No 9
>PRK15344 type III secretion system needle protein SsaG; Provisional
Probab=39.41 E-value=41 Score=20.07 Aligned_cols=20 Identities=25% Similarity=0.242 Sum_probs=17.2
Q ss_pred CCCCHHHHHHHHHHHHHhcc
Q 034707 13 TANNQEIVNLARFAVDEHNK 32 (86)
Q Consensus 13 ~~~d~~Vq~la~~Av~~~n~ 32 (86)
+++||+..--+.|++.+|+.
T Consensus 29 ~~~nP~~ml~lQf~i~QyS~ 48 (71)
T PRK15344 29 DLLNPESMIKAQFALQQYST 48 (71)
T ss_pred CCCCHHHHHHHHHHHHHHHH
Confidence 78999998888999988764
No 10
>TIGR02105 III_needle type III secretion apparatus needle protein. Type III secretion systems translocate proteins, usually virulence factors, out across both inner and outer membranes of certain Gram-negative bacteria and further across the plasma membrane and into the cytoplasm of the host cell. This protein, termed YscF in Yersinia, and EscF, PscF, EprI, etc. in other systems, forms the needle of the injection apparatus.
Probab=37.28 E-value=44 Score=19.78 Aligned_cols=21 Identities=19% Similarity=0.339 Sum_probs=17.4
Q ss_pred CCCCHHHHHHHHHHHHHhccc
Q 034707 13 TANNQEIVNLARFAVDEHNKK 33 (86)
Q Consensus 13 ~~~d~~Vq~la~~Av~~~n~~ 33 (86)
.++||+..--..|++.+||--
T Consensus 30 ~~~nP~~La~~Q~~~~qYs~~ 50 (72)
T TIGR02105 30 LPNDPELMAELQFALNQYSAY 50 (72)
T ss_pred CCCCHHHHHHHHHHHHHHHHH
Confidence 579999988888999988743
No 11
>KOG2650 consensus Zinc carboxypeptidase [Function unknown]
Probab=36.19 E-value=50 Score=25.84 Aligned_cols=45 Identities=22% Similarity=0.256 Sum_probs=28.4
Q ss_pred cceeccCCCCCHHHHHHHHHHHHHhccc------------------------CceeeeeEEEEEEEEecC
Q 034707 6 GVREVEATANNQEIVNLARFAVDEHNKK------------------------QQVVSGTLYDITLEAVEG 51 (86)
Q Consensus 6 G~~~i~~~~~d~~Vq~la~~Av~~~n~~------------------------~QVVaG~nY~l~v~~~~~ 51 (86)
|++... ..|-++++++|+.|++...+. .+-+.|+.|-+++++.|.
T Consensus 320 g~~~~~-~~~~~dl~~va~~a~~ai~~~~gt~Y~~G~~~~~~y~asG~S~Dway~~~gi~~~ft~ELrd~ 388 (418)
T KOG2650|consen 320 GYTNDL-PEDYEDLQEVARAAADALKSVYGTKYTVGSSADTLYPASGGSDDWAYDVLGIPYAFTFELRDT 388 (418)
T ss_pred cccCCC-CCCHHHHHHHHHHHHHHHHHHhCCEEEeccccceeeccCCchHHHhhhccCCCEEEEEEeccC
Confidence 444443 356677888999888665544 334566677777766654
No 12
>PF02995 DUF229: Protein of unknown function (DUF229); InterPro: IPR004245 Members of this family are uncharacterised with a long conserved region that may contain several domains.
Probab=34.24 E-value=39 Score=26.63 Aligned_cols=29 Identities=28% Similarity=0.464 Sum_probs=24.7
Q ss_pred ccccceeccCCCCCHHHHHHHHHHHHHhccc
Q 034707 3 TVGGVREVEATANNQEIVNLARFAVDEHNKK 33 (86)
Q Consensus 3 ~~GG~~~i~~~~~d~~Vq~la~~Av~~~n~~ 33 (86)
+|.+|.++ ..+++.++.+|+++|...|..
T Consensus 450 ~C~~~~~~--~~~~~~~~~~a~~~v~~iN~~ 478 (497)
T PF02995_consen 450 TCEGWKTI--PTNDSLVQRIAKFLVDHINEY 478 (497)
T ss_pred cCcCcccc--ccCcHHHHHHHHHHHHHHHHH
Confidence 35688888 688999999999999999865
No 13
>smart00773 WGR Proposed nucleic acid binding domain. This domain is named after its most conserved central motif. It is found in a variety of polyA polymerases as well as in molybdate metabolism regulators (e.g. in E.coli) and other proteins of unknown function. The domain is found in isolation in some proteins and is between 70 and 80 residues in length. It is proposed that it may be a nucleic acid binding domain.
Probab=29.62 E-value=1.2e+02 Score=17.63 Aligned_cols=44 Identities=14% Similarity=0.435 Sum_probs=29.0
Q ss_pred eeeEEEEEEEEecC--CceEEEEEEEEeccCCCceeEEEEEecCCC
Q 034707 38 SGTLYDITLEAVEG--GQKKLFEAKVWEKPWMQFKELKEFNTVAQS 81 (86)
Q Consensus 38 aG~nY~l~v~~~~~--~~~~~y~a~Vw~~pw~n~~~L~sf~~~~~~ 81 (86)
.|..|...+...+. +..+.|.+.|.+.......-..++-+++.+
T Consensus 2 ~~~~~~~~L~~~d~~~n~nkfy~iql~~~~~~~~~v~~~wGRiG~~ 47 (84)
T smart00773 2 GGEIYDVYLNQTDLASNNNKFYRIQLLEDDFGGYSVWRRWGRIGTN 47 (84)
T ss_pred CCceeEEEEEccccccCCeeEEEEEEEEcCCCCEEEEEEeeecCCC
Confidence 35667777777663 447888888877665554555666666654
No 14
>cd06382 PBP1_iGluR_Kainate N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors, non-NMDA ionotropic receptors which respond to the neurotransmitter glutamate. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Kainate receptors have five subunits, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeri
Probab=29.03 E-value=1.5e+02 Score=20.97 Aligned_cols=43 Identities=16% Similarity=0.362 Sum_probs=30.0
Q ss_pred cccceeccCCCCCHHHHHHHHHHHHHhcccCceeeeeEEEEEEEEe
Q 034707 4 VGGVREVEATANNQEIVNLARFAVDEHNKKQQVVSGTLYDITLEAV 49 (86)
Q Consensus 4 ~GG~~~i~~~~~d~~Vq~la~~Av~~~n~~~QVVaG~nY~l~v~~~ 49 (86)
+|++-+. ......++.+++|++++|...-+..|....+.+.-.
T Consensus 2 iG~i~~~---~~g~~~~~a~~lAv~~iN~~ggil~g~~l~~~~~d~ 44 (327)
T cd06382 2 IGAIFDD---DDDSGEELAFRYAIDRINREKELLANTTLEYDIKRV 44 (327)
T ss_pred eEEEecC---CCchHHHHHHHHHHHHhcccccccCCceEEEEEEEe
Confidence 3555553 346788999999999999875566677666655543
No 15
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=28.76 E-value=90 Score=18.98 Aligned_cols=28 Identities=14% Similarity=0.287 Sum_probs=20.4
Q ss_pred eeeEEEEEEEEecCCceEEEEEEEEecc
Q 034707 38 SGTLYDITLEAVEGGQKKLFEAKVWEKP 65 (86)
Q Consensus 38 aG~nY~l~v~~~~~~~~~~y~a~Vw~~p 65 (86)
.|..|.|.|.-..-.....|.+.+|..|
T Consensus 58 ~~~~~tL~I~~vq~~D~G~Y~Cqv~t~p 85 (95)
T cd05881 58 SSNELRVSLSNVSLSDEGRYFCQLYTDP 85 (95)
T ss_pred CCCEEEEEECcCCcccCEEEEEEEEccc
Confidence 3777877776544445579999999987
No 16
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=28.17 E-value=66 Score=19.73 Aligned_cols=16 Identities=13% Similarity=0.341 Sum_probs=11.5
Q ss_pred eeeeeEEEEEEEEecC
Q 034707 36 VVSGTLYDITLEAVEG 51 (86)
Q Consensus 36 VVaG~nY~l~v~~~~~ 51 (86)
+-.|..|++.|...+|
T Consensus 57 ~~~g~~Yky~i~~~~G 72 (99)
T cd02854 57 IPHGSKIKVRMVTPSG 72 (99)
T ss_pred CCCCCEEEEEEEeCCC
Confidence 4468888888887554
No 17
>PF14730 DUF4468: Domain of unknown function (DUF4468) with TBP-like fold
Probab=27.00 E-value=1.4e+02 Score=17.69 Aligned_cols=12 Identities=17% Similarity=0.556 Sum_probs=7.4
Q ss_pred eEEEEEEEEecC
Q 034707 40 TLYDITLEAVEG 51 (86)
Q Consensus 40 ~nY~l~v~~~~~ 51 (86)
++|.|+++..||
T Consensus 66 i~y~l~i~~kDg 77 (91)
T PF14730_consen 66 INYTLIIDCKDG 77 (91)
T ss_pred EEEEEEEEEECC
Confidence 356666666665
No 18
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=26.58 E-value=1.7e+02 Score=20.08 Aligned_cols=37 Identities=19% Similarity=0.263 Sum_probs=30.6
Q ss_pred eeeeeEEEEEEEEecCCceEEEEEEEEeccCC-CceeE
Q 034707 36 VVSGTLYDITLEAVEGGQKKLFEAKVWEKPWM-QFKEL 72 (86)
Q Consensus 36 VVaG~nY~l~v~~~~~~~~~~y~a~Vw~~pw~-n~~~L 72 (86)
+|.|.+..+++.+-+-|...-|++++-+.+|- +..+|
T Consensus 34 ~v~g~~v~V~~~iyN~G~~~A~dV~l~D~~fp~~~F~l 71 (181)
T PF05753_consen 34 LVEGEDVTVTYTIYNVGSSAAYDVKLTDDSFPPEDFEL 71 (181)
T ss_pred ccCCcEEEEEEEEEECCCCeEEEEEEECCCCCccccEe
Confidence 77899999999999988889999999997775 33444
No 19
>cd06385 PBP1_NPR_A Ligand-binding domain of type A natriuretic peptide receptor. Ligand-binding domain of type A natriuretic peptide receptor (NPR-A). NPR-A is one of three known single membrane-spanning natriuretic peptide receptors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. NPR-A is highly expressed in kidney, adrenal, terminal ileum, adipose, aortic, and lung tissues. The rank order of NPR-A activation by natriuretic peptides is ANPBNPCNP. Single allele-inactivating mutations in the promoter of human NPR-A are associated with hypertension and heart failure.
Probab=22.72 E-value=1.6e+02 Score=21.72 Aligned_cols=44 Identities=11% Similarity=0.059 Sum_probs=27.4
Q ss_pred ccceeccCC---CCCHHHHHHHHHHHHHhcccCceeeeeEEEEEEEEec
Q 034707 5 GGVREVEAT---ANNQEIVNLARFAVDEHNKKQQVVSGTLYDITLEAVE 50 (86)
Q Consensus 5 GG~~~i~~~---~~d~~Vq~la~~Av~~~n~~~QVVaG~nY~l~v~~~~ 50 (86)
|+.-|.+++ ..-+.+...+++|+.++|...=+..|. .|++...|
T Consensus 3 g~l~~~~~~~~~~~~~~~~~a~~lAve~IN~~~gil~g~--~l~~~~~D 49 (405)
T cd06385 3 AVILPLTNTSYPWAWPRVGPALERAIDRVNADPDLLPGL--HLQYVLGS 49 (405)
T ss_pred eEECCCCCCcCccchhhhHHHHHHHHHHHhcCCCCCCCc--eEEEEEcc
Confidence 555554422 123778899999999999763344454 45555555
No 20
>PF14054 DUF4249: Domain of unknown function (DUF4249)
Probab=22.35 E-value=2.3e+02 Score=19.92 Aligned_cols=17 Identities=24% Similarity=0.431 Sum_probs=14.7
Q ss_pred ceeeeeEEEEEEEEecC
Q 034707 35 QVVSGTLYDITLEAVEG 51 (86)
Q Consensus 35 QVVaG~nY~l~v~~~~~ 51 (86)
.+.+|..|+|+|.+.++
T Consensus 95 ~~~~G~~Y~L~V~~~~~ 111 (298)
T PF14054_consen 95 RGRPGRTYRLEVETPGG 111 (298)
T ss_pred cccCCCEEEEEEEECCC
Confidence 68899999999999743
No 21
>PF07849 DUF1641: Protein of unknown function (DUF1641); InterPro: IPR012440 Archaeal and bacterial hypothetical proteins are found in this family, with the region in question being approximately 40 residues long.
Probab=22.26 E-value=97 Score=16.16 Aligned_cols=14 Identities=7% Similarity=0.162 Sum_probs=11.7
Q ss_pred CCCHHHHHHHHHHH
Q 034707 14 ANNQEIVNLARFAV 27 (86)
Q Consensus 14 ~~d~~Vq~la~~Av 27 (86)
..||+||....|.+
T Consensus 20 l~DpdvqrgL~~ll 33 (42)
T PF07849_consen 20 LRDPDVQRGLGFLL 33 (42)
T ss_pred HcCHHHHHHHHHHH
Confidence 68999999888755
No 22
>PF13028 DUF3889: Protein of unknown function (DUF3889)
Probab=21.93 E-value=2.2e+02 Score=17.85 Aligned_cols=62 Identities=21% Similarity=0.127 Sum_probs=42.4
Q ss_pred CCCHHHHHHHHHHHHHhccc--------------Cceeee-eEEEEEEEEecCCceEEEEEEEEeccCCCceeEEEE
Q 034707 14 ANNQEIVNLARFAVDEHNKK--------------QQVVSG-TLYDITLEAVEGGQKKLFEAKVWEKPWMQFKELKEF 75 (86)
Q Consensus 14 ~~d~~Vq~la~~Av~~~n~~--------------~QVVaG-~nY~l~v~~~~~~~~~~y~a~Vw~~pw~n~~~L~sf 75 (86)
..+|.+..-.+.|+++.-++ +|+-.+ +.-.+++.+.++++.--..+.|.=.|-.+...=++|
T Consensus 18 ~~~p~yaKWgrlA~~~~k~~Yp~a~v~DY~~vGr~~~~~~~t~e~Fkl~l~~~~kefgV~v~V~f~p~T~ki~~I~~ 94 (97)
T PF13028_consen 18 QAQPSYAKWGRLAVQETKEKYPGAEVVDYLYVGRTKVNDEQTVEKFKLWLREGGKEFGVFVTVSFNPKTEKIISINV 94 (97)
T ss_pred cCCCcHHHHHHHHHHHHHHHCCCCEEeeeeeecceecCCcceEEEEEEEEEcCCeEEEEEEEEEEeCCCCcEEEEEE
Confidence 45677877777788664333 556666 788888888888877777777777776664333333
No 23
>PF12733 Cadherin-like: Cadherin-like beta sandwich domain
Probab=21.82 E-value=1.7e+02 Score=16.74 Aligned_cols=28 Identities=21% Similarity=0.248 Sum_probs=17.6
Q ss_pred eeeeeEEEEEEEE--ecCCceEEEEEEEEe
Q 034707 36 VVSGTLYDITLEA--VEGGQKKLFEAKVWE 63 (86)
Q Consensus 36 VVaG~nY~l~v~~--~~~~~~~~y~a~Vw~ 63 (86)
+-.|.|..++|.+ .+|...+.|.+.|..
T Consensus 58 L~~G~n~~i~i~Vta~dg~~~~tYti~V~R 87 (88)
T PF12733_consen 58 LNEGENTVITITVTAEDGTTTKTYTITVTR 87 (88)
T ss_pred ccCCCceEEEEEEEcCCCcEEEEEEEEEEe
Confidence 4458666555555 445455669998875
No 24
>smart00678 WWE Domain in Deltex and TRIP12 homologues. Possibly involved in regulation of ubiquitin-mediated proteolysis.
Probab=21.12 E-value=1.7e+02 Score=16.40 Aligned_cols=40 Identities=18% Similarity=0.146 Sum_probs=24.3
Q ss_pred cccceeccCCCCCHHHHHHHHHHHHHhcccCc-eeeeeEEEEEEEE
Q 034707 4 VGGVREVEATANNQEIVNLARFAVDEHNKKQQ-VVSGTLYDITLEA 48 (86)
Q Consensus 4 ~GG~~~i~~~~~d~~Vq~la~~Av~~~n~~~Q-VVaG~nY~l~v~~ 48 (86)
.|+|.+.+ +.+.+..+.|-.+-+.... .+.|..|.|.+..
T Consensus 9 ~g~W~~Y~-----~~~~~~IE~ay~~~~~~~~v~~~g~~Y~IdF~~ 49 (73)
T smart00678 9 NGKWWPYD-----PRVSEDIEEAYAAGKKLCELSICGFPYTIDFNA 49 (73)
T ss_pred CCCeeeCC-----hHHHHHHHHHHHcCCCeEEEEECCeEEEEECcC
Confidence 47798883 4555666666654332233 3468888888764
No 25
>cd06368 PBP1_iGluR_non_NMDA_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors, characterized by their response to glutamate agonists: N-methyl-d -aspartate (NMDA) and non-NMDA receptors. NMDA receptors
Probab=20.92 E-value=2e+02 Score=20.10 Aligned_cols=30 Identities=20% Similarity=0.439 Sum_probs=22.6
Q ss_pred cccceeccCCCCCHHHHHHHHHHHHHhcccCcee
Q 034707 4 VGGVREVEATANNQEIVNLARFAVDEHNKKQQVV 37 (86)
Q Consensus 4 ~GG~~~i~~~~~d~~Vq~la~~Av~~~n~~~QVV 37 (86)
+||.-+.. . +..+..++.|+.++|....+.
T Consensus 2 iG~i~~~~-~---~~~~~a~~lAv~~iN~~ggil 31 (324)
T cd06368 2 IGAIFDED-A---RQEELAFRFAIDRINTNEEIL 31 (324)
T ss_pred EEEEeCCC-C---hHHHHHHHHHHHHhccccccc
Confidence 57777774 2 778899999999999874443
No 26
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=20.51 E-value=1.4e+02 Score=16.17 Aligned_cols=18 Identities=28% Similarity=0.521 Sum_probs=12.3
Q ss_pred CceeeeeEEEEEEEEecC
Q 034707 34 QQVVSGTLYDITLEAVEG 51 (86)
Q Consensus 34 ~QVVaG~nY~l~v~~~~~ 51 (86)
..+..|+.|.+.|.+-++
T Consensus 61 ~~L~p~t~Y~~~v~a~~~ 78 (85)
T PF00041_consen 61 TGLQPGTTYEFRVRAVNS 78 (85)
T ss_dssp ESCCTTSEEEEEEEEEET
T ss_pred ccCCCCCEEEEEEEEEeC
Confidence 345667788888876554
No 27
>PF01448 ELM2: ELM2 domain; InterPro: IPR000949 The ELM2 (Egl-27 and MTA1 homology 2) domain is a small domain of unknown function. It is found in the MTA1 protein that is part of the NuRD complex []. The domain is usually found to the N terminus of a myb-like DNA binding domain and a GATA binding domain. ELM2, in some instances, is also found associated with the ARID DNA binding domain IPR001606 from INTERPRO. This suggests that ELM2 may also be involved in DNA binding, or perhaps is a protein-protein interaction domain.
Probab=20.15 E-value=1e+02 Score=16.58 Aligned_cols=21 Identities=5% Similarity=0.077 Sum_probs=15.7
Q ss_pred ceeccCCCCCHHHHHHHHHHHH
Q 034707 7 VREVEATANNQEIVNLARFAVD 28 (86)
Q Consensus 7 ~~~i~~~~~d~~Vq~la~~Av~ 28 (86)
|.|-. ..+|.+|.+...+|..
T Consensus 33 W~P~~-~~~d~~l~~yl~~A~s 53 (55)
T PF01448_consen 33 WSPNN-PLSDRKLEEYLKVAKS 53 (55)
T ss_pred ECCCC-CCCHHHHHHHHHHHHh
Confidence 56654 6788899888888765
Done!