Query 034713
Match_columns 86
No_of_seqs 121 out of 1084
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 05:43:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034713.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034713hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0417 Ubiquitin-protein liga 100.0 8.1E-38 1.8E-42 196.8 8.0 85 1-85 64-148 (148)
2 COG5078 Ubiquitin-protein liga 100.0 7.5E-36 1.6E-40 190.5 8.5 84 1-84 69-152 (153)
3 PTZ00390 ubiquitin-conjugating 100.0 4.6E-34 9.9E-39 182.7 10.0 85 1-85 65-149 (152)
4 PLN00172 ubiquitin conjugating 100.0 1.9E-33 4.2E-38 178.9 9.7 84 1-84 64-147 (147)
5 KOG0419 Ubiquitin-protein liga 100.0 1.1E-33 2.3E-38 175.1 8.1 86 1-86 67-152 (152)
6 KOG0424 Ubiquitin-protein liga 100.0 1.6E-31 3.6E-36 167.3 7.8 84 1-84 72-157 (158)
7 KOG0425 Ubiquitin-protein liga 100.0 1.1E-30 2.4E-35 165.5 8.6 84 1-84 69-165 (171)
8 KOG0418 Ubiquitin-protein liga 100.0 1.2E-30 2.6E-35 169.4 7.3 85 1-85 69-154 (200)
9 KOG0420 Ubiquitin-protein liga 100.0 2.8E-30 6E-35 165.7 6.1 83 1-83 92-174 (184)
10 KOG0422 Ubiquitin-protein liga 100.0 3.8E-29 8.2E-34 156.0 8.7 85 1-85 65-150 (153)
11 smart00212 UBCc Ubiquitin-conj 100.0 4.3E-28 9.4E-33 153.4 9.8 83 1-83 62-145 (145)
12 PF00179 UQ_con: Ubiquitin-con 100.0 2.5E-28 5.5E-33 153.6 8.5 79 1-79 61-140 (140)
13 KOG0416 Ubiquitin-protein liga 100.0 4.4E-29 9.6E-34 160.1 5.0 85 1-85 63-149 (189)
14 cd00195 UBCc Ubiquitin-conjuga 99.9 2.8E-27 6.1E-32 149.0 8.3 79 1-79 62-141 (141)
15 KOG0421 Ubiquitin-protein liga 99.9 2E-27 4.4E-32 149.2 5.1 80 1-81 92-171 (175)
16 KOG0426 Ubiquitin-protein liga 99.9 2.8E-25 6.1E-30 137.9 8.0 83 1-83 68-163 (165)
17 KOG0423 Ubiquitin-protein liga 99.9 1.5E-24 3.3E-29 139.9 4.6 84 1-84 73-156 (223)
18 KOG0429 Ubiquitin-conjugating 99.6 6.4E-16 1.4E-20 103.2 7.7 84 1-84 83-170 (258)
19 KOG0427 Ubiquitin conjugating 99.6 2.2E-15 4.8E-20 93.7 5.0 59 1-59 77-137 (161)
20 KOG0895 Ubiquitin-conjugating 98.0 5.6E-06 1.2E-10 65.6 3.7 48 2-49 915-971 (1101)
21 KOG0894 Ubiquitin-protein liga 97.6 0.00043 9.3E-09 46.8 6.8 45 2-50 69-118 (244)
22 KOG0895 Ubiquitin-conjugating 97.4 0.00015 3.2E-09 57.9 3.8 49 1-49 345-404 (1101)
23 PF14461 Prok-E2_B: Prokaryoti 96.9 0.0035 7.6E-08 39.1 5.5 39 11-49 65-106 (133)
24 KOG0897 Predicted ubiquitin-co 96.6 0.0035 7.6E-08 38.5 3.6 68 10-78 32-109 (122)
25 PF05743 UEV: UEV domain; Int 96.2 0.0049 1.1E-07 38.1 2.8 36 12-48 80-116 (121)
26 KOG0896 Ubiquitin-conjugating 96.1 0.0076 1.6E-07 38.0 3.1 50 1-50 72-124 (138)
27 KOG2391 Vacuolar sorting prote 94.6 0.046 1E-06 39.3 3.5 38 12-50 100-138 (365)
28 KOG0428 Non-canonical ubiquiti 94.6 0.029 6.3E-07 38.8 2.4 31 18-48 88-121 (314)
29 PF14460 Prok-E2_D: Prokaryoti 86.1 1.5 3.2E-05 28.6 3.8 41 7-50 89-133 (175)
30 PF14457 Prok-E2_A: Prokaryoti 76.6 2.6 5.6E-05 27.3 2.4 38 12-49 83-126 (162)
31 TIGR03737 PRTRC_B PRTRC system 68.9 11 0.00023 25.9 4.0 38 8-49 131-172 (228)
32 KOG0177 20S proteasome, regula 65.4 3.8 8.1E-05 27.5 1.2 28 18-45 135-162 (200)
33 PF12018 DUF3508: Domain of un 60.8 16 0.00035 25.5 3.8 30 55-84 238-267 (281)
34 PF02563 Poly_export: Polysacc 59.1 17 0.00037 20.4 3.1 35 15-49 35-69 (82)
35 cd01145 TroA_c Periplasmic bin 57.0 30 0.00066 22.6 4.5 47 30-82 111-157 (203)
36 PF00779 BTK: BTK motif; Inte 56.6 3.3 7.1E-05 19.7 -0.2 16 10-25 2-18 (32)
37 KOG3203 Mitochondrial/chloropl 56.5 7 0.00015 25.4 1.3 15 8-23 49-63 (165)
38 PF11333 DUF3135: Protein of u 54.1 41 0.00089 19.4 4.1 28 57-84 6-33 (83)
39 cd01020 TroA_b Metal binding p 50.2 49 0.0011 22.6 4.8 47 30-82 98-144 (264)
40 cd01018 ZntC Metal binding pro 50.0 47 0.001 22.6 4.6 47 30-82 115-161 (266)
41 PF13950 Epimerase_Csub: UDP-g 48.8 23 0.00049 19.1 2.4 18 29-46 37-54 (62)
42 cd01019 ZnuA Zinc binding prot 44.9 54 0.0012 22.7 4.3 48 30-83 124-171 (286)
43 KOG1222 Kinesin associated pro 44.7 8 0.00017 30.0 0.2 61 10-80 210-278 (791)
44 cd01016 TroA Metal binding pro 43.7 65 0.0014 22.2 4.6 46 30-81 104-149 (276)
45 PF01175 Urocanase: Urocanase; 43.2 47 0.001 25.7 4.0 28 57-84 271-298 (546)
46 PRK05414 urocanate hydratase; 39.0 57 0.0012 25.3 3.9 29 56-84 280-308 (556)
47 TIGR01228 hutU urocanate hydra 38.9 58 0.0012 25.2 3.9 28 56-83 271-298 (545)
48 smart00107 BTK Bruton's tyrosi 37.3 14 0.00031 17.9 0.4 15 10-24 7-22 (36)
49 PRK09545 znuA high-affinity zi 37.0 83 0.0018 22.2 4.4 47 30-82 148-194 (311)
50 cd01137 PsaA Metal binding pro 36.0 1E+02 0.0022 21.4 4.6 47 30-82 120-166 (287)
51 cd01017 AdcA Metal binding pro 36.0 1E+02 0.0022 21.1 4.6 47 30-82 116-162 (282)
52 COG1225 Bcp Peroxiredoxin [Pos 35.0 62 0.0013 20.9 3.2 30 15-46 126-155 (157)
53 PF11745 DUF3304: Protein of u 32.4 20 0.00043 21.7 0.6 20 18-37 50-69 (118)
54 PF10084 DUF2322: Uncharacteri 31.5 14 0.0003 22.3 -0.3 6 11-16 78-83 (100)
55 KOG0662 Cyclin-dependent kinas 31.4 53 0.0012 22.5 2.5 53 1-53 169-225 (292)
56 COG0803 LraI ABC-type metal io 31.2 1.1E+02 0.0024 21.4 4.2 47 30-82 136-182 (303)
57 smart00580 PUG domain in prote 30.6 91 0.002 16.5 3.1 28 35-63 2-29 (58)
58 KOG2851 Eukaryotic-type DNA pr 30.4 1.4E+02 0.0031 22.2 4.7 29 18-46 336-369 (412)
59 COG0525 ValS Valyl-tRNA synthe 29.4 2.8E+02 0.006 23.1 6.5 54 31-84 53-122 (877)
60 PF08771 Rapamycin_bind: Rapam 28.8 1.3E+02 0.0028 17.7 4.8 44 35-84 32-76 (100)
61 PF12652 CotJB: CotJB protein; 28.4 1.2E+02 0.0026 17.2 3.9 30 54-83 25-54 (78)
62 TIGR00315 cdhB CO dehydrogenas 28.3 84 0.0018 20.3 3.0 19 29-47 141-160 (162)
63 PF03037 KMP11: Kinetoplastid 28.3 72 0.0016 18.2 2.3 25 54-82 38-62 (90)
64 PF09280 XPC-binding: XPC-bind 27.6 1.1E+02 0.0023 16.4 3.0 21 56-76 34-54 (59)
65 PF05678 VQ: VQ motif; InterP 27.4 37 0.0008 15.9 0.9 18 64-81 8-25 (31)
66 TIGR03772 anch_rpt_subst ancho 27.0 1.7E+02 0.0036 22.3 4.7 45 30-80 314-358 (479)
67 PF01297 TroA: Periplasmic sol 26.4 81 0.0018 21.1 2.8 49 29-83 94-142 (256)
68 cd03763 proteasome_beta_type_7 26.2 27 0.00059 22.5 0.4 25 23-47 135-159 (189)
69 PF15249 GLTSCR1: Glioma tumor 26.2 1.5E+02 0.0033 17.6 5.6 52 31-82 19-75 (109)
70 PF04628 Sedlin_N: Sedlin, N-t 26.1 1.4E+02 0.0031 18.2 3.6 42 32-81 87-132 (132)
71 TIGR03634 arc_protsome_B prote 24.4 32 0.0007 21.9 0.5 27 21-47 135-161 (185)
72 cd01912 proteasome_beta protea 24.3 28 0.00062 22.1 0.2 27 21-47 135-161 (189)
73 COG2987 HutU Urocanate hydrata 24.2 3.4E+02 0.0075 21.0 6.1 27 58-84 282-308 (561)
74 COG3876 Uncharacterized protei 23.8 44 0.00096 24.5 1.1 43 1-43 296-347 (409)
75 cd03761 proteasome_beta_type_5 23.5 35 0.00076 22.0 0.5 26 22-47 135-160 (188)
76 PF07217 Het-C: Heterokaryon i 23.5 2.8E+02 0.0061 22.0 5.3 33 28-61 498-531 (606)
77 COG3977 Alanine-alpha-ketoisov 23.1 45 0.00097 24.5 1.0 21 2-26 226-248 (417)
78 PHA02592 52 DNA topisomerase I 23.1 1.4E+02 0.003 22.5 3.7 26 28-53 167-195 (439)
79 TIGR03027 pepcterm_export puta 22.8 1.2E+02 0.0025 19.2 2.9 35 14-48 24-58 (165)
80 PF08262 Lem_TRP: Leucophaea m 22.6 31 0.00068 12.0 0.1 7 1-7 1-7 (10)
81 cd07981 TAF12 TATA Binding Pro 21.9 1.5E+02 0.0033 16.2 5.1 42 43-84 7-48 (72)
82 cd00392 Ribosomal_L13 Ribosoma 21.4 52 0.0011 20.0 1.0 10 8-17 27-36 (114)
83 PF14798 Ca_hom_mod: Calcium h 20.9 1.2E+02 0.0026 21.1 2.8 31 54-84 207-238 (251)
84 PF03847 TFIID_20kDa: Transcri 20.7 1.7E+02 0.0036 16.1 5.0 43 42-84 4-46 (68)
85 PF09966 DUF2200: Uncharacteri 20.6 37 0.0008 20.7 0.2 18 9-26 61-79 (111)
86 PF07075 DUF1343: Protein of u 20.6 3.6E+02 0.0077 19.9 5.3 46 2-47 254-305 (365)
87 PF15167 DUF4581: Domain of un 20.4 25 0.00055 21.7 -0.5 41 15-55 53-102 (128)
88 smart00803 TAF TATA box bindin 20.4 1.6E+02 0.0035 15.9 3.7 30 55-84 19-48 (65)
89 PF03234 CDC37_N: Cdc37 N term 20.3 39 0.00084 22.3 0.3 7 11-17 20-26 (177)
No 1
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.1e-38 Score=196.84 Aligned_cols=85 Identities=33% Similarity=0.640 Sum_probs=83.3
Q ss_pred CCeEEEecCCccccccCCCceeeccccCCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHH
Q 034713 1 MTDFKFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVE 80 (86)
Q Consensus 1 ~P~v~F~t~i~HPNV~~~G~vcl~~l~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~ 80 (86)
+|+|+|.|+||||||+..|.||+|||+++|+|+++|..||.+|++||.+|++++|++.++|.+|+.|+++|++.||+||+
T Consensus 64 PPkV~F~TkIyHPNI~~~G~IclDILk~~WsPAl~i~~VllsI~sLL~~PnpddPL~~~ia~~~k~d~~~~~~~ARewt~ 143 (148)
T KOG0417|consen 64 PPKVRFLTKIYHPNIDSNGRICLDILKDQWSPALTISKVLLSICSLLSDPNPDDPLVPDIAELYKTDRAKYERTAREWTR 143 (148)
T ss_pred CCceEeecccccCCcCccccchHHhhhccCChhhHHHHHHHHHHHHhcCCCCCccccHHHHHHHHhhHHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhc
Q 034713 81 QSWTA 85 (86)
Q Consensus 81 ~~~~~ 85 (86)
|||++
T Consensus 144 kyA~~ 148 (148)
T KOG0417|consen 144 KYAMG 148 (148)
T ss_pred HHhcC
Confidence 99974
No 2
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.5e-36 Score=190.50 Aligned_cols=84 Identities=43% Similarity=0.793 Sum_probs=82.4
Q ss_pred CCeEEEecCCccccccCCCceeeccccCCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHH
Q 034713 1 MTDFKFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVE 80 (86)
Q Consensus 1 ~P~v~F~t~i~HPNV~~~G~vcl~~l~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~ 80 (86)
.|+|+|.|+||||||+++|.|||++|+++|+|+++|++||.+|+++|.+|++++|+|.+||++|++|+++|.++||++++
T Consensus 69 PPkv~F~t~i~HPNV~~~G~vCLdIL~~~WsP~~~l~sILlsl~slL~~PN~~~Pln~daa~~~~~d~~~y~~~vr~~~~ 148 (153)
T COG5078 69 PPKVRFTTKIFHPNVDPSGNVCLDILKDRWSPVYTLETILLSLQSLLLSPNPDSPLNTEAATLYREDKEEYEKKVREWVK 148 (153)
T ss_pred CCeeeeccCCcCCCcCCCCCChhHHHhCCCCccccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHhCHHHHHHHHHHHHH
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhh
Q 034713 81 QSWT 84 (86)
Q Consensus 81 ~~~~ 84 (86)
+|+.
T Consensus 149 ~~~~ 152 (153)
T COG5078 149 KYAE 152 (153)
T ss_pred Hhcc
Confidence 9986
No 3
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=4.6e-34 Score=182.69 Aligned_cols=85 Identities=29% Similarity=0.550 Sum_probs=83.1
Q ss_pred CCeEEEecCCccccccCCCceeeccccCCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHH
Q 034713 1 MTDFKFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVE 80 (86)
Q Consensus 1 ~P~v~F~t~i~HPNV~~~G~vcl~~l~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~ 80 (86)
+|+|+|.|+||||||+++|.||+++|.++|+|++|+.+||.+|++||.+|++++|+|.+||.+|++|+++|+++||+|++
T Consensus 65 pP~v~F~t~i~HPNV~~~G~iCl~iL~~~W~p~~ti~~iL~~i~~ll~~P~~~~pln~~aa~~~~~d~~~f~~~a~~~~~ 144 (152)
T PTZ00390 65 PPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPEPDDPLDTSVADHFKNNRADAEKVAREWNQ 144 (152)
T ss_pred CCEEEEecCCeeceECCCCeEECccCcccCCCCCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhc
Q 034713 81 QSWTA 85 (86)
Q Consensus 81 ~~~~~ 85 (86)
+|+.+
T Consensus 145 ~~a~~ 149 (152)
T PTZ00390 145 KYAKH 149 (152)
T ss_pred HHhcc
Confidence 99874
No 4
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=1.9e-33 Score=178.94 Aligned_cols=84 Identities=42% Similarity=0.710 Sum_probs=82.0
Q ss_pred CCeEEEecCCccccccCCCceeeccccCCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHH
Q 034713 1 MTDFKFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVE 80 (86)
Q Consensus 1 ~P~v~F~t~i~HPNV~~~G~vcl~~l~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~ 80 (86)
+|+|+|.|+||||||+.+|.||+++|.++|+|++|+++||.+|+++|.+|++++|+|.+||++|.+|+++|.++||+|++
T Consensus 64 pP~v~f~t~i~HPNv~~~G~iCl~il~~~W~p~~ti~~il~~i~~ll~~P~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~ 143 (147)
T PLN00172 64 PPKVQFTTKIYHPNINSNGSICLDILRDQWSPALTVSKVLLSISSLLTDPNPDDPLVPEIARVFKENRSRYEATAREWTQ 143 (147)
T ss_pred CCEEEEecCcccceECCCCEEEcccCcCCCCCcCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhh
Q 034713 81 QSWT 84 (86)
Q Consensus 81 ~~~~ 84 (86)
+|+.
T Consensus 144 ~~a~ 147 (147)
T PLN00172 144 RYAT 147 (147)
T ss_pred HhhC
Confidence 9873
No 5
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-33 Score=175.07 Aligned_cols=86 Identities=72% Similarity=1.087 Sum_probs=83.0
Q ss_pred CCeEEEecCCccccccCCCceeeccccCCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHH
Q 034713 1 MTDFKFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVE 80 (86)
Q Consensus 1 ~P~v~F~t~i~HPNV~~~G~vcl~~l~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~ 80 (86)
.|.|+|.+++|||||+++|.+|||+|...|+|.|++..||.+||+||++|++++|+|.+||.+|.+|+.+|.+++++.++
T Consensus 67 PP~VrFvs~mFHPNvya~G~iClDiLqNrWsp~Ydva~ILtsiQslL~dPn~~sPaN~eAA~Lf~e~~rey~rrVk~~ve 146 (152)
T KOG0419|consen 67 PPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVASILTSIQSLLNDPNPNSPANSEAARLFSENKREYERRVKETVE 146 (152)
T ss_pred CCeeEeeeeccCCCcCCCCcchHHHHhcCCCCchhHHHHHHHHHHHhcCCCCCCcccHHHHHHHhhChHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcC
Q 034713 81 QSWTAD 86 (86)
Q Consensus 81 ~~~~~~ 86 (86)
+++..+
T Consensus 147 qsw~~~ 152 (152)
T KOG0419|consen 147 QSWSDI 152 (152)
T ss_pred HhhccC
Confidence 987653
No 6
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.6e-31 Score=167.25 Aligned_cols=84 Identities=36% Similarity=0.644 Sum_probs=81.5
Q ss_pred CCeEEEecCCccccccCCCceeeccccCC--CCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHH
Q 034713 1 MTDFKFQFCLVLAKVYADGSICLDILQNQ--WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREI 78 (86)
Q Consensus 1 ~P~v~F~t~i~HPNV~~~G~vcl~~l~~~--W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~ 78 (86)
.|+++|.+++|||||+++|.|||++|+++ |+|+.||.+||.+||.||..||+.+|+|.||...|..|+.+|+++||.+
T Consensus 72 PPkckF~~pl~HPNVypsgtVcLsiL~e~~~W~paitikqiL~gIqdLL~~Pn~~~pAq~eA~~~~~~~r~eYekrvr~q 151 (158)
T KOG0424|consen 72 PPKCKFKPPLFHPNVYPSGTVCLSILNEEKDWRPAITIKQILLGIQDLLDTPNITSPAQTEAYTIYCQDRAEYEKRVRAQ 151 (158)
T ss_pred CCccccCCCCcCCCcCCCCcEehhhhccccCCCchhhHHHHHHHHHHHhcCCCCCCchhhHHHHHHhhCHHHHHHHHHHH
Confidence 48999999999999999999999999865 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHhh
Q 034713 79 VEQSWT 84 (86)
Q Consensus 79 ~~~~~~ 84 (86)
+++|+.
T Consensus 152 ak~~a~ 157 (158)
T KOG0424|consen 152 AKEYAK 157 (158)
T ss_pred HHHhcc
Confidence 999985
No 7
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.1e-30 Score=165.49 Aligned_cols=84 Identities=40% Similarity=0.713 Sum_probs=80.4
Q ss_pred CCeEEEecCCccccccCCCceeecccc-------------CCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhC
Q 034713 1 MTDFKFQFCLVLAKVYADGSICLDILQ-------------NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSEN 67 (86)
Q Consensus 1 ~P~v~F~t~i~HPNV~~~G~vcl~~l~-------------~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~ 67 (86)
.|+++|.|+||||||+++|.||.+||. +.|.|..|+++||++|.+||.+||.++|+|.+||+.|++|
T Consensus 69 PP~~rF~s~mwHPNvy~~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~PN~~SPANVDAa~~~Ren 148 (171)
T KOG0425|consen 69 PPTFRFTSKMWHPNVYEDGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSIISMLNSPNDESPANVDAAKEWREN 148 (171)
T ss_pred CCceeeehhhcCCCcCCCCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHHHHHHcCCCCCCccchHHHHHHhhC
Confidence 499999999999999999999999994 5799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhh
Q 034713 68 KREYNRRVREIVEQSWT 84 (86)
Q Consensus 68 ~~~f~~~~~~~~~~~~~ 84 (86)
+++|.+++++++.++.+
T Consensus 149 ~~EykkkV~r~vr~s~e 165 (171)
T KOG0425|consen 149 PEEYKKKVRRCVRRSQE 165 (171)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999998765
No 8
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.2e-30 Score=169.37 Aligned_cols=85 Identities=28% Similarity=0.534 Sum_probs=82.9
Q ss_pred CCeEEEecCCccccccC-CCceeeccccCCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHH
Q 034713 1 MTDFKFQFCLVLAKVYA-DGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIV 79 (86)
Q Consensus 1 ~P~v~F~t~i~HPNV~~-~G~vcl~~l~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~ 79 (86)
+|+|+|.|+||||||++ +|.||||+|++.|++++||+.+|++||++|+.|++.+|.+..+|.+|.+|++-|.+.||.||
T Consensus 69 pPkv~F~TkIwHPnVSs~tGaICLDilkd~Wa~slTlrtvLislQalL~~pEp~dPqDavva~qy~~n~~~F~~TAr~WT 148 (200)
T KOG0418|consen 69 PPKVKFITKIWHPNVSSQTGAICLDILKDQWAASLTLRTVLISLQALLCAPEPKDPQDAVVAEQYVDNYEMFYKTARYWT 148 (200)
T ss_pred CCceeeeeeeecCCCCcccccchhhhhhcccchhhhHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 59999999999999987 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhc
Q 034713 80 EQSWTA 85 (86)
Q Consensus 80 ~~~~~~ 85 (86)
..||.+
T Consensus 149 ~~fA~~ 154 (200)
T KOG0418|consen 149 TEFAGG 154 (200)
T ss_pred HHHhCC
Confidence 999875
No 9
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.8e-30 Score=165.72 Aligned_cols=83 Identities=28% Similarity=0.583 Sum_probs=80.0
Q ss_pred CCeEEEecCCccccccCCCceeeccccCCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHH
Q 034713 1 MTDFKFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVE 80 (86)
Q Consensus 1 ~P~v~F~t~i~HPNV~~~G~vcl~~l~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~ 80 (86)
+|+|+|+|+||||||+.+|.|||+||+++|+|+.+|.+|+.+|+.||.+|+++||+|.+||..++.|++.|..+||...+
T Consensus 92 PPKVkCltkV~HPNId~~GnVCLnILRedW~P~lnL~sIi~GL~~LF~epn~eDpLN~eAA~~l~~n~e~F~~~Vr~~m~ 171 (184)
T KOG0420|consen 92 PPKVKCLTKVYHPNIDLDGNVCLNILREDWRPVLNLNSIIYGLQFLFLEPNPEDPLNKEAAAVLKSNREGFENNVRRAMS 171 (184)
T ss_pred CCeeeeeeccccCCcCCcchHHHHHHHhcCccccchHHHHHHHHHHhccCCCcccccHHHHHHHHhCHHHHHHHHHHHHh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred HHh
Q 034713 81 QSW 83 (86)
Q Consensus 81 ~~~ 83 (86)
.+.
T Consensus 172 gg~ 174 (184)
T KOG0420|consen 172 GGC 174 (184)
T ss_pred cCc
Confidence 654
No 10
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.8e-29 Score=155.96 Aligned_cols=85 Identities=20% Similarity=0.479 Sum_probs=82.2
Q ss_pred CCeEEEecCCccccccCCCceeecccc-CCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHH
Q 034713 1 MTDFKFQFCLVLAKVYADGSICLDILQ-NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIV 79 (86)
Q Consensus 1 ~P~v~F~t~i~HPNV~~~G~vcl~~l~-~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~ 79 (86)
.|+|.|.|+||||||++.|+||+.++. ++|+|++++.+||.+|..++.+|++++|++.++|.+|.+|+..|.++|.++|
T Consensus 65 PP~i~f~tkiYHpNVDe~gqvClPiis~EnWkP~T~teqVlqaLi~liN~P~pe~plr~dlA~ey~~d~~kF~K~Aee~t 144 (153)
T KOG0422|consen 65 PPKIKFKTKIYHPNVDEKGQVCLPIISAENWKPATRTEQVLQALIALINDPEPEHPLRIDLAEEYIKDPKKFVKNAEEFT 144 (153)
T ss_pred CCeeeeeeeeccCCCCCCCceeeeeeecccccCcccHHHHHHHHHHHhcCCCccccchhhHHHHHHHCHHHHHHhHHHHH
Confidence 489999999999999999999999986 8899999999999999999999999999999999999999999999999999
Q ss_pred HHHhhc
Q 034713 80 EQSWTA 85 (86)
Q Consensus 80 ~~~~~~ 85 (86)
+||++.
T Consensus 145 kK~~e~ 150 (153)
T KOG0422|consen 145 KKYSEK 150 (153)
T ss_pred HHhcCc
Confidence 999875
No 11
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=99.95 E-value=4.3e-28 Score=153.37 Aligned_cols=83 Identities=39% Similarity=0.706 Sum_probs=80.7
Q ss_pred CCeEEEecCCccccccCCCceeecccc-CCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHH
Q 034713 1 MTDFKFQFCLVLAKVYADGSICLDILQ-NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIV 79 (86)
Q Consensus 1 ~P~v~F~t~i~HPNV~~~G~vcl~~l~-~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~ 79 (86)
+|+|+|.|++|||||+++|.||+++|. ++|+|++++.+||.+|+++|.+|+.++|+|.+|+.+|.++++.|.++|++++
T Consensus 62 pP~v~f~~~i~Hp~i~~~G~icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~eaa~~~~~~~~~f~~~~~~~~ 141 (145)
T smart00212 62 PPKVKFITKIYHPNVDSSGEICLDILKQEKWSPATTLETVLLSIQSLLSEPNPDSPLNADAATLYKKNREEFKKKAREWT 141 (145)
T ss_pred CCEEEEeCCceEeeECCCCCEehhhcCCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHH
Confidence 599999999999999999999999998 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHh
Q 034713 80 EQSW 83 (86)
Q Consensus 80 ~~~~ 83 (86)
+|++
T Consensus 142 ~k~~ 145 (145)
T smart00212 142 KKYA 145 (145)
T ss_pred HHhC
Confidence 9874
No 12
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=99.95 E-value=2.5e-28 Score=153.59 Aligned_cols=79 Identities=39% Similarity=0.770 Sum_probs=71.2
Q ss_pred CCeEEEecCCccccccCCCceeeccccC-CCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHH
Q 034713 1 MTDFKFQFCLVLAKVYADGSICLDILQN-QWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIV 79 (86)
Q Consensus 1 ~P~v~F~t~i~HPNV~~~G~vcl~~l~~-~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~ 79 (86)
+|+|+|.|+||||||+.+|.||+++|.. .|+|++++.+||.+|+++|.+|+.++|+|.+|+++|++|+++|.++||+|.
T Consensus 61 pP~v~f~t~i~HPni~~~G~icl~~l~~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~ 140 (140)
T PF00179_consen 61 PPKVRFLTPIFHPNIDENGRICLDILNPESWSPSYTIESILLSIQSLLSEPNPEDPLNEEAAELYKNDREEFEKKAREWA 140 (140)
T ss_dssp --EEEESSS-SBTTB-TTSBBGHGGGTTTTC-TTSHHHHHHHHHHHHHHSTCTTSTSSHHHHHHHHHCHHHHHHHHHHH-
T ss_pred ccccccccccccccccccccchhhhhhcccCCcccccccHHHHHHHHHhCCCCCCcchHHHHHHHHHCHHHHHHHHHHcC
Confidence 5999999999999999999999999985 599999999999999999999999999999999999999999999999984
No 13
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=4.4e-29 Score=160.06 Aligned_cols=85 Identities=32% Similarity=0.665 Sum_probs=81.5
Q ss_pred CCeEEEecCCccccccC-CCceeeccccCCCCCcccHHHHHHH-HHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHH
Q 034713 1 MTDFKFQFCLVLAKVYA-DGSICLDILQNQWSPIYDVAAILTS-IQSLLCDPNPNSPANSEAARMFSENKREYNRRVREI 78 (86)
Q Consensus 1 ~P~v~F~t~i~HPNV~~-~G~vcl~~l~~~W~p~~~l~~vl~~-i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~ 78 (86)
+|+|.|.|+||||||+. +|.||||.++..|+|.+.+..|+.. |-+||..|++.+|+|.|||.+|++++++|.+++|++
T Consensus 63 SPSIGFvnKIfHPNIDe~SGsVCLDViNQtWSp~yDL~NIfetfLPQLL~YPNp~DPLN~eAAal~l~~~~~Y~~~v~eY 142 (189)
T KOG0416|consen 63 SPSIGFVNKIFHPNIDEASGSVCLDVINQTWSPLYDLVNIFETFLPQLLRYPNPSDPLNGEAAALYLRDPEEYEEKVKEY 142 (189)
T ss_pred CCcccceeeccCCCchhccCccHHHHHhhhhhHHHHHHHHHHHHhHHHhcCCCCCCCcccHHHHHHhcCHHHHHHHHHHH
Confidence 59999999999999997 9999999999999999999999985 689999999999999999999999999999999999
Q ss_pred HHHHhhc
Q 034713 79 VEQSWTA 85 (86)
Q Consensus 79 ~~~~~~~ 85 (86)
++|||+.
T Consensus 143 ~~kYA~~ 149 (189)
T KOG0416|consen 143 IKKYATP 149 (189)
T ss_pred HHHhcCh
Confidence 9999974
No 14
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=99.94 E-value=2.8e-27 Score=149.05 Aligned_cols=79 Identities=39% Similarity=0.773 Sum_probs=76.5
Q ss_pred CCeEEEecCCccccccCCCceeeccccCC-CCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHH
Q 034713 1 MTDFKFQFCLVLAKVYADGSICLDILQNQ-WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIV 79 (86)
Q Consensus 1 ~P~v~F~t~i~HPNV~~~G~vcl~~l~~~-W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~ 79 (86)
+|+|+|.|++|||||+.+|.||+++|..+ |+|++++.+||.+|+++|.+|+.++|+|.+|+.+|++|+++|.++|++|+
T Consensus 62 pP~v~f~~~i~HpnV~~~G~icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~ 141 (141)
T cd00195 62 PPKVRFVTKIYHPNVDENGKICLSILKTHGWSPAYTLRTVLLSLQSLLNEPNPSDPLNAEAAKLYKENREEFKKKAREWT 141 (141)
T ss_pred CCeEEEeCCcccCCCCCCCCCchhhcCCCCcCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHhC
Confidence 59999999999999999999999999877 99999999999999999999999999999999999999999999999874
No 15
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2e-27 Score=149.19 Aligned_cols=80 Identities=41% Similarity=0.710 Sum_probs=77.0
Q ss_pred CCeEEEecCCccccccCCCceeeccccCCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHH
Q 034713 1 MTDFKFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVE 80 (86)
Q Consensus 1 ~P~v~F~t~i~HPNV~~~G~vcl~~l~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~ 80 (86)
+|+|+|+|+.|||||+-.|.||||||++.|+..++++.||.+||+||.+|+.++|+|..||.++. |+++|++.+.+..+
T Consensus 92 pP~vkFltpc~HPNVD~~GnIcLDILkdKWSa~YdVrTILLSiQSLLGEPNn~SPLNaqAAelW~-d~~eykk~l~~~Y~ 170 (175)
T KOG0421|consen 92 PPTVKFLTPCFHPNVDLSGNICLDILKDKWSAVYDVRTILLSIQSLLGEPNNSSPLNAQAAELWS-DQEEYKKYLEALYK 170 (175)
T ss_pred CCeeEeeccccCCCccccccchHHHHHHHHHHHHhHHHHHHHHHHHhCCCCCCCcchhHHHHHhc-CHHHHHHHHHHHhh
Confidence 69999999999999999999999999999999999999999999999999999999999999998 99999999988766
Q ss_pred H
Q 034713 81 Q 81 (86)
Q Consensus 81 ~ 81 (86)
+
T Consensus 171 ~ 171 (175)
T KOG0421|consen 171 E 171 (175)
T ss_pred c
Confidence 5
No 16
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=2.8e-25 Score=137.94 Aligned_cols=83 Identities=31% Similarity=0.705 Sum_probs=79.2
Q ss_pred CCeEEEecCCccccccCCCceeecccc-------------CCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhC
Q 034713 1 MTDFKFQFCLVLAKVYADGSICLDILQ-------------NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSEN 67 (86)
Q Consensus 1 ~P~v~F~t~i~HPNV~~~G~vcl~~l~-------------~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~ 67 (86)
.|+++|...||||||+++|+||.+||. +.|+|.++++.||.++.+||.+|+.++++|.+|+.++++|
T Consensus 68 PPkm~Ftc~~fHPNiy~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SMLaEPNdESgANvdA~~mWRe~ 147 (165)
T KOG0426|consen 68 PPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDACKMWRED 147 (165)
T ss_pred CCceeeecccccCcccCCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHHcCCCcccCcccHHHHHHHHh
Confidence 489999999999999999999999993 6899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 034713 68 KREYNRRVREIVEQSW 83 (86)
Q Consensus 68 ~~~f~~~~~~~~~~~~ 83 (86)
|++|.+.|+..+.|..
T Consensus 148 R~ef~~i~~~lvrKtL 163 (165)
T KOG0426|consen 148 REEFEKIAKRLVRKTL 163 (165)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999998863
No 17
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.5e-24 Score=139.89 Aligned_cols=84 Identities=35% Similarity=0.559 Sum_probs=81.4
Q ss_pred CCeEEEecCCccccccCCCceeeccccCCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHH
Q 034713 1 MTDFKFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVE 80 (86)
Q Consensus 1 ~P~v~F~t~i~HPNV~~~G~vcl~~l~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~ 80 (86)
.|+-.|+|+||||||-.+|+||.+.|..+|+|.+.|+.||..|..||..|++++.+|.+|.++..++.++|.++||-+|+
T Consensus 73 PPKgYFlTKIFHPNVaaNGEICVNtLKkDW~p~LGirHvLltikCLLI~PnPESALNEeAGkmLLEnYdeYa~rARl~Te 152 (223)
T KOG0423|consen 73 PPKGYFLTKIFHPNVAANGEICVNTLKKDWNPSLGIRHVLLTIKCLLIEPNPESALNEEAGKMLLENYDEYARRARLYTE 152 (223)
T ss_pred CCcceeeeeeccCCcccCceehhhhhhcccCcccchhhHhhhhheeeecCChHHHHhHHHHHHHHHhHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhh
Q 034713 81 QSWT 84 (86)
Q Consensus 81 ~~~~ 84 (86)
-++.
T Consensus 153 IHa~ 156 (223)
T KOG0423|consen 153 IHAK 156 (223)
T ss_pred hhcC
Confidence 8775
No 18
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=6.4e-16 Score=103.16 Aligned_cols=84 Identities=20% Similarity=0.370 Sum_probs=76.0
Q ss_pred CCeEEEecCCccccccC-CCceeeccccCCCCCc-ccHHHHHHHHHHhhcCCCCCCC--ccHHHHHHHHhCHHHHHHHHH
Q 034713 1 MTDFKFQFCLVLAKVYA-DGSICLDILQNQWSPI-YDVAAILTSIQSLLCDPNPNSP--ANSEAARMFSENKREYNRRVR 76 (86)
Q Consensus 1 ~P~v~F~t~i~HPNV~~-~G~vcl~~l~~~W~p~-~~l~~vl~~i~~ll~~p~~~~p--~n~~aa~~~~~~~~~f~~~~~ 76 (86)
.|+|.|.+.+|||.|++ +|.+|++.....|+.. .+|++||..||.+|++|+...+ .|+||+.+|++++++|.++|+
T Consensus 83 lPrvvF~q~vfHP~icp~skeLdl~raf~eWRk~ehhiwqvL~ylqriF~dpd~si~kl~N~eAa~l~~k~r~ef~~rvq 162 (258)
T KOG0429|consen 83 LPRVVFEQSVFHPLICPKSKELDLNRAFPEWRKEEHHIWQVLVYLQRIFYDPDVSIDKLINPEAAVLYKKHRDEFRERVQ 162 (258)
T ss_pred CCeEEeeccccccccCCCccceeHhhhhhhhhccccHHHHHHHHHHHHhcCcccchhhhcChHHHHHHHHhHHHHHHHHH
Confidence 49999999999999998 8999999887779655 6899999999999999987755 699999999999999999999
Q ss_pred HHHHHHhh
Q 034713 77 EIVEQSWT 84 (86)
Q Consensus 77 ~~~~~~~~ 84 (86)
++++.+.+
T Consensus 163 e~vk~sr~ 170 (258)
T KOG0429|consen 163 ECVKASRS 170 (258)
T ss_pred HHHHHHHH
Confidence 99988654
No 19
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=2.2e-15 Score=93.72 Aligned_cols=59 Identities=31% Similarity=0.600 Sum_probs=51.7
Q ss_pred CCeEEEecCC-ccccccCCCceeeccccCCCCCcccHHHHHHHHHHhhcCC-CCCCCccHH
Q 034713 1 MTDFKFQFCL-VLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDP-NPNSPANSE 59 (86)
Q Consensus 1 ~P~v~F~t~i-~HPNV~~~G~vcl~~l~~~W~p~~~l~~vl~~i~~ll~~p-~~~~p~n~~ 59 (86)
+|.|.|..++ -||+|+.+|.|||++|.++|+|++++.+|+++|.+||++- +-..|.+.+
T Consensus 77 sPqVmF~~~~P~HPHiYSNGHICL~iL~d~WsPAmsv~SvClSIlSMLSSs~eKqrP~Dn~ 137 (161)
T KOG0427|consen 77 SPQVMFVGPAPLHPHIYSNGHICLDILYDSWSPAMSVQSVCLSILSMLSSSKEKQRPTDND 137 (161)
T ss_pred CCeEEEecCCCCCCceecCCeEEEEeecccCCcchhhHHHHHHHHHHHccCccccCCCccc
Confidence 6999999887 8999999999999999999999999999999999999954 444565443
No 20
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=5.6e-06 Score=65.60 Aligned_cols=48 Identities=27% Similarity=0.605 Sum_probs=40.5
Q ss_pred CeEEEecC--CccccccCCCceeecccc-------CCCCCcccHHHHHHHHHHhhcC
Q 034713 2 TDFKFQFC--LVLAKVYADGSICLDILQ-------NQWSPIYDVAAILTSIQSLLCD 49 (86)
Q Consensus 2 P~v~F~t~--i~HPNV~~~G~vcl~~l~-------~~W~p~~~l~~vl~~i~~ll~~ 49 (86)
|.+...+. -++||.|..|+|||++|+ +-|+|+-++.+||.+||.|..+
T Consensus 915 p~~~~~s~~~r~npnly~~g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~s~q~l~l~ 971 (1101)
T KOG0895|consen 915 PLVHYHSGGVRLNPNLYEDGKVCLSLLNTWHGRGNEVWNPSSSILQVLVSIQGLVLN 971 (1101)
T ss_pred CceEeecCceeeCcccccccceehhhhccccCCCccccCcchhHHHHHHHhhhhhcc
Confidence 55555544 378999999999999996 5699999999999999999874
No 21
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.00043 Score=46.77 Aligned_cols=45 Identities=22% Similarity=0.477 Sum_probs=34.0
Q ss_pred CeEEEecCC--ccccccCCCceeecccc---CCCCCcccHHHHHHHHHHhhcCC
Q 034713 2 TDFKFQFCL--VLAKVYADGSICLDILQ---NQWSPIYDVAAILTSIQSLLCDP 50 (86)
Q Consensus 2 P~v~F~t~i--~HPNV~~~G~vcl~~l~---~~W~p~~~l~~vl~~i~~ll~~p 50 (86)
|.|+..|+- |-+ +-++||++-. +.|+|.+++..||.+|.++|.+-
T Consensus 69 PaI~MiTPNGRFkt----ntRLCLSiSDfHPdsWNP~WsVStILtGLlSFM~e~ 118 (244)
T KOG0894|consen 69 PAITMITPNGRFKT----NTRLCLSISDFHPDSWNPGWSVSTILTGLLSFMTED 118 (244)
T ss_pred CeeEEECCCCceec----CceEEEeccccCcCcCCCcccHHHHHHHHHHHHhcC
Confidence 555555541 222 4579999875 77999999999999999999853
No 22
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.00015 Score=57.87 Aligned_cols=49 Identities=29% Similarity=0.611 Sum_probs=43.3
Q ss_pred CCeEEEecC---CccccccCCCceeecccc-------CCCCCc-ccHHHHHHHHHHhhcC
Q 034713 1 MTDFKFQFC---LVLAKVYADGSICLDILQ-------NQWSPI-YDVAAILTSIQSLLCD 49 (86)
Q Consensus 1 ~P~v~F~t~---i~HPNV~~~G~vcl~~l~-------~~W~p~-~~l~~vl~~i~~ll~~ 49 (86)
.|.+.++|. -+.||-|.+|+||+++|. +.|+|. .+|.++|.+||.++.+
T Consensus 345 pp~v~~lt~~~~R~nPNlYn~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ~Li~~ 404 (1101)
T KOG0895|consen 345 PPHVKYLTGGGVRLNPNLYNDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLESIQGLILN 404 (1101)
T ss_pred CceeEEeeccceeecCCcccCceEEeeeeeecccccccCCCccccchhhhhhhhhhhhcc
Confidence 478888877 489999999999999984 679999 7999999999999884
No 23
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=96.92 E-value=0.0035 Score=39.09 Aligned_cols=39 Identities=33% Similarity=0.618 Sum_probs=34.9
Q ss_pred ccccccCCCceee---ccccCCCCCcccHHHHHHHHHHhhcC
Q 034713 11 VLAKVYADGSICL---DILQNQWSPIYDVAAILTSIQSLLCD 49 (86)
Q Consensus 11 ~HPNV~~~G~vcl---~~l~~~W~p~~~l~~vl~~i~~ll~~ 49 (86)
+=|+|+.+|.+|+ ...-+.|.|.-++.++|..+..+|.+
T Consensus 65 ~~pHv~~~G~LCl~~~~~~~D~~~P~~~~~~~l~~a~~lL~~ 106 (133)
T PF14461_consen 65 LLPHVESDGKLCLLDEELVLDPWDPEGIIADCLERAIRLLED 106 (133)
T ss_pred ccCeEcCCCeEEEecCCcccCccCHHHHHHHHHHHHHHHHHH
Confidence 6899999999999 66668899999999999999999883
No 24
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.0035 Score=38.49 Aligned_cols=68 Identities=22% Similarity=0.486 Sum_probs=48.6
Q ss_pred CccccccC-----CCceeecccc-CCCCCcccHHHHHHHHHHhhcCC--CCCCCccHHHHHHHHhC--HHHHHHHHHHH
Q 034713 10 LVLAKVYA-----DGSICLDILQ-NQWSPIYDVAAILTSIQSLLCDP--NPNSPANSEAARMFSEN--KREYNRRVREI 78 (86)
Q Consensus 10 i~HPNV~~-----~G~vcl~~l~-~~W~p~~~l~~vl~~i~~ll~~p--~~~~p~n~~aa~~~~~~--~~~f~~~~~~~ 78 (86)
+-+|.++. +|.||+.+|. +.|+.+++++.++++|...+..- -...|++.+-. +|... .+.|++.++..
T Consensus 32 vv~p~~~~Gyvl~ggAIcmellt~qgwssay~Ve~vi~qiaatlVkG~~ri~~~a~k~sk-~~s~~qa~~sfksLv~~h 109 (122)
T KOG0897|consen 32 VVKPLEDEGYVLEGGAICMELLTKQGWSSAYEVERVIMQIAATLVKGGARIEFPAEKSSK-LYSHSQAQQSFKSLVQIH 109 (122)
T ss_pred eeeecccCCEEecchhhHHHHHccccccchhhHHHHHHHHHHHhhccceeEecCcchhhh-HhhHHHHHHHHHHHHHHH
Confidence 45777763 6999999997 67999999999999998888854 45566655544 55432 34555555443
No 25
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=96.24 E-value=0.0049 Score=38.06 Aligned_cols=36 Identities=19% Similarity=0.526 Sum_probs=26.1
Q ss_pred cccccCCCceeeccccCCCCC-cccHHHHHHHHHHhhc
Q 034713 12 LAKVYADGSICLDILQNQWSP-IYDVAAILTSIQSLLC 48 (86)
Q Consensus 12 HPNV~~~G~vcl~~l~~~W~p-~~~l~~vl~~i~~ll~ 48 (86)
+.+|+.+|.|.+..| ++|.+ ..+|.+++..++..|.
T Consensus 80 ~~~Vd~~G~v~~pyL-~~W~~~~s~L~~lv~~l~~~F~ 116 (121)
T PF05743_consen 80 SHHVDSNGRVYLPYL-QNWNPPSSNLVDLVQELQAVFS 116 (121)
T ss_dssp CCCB-TTSBB-SHHH-HT--TTTS-HHHHHHHHHHCCC
T ss_pred CCeECCCCCEeCchh-ccCCCCCCCHHHHHHHHHHHHh
Confidence 449999999999998 58977 7789999988888776
No 26
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=96.10 E-value=0.0076 Score=37.96 Aligned_cols=50 Identities=12% Similarity=0.291 Sum_probs=40.6
Q ss_pred CCeEEEecCCccccccC-CCceeecccc--CCCCCcccHHHHHHHHHHhhcCC
Q 034713 1 MTDFKFQFCLVLAKVYA-DGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDP 50 (86)
Q Consensus 1 ~P~v~F~t~i~HPNV~~-~G~vcl~~l~--~~W~p~~~l~~vl~~i~~ll~~p 50 (86)
.|.|+|.|+|.-+-|+. +|.|.-.-+. .+|+..++++.+|..++.++...
T Consensus 72 PP~vrf~tkinm~gvn~~~g~Vd~~~i~~L~~W~~~y~~~~vl~~lr~~m~~~ 124 (138)
T KOG0896|consen 72 PPTVRFGTKINMNGVNSSNGVVDPRDITVLARWQRSYSIKMVLGQLRKEMMSK 124 (138)
T ss_pred CceeEEEEEeeecccccCCCccCccccchhhcccccchhhHHHHhhhHHHHHH
Confidence 48999999999999976 7777664332 78999999999999998666543
No 27
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.65 E-value=0.046 Score=39.34 Aligned_cols=38 Identities=18% Similarity=0.492 Sum_probs=32.1
Q ss_pred cccccCCCceeeccccCCCCC-cccHHHHHHHHHHhhcCC
Q 034713 12 LAKVYADGSICLDILQNQWSP-IYDVAAILTSIQSLLCDP 50 (86)
Q Consensus 12 HPNV~~~G~vcl~~l~~~W~p-~~~l~~vl~~i~~ll~~p 50 (86)
|-+|+.+|.|.|..| .+|.+ +.+|..++..+...|.++
T Consensus 100 ~~hVd~nG~V~LPYL-h~W~~pssdLv~Liq~l~a~f~~~ 138 (365)
T KOG2391|consen 100 HEHVDPNGKVYLPYL-HNWDPPSSDLVGLIQELIAAFSED 138 (365)
T ss_pred hhccCCCCeEechhh-ccCCCccchHHHHHHHHHHHhcCC
Confidence 899999999999999 47855 567889988888888754
No 28
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.61 E-value=0.029 Score=38.85 Aligned_cols=31 Identities=23% Similarity=0.612 Sum_probs=26.6
Q ss_pred CCceeecccc---CCCCCcccHHHHHHHHHHhhc
Q 034713 18 DGSICLDILQ---NQWSPIYDVAAILTSIQSLLC 48 (86)
Q Consensus 18 ~G~vcl~~l~---~~W~p~~~l~~vl~~i~~ll~ 48 (86)
+-.|||+|-+ +.|.|+++|+..|.+|..+|-
T Consensus 88 nkKiCLSISgyHPEtWqPSWSiRTALlAlIgFmP 121 (314)
T KOG0428|consen 88 NKKICLSISGYHPETWQPSWSIRTALLALIGFMP 121 (314)
T ss_pred CceEEEEecCCCccccCcchhHHHHHHHHHcccc
Confidence 3469999986 789999999999999988775
No 29
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=86.09 E-value=1.5 Score=28.56 Aligned_cols=41 Identities=22% Similarity=0.363 Sum_probs=25.4
Q ss_pred ecCCcc---ccccCCCceeeccccCCCCCcccHHHHHHHHH-HhhcCC
Q 034713 7 QFCLVL---AKVYADGSICLDILQNQWSPIYDVAAILTSIQ-SLLCDP 50 (86)
Q Consensus 7 ~t~i~H---PNV~~~G~vcl~~l~~~W~p~~~l~~vl~~i~-~ll~~p 50 (86)
.|++|| +||+.+|.||..-.. .|......-+.... .++.++
T Consensus 89 ~T~Ly~aPf~NV~~~g~vC~G~~~---~P~~~~~~~i~~we~~Ff~S~ 133 (175)
T PF14460_consen 89 DTPLYHAPFFNVYSNGSVCWGNNS---LPKISTLASIEAWEDAFFNSP 133 (175)
T ss_pred CCeeEeCCccccCCCCcEeeCCCc---CCCccCHHHHHHHHHHHhCCC
Confidence 466666 699999999997643 34444344455554 444454
No 30
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=76.63 E-value=2.6 Score=27.30 Aligned_cols=38 Identities=24% Similarity=0.406 Sum_probs=29.7
Q ss_pred cccccCC-----Cceeecccc-CCCCCcccHHHHHHHHHHhhcC
Q 034713 12 LAKVYAD-----GSICLDILQ-NQWSPIYDVAAILTSIQSLLCD 49 (86)
Q Consensus 12 HPNV~~~-----G~vcl~~l~-~~W~p~~~l~~vl~~i~~ll~~ 49 (86)
+|++... ..+|+..-. ..|.+..++..+|..|...|..
T Consensus 83 lpH~~~~~~~~p~~lCl~~~~~~e~~~~~g~~~~l~rl~~Wl~~ 126 (162)
T PF14457_consen 83 LPHQNPGPEGEPVSLCLYEGPWSEWRPSWGPEGFLDRLFDWLRD 126 (162)
T ss_pred CCccCCCCCCCCccceEecCCHHHhhhccCHHHHHHHHHHHHHH
Confidence 5667654 779996543 5699999999999999888764
No 31
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=68.87 E-value=11 Score=25.92 Aligned_cols=38 Identities=21% Similarity=0.317 Sum_probs=24.7
Q ss_pred cCCcc---ccccCCCceeeccccCCCCCcc-cHHHHHHHHHHhhcC
Q 034713 8 FCLVL---AKVYADGSICLDILQNQWSPIY-DVAAILTSIQSLLCD 49 (86)
Q Consensus 8 t~i~H---PNV~~~G~vcl~~l~~~W~p~~-~l~~vl~~i~~ll~~ 49 (86)
|++|| +||+++|+||+.-.. .|.. ++.+ +......|.+
T Consensus 131 T~L~~aPffNV~~~G~VC~G~~~---~P~~~~~~~-i~~we~~FF~ 172 (228)
T TIGR03737 131 TKLYQAPLFNVWSNGEICAGNAR---LPDRPTVAN-ISAWEDAFFS 172 (228)
T ss_pred CeeccCCcCccCCCCeEeeCCCc---CCCCcCHHH-HHHHHHHHhC
Confidence 55665 599999999997653 4443 5555 6655555443
No 32
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=65.45 E-value=3.8 Score=27.47 Aligned_cols=28 Identities=21% Similarity=0.468 Sum_probs=22.8
Q ss_pred CCceeeccccCCCCCcccHHHHHHHHHH
Q 034713 18 DGSICLDILQNQWSPIYDVAAILTSIQS 45 (86)
Q Consensus 18 ~G~vcl~~l~~~W~p~~~l~~vl~~i~~ 45 (86)
.|..|+++|.+.|+|.+|..+-+.-++.
T Consensus 135 ~~~f~~sIlDr~Y~pdmt~eea~~lmkK 162 (200)
T KOG0177|consen 135 GSYFCLSILDRYYKPDMTIEEALDLMKK 162 (200)
T ss_pred hhhhhHHHHHhhhCCCCCHHHHHHHHHH
Confidence 4679999999999999998887765543
No 33
>PF12018 DUF3508: Domain of unknown function (DUF3508); InterPro: IPR021897 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 280 amino acids in length. This domain has two conserved sequence motifs: GFC and GLL. This family is also known as UPF0704.
Probab=60.81 E-value=16 Score=25.49 Aligned_cols=30 Identities=27% Similarity=0.262 Sum_probs=26.5
Q ss_pred CccHHHHHHHHhCHHHHHHHHHHHHHHHhh
Q 034713 55 PANSEAARMFSENKREYNRRVREIVEQSWT 84 (86)
Q Consensus 55 p~n~~aa~~~~~~~~~f~~~~~~~~~~~~~ 84 (86)
-.+.+++..|.++++.|...+.+.+++..+
T Consensus 238 F~s~~aa~~F~~~P~~yi~~v~~~ar~~pe 267 (281)
T PF12018_consen 238 FSSREAAYRFAEDPERYIQAVLEKARKNPE 267 (281)
T ss_pred eCCHHHHHHHHHCHHHHHHHHHHHHhhCHH
Confidence 377899999999999999999999988654
No 34
>PF02563 Poly_export: Polysaccharide biosynthesis/export protein; InterPro: IPR003715 The extracellular polysaccharide colanic acid (CA) is produced by species of the family Enterobacteriaceae. In Escherichia coli (strain K12) the CA cluster comprises 19 genes. The wzx gene encodes a protein with multiple transmembrane segments that may function in export of the CA repeat unit from the cytoplasm into the periplasm in a process analogous to O-unit export. The CA gene clusters may be involved in the export of polysaccharide from the cell [].; GO: 0015159 polysaccharide transmembrane transporter activity, 0015774 polysaccharide transport, 0016020 membrane; PDB: 2W8I_E 2W8H_E 2J58_D.
Probab=59.11 E-value=17 Score=20.38 Aligned_cols=35 Identities=20% Similarity=0.178 Sum_probs=24.3
Q ss_pred ccCCCceeeccccCCCCCcccHHHHHHHHHHhhcC
Q 034713 15 VYADGSICLDILQNQWSPIYDVAAILTSIQSLLCD 49 (86)
Q Consensus 15 V~~~G~vcl~~l~~~W~p~~~l~~vl~~i~~ll~~ 49 (86)
|+++|.|-++.+..---..+|+.++=..|...+..
T Consensus 35 V~~dG~I~lP~iG~v~v~G~T~~e~~~~I~~~l~~ 69 (82)
T PF02563_consen 35 VDPDGTISLPLIGPVKVAGLTLEEAEEEIKQRLQK 69 (82)
T ss_dssp --TTSEEEETTTEEEE-TT--HHHHHHHHHHHHTT
T ss_pred ECCCCcEeecccceEEECCCCHHHHHHHHHHHHHH
Confidence 67899999999976566778888888888777765
No 35
>cd01145 TroA_c Periplasmic binding protein TroA_c. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=57.01 E-value=30 Score=22.61 Aligned_cols=47 Identities=15% Similarity=0.382 Sum_probs=35.2
Q ss_pred CCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHH
Q 034713 30 WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQS 82 (86)
Q Consensus 30 W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~ 82 (86)
|-....+..+...|...|..-++++ +..|.+|.+.|.++..+.-+++
T Consensus 111 Wldp~~~~~~a~~I~~~L~~~dP~~------~~~y~~N~~~~~~~l~~l~~~~ 157 (203)
T cd01145 111 WLDPNNAPALAKALADALIELDPSE------QEEYKENLRVFLAKLNKLLREW 157 (203)
T ss_pred ecCHHHHHHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHHHHHHHHHH
Confidence 8777788888899988888554433 5678888888888877665544
No 36
>PF00779 BTK: BTK motif; InterPro: IPR001562 The Btk-type zinc finger or Btk motif (BM) is a conserved zinc-binding motif containing conserved cysteines and a histidine that is present in certain eukaryotic signalling proteins. The motif is named after Bruton's tyrosine kinase (Btk), an enzyme which is essential for B cell maturation in humans and mice [, ]. Btk is a member of the Tec family of protein tyrosine kinases (PTK). These kinases contain a conserved Tec homology (TH) domain between the N-terminal pleckstrin homology (PH) domain (IPR001849 from INTERPRO) and the Src homology 3 (SH3) domain (IPR001452 from INTERPRO). The N-terminal of the TH domain is highly conserved and known as the Btf motif, while the C-terminal region of the TH domain contains a proline-rich region (PRR). The Btk motif contains a conserved His and three Cys residues that form a zinc finger (although these differ from known zinc finger topologies), while PRRs are commonly involved in protein-protein interactions, including interactions with G proteins [, ]. The TH domain may be of functional importance in various signalling pathways in different species []. A complete TH domain, containing both the Btk and PRR regions, has not been found outside the Tec family; however, the Btk motif on its own does occur in other proteins, usually C-terminal to a PH domain (note that although a Btk motif always occurs C-terminal to a PH domain, not all PH domains are followed by a Btk motif). The crystal structures of Btk show that the Btk-type zinc finger has a globular core, formed by a long loop which is held together by a zinc ion, and that the Btk motif is packed against the PH domain []. The zinc-binding residues are a histidine and three cysteines, which are fully conserved in the Btk motif []. Proteins known to contain a Btk-type zinc finger include: Mammalian Bruton's tyrosine kinase (Btk), a protein tyrosine kinase involved in modulation of diverse cellular processes. Mutations affecting Btk are the cause of X-linked agammaglobulinemia (XLA) in humans and X-linked immunodeficiency in mice. Mammalian Tec, Bmx, and Itk proteins, which are tyrosine protein kinases of the Tec subfamily. Drosophila tyrosine-protein kinase Btk29A, which is required for the development of proper ring canals and of male genitalia and required for adult survival. Mammalian Ras GTPase-activating proteins (RasGAP), which regulate the activation of inactive GDP-bound Ras by converting GDP to GTP. ; GO: 0035556 intracellular signal transduction; PDB: 2E6I_A 2YS2_A 2Z0P_A 1B55_A 1BTK_B 1BWN_A.
Probab=56.64 E-value=3.3 Score=19.74 Aligned_cols=16 Identities=13% Similarity=0.333 Sum_probs=9.3
Q ss_pred CccccccCCCc-eeecc
Q 034713 10 LVLAKVYADGS-ICLDI 25 (86)
Q Consensus 10 i~HPNV~~~G~-vcl~~ 25 (86)
-|||.++.+|+ .|-..
T Consensus 2 ~yHPg~~~~g~W~CC~q 18 (32)
T PF00779_consen 2 KYHPGAWRGGKWLCCKQ 18 (32)
T ss_dssp EE-SS-EETTCESSSS-
T ss_pred CcCCCcccCCcCcCCCC
Confidence 38999998776 55543
No 37
>KOG3203 consensus Mitochondrial/chloroplast ribosomal protein L13 [Translation, ribosomal structure and biogenesis]
Probab=56.46 E-value=7 Score=25.40 Aligned_cols=15 Identities=7% Similarity=-0.119 Sum_probs=10.7
Q ss_pred cCCccccccCCCceee
Q 034713 8 FCLVLAKVYADGSICL 23 (86)
Q Consensus 8 t~i~HPNV~~~G~vcl 23 (86)
.++|||+.| .|.+|.
T Consensus 49 KPiYhP~~D-cGD~VV 63 (165)
T KOG3203|consen 49 KPIYHPSTD-CGDHVV 63 (165)
T ss_pred CCccCCccC-CCCEEE
Confidence 479999987 555544
No 38
>PF11333 DUF3135: Protein of unknown function (DUF3135); InterPro: IPR021482 This family of proteins with unkown function appears to be restricted to Proteobacteria.
Probab=54.05 E-value=41 Score=19.39 Aligned_cols=28 Identities=11% Similarity=0.236 Sum_probs=22.3
Q ss_pred cHHHHHHHHhCHHHHHHHHHHHHHHHhh
Q 034713 57 NSEAARMFSENKREYNRRVREIVEQSWT 84 (86)
Q Consensus 57 n~~aa~~~~~~~~~f~~~~~~~~~~~~~ 84 (86)
.-+...++++|+++|++..++..+..++
T Consensus 6 FD~L~~LA~~dPe~fe~lr~~~~ee~I~ 33 (83)
T PF11333_consen 6 FDELKELAQNDPEAFEQLRQELIEEMIE 33 (83)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 3456778899999999999888876543
No 39
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=50.18 E-value=49 Score=22.56 Aligned_cols=47 Identities=9% Similarity=0.392 Sum_probs=34.9
Q ss_pred CCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHH
Q 034713 30 WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQS 82 (86)
Q Consensus 30 W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~ 82 (86)
|-.......+...|...|..-++++ +..|.+|.+.|.++.++..+++
T Consensus 98 Wldp~n~~~~a~~I~~~L~~~dP~~------~~~y~~N~~~~~~~l~~l~~~~ 144 (264)
T cd01020 98 WYDPETMSKVANALADALVKADPDN------KKYYQANAKKFVASLKPLAAKI 144 (264)
T ss_pred ecCHhHHHHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHHHHHHHHHH
Confidence 8777778888899999998555443 4578888888888877665544
No 40
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=49.95 E-value=47 Score=22.64 Aligned_cols=47 Identities=13% Similarity=0.253 Sum_probs=34.6
Q ss_pred CCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHH
Q 034713 30 WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQS 82 (86)
Q Consensus 30 W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~ 82 (86)
|-....+..+...|..-|..-++++ +..|.+|.+.|.++.++.-+++
T Consensus 115 Wldp~~~~~~a~~I~~~L~~~dP~~------~~~y~~N~~~~~~~L~~l~~~~ 161 (266)
T cd01018 115 WLSPANAKIMAENIYEALAELDPQN------ATYYQANLDALLAELDALDSEI 161 (266)
T ss_pred CcCHHHHHHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHHHHHHHHHH
Confidence 8777788899999998888555443 5677888888887776655443
No 41
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=48.76 E-value=23 Score=19.07 Aligned_cols=18 Identities=17% Similarity=0.573 Sum_probs=11.3
Q ss_pred CCCCcccHHHHHHHHHHh
Q 034713 29 QWSPIYDVAAILTSIQSL 46 (86)
Q Consensus 29 ~W~p~~~l~~vl~~i~~l 46 (86)
+|.|.++|.+++...-..
T Consensus 37 gW~p~~~L~~~i~~~w~W 54 (62)
T PF13950_consen 37 GWKPKYSLEDMIRDAWNW 54 (62)
T ss_dssp ----SSSHHHHHHHHHHH
T ss_pred CCCcCCCHHHHHHHHHHH
Confidence 699999999999876444
No 42
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=44.94 E-value=54 Score=22.72 Aligned_cols=48 Identities=19% Similarity=0.356 Sum_probs=36.0
Q ss_pred CCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHh
Q 034713 30 WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSW 83 (86)
Q Consensus 30 W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~~ 83 (86)
|-....+..+...|..-|..-+++ -+..|.+|.+.|.++.++.-+++.
T Consensus 124 Wldp~n~~~~a~~I~~~L~~~dP~------~~~~y~~N~~~~~~~L~~l~~~~~ 171 (286)
T cd01019 124 WLSPENAAEVAQAVAEKLSALDPD------NAATYAANLEAFNARLAELDATIK 171 (286)
T ss_pred CCCHHHHHHHHHHHHHHHHHHCch------hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877777888889998888844433 356889999999888887666544
No 43
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.66 E-value=8 Score=29.99 Aligned_cols=61 Identities=10% Similarity=0.269 Sum_probs=35.6
Q ss_pred Ccccccc--CCCceeecccc------CCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHH
Q 034713 10 LVLAKVY--ADGSICLDILQ------NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVE 80 (86)
Q Consensus 10 i~HPNV~--~~G~vcl~~l~------~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~ 80 (86)
-|||-|. .-|.+|++++. +-|...++..+ ...-++|-|....+.|.+-...++-.++++.+
T Consensus 210 kfh~li~~ykIGtLCmn~idhElkRye~w~~El~k~k----------rs~de~p~netLk~e~dr~~kklk~~~~KQeq 278 (791)
T KOG1222|consen 210 KFHPLIVQYKIGTLCMNAIDHELKRYEFWIAELKKTK----------RSTDEKPKNETLKEEIDRLNKKLKTAIRKQEQ 278 (791)
T ss_pred cccchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhhh----------cccccCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3899995 47999999874 34655444333 11224666666655554434445555555443
No 44
>cd01016 TroA Metal binding protein TroA. These proteins have been shown to function as initial receptors in ABC transport of Zn2+ and possibly Fe3+ in many eubacterial species. The TroA proteins belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=43.74 E-value=65 Score=22.16 Aligned_cols=46 Identities=13% Similarity=0.264 Sum_probs=33.9
Q ss_pred CCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHH
Q 034713 30 WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQ 81 (86)
Q Consensus 30 W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~ 81 (86)
|-....+..+...|...|..-++.+ +..|.+|.+.|.++.++.-++
T Consensus 104 Wldp~~~~~~a~~I~~~L~~~dP~~------~~~y~~N~~~~~~~L~~l~~~ 149 (276)
T cd01016 104 WFDVKLWKYAVKAVAEVLSEKLPEH------KDEFQANSEAYVEELDSLDAY 149 (276)
T ss_pred ccCHHHHHHHHHHHHHHHHHHCccc------HHHHHHHHHHHHHHHHHHHHH
Confidence 8777778888899988888555443 557888888888877665543
No 45
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=43.19 E-value=47 Score=25.67 Aligned_cols=28 Identities=25% Similarity=0.373 Sum_probs=23.1
Q ss_pred cHHHHHHHHhCHHHHHHHHHHHHHHHhh
Q 034713 57 NSEAARMFSENKREYNRRVREIVEQSWT 84 (86)
Q Consensus 57 n~~aa~~~~~~~~~f~~~~~~~~~~~~~ 84 (86)
-.|+.++..+|++.|.+.|++...++.+
T Consensus 271 ~eea~~l~~~dp~~~~~~v~~Sl~rhv~ 298 (546)
T PF01175_consen 271 FEEANELRAEDPEEFKERVQESLARHVE 298 (546)
T ss_dssp HHHHHHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHHHH
Confidence 4677778889999999999998877643
No 46
>PRK05414 urocanate hydratase; Provisional
Probab=38.96 E-value=57 Score=25.28 Aligned_cols=29 Identities=17% Similarity=0.263 Sum_probs=23.8
Q ss_pred ccHHHHHHHHhCHHHHHHHHHHHHHHHhh
Q 034713 56 ANSEAARMFSENKREYNRRVREIVEQSWT 84 (86)
Q Consensus 56 ~n~~aa~~~~~~~~~f~~~~~~~~~~~~~ 84 (86)
.-.|+..+..+|++.|.+.|++...++.+
T Consensus 280 t~ee~~~lr~~dp~~~~~~~~~Sm~rhv~ 308 (556)
T PRK05414 280 TLEEAAELRAEDPEEFVKAAKASMARHVE 308 (556)
T ss_pred CHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 34678888899999999999998877643
No 47
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=38.87 E-value=58 Score=25.18 Aligned_cols=28 Identities=11% Similarity=0.251 Sum_probs=23.2
Q ss_pred ccHHHHHHHHhCHHHHHHHHHHHHHHHh
Q 034713 56 ANSEAARMFSENKREYNRRVREIVEQSW 83 (86)
Q Consensus 56 ~n~~aa~~~~~~~~~f~~~~~~~~~~~~ 83 (86)
.-.|+..+..+|++.|.+.|++...++.
T Consensus 271 t~ee~~~lr~~dp~~~~~~~~~Sm~rhv 298 (545)
T TIGR01228 271 TVEDADKLRQEEPEAYVKAAKQSMAKHV 298 (545)
T ss_pred CHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 3467777889999999999999887764
No 48
>smart00107 BTK Bruton's tyrosine kinase Cys-rich motif. Zinc-binding motif containing conserved cysteines and a histidine. Always found C-terminal to PH domains (but not all PH domains are followed by BTK motifs). The crystal structure shows this motif packs against the PH domain. The PH+Btk module pair has been called the Tec homology (TH) region.
Probab=37.31 E-value=14 Score=17.94 Aligned_cols=15 Identities=20% Similarity=0.550 Sum_probs=11.3
Q ss_pred CccccccCCCc-eeec
Q 034713 10 LVLAKVYADGS-ICLD 24 (86)
Q Consensus 10 i~HPNV~~~G~-vcl~ 24 (86)
-|||.++.+|. .|-.
T Consensus 7 ~yHP~~~~~G~W~CC~ 22 (36)
T smart00107 7 KYHPSFWVDGKWLCCQ 22 (36)
T ss_pred ccCCCceeCCeEccCC
Confidence 39999998877 5543
No 49
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=37.04 E-value=83 Score=22.16 Aligned_cols=47 Identities=17% Similarity=0.261 Sum_probs=35.0
Q ss_pred CCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHH
Q 034713 30 WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQS 82 (86)
Q Consensus 30 W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~ 82 (86)
|-....+..+...|..-|..-+++. +..|.+|-+.|.++.++.-+++
T Consensus 148 Wldp~~~~~~a~~I~~~L~~~dP~~------~~~y~~N~~~~~~~L~~l~~~~ 194 (311)
T PRK09545 148 WLSPEIARATAVAIHDKLVELMPQS------KAKLDANLKDFEAQLAQTDKQI 194 (311)
T ss_pred cCCHHHHHHHHHHHHHHHHHhChhh------HHHHHHHHHHHHHHHHHHHHHH
Confidence 8777888888999988888544433 6678888888888777655443
No 50
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=36.04 E-value=1e+02 Score=21.41 Aligned_cols=47 Identities=17% Similarity=0.427 Sum_probs=34.3
Q ss_pred CCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHH
Q 034713 30 WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQS 82 (86)
Q Consensus 30 W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~ 82 (86)
|-....+..+...|..-|..-++++ +..|.+|.+.|.++.++.-+++
T Consensus 120 Wldp~~~~~~a~~Ia~~L~~~dP~~------~~~y~~N~~~~~~~L~~l~~~~ 166 (287)
T cd01137 120 WMSPKNAIIYVKNIAKALSEADPAN------AETYQKNAAAYKAKLKALDEWA 166 (287)
T ss_pred CcCHHHHHHHHHHHHHHHHHHCccc------HHHHHHHHHHHHHHHHHHHHHH
Confidence 8777778888889988887554433 5578888888888777655544
No 51
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=36.00 E-value=1e+02 Score=21.12 Aligned_cols=47 Identities=13% Similarity=0.349 Sum_probs=33.4
Q ss_pred CCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHH
Q 034713 30 WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQS 82 (86)
Q Consensus 30 W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~ 82 (86)
|-....+..+...|...|..-++++ +..|.+|.+.|.++..+.-++.
T Consensus 116 Wldp~~~~~~a~~Ia~~L~~~dP~~------~~~y~~N~~~~~~~L~~l~~~~ 162 (282)
T cd01017 116 WLSPVLAIQQVENIKDALIKLDPDN------KEYYEKNAAAYAKKLEALDQEY 162 (282)
T ss_pred ccCHHHHHHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHHHHHHHHHH
Confidence 8777778888889988888544433 5577788888877776655443
No 52
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=35.01 E-value=62 Score=20.90 Aligned_cols=30 Identities=17% Similarity=0.201 Sum_probs=24.4
Q ss_pred ccCCCceeeccccCCCCCcccHHHHHHHHHHh
Q 034713 15 VYADGSICLDILQNQWSPIYDVAAILTSIQSL 46 (86)
Q Consensus 15 V~~~G~vcl~~l~~~W~p~~~l~~vl~~i~~l 46 (86)
|+++|.|..-. .++++.-...+||..|..+
T Consensus 126 Id~dG~I~~~~--~~v~~~~h~~~vl~~l~~l 155 (157)
T COG1225 126 IDPDGKIRYVW--RKVKVKGHADEVLAALKKL 155 (157)
T ss_pred ECCCCeEEEEe--cCCCCcccHHHHHHHHHHh
Confidence 57788888755 6788889999999888765
No 53
>PF11745 DUF3304: Protein of unknown function (DUF3304); InterPro: IPR021733 This is a family of bacterial proteins of unknown function.
Probab=32.36 E-value=20 Score=21.74 Aligned_cols=20 Identities=30% Similarity=0.572 Sum_probs=15.2
Q ss_pred CCceeeccccCCCCCcccHH
Q 034713 18 DGSICLDILQNQWSPIYDVA 37 (86)
Q Consensus 18 ~G~vcl~~l~~~W~p~~~l~ 37 (86)
.|.+|.-.+...|+|.+++.
T Consensus 50 Gg~~CC~~~p~~W~pg~tv~ 69 (118)
T PF11745_consen 50 GGFTCCVSLPRKWRPGLTVK 69 (118)
T ss_pred CceEEEEEcCCCCCCCCEEE
Confidence 45568877888999998753
No 54
>PF10084 DUF2322: Uncharacterized protein conserved in bacteria (DUF2322); InterPro: IPR016755 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=31.51 E-value=14 Score=22.25 Aligned_cols=6 Identities=0% Similarity=-0.119 Sum_probs=4.8
Q ss_pred cccccc
Q 034713 11 VLAKVY 16 (86)
Q Consensus 11 ~HPNV~ 16 (86)
=|||||
T Consensus 78 kHPNID 83 (100)
T PF10084_consen 78 KHPNID 83 (100)
T ss_pred CCCCHH
Confidence 389987
No 55
>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=31.41 E-value=53 Score=22.49 Aligned_cols=53 Identities=25% Similarity=0.243 Sum_probs=40.9
Q ss_pred CCeEEEecCCccccccC--CCceeeccccCCC--CCcccHHHHHHHHHHhhcCCCCC
Q 034713 1 MTDFKFQFCLVLAKVYA--DGSICLDILQNQW--SPIYDVAAILTSIQSLLCDPNPN 53 (86)
Q Consensus 1 ~P~v~F~t~i~HPNV~~--~G~vcl~~l~~~W--~p~~~l~~vl~~i~~ll~~p~~~ 53 (86)
.|.|-|-.+.|.-.|+- .|-|--.+-+-+| -|...+.+-|..|..+|..|+.+
T Consensus 169 ppdvlfgakly~tsidmwsagcifaelanagrplfpg~dvddqlkrif~~lg~p~ed 225 (292)
T KOG0662|consen 169 PPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTED 225 (292)
T ss_pred CcceeeeeehhccchHhhhcchHHHHHhhcCCCCCCCCcHHHHHHHHHHHhCCCccc
Confidence 37788888899888873 5766555555556 68889999999999999988644
No 56
>COG0803 LraI ABC-type metal ion transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism]
Probab=31.22 E-value=1.1e+02 Score=21.41 Aligned_cols=47 Identities=15% Similarity=0.393 Sum_probs=34.4
Q ss_pred CCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHH
Q 034713 30 WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQS 82 (86)
Q Consensus 30 W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~ 82 (86)
|-........+..|..-|...+|+. +..|..|-+.|.++.++..+.+
T Consensus 136 Wldp~na~~~v~~I~~~L~~~dP~~------~~~y~~N~~~y~~kL~~l~~~~ 182 (303)
T COG0803 136 WLDPKNAKIYAENIADALVELDPEN------KETYEKNAEAYLKKLNKLDEEA 182 (303)
T ss_pred ecCHHHHHHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHHHHHHHHHH
Confidence 7666677788888888888555543 5678888888888887766554
No 57
>smart00580 PUG domain in protein kinases, N-glycanases and other nuclear proteins.
Probab=30.63 E-value=91 Score=16.51 Aligned_cols=28 Identities=18% Similarity=0.387 Sum_probs=19.8
Q ss_pred cHHHHHHHHHHhhcCCCCCCCccHHHHHH
Q 034713 35 DVAAILTSIQSLLCDPNPNSPANSEAARM 63 (86)
Q Consensus 35 ~l~~vl~~i~~ll~~p~~~~p~n~~aa~~ 63 (86)
++.++|..|+.+...|+... .|+.....
T Consensus 2 sv~dLLr~irNi~~hp~e~k-~n~~~~~~ 29 (58)
T smart00580 2 SVRDLLRALRNILHHPREEK-GNPAIKER 29 (58)
T ss_pred cHHHHHHHHHHHhhCcchhh-cCHHHHHH
Confidence 57889999999999997653 34444333
No 58
>KOG2851 consensus Eukaryotic-type DNA primase, catalytic (small) subunit [Replication, recombination and repair]
Probab=30.38 E-value=1.4e+02 Score=22.20 Aligned_cols=29 Identities=24% Similarity=0.609 Sum_probs=23.5
Q ss_pred CCceeecccc---CCCCCcc--cHHHHHHHHHHh
Q 034713 18 DGSICLDILQ---NQWSPIY--DVAAILTSIQSL 46 (86)
Q Consensus 18 ~G~vcl~~l~---~~W~p~~--~l~~vl~~i~~l 46 (86)
+|.||.++=- +...|.. ||.+++..|.++
T Consensus 336 Tg~VcVPidv~~~d~Fdp~~vPti~~l~eEl~~~ 369 (412)
T KOG2851|consen 336 TGRVCVPIDVSKVDEFDPEKVPTISDLLEELESL 369 (412)
T ss_pred CCceEeecchhhccccCcccCCcHHHHHHHHhhc
Confidence 9999998731 5676765 899999999888
No 59
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=29.38 E-value=2.8e+02 Score=23.06 Aligned_cols=54 Identities=15% Similarity=0.256 Sum_probs=35.1
Q ss_pred CCcccHHHHHHHHHHhhc-----CCCCCCC---ccHHHHHHHHh--------CHHHHHHHHHHHHHHHhh
Q 034713 31 SPIYDVAAILTSIQSLLC-----DPNPNSP---ANSEAARMFSE--------NKREYNRRVREIVEQSWT 84 (86)
Q Consensus 31 ~p~~~l~~vl~~i~~ll~-----~p~~~~p---~n~~aa~~~~~--------~~~~f~~~~~~~~~~~~~ 84 (86)
.-.+|+.++|..-+.|-. -|-.++. ...-+.+.+.. .|++|.+++.+|.+++..
T Consensus 53 Al~~tl~D~l~RykRM~G~~vl~~pG~DhAGIaTq~~VEk~l~~~g~~r~d~gRe~Fl~~~weWk~e~~~ 122 (877)
T COG0525 53 ALNYTLQDILARYKRMRGYNVLWPPGTDHAGIATQVVVEKQLAAEGITRHDLGREEFLKKCWEWKEESGG 122 (877)
T ss_pred hhhHHHHHHHHHHHHcCCCeeecCCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHH
Confidence 344577888877766644 3556553 33333444422 489999999999999864
No 60
>PF08771 Rapamycin_bind: Rapamycin binding domain; InterPro: IPR009076 Rapamycin and FK506 are potent immunosuppressive agents that bind to the FK506-binding protein (FKBP12), inhibiting its peptidyl-prolyl isomerase activity. The rapamycin-FKBP12 complex can then bind to and inhibit the FKBP12-rapamycin-associated protein (FRAP) in humans and RAFT1 in rats, causing cell-cycle arrest []. The FK506-FKBP12 complex cannot bind FRAP, but can bind to and inhibit calcineurin. Rapamycin is able to bind to two proteins, FKBP12 and FRAP, by simultaneously occupying two hydrophobic binding pockets, thereby linking these two proteins together to form a dimer []. The structure of the FKBP12-rapamycin-binding domain of FRAP consists of a core bundle of four helices arranged up-and-down in a left-handed twist. FRAP has been shown to interact in vitro with CLIP-170, a protein involved in microtubule organisation and function []. FRAP is thought to act as a kinase to phosphorylate CLIP-170, thereby regulating its binding to microtubules. FRAP is also thought to cooperate with p85/p110 phosphatidylinositol 3-kinase (PI3K) to induce the activation of the serine/threonine kinase p70 S6 kinase (p70S6K), which in turn phosphorylates the 40S ribosomal protein S6, thereby altering the translation of ribosomal proteins and translation elongation factors [].; GO: 0016772 transferase activity, transferring phosphorus-containing groups; PDB: 2NPU_A 2RSE_B 4FAP_B 1AUE_A 2GAQ_A 1FAP_B 2FAP_B 3FAP_B 1NSG_B.
Probab=28.76 E-value=1.3e+02 Score=17.69 Aligned_cols=44 Identities=18% Similarity=0.230 Sum_probs=28.6
Q ss_pred cHHHHHHHHHHhhcC-CCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHhh
Q 034713 35 DVAAILTSIQSLLCD-PNPNSPANSEAARMFSENKREYNRRVREIVEQSWT 84 (86)
Q Consensus 35 ~l~~vl~~i~~ll~~-p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~~~ 84 (86)
.+.++|..|..+|.. |++ +.....+..| ..-...|++|.++|..
T Consensus 32 ~m~~~L~pLh~~l~k~PeT--~~E~~F~~~f----g~~L~~A~~~~~~y~~ 76 (100)
T PF08771_consen 32 KMFKILEPLHEMLEKGPET--LREVSFAQAF----GRDLQEAREWLKRYER 76 (100)
T ss_dssp HHHHHHHHHHHHHHHS-SS--HHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCC--HHHHHHHHHH----HHHHHHHHHHHHHHhh
Confidence 477888888999987 665 3334444444 4446678888887754
No 61
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=28.43 E-value=1.2e+02 Score=17.22 Aligned_cols=30 Identities=17% Similarity=0.272 Sum_probs=23.9
Q ss_pred CCccHHHHHHHHhCHHHHHHHHHHHHHHHh
Q 034713 54 SPANSEAARMFSENKREYNRRVREIVEQSW 83 (86)
Q Consensus 54 ~p~n~~aa~~~~~~~~~f~~~~~~~~~~~~ 83 (86)
+|-+.+|-..|..-.....+..+++.++|.
T Consensus 25 HP~d~~Al~~y~~~~~~~~~l~~~Ye~~yG 54 (78)
T PF12652_consen 25 HPDDQEALEYYNEYSKQRKQLKKEYEKRYG 54 (78)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 788999999988877777777777777763
No 62
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=28.29 E-value=84 Score=20.34 Aligned_cols=19 Identities=26% Similarity=0.427 Sum_probs=9.3
Q ss_pred CCC-CcccHHHHHHHHHHhh
Q 034713 29 QWS-PIYDVAAILTSIQSLL 47 (86)
Q Consensus 29 ~W~-p~~~l~~vl~~i~~ll 47 (86)
+|| |.++-.+-+..|..++
T Consensus 141 ~~Sf~n~~~~~~~~~l~~~~ 160 (162)
T TIGR00315 141 DYSFPNLSKDEYLDYLRKLL 160 (162)
T ss_pred ceeccccCHHHHHHHHHHHh
Confidence 344 4455555555554443
No 63
>PF03037 KMP11: Kinetoplastid membrane protein 11; InterPro: IPR004132 Kinetoplastid membrane protein 11 is a major cell surface glycoprotein of the parasite Leishmania donovani. It stimulates T-cell proliferation and may play a role in the immunlogy of the dieases Leishmaniasis.; GO: 0006952 defense response, 0008284 positive regulation of cell proliferation
Probab=28.25 E-value=72 Score=18.18 Aligned_cols=25 Identities=16% Similarity=0.267 Sum_probs=12.6
Q ss_pred CCccHHHHHHHHhCHHHHHHHHHHHHHHH
Q 034713 54 SPANSEAARMFSENKREYNRRVREIVEQS 82 (86)
Q Consensus 54 ~p~n~~aa~~~~~~~~~f~~~~~~~~~~~ 82 (86)
+-+.++.... .+.|.+.+++.+.++
T Consensus 38 stlspemkeh----yekfe~miqehtdkf 62 (90)
T PF03037_consen 38 STLSPEMKEH----YEKFERMIQEHTDKF 62 (90)
T ss_pred cccCHHHHHH----HHHHHHHHHHHHHHH
Confidence 4455555443 445555555555443
No 64
>PF09280 XPC-binding: XPC-binding domain; InterPro: IPR015360 Members of this entry adopt a structure consisting of four alpha helices, arranged in an array. They bind specifically and directly to the xeroderma pigmentosum group C protein (XPC) to initiate nucleotide excision repair []. ; GO: 0003684 damaged DNA binding, 0006289 nucleotide-excision repair, 0043161 proteasomal ubiquitin-dependent protein catabolic process; PDB: 1PVE_A 1QZE_A 1OQY_A 1TP4_A 1X3W_B 3ESW_B 2QSG_X 2QSF_X 1X3Z_B 2QSH_X ....
Probab=27.58 E-value=1.1e+02 Score=16.39 Aligned_cols=21 Identities=19% Similarity=0.409 Sum_probs=17.9
Q ss_pred ccHHHHHHHHhCHHHHHHHHH
Q 034713 56 ANSEAARMFSENKREYNRRVR 76 (86)
Q Consensus 56 ~n~~aa~~~~~~~~~f~~~~~ 76 (86)
-|++.+.+...|+++|.+...
T Consensus 34 ~nP~l~q~I~~n~e~Fl~ll~ 54 (59)
T PF09280_consen 34 SNPQLLQLIQQNPEEFLRLLN 54 (59)
T ss_dssp CSHHHHHHHHHTHHHHHHHHH
T ss_pred cCHHHHHHHHHCHHHHHHHHc
Confidence 688899999999999988654
No 65
>PF05678 VQ: VQ motif; InterPro: IPR008889 This short motif is found in a variety of plant proteins. These proteins vary greatly in length and are mostly composed of low complexity regions. They all conserve a short motif FXhVQChTG, where X is any amino acid and h is a hydrophobic amino acid. The function of this motif is uncertain, however one protein in this family has been found to bind the SigA sigma factor Q9LDH1 from SWISSPROT. It would seem plausible that this motif is needed for this activity and that this whole family might be involved in modulating plastid sigma factors.
Probab=27.41 E-value=37 Score=15.93 Aligned_cols=18 Identities=6% Similarity=0.237 Sum_probs=13.8
Q ss_pred HHhCHHHHHHHHHHHHHH
Q 034713 64 FSENKREYNRRVREIVEQ 81 (86)
Q Consensus 64 ~~~~~~~f~~~~~~~~~~ 81 (86)
+..|...|...|++.|-+
T Consensus 8 i~~d~~~Fr~lVQ~LTG~ 25 (31)
T PF05678_consen 8 IHTDPSNFRALVQRLTGA 25 (31)
T ss_pred EEeCHHHHHHHHHHhHCc
Confidence 355788999999988744
No 66
>TIGR03772 anch_rpt_subst anchored repeat ABC transporter, substrate-binding protein. Members of this protein family are ABC transporter permease subunits as identified by pfam00950, but additionally contain the Actinobacterial insert domain described by TIGR03769. Some homologs (lacking the insert) have been described as transporters of manganese or of chelated iron. Members of this family typically are found along with an ATP-binding cassette protein, a permease, and an LPXTG-anchored protein with two or three copies of the TIGR03769 insert that occurs just once in this protein family.
Probab=26.95 E-value=1.7e+02 Score=22.34 Aligned_cols=45 Identities=20% Similarity=0.448 Sum_probs=33.1
Q ss_pred CCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHH
Q 034713 30 WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVE 80 (86)
Q Consensus 30 W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~ 80 (86)
|-....+..+...|..-|..-++++ +..|.+|.+.|.++.++.-+
T Consensus 314 WlDP~na~~~a~~Ia~~LselDP~n------a~~Y~~Na~ay~~eL~~Ld~ 358 (479)
T TIGR03772 314 WHNVKNAIAYVEVIRDKLIEVDPRG------AQAYRSNASAYIHRLERLDT 358 (479)
T ss_pred CcCHHHHHHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHHHHHHHH
Confidence 8777788888999988888555543 55777777777777665444
No 67
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=26.39 E-value=81 Score=21.13 Aligned_cols=49 Identities=14% Similarity=0.308 Sum_probs=34.1
Q ss_pred CCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHh
Q 034713 29 QWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSW 83 (86)
Q Consensus 29 ~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~~ 83 (86)
-|-....+..+...|..-|..-++. -+..|.+|.+.|.++.++..+++.
T Consensus 94 ~Wldp~~~~~~~~~Ia~~L~~~~P~------~~~~y~~N~~~~~~~L~~l~~~~~ 142 (256)
T PF01297_consen 94 VWLDPENAKKMAEAIADALSELDPA------NKDYYEKNAEKYLKELDELDAEIK 142 (256)
T ss_dssp GGGSHHHHHHHHHHHHHHHHHHTGG------GHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCcc------chHHHHHHHHHHHHHHHHHHHHHH
Confidence 3877777788888887777743332 255788888888888777666543
No 68
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=26.18 E-value=27 Score=22.46 Aligned_cols=25 Identities=8% Similarity=0.259 Sum_probs=17.6
Q ss_pred eccccCCCCCcccHHHHHHHHHHhh
Q 034713 23 LDILQNQWSPIYDVAAILTSIQSLL 47 (86)
Q Consensus 23 l~~l~~~W~p~~~l~~vl~~i~~ll 47 (86)
..+|...|+|.+++++.+.-+...|
T Consensus 135 ~~~L~~~~~~~ls~~ea~~l~~~~l 159 (189)
T cd03763 135 MSVLEDRYKPDMTEEEAKKLVCEAI 159 (189)
T ss_pred HHHHHhhcCCCCCHHHHHHHHHHHH
Confidence 4455678999999998887554433
No 69
>PF15249 GLTSCR1: Glioma tumor suppressor candidate region
Probab=26.17 E-value=1.5e+02 Score=17.60 Aligned_cols=52 Identities=10% Similarity=0.236 Sum_probs=29.9
Q ss_pred CCcccHHHHHHHH--HHhhcCCCCCCCccHH---HHHHHHhCHHHHHHHHHHHHHHH
Q 034713 31 SPIYDVAAILTSI--QSLLCDPNPNSPANSE---AARMFSENKREYNRRVREIVEQS 82 (86)
Q Consensus 31 ~p~~~l~~vl~~i--~~ll~~p~~~~p~n~~---aa~~~~~~~~~f~~~~~~~~~~~ 82 (86)
+|-.++.+++..| ..++..|.++..-... +-..|..--..|.++.+++..+|
T Consensus 19 tPF~s~~DA~~RLLPYHv~~~~~~~~~d~~~~~~~d~~~e~~~~~~~~~~~~~~~k~ 75 (109)
T PF15249_consen 19 TPFRSLEDAVERLLPYHVFQEPEEDEDDFEKASDWDEEFETVAAELLKRFEKMLNKY 75 (109)
T ss_pred CCCCCHHHHHHHhcchhhhcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778999999888 7788888766421111 22233333334455555554444
No 70
>PF04628 Sedlin_N: Sedlin, N-terminal conserved region; InterPro: IPR006722 Sedlin is a 140 amino-acid protein with a putative role in endoplasmic reticulum-to-Golgi transport. Several missense mutations and deletion mutations in the SEDL gene, which result in protein truncation by frame shift, are responsible for spondyloepiphyseal dysplasia tarda, a progressive skeletal disorder (OMIM:313400). [].; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005622 intracellular; PDB: 3PR6_A 2J3W_A 1H3Q_A.
Probab=26.06 E-value=1.4e+02 Score=18.18 Aligned_cols=42 Identities=19% Similarity=0.460 Sum_probs=25.4
Q ss_pred CcccHHHHHHHHHHh----hcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHH
Q 034713 32 PIYDVAAILTSIQSL----LCDPNPNSPANSEAARMFSENKREYNRRVREIVEQ 81 (86)
Q Consensus 32 p~~~l~~vl~~i~~l----l~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~ 81 (86)
...+|+.++..|..+ +++|--. .+..+. -+.|.+++++.++|
T Consensus 87 ~d~~ik~fF~~vh~~Y~~~~~NPF~~--~~~~I~------S~~Fd~~v~~l~~k 132 (132)
T PF04628_consen 87 RDEDIKQFFKEVHELYVKALCNPFYQ--PGTPIK------SPKFDSRVRALAKK 132 (132)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTSTTCG--CT-HHH------HHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHccCCCCC--CCCCcC------CHHHHHHHHHHhcC
Confidence 345788888887444 6677432 122221 35888999988875
No 71
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=24.37 E-value=32 Score=21.92 Aligned_cols=27 Identities=7% Similarity=0.174 Sum_probs=18.7
Q ss_pred eeeccccCCCCCcccHHHHHHHHHHhh
Q 034713 21 ICLDILQNQWSPIYDVAAILTSIQSLL 47 (86)
Q Consensus 21 vcl~~l~~~W~p~~~l~~vl~~i~~ll 47 (86)
.+..+|.+.|++.+++++.+.-+...|
T Consensus 135 ~~~~~Le~~~~~~~s~~ea~~l~~~~l 161 (185)
T TIGR03634 135 VAYGVLEDEYREDMSVEEAKKLAVRAI 161 (185)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 444566678999999888877554433
No 72
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=24.26 E-value=28 Score=22.14 Aligned_cols=27 Identities=11% Similarity=0.283 Sum_probs=18.8
Q ss_pred eeeccccCCCCCcccHHHHHHHHHHhh
Q 034713 21 ICLDILQNQWSPIYDVAAILTSIQSLL 47 (86)
Q Consensus 21 vcl~~l~~~W~p~~~l~~vl~~i~~ll 47 (86)
.+.++|...|+|.+++++.+.-+...|
T Consensus 135 ~~~~~Le~~~~~~~s~~ea~~~~~~~l 161 (189)
T cd01912 135 YAYGILDRGYKPDMTLEEAVELVKKAI 161 (189)
T ss_pred HHHHHHHhccCCCCCHHHHHHHHHHHH
Confidence 344566678999999888877654444
No 73
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=24.21 E-value=3.4e+02 Score=21.05 Aligned_cols=27 Identities=19% Similarity=0.298 Sum_probs=22.6
Q ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHhh
Q 034713 58 SEAARMFSENKREYNRRVREIVEQSWT 84 (86)
Q Consensus 58 ~~aa~~~~~~~~~f~~~~~~~~~~~~~ 84 (86)
.++.++-.+|++.|.+.|++..+++.+
T Consensus 282 ee~~~lr~~d~~~~~~~a~~sm~~hv~ 308 (561)
T COG2987 282 EEADELREEDPDKYRKLARASMARHVE 308 (561)
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHHHHH
Confidence 677888889999999999998777643
No 74
>COG3876 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.83 E-value=44 Score=24.51 Aligned_cols=43 Identities=9% Similarity=0.290 Sum_probs=31.9
Q ss_pred CCeEEEecCCccccccC-CCceeecccc-----CCCCCc---ccHHHHHHHH
Q 034713 1 MTDFKFQFCLVLAKVYA-DGSICLDILQ-----NQWSPI---YDVAAILTSI 43 (86)
Q Consensus 1 ~P~v~F~t~i~HPNV~~-~G~vcl~~l~-----~~W~p~---~~l~~vl~~i 43 (86)
.|-|.|..-.|-|..+. .|++|..++- ..+.|. .++..++..+
T Consensus 296 LpGV~Frp~~f~P~FsK~~gelc~GVql~v~D~k~f~pv~Tgl~i~~vik~l 347 (409)
T COG3876 296 LPGVTFRPFSFEPFFSKYKGELCSGVQLVVQDPKIFYPVETGLTIWGVIKDL 347 (409)
T ss_pred CCCeEEeeeecccchhhccceeecceEEEEeccccceeeeccceehhhhhhh
Confidence 47899999999999998 8999998762 235554 3566666544
No 75
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=23.50 E-value=35 Score=22.00 Aligned_cols=26 Identities=8% Similarity=0.112 Sum_probs=17.9
Q ss_pred eeccccCCCCCcccHHHHHHHHHHhh
Q 034713 22 CLDILQNQWSPIYDVAAILTSIQSLL 47 (86)
Q Consensus 22 cl~~l~~~W~p~~~l~~vl~~i~~ll 47 (86)
+..+|...|++.++.++.+.-+...|
T Consensus 135 ~~~~Le~~~~~~~s~eea~~l~~~~l 160 (188)
T cd03761 135 AYGVLDSGYRYDLSVEEAYDLARRAI 160 (188)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 34455678999999888877554433
No 76
>PF07217 Het-C: Heterokaryon incompatibility protein Het-C; InterPro: IPR010816 In filamentous fungi, het loci (for heterokaryon incompatibility) are believed to regulate self/nonself-recognition during vegetative growth. As filamentous fungi grow, hyphal fusion occurs within an individual colony to form a network. Hyphal fusion can occur also between different individuals to form a heterokaryon, in which genetically distinct nuclei occupy a common cytoplasm. However, heterokaryotic cells are viable only if the individuals involved have identical alleles at all het loci [].
Probab=23.49 E-value=2.8e+02 Score=21.99 Aligned_cols=33 Identities=30% Similarity=0.493 Sum_probs=25.1
Q ss_pred CCC-CCcccHHHHHHHHHHhhcCCCCCCCccHHHH
Q 034713 28 NQW-SPIYDVAAILTSIQSLLCDPNPNSPANSEAA 61 (86)
Q Consensus 28 ~~W-~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa 61 (86)
.-| .+...+..++..|...|..|...+. +.++-
T Consensus 498 ~AWdd~~vdv~~vl~~il~vfHHPa~rd~-~~eiq 531 (606)
T PF07217_consen 498 YAWDDPSVDVDRVLNDILRVFHHPAFRDM-NSEIQ 531 (606)
T ss_pred HHhCCCCCCHHHHHHHHHHHcCCcccCCc-hhHHH
Confidence 468 4555899999999889999988776 44443
No 77
>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]
Probab=23.13 E-value=45 Score=24.49 Aligned_cols=21 Identities=14% Similarity=0.333 Sum_probs=15.1
Q ss_pred CeEEEe--cCCccccccCCCceeeccc
Q 034713 2 TDFKFQ--FCLVLAKVYADGSICLDIL 26 (86)
Q Consensus 2 P~v~F~--t~i~HPNV~~~G~vcl~~l 26 (86)
|-+.|. |++||+||- +|.++-
T Consensus 226 P~iifsd~~~~w~~Nii----lC~SLS 248 (417)
T COG3977 226 PGIIFSDATPLWNENII----LCMSLS 248 (417)
T ss_pred CceecccccccCCCCEE----EEeehh
Confidence 556664 889999995 666653
No 78
>PHA02592 52 DNA topisomerase II medium subunit; Provisional
Probab=23.13 E-value=1.4e+02 Score=22.50 Aligned_cols=26 Identities=4% Similarity=0.096 Sum_probs=21.6
Q ss_pred CCCC---CcccHHHHHHHHHHhhcCCCCC
Q 034713 28 NQWS---PIYDVAAILTSIQSLLCDPNPN 53 (86)
Q Consensus 28 ~~W~---p~~~l~~vl~~i~~ll~~p~~~ 53 (86)
-+|+ |..++.+|+.++..+|.+|++.
T Consensus 167 vG~sT~IPphN~~evi~~~~~~l~~~~~~ 195 (439)
T PHA02592 167 TGYATNILPHSPKSVIKAVLAALNGKDIT 195 (439)
T ss_pred eeeecCCCCCCHHHHHHHHHHHhcCCCCC
Confidence 3574 6679999999999999998754
No 79
>TIGR03027 pepcterm_export putative polysaccharide export protein, PEP-CTERM sytem-associated. This protein family belongs to the larger set of polysaccharide biosynthesis/export proteins described by Pfam model pfam02563. Members of this family are variable in either containing of lacking a 78-residue insert, but appear to fall within a single clade, nevertheless, where the regions in which the gene is found encode components of the PEP-CTERM/EpsH proposed exosortase protein sorting system.
Probab=22.78 E-value=1.2e+02 Score=19.23 Aligned_cols=35 Identities=17% Similarity=0.188 Sum_probs=25.9
Q ss_pred cccCCCceeeccccCCCCCcccHHHHHHHHHHhhc
Q 034713 14 KVYADGSICLDILQNQWSPIYDVAAILTSIQSLLC 48 (86)
Q Consensus 14 NV~~~G~vcl~~l~~~W~p~~~l~~vl~~i~~ll~ 48 (86)
-|+++|.|-++.+..---...|+.++=..|+..|.
T Consensus 24 ~V~~dG~I~lP~iG~v~v~G~T~~e~~~~I~~~l~ 58 (165)
T TIGR03027 24 PVRPDGKITTPLVGDLVASGKTPTQLARDIEEKLA 58 (165)
T ss_pred EECCCCeEeecccCeEEECCCCHHHHHHHHHHHHH
Confidence 46789999999997656667777777666655553
No 80
>PF08262 Lem_TRP: Leucophaea maderae tachykinin-related peptide ; InterPro: IPR013206 These peptides are designated Leucophaea maderae (Madeira cockroach) tachykinin-related peptides (Lem TRPs). Some were isolated from the midgut of L. maderae, whereas others appear to be brain specific. The Lem TRPs of the brain are myotropic and induce increases in the amplitude and frequency of spontaneous contractions and tonus of hindgut muscle in L. maderae []. They were also isolated from brain-corpora, cardiaca-corpora, allata-suboesophageal ganglion extracts of Locusta migratoria (Migratory locust). They stimulate visceral muscle contractions of the oviduct and the foregut of L. migratoria [].
Probab=22.56 E-value=31 Score=12.04 Aligned_cols=7 Identities=14% Similarity=0.411 Sum_probs=3.8
Q ss_pred CCeEEEe
Q 034713 1 MTDFKFQ 7 (86)
Q Consensus 1 ~P~v~F~ 7 (86)
||++-|.
T Consensus 1 apsmgf~ 7 (10)
T PF08262_consen 1 APSMGFH 7 (10)
T ss_pred CCccccc
Confidence 4666553
No 81
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
Probab=21.91 E-value=1.5e+02 Score=16.17 Aligned_cols=42 Identities=17% Similarity=0.222 Sum_probs=31.8
Q ss_pred HHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHhh
Q 034713 43 IQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWT 84 (86)
Q Consensus 43 i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~~~ 84 (86)
|+.|+..-++...+.++|...+.+--+.|...+-+-+.++|.
T Consensus 7 l~~lv~~id~~~~~~~da~~~l~~~~e~fv~~v~~~a~~lAk 48 (72)
T cd07981 7 LQELLKEIDPREQLDPDVEELLLEIADDFVDDVVEDACRLAK 48 (72)
T ss_pred HHHHHHhhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555556667799999999988888888888877766654
No 82
>cd00392 Ribosomal_L13 Ribosomal protein L13. Protein L13, a large ribosomal subunit protein, is one of five proteins required for an early folding intermediate of 23S rRNA in the assembly of the large subunit. L13 is situated on the bottom of the large subunit, near the polypeptide exit site. It interacts with proteins L3 and L6, and forms an extensive network of interactions with 23S rRNA. L13 has been identified as a homolog of the human breast basic conserved protein 1 (BBC1), a protein identified through its increased expression in breast cancer. L13 expression is also upregulated in a variety of human gastrointestinal cancers, suggesting it may play a role in the etiology of a variety of human malignancies.
Probab=21.42 E-value=52 Score=20.00 Aligned_cols=10 Identities=10% Similarity=-0.267 Sum_probs=8.1
Q ss_pred cCCccccccC
Q 034713 8 FCLVLAKVYA 17 (86)
Q Consensus 8 t~i~HPNV~~ 17 (86)
-++||||++-
T Consensus 27 Kp~y~p~~d~ 36 (114)
T cd00392 27 KPTYTPHVDC 36 (114)
T ss_pred CCCcCCCccC
Confidence 3689999985
No 83
>PF14798 Ca_hom_mod: Calcium homeostasis modulator
Probab=20.87 E-value=1.2e+02 Score=21.08 Aligned_cols=31 Identities=10% Similarity=0.092 Sum_probs=22.2
Q ss_pred CCccHHHHHHHHh-CHHHHHHHHHHHHHHHhh
Q 034713 54 SPANSEAARMFSE-NKREYNRRVREIVEQSWT 84 (86)
Q Consensus 54 ~p~n~~aa~~~~~-~~~~f~~~~~~~~~~~~~ 84 (86)
+.+...--+.|.+ .++.|++++++++++.|+
T Consensus 207 s~lQ~kyW~~Y~~~E~~lF~~~~~eHA~~lA~ 238 (251)
T PF14798_consen 207 SFLQLKYWSIYIEKEQELFDETAKEHARKLAE 238 (251)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444456644 678999999999998876
No 84
>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [].; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.
Probab=20.67 E-value=1.7e+02 Score=16.09 Aligned_cols=43 Identities=14% Similarity=0.220 Sum_probs=29.3
Q ss_pred HHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHhh
Q 034713 42 SIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWT 84 (86)
Q Consensus 42 ~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~~~ 84 (86)
.|+.|+..-++...+++++..+...=-+.|...+-..+-+.|.
T Consensus 4 ~l~~Lv~~iDp~~~ld~~vee~Ll~laddFv~~v~~~ac~lAK 46 (68)
T PF03847_consen 4 KLQELVKQIDPNEKLDPDVEELLLELADDFVDDVVSFACRLAK 46 (68)
T ss_dssp HHHHHHHCC-SS----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677777778888899999999988888888888776655443
No 85
>PF09966 DUF2200: Uncharacterized protein conserved in bacteria (DUF2200); InterPro: IPR014580 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 3C9P_A.
Probab=20.63 E-value=37 Score=20.75 Aligned_cols=18 Identities=17% Similarity=0.071 Sum_probs=10.9
Q ss_pred CCccccccC-CCceeeccc
Q 034713 9 CLVLAKVYA-DGSICLDIL 26 (86)
Q Consensus 9 ~i~HPNV~~-~G~vcl~~l 26 (86)
|-+|||-.- +|.||---+
T Consensus 61 P~lNp~~~lItGvICGvrv 79 (111)
T PF09966_consen 61 PALNPNRSLITGVICGVRV 79 (111)
T ss_dssp S---GGGGG--SEETTEEG
T ss_pred cccCccHHHhcCcccceee
Confidence 458999986 999997544
No 86
>PF07075 DUF1343: Protein of unknown function (DUF1343); InterPro: IPR008302 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=20.61 E-value=3.6e+02 Score=19.87 Aligned_cols=46 Identities=15% Similarity=0.345 Sum_probs=31.8
Q ss_pred CeEEEecCCccccccC-CCceeecccc-----CCCCCcccHHHHHHHHHHhh
Q 034713 2 TDFKFQFCLVLAKVYA-DGSICLDILQ-----NQWSPIYDVAAILTSIQSLL 47 (86)
Q Consensus 2 P~v~F~t~i~HPNV~~-~G~vcl~~l~-----~~W~p~~~l~~vl~~i~~ll 47 (86)
|-|.|.+-.|.|.... .|+.|-.+-- +.+.|..+-..+|..|+.+.
T Consensus 254 ~Gv~frp~~f~P~~~k~~g~~c~Gv~l~v~d~~~f~p~~~~~~ll~~l~~~y 305 (365)
T PF07075_consen 254 PGVRFRPVSFTPTFSKYAGELCGGVQLHVTDREAFRPVRTGLALLSALKRLY 305 (365)
T ss_pred CCeeEeeeeeccCCCCCCCcEeeeEEEEEechhhcCHHHHHHHHHHHHHHhC
Confidence 6688988889999877 7999987532 34666655555555555554
No 87
>PF15167 DUF4581: Domain of unknown function (DUF4581)
Probab=20.44 E-value=25 Score=21.66 Aligned_cols=41 Identities=22% Similarity=0.480 Sum_probs=27.0
Q ss_pred ccCCCceeecccc--CCCCCcc-------cHHHHHHHHHHhhcCCCCCCC
Q 034713 15 VYADGSICLDILQ--NQWSPIY-------DVAAILTSIQSLLCDPNPNSP 55 (86)
Q Consensus 15 V~~~G~vcl~~l~--~~W~p~~-------~l~~vl~~i~~ll~~p~~~~p 55 (86)
|.....=||+.|+ .+|-++. .++.|+.+++-||.-|+.++-
T Consensus 53 vwsesedclpflqlaqdyisscGKk~l~e~leKvf~sf~pllglpd~ddd 102 (128)
T PF15167_consen 53 VWSESEDCLPFLQLAQDYISSCGKKTLTESLEKVFKSFRPLLGLPDADDD 102 (128)
T ss_pred EeecccchhHHHHHHHHHHHHhchhHHHHHHHHHHHhhhhccCCCCCcch
Confidence 4455677888875 4564443 355666677888888887763
No 88
>smart00803 TAF TATA box binding protein associated factor. TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.
Probab=20.43 E-value=1.6e+02 Score=15.88 Aligned_cols=30 Identities=13% Similarity=0.130 Sum_probs=24.5
Q ss_pred CccHHHHHHHHhCHHHHHHHHHHHHHHHhh
Q 034713 55 PANSEAARMFSENKREYNRRVREIVEQSWT 84 (86)
Q Consensus 55 p~n~~aa~~~~~~~~~f~~~~~~~~~~~~~ 84 (86)
.++.+++..+..+-+.|.+.+-+-+.+++.
T Consensus 19 ris~~a~~~l~~~~e~rl~~i~~~A~k~~~ 48 (65)
T smart00803 19 NLSDEAAKLLAEDVEYRIKEIVQEALKFMR 48 (65)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588889999998888888888887777654
No 89
>PF03234 CDC37_N: Cdc37 N terminal kinase binding; InterPro: IPR013855 In Saccharomyces cerevisiae (Baker's yeast), cell division control protein Cdc37 is required for the productive formation of Cdc28-cyclin complexes. Cdc37 may be a kinase targeting subunit of Hsp90 [].
Probab=20.26 E-value=39 Score=22.27 Aligned_cols=7 Identities=14% Similarity=0.121 Sum_probs=4.2
Q ss_pred ccccccC
Q 034713 11 VLAKVYA 17 (86)
Q Consensus 11 ~HPNV~~ 17 (86)
-||||+.
T Consensus 20 ~HPniD~ 26 (177)
T PF03234_consen 20 VHPNIDK 26 (177)
T ss_pred cCCCCCh
Confidence 4666664
Done!