BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034719
         (86 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4IP7|A Chain A, Structure Of The S12d Variant Of Human Liver Pyruvate
          Kinase In Complex With Citrate And Fbp.
 pdb|4IP7|B Chain B, Structure Of The S12d Variant Of Human Liver Pyruvate
          Kinase In Complex With Citrate And Fbp.
 pdb|4IP7|C Chain C, Structure Of The S12d Variant Of Human Liver Pyruvate
          Kinase In Complex With Citrate And Fbp.
 pdb|4IP7|D Chain D, Structure Of The S12d Variant Of Human Liver Pyruvate
          Kinase In Complex With Citrate And Fbp
          Length = 543

 Score = 26.2 bits (56), Expect = 5.0,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 16/21 (76%)

Query: 17 ALIASTFYQLLCLLDLESDDI 37
          A +A TF + LCLLD++S+ +
Sbjct: 32 AAMADTFLEHLCLLDIDSEPV 52


>pdb|4IMA|A Chain A, The Structure Of C436m-hlpyk In Complex With
          Citrate/mn/atp/fru-1,6-bp
 pdb|4IMA|B Chain B, The Structure Of C436m-hlpyk In Complex With
          Citrate/mn/atp/fru-1,6-bp
 pdb|4IMA|C Chain C, The Structure Of C436m-hlpyk In Complex With
          Citrate/mn/atp/fru-1,6-bp
 pdb|4IMA|D Chain D, The Structure Of C436m-hlpyk In Complex With
          Citrate/mn/atp/fru-1,6-bp
          Length = 543

 Score = 26.2 bits (56), Expect = 5.0,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 16/21 (76%)

Query: 17 ALIASTFYQLLCLLDLESDDI 37
          A +A TF + LCLLD++S+ +
Sbjct: 32 AAMADTFLEHLCLLDIDSEPV 52


>pdb|2VGG|A Chain A, Human Erythrocyte Pyruvate Kinase: R479h Mutant
 pdb|2VGG|B Chain B, Human Erythrocyte Pyruvate Kinase: R479h Mutant
 pdb|2VGG|C Chain C, Human Erythrocyte Pyruvate Kinase: R479h Mutant
 pdb|2VGG|D Chain D, Human Erythrocyte Pyruvate Kinase: R479h Mutant
          Length = 528

 Score = 26.2 bits (56), Expect = 5.0,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 16/21 (76%)

Query: 17 ALIASTFYQLLCLLDLESDDI 37
          A +A TF + LCLLD++S+ +
Sbjct: 17 AAMADTFLEHLCLLDIDSEPV 37


>pdb|2VGF|A Chain A, Human Erythrocyte Pyruvate Kinase: T384m Mutant
 pdb|2VGF|B Chain B, Human Erythrocyte Pyruvate Kinase: T384m Mutant
 pdb|2VGF|C Chain C, Human Erythrocyte Pyruvate Kinase: T384m Mutant
 pdb|2VGF|D Chain D, Human Erythrocyte Pyruvate Kinase: T384m Mutant
          Length = 528

 Score = 26.2 bits (56), Expect = 5.0,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 16/21 (76%)

Query: 17 ALIASTFYQLLCLLDLESDDI 37
          A +A TF + LCLLD++S+ +
Sbjct: 17 AAMADTFLEHLCLLDIDSEPV 37


>pdb|2VGI|A Chain A, Human Erythrocyte Pyruvate Kinase: R486w Mutant
 pdb|2VGI|B Chain B, Human Erythrocyte Pyruvate Kinase: R486w Mutant
 pdb|2VGI|C Chain C, Human Erythrocyte Pyruvate Kinase: R486w Mutant
 pdb|2VGI|D Chain D, Human Erythrocyte Pyruvate Kinase: R486w Mutant
          Length = 528

 Score = 26.2 bits (56), Expect = 5.0,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 16/21 (76%)

Query: 17 ALIASTFYQLLCLLDLESDDI 37
          A +A TF + LCLLD++S+ +
Sbjct: 17 AAMADTFLEHLCLLDIDSEPV 37


>pdb|2VGB|A Chain A, Human Erythrocyte Pyruvate Kinase
 pdb|2VGB|B Chain B, Human Erythrocyte Pyruvate Kinase
 pdb|2VGB|C Chain C, Human Erythrocyte Pyruvate Kinase
 pdb|2VGB|D Chain D, Human Erythrocyte Pyruvate Kinase
          Length = 528

 Score = 26.2 bits (56), Expect = 5.0,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 16/21 (76%)

Query: 17 ALIASTFYQLLCLLDLESDDI 37
          A +A TF + LCLLD++S+ +
Sbjct: 17 AAMADTFLEHLCLLDIDSEPV 37


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.334    0.146    0.492 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,015,385
Number of Sequences: 62578
Number of extensions: 49243
Number of successful extensions: 148
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 142
Number of HSP's gapped (non-prelim): 6
length of query: 86
length of database: 14,973,337
effective HSP length: 54
effective length of query: 32
effective length of database: 11,594,125
effective search space: 371012000
effective search space used: 371012000
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 45 (21.9 bits)