BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034713
(86 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 145 bits (366), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 68/82 (82%), Positives = 75/82 (91%)
Query: 5 KFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMF 64
+F + +YADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARM+
Sbjct: 71 RFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMY 130
Query: 65 SENKREYNRRVREIVEQSWTAD 86
SE+KREYNRRVR++VEQSWTAD
Sbjct: 131 SESKREYNRRVRDVVEQSWTAD 152
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 121 bits (304), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 57/79 (72%), Positives = 67/79 (84%)
Query: 5 KFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMF 64
KF + VYADGSICLDILQN+WSP YDVAAILTSIQSLL +PNPNSPANS AA+++
Sbjct: 74 KFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLY 133
Query: 65 SENKREYNRRVREIVEQSW 83
EN+REY +RV++IVEQSW
Sbjct: 134 QENRREYEKRVQQIVEQSW 152
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 121 bits (303), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 57/79 (72%), Positives = 67/79 (84%)
Query: 5 KFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMF 64
KF + VYADGSICLDILQN+WSP YDVAAILTSIQSLL +PNPNSPANS AA+++
Sbjct: 71 KFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLY 130
Query: 65 SENKREYNRRVREIVEQSW 83
EN+REY +RV++IVEQSW
Sbjct: 131 QENRREYEKRVQQIVEQSW 149
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 119 bits (297), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 55/79 (69%), Positives = 66/79 (83%)
Query: 5 KFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMF 64
+F + VYADGSICLDILQN+WSP YDV++ILTSIQSLL +PNPNSPANS+AA+++
Sbjct: 71 RFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLY 130
Query: 65 SENKREYNRRVREIVEQSW 83
ENKREY +RV IVEQSW
Sbjct: 131 QENKREYEKRVSAIVEQSW 149
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 106 bits (265), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 49/79 (62%), Positives = 61/79 (77%)
Query: 5 KFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMF 64
KF + VYA+G ICLDILQN+W+P YDVA+ILTSIQSL DPNP SPAN EAA +F
Sbjct: 71 KFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLF 130
Query: 65 SENKREYNRRVREIVEQSW 83
++K +Y +RV+E VE+SW
Sbjct: 131 KDHKSQYVKRVKETVEKSW 149
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 56/87 (64%), Gaps = 7/87 (8%)
Query: 2 TDFKFQFCLV--LAKVY-----ADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 54
TD+ F+ + K+Y ++GSICLDIL++QWSP V+ +L SI SLLCDPNP+
Sbjct: 76 TDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDD 135
Query: 55 PANSEAARMFSENKREYNRRVREIVEQ 81
P + A+++ +K +YNR RE ++
Sbjct: 136 PLVPDIAQIYKSDKEKYNRHAREWTQK 162
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 153
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 56/87 (64%), Gaps = 7/87 (8%)
Query: 2 TDFKFQFCLV--LAKVY-----ADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 54
TD+ F+ + K+Y ++GSICLDIL++QWSP V+ +L SI SLLCDPNP+
Sbjct: 64 TDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDD 123
Query: 55 PANSEAARMFSENKREYNRRVREIVEQ 81
P + A+++ +K +YNR RE ++
Sbjct: 124 PLVPDIAQIYKSDKEKYNRHAREWTQK 150
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 56/87 (64%), Gaps = 7/87 (8%)
Query: 2 TDFKFQFCLV--LAKVY-----ADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 54
TD+ F+ + K+Y ++GSICLDIL++QWSP V+ +L SI SLLCDPNP+
Sbjct: 60 TDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDD 119
Query: 55 PANSEAARMFSENKREYNRRVREIVEQ 81
P + A+++ +K +YNR RE ++
Sbjct: 120 PLVPDIAQIYKSDKEKYNRHAREWTQK 146
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 56/87 (64%), Gaps = 7/87 (8%)
Query: 2 TDFKFQFCLV--LAKVY-----ADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 54
TD+ F+ V ++Y ++GSICLDIL++QWSP ++ +L SI SLLCDPNP+
Sbjct: 76 TDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDD 135
Query: 55 PANSEAARMFSENKREYNRRVREIVEQ 81
P E AR++ ++ +YNR RE ++
Sbjct: 136 PLVPEIARIYKTDREKYNRIAREWTQK 162
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 56/87 (64%), Gaps = 7/87 (8%)
Query: 2 TDFKFQFCLV--LAKVY-----ADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 54
TD+ F+ V ++Y ++GSICLDIL++QWSP ++ +L SI SLLCDPNP+
Sbjct: 60 TDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDD 119
Query: 55 PANSEAARMFSENKREYNRRVREIVEQ 81
P E AR++ ++ +YNR RE ++
Sbjct: 120 PLVPEIARIYKTDREKYNRIAREWTQK 146
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 55/87 (63%), Gaps = 7/87 (8%)
Query: 2 TDFKFQFCLV--LAKVY-----ADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 54
TD+ F+ V K+Y ++GSICLDIL++QWSP V+ +L SI SLLCDPNP+
Sbjct: 63 TDYPFKPPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDD 122
Query: 55 PANSEAARMFSENKREYNRRVREIVEQ 81
P + A ++ +K +YNR RE ++
Sbjct: 123 PLVPDIAHIYKSDKEKYNRLAREWTQK 149
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 56/87 (64%), Gaps = 7/87 (8%)
Query: 2 TDFKFQFCLV--LAKVY-----ADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 54
TD+ F+ V ++Y ++GSICLDIL++QWSP ++ +L SI SLLCDPNP+
Sbjct: 63 TDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDD 122
Query: 55 PANSEAARMFSENKREYNRRVREIVEQ 81
P E AR++ ++ +YNR RE ++
Sbjct: 123 PLVPEIARIYKTDREKYNRIAREWTQK 149
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating Enzyme
Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 56/87 (64%), Gaps = 7/87 (8%)
Query: 2 TDFKFQFCLV--LAKVY-----ADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 54
TD+ F+ V ++Y ++GSICLDIL++QWSP ++ +L SI SLLCDPNP+
Sbjct: 58 TDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDD 117
Query: 55 PANSEAARMFSENKREYNRRVREIVEQ 81
P E AR++ ++ +YNR RE ++
Sbjct: 118 PLVPEIARIYKTDREKYNRIAREWTQK 144
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 56/87 (64%), Gaps = 7/87 (8%)
Query: 2 TDFKFQFCLV--LAKVY-----ADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 54
TD+ F+ V ++Y ++GSICLDIL++QWSP ++ +L SI SLLCDPNP+
Sbjct: 60 TDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDD 119
Query: 55 PANSEAARMFSENKREYNRRVREIVEQ 81
P E AR++ ++ +YNR RE ++
Sbjct: 120 PLVPEIARIYKTDREKYNRIAREWTQK 146
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type
Length = 149
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 56/87 (64%), Gaps = 7/87 (8%)
Query: 2 TDFKFQFCLV--LAKVY-----ADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 54
TD+ F+ V ++Y ++GSICLDIL++QWSP ++ +L SI SLLCDPNP+
Sbjct: 60 TDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDD 119
Query: 55 PANSEAARMFSENKREYNRRVREIVEQ 81
P E AR++ ++ +YNR RE ++
Sbjct: 120 PLVPEIARIYKTDREKYNRIAREWTQK 146
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 56/87 (64%), Gaps = 7/87 (8%)
Query: 2 TDFKFQFCLV--LAKVY-----ADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 54
TD+ F+ V ++Y ++GSICLDIL++QWSP ++ +L SI SLLCDPNP+
Sbjct: 68 TDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDD 127
Query: 55 PANSEAARMFSENKREYNRRVREIVEQ 81
P E AR++ ++ +YNR RE ++
Sbjct: 128 PLVPEIARIYQTDREKYNRIAREWTQK 154
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 72.8 bits (177), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 55/87 (63%), Gaps = 7/87 (8%)
Query: 2 TDFKFQFCLV--LAKVY-----ADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 54
TD+ F+ V ++Y ++GSICLDIL++QW P ++ +L SI SLLCDPNP+
Sbjct: 60 TDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWGPALTISKVLLSICSLLCDPNPDD 119
Query: 55 PANSEAARMFSENKREYNRRVREIVEQ 81
P E AR++ ++ +YNR RE ++
Sbjct: 120 PLVPEIARIYKTDREKYNRIAREWTQK 146
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 72.8 bits (177), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 56/87 (64%), Gaps = 7/87 (8%)
Query: 2 TDFKFQFCLV--LAKVY-----ADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 54
TD+ F+ V ++Y ++GSICLDIL++QWSP ++ +L SI SLLCDPNP+
Sbjct: 66 TDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDD 125
Query: 55 PANSEAARMFSENKREYNRRVREIVEQ 81
P E AR++ ++ +YNR RE ++
Sbjct: 126 PLVPEIARIYKTDRDKYNRISREWTQK 152
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 72.8 bits (177), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 56/87 (64%), Gaps = 7/87 (8%)
Query: 2 TDFKFQFCLV--LAKVY-----ADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 54
TD+ F+ V ++Y ++GSICLDIL++QWSP ++ +L SI SLLCDPNP+
Sbjct: 60 TDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDD 119
Query: 55 PANSEAARMFSENKREYNRRVREIVEQ 81
P E AR++ ++ +YNR RE ++
Sbjct: 120 PLVPEIARIYKTDRDKYNRISREWTQK 146
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 72.8 bits (177), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 56/87 (64%), Gaps = 7/87 (8%)
Query: 2 TDFKFQFCLV--LAKVY-----ADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 54
TD+ F+ V ++Y ++GSICLDIL++QWSP ++ +L SI SLLCDPNP+
Sbjct: 68 TDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDD 127
Query: 55 PANSEAARMFSENKREYNRRVREIVEQ 81
P E AR++ ++ +YNR RE ++
Sbjct: 128 PLVPEIARIYKTDRDKYNRISREWTQK 154
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 72.4 bits (176), Expect = 5e-14, Method: Composition-based stats.
Identities = 31/67 (46%), Positives = 47/67 (70%)
Query: 15 VYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRR 74
+ ++GSI LDIL++QWSP ++ +L SI SLLCDPNP+ P E AR++ ++ +YNR
Sbjct: 80 INSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRI 139
Query: 75 VREIVEQ 81
RE ++
Sbjct: 140 AREWTQK 146
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 72.4 bits (176), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 56/87 (64%), Gaps = 7/87 (8%)
Query: 2 TDFKFQFCLV--LAKVY-----ADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 54
TD+ F+ V ++Y ++GSICLDIL++QWSP ++ +L SI SLLCDPNP+
Sbjct: 57 TDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDD 116
Query: 55 PANSEAARMFSENKREYNRRVREIVEQ 81
P E AR++ ++ +YNR RE ++
Sbjct: 117 PLVPEIARIYKTDRDKYNRISREWTQK 143
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 72.0 bits (175), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 55/87 (63%), Gaps = 7/87 (8%)
Query: 2 TDFKFQFCLV--LAKVY-----ADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 54
TD+ F+ V ++Y ++GSICLDIL++QWSP ++ +L SI SLLCDPNP+
Sbjct: 61 TDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDD 120
Query: 55 PANSEAARMFSENKREYNRRVREIVEQ 81
P E AR++ ++ YN+ RE ++
Sbjct: 121 PLVPEIARIYKTDRERYNQLAREWTQK 147
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 71.6 bits (174), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 55/87 (63%), Gaps = 7/87 (8%)
Query: 2 TDFKFQFCLV--LAKVY-----ADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 54
TD+ F+ V ++Y ++GSICLD L++QWSP ++ +L SI SLLCDPNP+
Sbjct: 60 TDYPFKPPKVAFTTRIYHPNINSNGSICLDALRSQWSPALTISKVLLSICSLLCDPNPDD 119
Query: 55 PANSEAARMFSENKREYNRRVREIVEQ 81
P E AR++ ++ +YNR RE ++
Sbjct: 120 PLVPEIARIYKTDREKYNRIAREWTQK 146
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 70.5 bits (171), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 55/87 (63%), Gaps = 7/87 (8%)
Query: 2 TDFKFQFCLV--LAKVY-----ADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 54
TD+ F+ V ++Y ++GSI LDIL++QWSP ++ +L SI SLLCDPNP+
Sbjct: 61 TDYPFKPPKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDD 120
Query: 55 PANSEAARMFSENKREYNRRVREIVEQ 81
P E AR++ ++ +YNR RE ++
Sbjct: 121 PLVPEIARIYKTDREKYNRIAREWTQK 147
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 70.5 bits (171), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 55/87 (63%), Gaps = 7/87 (8%)
Query: 2 TDFKFQFCLV--LAKVY-----ADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 54
TD+ F+ + K+Y ++GSI LDIL++QWSP V+ +L SI SLLCDPNP+
Sbjct: 64 TDYPFKPPKIAFTTKIYHPNINSNGSIKLDILRSQWSPALTVSKVLLSICSLLCDPNPDD 123
Query: 55 PANSEAARMFSENKREYNRRVREIVEQ 81
P + A+++ +K +YNR RE ++
Sbjct: 124 PLVPDIAQIYKSDKEKYNRHAREWTQK 150
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 70.5 bits (171), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 55/87 (63%), Gaps = 7/87 (8%)
Query: 2 TDFKFQFCLV--LAKVY-----ADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 54
TD+ F+ V ++Y ++GSI LDIL++QWSP ++ +L SI SLLCDPNP+
Sbjct: 57 TDYPFKPPKVAFTTRIYHPNINSNGSISLDILRSQWSPALKISKVLLSICSLLCDPNPDD 116
Query: 55 PANSEAARMFSENKREYNRRVREIVEQ 81
P E AR++ ++ +YNR RE ++
Sbjct: 117 PLVPEIARIYKTDREKYNRIAREWTQK 143
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 70.5 bits (171), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 55/87 (63%), Gaps = 7/87 (8%)
Query: 2 TDFKFQFCLV--LAKVY-----ADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 54
TD+ F+ V ++Y ++GSI LDIL++QWSP ++ +L SI SLLCDPNP+
Sbjct: 58 TDYPFKPPKVAFTTRIYHPAINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDD 117
Query: 55 PANSEAARMFSENKREYNRRVREIVEQ 81
P E AR++ ++ +YNR RE ++
Sbjct: 118 PLVPEIARIYKTDREKYNRIAREWTQK 144
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 55/87 (63%), Gaps = 7/87 (8%)
Query: 2 TDFKFQFCLV--LAKVY-----ADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 54
TD+ F+ V ++Y ++GSI LDIL++QWSP ++ +L SI SLLCDPNP+
Sbjct: 76 TDYPFKPPKVAFTTRIYHPNINSNGSIXLDILRSQWSPALTISKVLLSICSLLCDPNPDD 135
Query: 55 PANSEAARMFSENKREYNRRVREIVEQ 81
P E AR++ ++ +YNR RE ++
Sbjct: 136 PLVPEIARIYKTDREKYNRIAREWTQK 162
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 68.9 bits (167), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 55/87 (63%), Gaps = 7/87 (8%)
Query: 2 TDFKFQFCLV--LAKVY-----ADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 54
TD+ F+ V ++Y ++GSI LDIL++QWSP ++ +L SI SLLCDPNP+
Sbjct: 58 TDYPFKPPKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDD 117
Query: 55 PANSEAARMFSENKREYNRRVREIVEQ 81
P E AR++ ++ +YNR RE ++
Sbjct: 118 PLVPEIARIYKTDRDKYNRISREWTQK 144
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 66.2 bits (160), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 46/79 (58%), Gaps = 5/79 (6%)
Query: 4 FKFQFCLVLAKVY-----ADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANS 58
FK + KVY +G ICLDIL++QWSP ++ +L SI SLL DPNP+ P +
Sbjct: 65 FKAPRVTFMTKVYHPNINKNGVICLDILKDQWSPALTLSRVLLSISSLLTDPNPSDPLDP 124
Query: 59 EAARMFSENKREYNRRVRE 77
E A + NK+++ RE
Sbjct: 125 EVANVLRANKKQFEDTARE 143
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 163
Score = 65.1 bits (157), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 7/83 (8%)
Query: 2 TDFKFQFCLV--LAKVY-----ADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 54
TD+ F+ V ++Y ++GSICLDIL++QWSP ++ +L SI SLL DPNP+
Sbjct: 58 TDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSISSLLTDPNPDD 117
Query: 55 PANSEAARMFSENKREYNRRVRE 77
P E A ++ ++ Y RE
Sbjct: 118 PLVPEIAHVYKTDRSRYELSARE 140
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 65.1 bits (157), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 44/72 (61%)
Query: 6 FQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFS 65
F + + + G+ICLDIL++QWSP ++ +L SI SLL DPNP+ P E A ++
Sbjct: 89 FTTKIYHPNINSQGAICLDILKDQWSPALTISKVLLSISSLLTDPNPDDPLVPEIAHLYK 148
Query: 66 ENKREYNRRVRE 77
++ Y++ RE
Sbjct: 149 SDRMRYDQTARE 160
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 5 KFQFCLVLAKVYADGSICLDILQNQ--WSPIYDVAAILTSIQSLLCDPNPNSPANSEAAR 62
+F L VY G++CL IL + W P + IL IQ LL DPN SPA +EA
Sbjct: 82 RFTPPLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYT 141
Query: 63 MFSENKREYNRRVR 76
MF ++K EY +RVR
Sbjct: 142 MFKKDKVEYEKRVR 155
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 63.2 bits (152), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 36/49 (73%)
Query: 19 GSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSEN 67
G+ICLD+L+N+WSP + L SIQ+LL DP P+ P ++E A+M+ EN
Sbjct: 105 GAICLDVLKNEWSPALTIRTALLSIQALLSDPQPDDPQDAEVAKMYKEN 153
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 62.4 bits (150), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 42/59 (71%), Gaps = 1/59 (1%)
Query: 19 GSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 77
G+ICLDIL+ W+ YDV IL S+QSLL +PN SP N++AA M+S N+ EY + + E
Sbjct: 90 GNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMWS-NQTEYKKVLHE 147
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 62.4 bits (150), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 5 KFQFCLVLAKVYADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAAR 62
KF VY G+ICL IL W P + I+ +Q LL PNPNSPA A R
Sbjct: 78 KFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWR 137
Query: 63 MFSENKREYNRRV 75
FS NK EY+++V
Sbjct: 138 SFSRNKAEYDKKV 150
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 62.4 bits (150), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 5 KFQFCLVLAKVYADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAAR 62
KF VY G+ICL IL W P + I+ +Q LL PNPNSPA A R
Sbjct: 76 KFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWR 135
Query: 63 MFSENKREYNRRV 75
FS NK EY+++V
Sbjct: 136 SFSRNKAEYDKKV 148
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 5 KFQFCLVLAKVYADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAAR 62
KF+ L VY G++CL IL+ W P + IL IQ LL +PN SPA +EA
Sbjct: 79 KFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQSPAQAEAYT 138
Query: 63 MFSENKREYNRRVR 76
++ +N+ EY +RVR
Sbjct: 139 IYCQNRVEYEKRVR 152
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 5 KFQFCLVLAKVYADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAAR 62
KF+ L +VY G++CL IL+ W P + IL IQ LL +PN PA +EA
Sbjct: 79 KFEPPLFHPQVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYT 138
Query: 63 MFSENKREYNRRVR 76
++ +N+ EY +RVR
Sbjct: 139 IYCQNRVEYEKRVR 152
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 5 KFQFCLVLAKVYADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAAR 62
KF+ L VY G++CL IL+ W P + IL IQ LL +PN +PA +EA
Sbjct: 79 KFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQAPAQAEAYT 138
Query: 63 MFSENKREYNRRVR 76
++ +N+ EY +RVR
Sbjct: 139 IYCQNRVEYEKRVR 152
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 51/87 (58%), Gaps = 7/87 (8%)
Query: 2 TDFKFQFCLV--LAKVY-----ADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 54
TD+ F+ + K+Y A+G+ICLDIL++QWSP ++ +L SI SLL D NP+
Sbjct: 59 TDYPFKPPKISFTTKIYHPNINANGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDD 118
Query: 55 PANSEAARMFSENKREYNRRVREIVEQ 81
P E A ++ ++ +Y RE ++
Sbjct: 119 PLVPEIAHIYKTDRPKYEATAREWTKK 145
>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12
pdb|3O2U|B Chain B, S. Cerevisiae Ubc12
Length = 190
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 39/58 (67%)
Query: 19 GSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 76
G++CL+IL+ WSP D+ +I+T + L +PNPN P N +AA++ E ++E+ VR
Sbjct: 114 GNVCLNILREDWSPALDLQSIITGLLFLFLEPNPNDPLNKDAAKLLCEGEKEFAEAVR 171
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 5 KFQFCLVLAKVYADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAAR 62
KF+ L VY G++CL IL+ W P + IL IQ LL +PN PA +EA
Sbjct: 76 KFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYT 135
Query: 63 MFSENKREYNRRVR 76
++ +N+ EY +RVR
Sbjct: 136 IYCQNRVEYEKRVR 149
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 5 KFQFCLVLAKVYADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAAR 62
KF+ L VY G++CL IL+ W P + IL IQ LL +PN PA +EA
Sbjct: 79 KFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYT 138
Query: 63 MFSENKREYNRRVR 76
++ +N+ EY +RVR
Sbjct: 139 IYCQNRVEYEKRVR 152
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 5 KFQFCLVLAKVYADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAAR 62
KF+ L VY G++CL IL+ W P + IL IQ LL +PN PA +EA
Sbjct: 78 KFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYT 137
Query: 63 MFSENKREYNRRVR 76
++ +N+ EY +RVR
Sbjct: 138 IYCQNRVEYEKRVR 151
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 159
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 5 KFQFCLVLAKVYADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAAR 62
KF+ L VY G++CL IL+ W P + IL IQ LL +PN PA +EA
Sbjct: 77 KFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYT 136
Query: 63 MFSENKREYNRRVR 76
++ +N+ EY +RVR
Sbjct: 137 IYCQNRVEYEKRVR 150
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 5 KFQFCLVLAKVYADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAAR 62
KF+ L VY G++CL IL+ W P + IL IQ LL +PN PA +EA
Sbjct: 81 KFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYT 140
Query: 63 MFSENKREYNRRVR 76
++ +N+ EY +RVR
Sbjct: 141 IYCQNRVEYEKRVR 154
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 5 KFQFCLVLAKVYADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAAR 62
KF+ L VY G++CL IL+ W P + IL IQ LL +PN PA +EA
Sbjct: 78 KFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYT 137
Query: 63 MFSENKREYNRRVR 76
++ +N+ EY +RVR
Sbjct: 138 IYCQNRVEYEKRVR 151
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 58.9 bits (141), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 38/55 (69%)
Query: 19 GSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNR 73
G+ICLDIL+N WSP+ + + L S+Q+LL P PN P ++E A+ + ++ +N+
Sbjct: 84 GAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNK 138
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme,
Ubc1
Length = 215
Score = 58.5 bits (140), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 38/55 (69%)
Query: 19 GSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNR 73
G+ICLDIL+N WSP+ + + L S+Q+LL P PN P ++E A+ + ++ +N+
Sbjct: 85 GAICLDILRNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNK 139
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
pdb|1I7K|B Chain B, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
Length = 179
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
Query: 19 GSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREI 78
G+I LDIL+ +WS +YDV IL SIQSLL +PN +SP N+ AA ++ +N + + ++E
Sbjct: 111 GNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELW-KNPTAFKKYLQET 169
Query: 79 VEQSWTA 85
+ T+
Sbjct: 170 YSKQVTS 176
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 34/50 (68%)
Query: 19 GSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENK 68
G+ICLDIL+++WSP + L SIQ++L DP P P ++E A+M EN
Sbjct: 127 GAICLDILKHEWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMMIENH 176
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 17 ADGSICLDILQNQWSPIYDVAAILTS-IQSLLCDPNPNSPANSEAARMFSENKREYNRRV 75
A G++CLD++ W+ +YD+ I S + LL PNP P N +AA M+ EY +++
Sbjct: 101 ASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKI 160
Query: 76 REIVEQSWTAD 86
+E +++ T +
Sbjct: 161 KEYIQKYATEE 171
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 38/66 (57%)
Query: 15 VYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRR 74
V A+G IC+++L+ W+ + +L +I+ LL PNP S N EA R+ EN EY R
Sbjct: 90 VGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAAR 149
Query: 75 VREIVE 80
R + E
Sbjct: 150 ARLLTE 155
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Query: 12 LAKVYAD-----GSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSE 66
L K+Y G ICLDIL+++WSP + +L SIQ+LL P P+ P +S+ A F +
Sbjct: 70 LTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHFKQ 129
Query: 67 NKREYNRRVRE 77
+K + R+
Sbjct: 130 DKNDAEHVARQ 140
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Query: 12 LAKVYAD-----GSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSE 66
L K+Y G ICLDIL+++WSP + +L SIQ+LL P P+ P +S+ A F +
Sbjct: 70 LTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHFKQ 129
Query: 67 NKREYNRRVRE 77
+K + R+
Sbjct: 130 DKNDAEHVARQ 140
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 5 KFQFCLVLAKVYADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAAR 62
KF+ L VY G++ L IL+ W P + IL IQ LL +PN PA +EA
Sbjct: 76 KFEPPLFHPNVYPSGTVXLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYT 135
Query: 63 MFSENKREYNRRVR 76
++ +N+ EY +RVR
Sbjct: 136 IYXQNRVEYEKRVR 149
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme
Pf10_0330, Putative Homologue Of Human Ube2h
Length = 152
Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 17 ADGSICLDILQNQWSPIYDVAAIL-TSIQSLLCDPNPNSPANSEAARMFSENKREYNRRV 75
A GS+CLD++ W+P+Y + + + LL PNP+ P NS+AA + ++K Y +V
Sbjct: 79 ASGSVCLDVINQTWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAASLLMKDKNIYEEKV 138
Query: 76 REIVE 80
+E V+
Sbjct: 139 KEYVK 143
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 5 KFQFCLVLAKVYADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAAR 62
KF+ L V G++CL IL+ W P + IL IQ LL +PN PA +EA
Sbjct: 79 KFEPPLFHPNVAPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYT 138
Query: 63 MFSENKREYNRRVR 76
++ +N+ EY +RVR
Sbjct: 139 IYCQNRVEYEKRVR 152
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 5 KFQFCLVLAKVYADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAAR 62
KF+ L VY G++ L IL+ W P + IL IQ LL +PN PA +EA
Sbjct: 76 KFEPPLFHPNVYPSGTVSLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYT 135
Query: 63 MFSENKREYNRRVR 76
++ +N+ EY +RVR
Sbjct: 136 IYCQNRVEYEKRVR 149
>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding
Domain In Nedd8's E1
Length = 160
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 38/68 (55%)
Query: 18 DGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 77
+G++CL+IL+ W P+ + +I+ +Q L +PNP P N EAA + N+R + + V+
Sbjct: 84 EGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQR 143
Query: 78 IVEQSWTA 85
+
Sbjct: 144 SXRGGYIG 151
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 55.1 bits (131), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 12 LAKVYAD-----GSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSE 66
L K+Y G ICLD+L+ WSP + +L SIQ+LL PNPN P ++ A + +
Sbjct: 72 LTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIK 131
Query: 67 NKREYNRRVRE 77
N++ + RE
Sbjct: 132 NEQGAKAKARE 142
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 55.1 bits (131), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 12 LAKVYAD-----GSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSE 66
L K+Y G ICLD+L+ WSP + +L SIQ+LL PNPN P ++ A + +
Sbjct: 74 LTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIK 133
Query: 67 NKREYNRRVRE 77
N++ + RE
Sbjct: 134 NEQGAKAKARE 144
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 13/78 (16%)
Query: 18 DGSICLDILQN-------------QWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMF 64
+G++C+ IL + +W P++ V IL S+ S+L DPN SPAN +AA+M
Sbjct: 84 EGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESPANVDAAKMQ 143
Query: 65 SENKREYNRRVREIVEQS 82
EN E+ ++V + V +S
Sbjct: 144 RENYAEFKKKVAQCVRRS 161
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Ube2g2
Length = 167
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 47/81 (58%), Gaps = 13/81 (16%)
Query: 15 VYADGSICLDILQ-------------NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAA 61
+Y DG +C+ IL +WSP+ V IL S+ S+L +PN S AN +A+
Sbjct: 84 IYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDAS 143
Query: 62 RMFSENKREYNRRVREIVEQS 82
+M+ +++ ++ + ++IV++S
Sbjct: 144 KMWRDDREQFYKIAKQIVQKS 164
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
pdb|3FSH|B Chain B, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
Length = 168
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 47/81 (58%), Gaps = 13/81 (16%)
Query: 15 VYADGSICLDILQ-------------NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAA 61
+Y DG +C+ IL +WSP+ V IL S+ S+L +PN S AN +A+
Sbjct: 85 IYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDAS 144
Query: 62 RMFSENKREYNRRVREIVEQS 82
+M+ +++ ++ + ++IV++S
Sbjct: 145 KMWRDDREQFYKIAKQIVQKS 165
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|C Chain C, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
Length = 170
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 47/81 (58%), Gaps = 13/81 (16%)
Query: 15 VYADGSICLDILQ-------------NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAA 61
+Y DG +C+ IL +WSP+ V IL S+ S+L +PN S AN +A+
Sbjct: 87 IYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDAS 146
Query: 62 RMFSENKREYNRRVREIVEQS 82
+M+ +++ ++ + ++IV++S
Sbjct: 147 KMWRDDREQFYKIAKQIVQKS 167
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain
Of Gp78 At 1.8-A Resolution
Length = 164
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 47/81 (58%), Gaps = 13/81 (16%)
Query: 15 VYADGSICLDILQ-------------NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAA 61
+Y DG +C+ IL +WSP+ V IL S+ S+L +PN S AN +A+
Sbjct: 81 IYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDAS 140
Query: 62 RMFSENKREYNRRVREIVEQS 82
+M+ +++ ++ + ++IV++S
Sbjct: 141 KMWRDDREQFYKIAKQIVQKS 161
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 40/72 (55%)
Query: 6 FQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFS 65
F+ + + + G ICLDIL++ WSP ++ +L SI SLL D NP P A +
Sbjct: 116 FRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYM 175
Query: 66 ENKREYNRRVRE 77
N+ E++R R+
Sbjct: 176 TNRAEHDRMARQ 187
>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 180
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 38/68 (55%)
Query: 18 DGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 77
+G++ L+IL+ W P+ + +I+ +Q L +PNP P N EAA + N+R + + V+
Sbjct: 104 EGNVALNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQR 163
Query: 78 IVEQSWTA 85
+ +
Sbjct: 164 SMRGGYIG 171
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 53.1 bits (126), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 40/72 (55%)
Query: 6 FQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFS 65
F+ + + + G ICLDIL++ WSP ++ +L SI SLL D NP P A +
Sbjct: 71 FRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYM 130
Query: 66 ENKREYNRRVRE 77
N+ E++R R+
Sbjct: 131 TNRAEHDRMARQ 142
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 19 GSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENK 68
G ICLDIL+++WSP + +L SIQ+LL PNP+ P ++ A + N+
Sbjct: 82 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNE 131
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 19 GSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENK 68
G ICLDIL+++WSP + +L SIQ+LL PNP+ P ++ A + N+
Sbjct: 84 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNE 133
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 155
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 19 GSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENK 68
G ICLDIL+++WSP + +L SIQ+LL PNP+ P ++ A + N+
Sbjct: 87 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNE 136
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 52.0 bits (123), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 19 GSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENK 68
G ICLDIL+++WSP + +L SIQ+LL PNP+ P ++ A + N+
Sbjct: 86 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNE 135
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 52.0 bits (123), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 19 GSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENK 68
G ICLDIL+++WSP + +L SIQ+LL PNP+ P ++ A + N+
Sbjct: 89 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNE 138
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 12 LAKVYAD-----GSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSE 66
L K+Y G I LD+L+ WSP + +L SIQ+LL PNPN P ++ A + +
Sbjct: 72 LTKIYHPAIDRLGRISLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIK 131
Query: 67 NKREYNRRVRE 77
N++ + RE
Sbjct: 132 NEQGAKAKARE 142
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 12 LAKVYAD-----GSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSE 66
L K+Y G I LD+L+ WSP + +L SIQ+LL PNPN P ++ A + +
Sbjct: 72 LTKIYHPNIDRLGRISLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIK 131
Query: 67 NKREYNRRVRE 77
N++ + RE
Sbjct: 132 NEQGAKAKARE 142
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 4 FKFQFCLVLAKVYADGSICLDILQ----NQWSPIYDVAAILTSIQSLLCDPNPNSPANSE 59
+F + + + G ICLD+L+ W P ++A +LTSIQ L+ +PNP+ P ++
Sbjct: 70 IRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMAD 129
Query: 60 AARMFSENKREYNRRVREIVEQ 81
+ F NK + + R+ E+
Sbjct: 130 ISSEFKYNKPAFLKNARQWTEK 151
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 13/86 (15%)
Query: 4 FKFQFCLVLAKVYADGSICLDILQN-------------QWSPIYDVAAILTSIQSLLCDP 50
F ++ +Y +G +C+ IL + +WSP+ V IL S+ S+L +P
Sbjct: 71 LTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEP 130
Query: 51 NPNSPANSEAARMFSENKREYNRRVR 76
N S AN +A ++ +N+ E+ R+V+
Sbjct: 131 NIESGANIDACILWRDNRPEFERQVK 156
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 48.9 bits (115), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 14/86 (16%)
Query: 4 FKFQFCLVLAKVYADGSICLDIL-------------QNQWSPIYDVAAILTSIQSLLCDP 50
KF + V +G +C+ IL + +W PI+ V I+ S+ S+L DP
Sbjct: 84 MKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADP 143
Query: 51 NPNSPANSEAARMFSENKR-EYNRRV 75
N +SPAN +AA+ + E++ E+ R+V
Sbjct: 144 NGDSPANVDAAKEWREDRNGEFKRKV 169
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 9/92 (9%)
Query: 2 TDFKFQ-----FCLVLAKVYAD---GSICLDILQNQWSPIYDVAAIL-TSIQSLLCDPNP 52
+D+ F+ FC + D GS+CLD++ W+P+Y + I + LL PNP
Sbjct: 65 SDYPFKSPSIGFCNRILHPNVDERSGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNP 124
Query: 53 NSPANSEAARMFSENKREYNRRVREIVEQSWT 84
+ P N +AA + ++ ++ +RE V T
Sbjct: 125 SDPLNVQAAHLLHADRVGFDALLREHVSTHAT 156
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 19/95 (20%)
Query: 4 FKFQFCLVLAKVYADGSICLDILQ-------------NQWSPIYDVAAILTSIQSLLCDP 50
F+F + +Y G +C+ IL +W+P +V IL S+ SLL +P
Sbjct: 74 FRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEP 133
Query: 51 NPNSPANSEAARMFSENK------REYNRRVREIV 79
N SPAN +A+ M+ + K REY +R+ V
Sbjct: 134 NTFSPANVDASVMYRKWKESKGKDREYTDIIRKQV 168
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 19/95 (20%)
Query: 4 FKFQFCLVLAKVYADGSICLDILQ-------------NQWSPIYDVAAILTSIQSLLCDP 50
F+F + +Y G +C+ IL +W+P +V IL S+ SLL +P
Sbjct: 71 FRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEP 130
Query: 51 NPNSPANSEAARMFSENK------REYNRRVREIV 79
N SPAN +A+ M+ + K REY +R+ V
Sbjct: 131 NTFSPANVDASVMYRKWKESKGKDREYTDIIRKQV 165
>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme
Length = 169
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 19 GSICLDILQN--QWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 76
G C+D L N +W+ Y +++IL ++Q +L +P +P N EAAR+ +++ Y +R
Sbjct: 105 GQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLYRTILR 164
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|D Chain D, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SY2|C Chain C, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|D Chain D, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 156
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/77 (19%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 6 FQFCLVLAKVYADGSICLDILQNQ-WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMF 64
F+ + + G +CL ++ + W P ++ S+ +L+ DP P P ++ A +
Sbjct: 72 FKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEY 131
Query: 65 SENKREYNRRVREIVEQ 81
S++++++ + E ++
Sbjct: 132 SKDRKKFCKNAEEFTKK 148
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 154
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/77 (19%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 6 FQFCLVLAKVYADGSICLDILQNQ-WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMF 64
F+ + + G +CL ++ + W P ++ S+ +L+ DP P P ++ A +
Sbjct: 70 FKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEY 129
Query: 65 SENKREYNRRVREIVEQ 81
S++++++ + E ++
Sbjct: 130 SKDRKKFCKNAEEFTKK 146
>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
pdb|2A7L|B Chain B, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
Length = 136
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 11 VLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLL 47
V VY++G ICL IL WSP V ++ SI S+L
Sbjct: 99 VHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISML 135
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 34.3 bits (77), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 34/58 (58%)
Query: 19 GSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 76
G+ICLDIL++QW+ + +L S+Q+LL P+ P ++ A + +N + + R
Sbjct: 142 GAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTAR 199
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 33.9 bits (76), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 34/58 (58%)
Query: 19 GSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 76
G+ICLDIL++QW+ + +L S+Q+LL P+ P ++ A + +N + + R
Sbjct: 93 GAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTAR 150
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 33.9 bits (76), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 34/58 (58%)
Query: 19 GSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 76
G+ICLDIL++QW+ + +L S+Q+LL P+ P ++ A + +N + + R
Sbjct: 106 GAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTAR 163
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 33.9 bits (76), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 34/58 (58%)
Query: 19 GSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 76
G+ICLDIL++QW+ + +L S+Q+LL P+ P ++ A + +N + + R
Sbjct: 90 GAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTAR 147
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 33.9 bits (76), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 34/58 (58%)
Query: 19 GSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 76
G+ICLDIL++QW+ + +L S+Q+LL P+ P ++ A + +N + + R
Sbjct: 91 GAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTAR 148
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure
Length = 172
Score = 33.5 bits (75), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 17 ADGSICLDILQ-NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMF 64
A G ICL+IL+ +W+P++D+ + ++ LL +P +SP + + +
Sbjct: 99 ATGEICLNILKPEEWTPVWDLLHCVHAVWRLLREPVSDSPLDVDIGNII 147
>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
pdb|3CEG|B Chain B, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
Length = 323
Score = 33.1 bits (74), Expect = 0.044, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 12/75 (16%)
Query: 15 VYADGSICLDIL-------QNQWSP-IYDVAAILTSIQSLL--CDPNPNSPA--NSEAAR 62
+Y DG +CL IL + +W+P +L S+QSL+ +P N P S
Sbjct: 162 LYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYERSRGTP 221
Query: 63 MFSENKREYNRRVRE 77
+++ REY+ +R+
Sbjct: 222 SGTQSSREYDGNIRQ 236
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure
Length = 172
Score = 32.7 bits (73), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 17 ADGSICLDILQ-NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMF 64
A G ICL+IL+ +W+P++D+ + ++ LL +P +SP + + +
Sbjct: 99 ATGEICLNILKPEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGNII 147
>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|B Chain B, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|C Chain C, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|D Chain D, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
Length = 136
Score = 32.7 bits (73), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 13 AKVYADGSICLDILQNQWSPIYDVAAILTSIQSLL 47
VY++G ICL +L + ++P ++ ++ SI S+L
Sbjct: 96 THVYSNGDICLSVLGDDYNPSLSISGLILSIISML 130
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure
Length = 172
Score = 32.3 bits (72), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 17 ADGSICLDILQ-NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMF 64
A G ICL+IL+ +W+P++D+ + ++ LL +P +SP + + +
Sbjct: 99 ATGEICLNILKPEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGAII 147
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8
pdb|1WZV|B Chain B, Crystal Structure Of Ubch8
pdb|1WZW|A Chain A, Crystal Structure Of Ubch8
Length = 155
Score = 32.3 bits (72), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Query: 5 KFQFCLVLAKVYADGSICLDILQNQ-WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARM 63
KF + V +G ICL I+ ++ W P +L ++ L+ PN P + A +
Sbjct: 71 KFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADL 130
Query: 64 FSENKREYNRRVREIV 79
++N + + E
Sbjct: 131 LTQNPELFRKNAEEFT 146
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex
Length = 152
Score = 32.0 bits (71), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Query: 5 KFQFCLVLAKVYADGSICLDILQNQ-WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARM 63
KF + V +G ICL I+ ++ W P +L ++ L+ PN P + A +
Sbjct: 68 KFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADL 127
Query: 64 FSENKREYNRRVREIV 79
++N + + E
Sbjct: 128 LTQNPELFRKNAEEFT 143
>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2
Length = 125
Score = 31.6 bits (70), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 13 AKVYADGSICLDILQNQWSPIYDVAAILTSIQSLL 47
VY++G ICL +L + ++P ++ ++ SI S+L
Sbjct: 82 THVYSNGDICLSLLGDDYNPSLSISGLVLSIISML 116
>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity
To Cullin Modification
Length = 167
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 19 GSICLDILQNQ------WSPIYDVAAILTSIQSLLCDP-NPNSPANSEAARMFSENKREY 71
G ICL +L+ W+P + ++ + SL D N + P N EAA +K ++
Sbjct: 95 GEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDF 154
Query: 72 NRRVREIVEQ 81
+V + +++
Sbjct: 155 RNKVDDYIKR 164
>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8-
Conjugating Enzyme Nce2
Length = 173
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 19 GSICLDILQNQ------WSPIYDVAAILTSIQSLLCDP-NPNSPANSEAARMFSENKREY 71
G ICL +L+ W+P + ++ + SL D N + P N EAA +K ++
Sbjct: 95 GEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDF 154
Query: 72 NRRVREIVEQ 81
+V + +++
Sbjct: 155 RNKVDDYIKR 164
>pdb|3QI8|B Chain B, Evolved Variant Of Cytochrome P450 (Bm3, Cyp102a1)
pdb|3QI8|A Chain A, Evolved Variant Of Cytochrome P450 (Bm3, Cyp102a1)
Length = 472
Score = 26.2 bits (56), Expect = 5.4, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 40 LTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIV 79
L + + L NP+ PA E R F E+ + N V +I+
Sbjct: 182 LDEVMNKLQRANPDDPAYDENKRQFQEDIKVMNDLVDKII 221
>pdb|3CBD|A Chain A, Directed Evolution Of Cytochrome P450 Bm3, To Octane
Monoxygenase 139-3
pdb|3CBD|B Chain B, Directed Evolution Of Cytochrome P450 Bm3, To Octane
Monoxygenase 139-3
Length = 455
Score = 25.8 bits (55), Expect = 5.8, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 40 LTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIV 79
L + + L NP+ PA E R F E+ + N V +I+
Sbjct: 181 LDEVMNKLQRANPDDPAYDENKRQFQEDIKVMNDLVDKII 220
>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2
pdb|2F4W|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 J2
Length = 187
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 21 ICL---DILQNQWSPIYDVAAILTSIQSLLCDPNPN 53
+CL D + W+P + V+ ILT + S + + P
Sbjct: 95 LCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPT 130
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.132 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,526,427
Number of Sequences: 62578
Number of extensions: 77769
Number of successful extensions: 323
Number of sequences better than 100.0: 107
Number of HSP's better than 100.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 204
Number of HSP's gapped (non-prelim): 107
length of query: 86
length of database: 14,973,337
effective HSP length: 54
effective length of query: 32
effective length of database: 11,594,125
effective search space: 371012000
effective search space used: 371012000
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)