BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034719
(86 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9C7D7|CNIH1_ARATH Protein cornichon homolog 1 OS=Arabidopsis thaliana GN=At3g12180
PE=2 SV=1
Length = 146
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 44/86 (51%), Positives = 60/86 (69%)
Query: 1 MALIFLFWFLMSAINIALIASTFYQLLCLLDLESDDINPFEASSRINFWVEPEFLLQGLF 60
MA W + +++AL+AS FYQ++CL DLE+D +NPFE S+RIN V PEF+LQG
Sbjct: 1 MAWDLFLWIVSFFVSLALVASVFYQVICLTDLEADYLNPFETSTRINRLVIPEFILQGSL 60
Query: 61 CILLLVTGHWIMFLLGVPLVCYHVNL 86
C+L L+T HW+ FL+ VP+ YH L
Sbjct: 61 CLLFLLTWHWVFFLVAVPVTVYHAML 86
>sp|Q84W04|CNIH4_ARATH Protein cornichon homolog 4 OS=Arabidopsis thaliana GN=At1g12390
PE=1 SV=1
Length = 137
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/71 (52%), Positives = 52/71 (73%)
Query: 16 IALIASTFYQLLCLLDLESDDINPFEASSRINFWVEPEFLLQGLFCILLLVTGHWIMFLL 75
IAL+ YQL+CL DLE D INP++++SRIN V PEF++QG+ C+ L+TGHW M LL
Sbjct: 15 IALVGIIVYQLVCLADLEFDYINPYDSASRINSVVLPEFIVQGVLCVFYLLTGHWFMTLL 74
Query: 76 GVPLVCYHVNL 86
+P + Y+ +L
Sbjct: 75 CLPYLYYNFHL 85
>sp|Q9SZ74|CNIH5_ARATH Protein cornichon homolog 5 OS=Arabidopsis thaliana GN=At4g12090
PE=2 SV=2
Length = 135
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 47/70 (67%)
Query: 17 ALIASTFYQLLCLLDLESDDINPFEASSRINFWVEPEFLLQGLFCILLLVTGHWIMFLLG 76
LI YQL CL DLE D INP++ SSRIN V PEF LQGL C+ ++TGHW M +L
Sbjct: 16 TLIIIVIYQLTCLADLEFDRINPYDVSSRINRMVLPEFGLQGLLCLYYILTGHWFMAVLS 75
Query: 77 VPLVCYHVNL 86
+P + Y++ L
Sbjct: 76 LPHLFYNIRL 85
>sp|Q8GWT5|CNIH3_ARATH Protein cornichon homolog 3 OS=Arabidopsis thaliana GN=At1g62880
PE=2 SV=1
Length = 137
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 46/63 (73%)
Query: 24 YQLLCLLDLESDDINPFEASSRINFWVEPEFLLQGLFCILLLVTGHWIMFLLGVPLVCYH 83
YQL+ L DLE D INP++++SRINF V PE +LQG C+ LVTGHW M LL VP + Y+
Sbjct: 23 YQLISLADLEFDYINPYDSASRINFVVLPESILQGFLCVFYLVTGHWFMALLCVPYLYYN 82
Query: 84 VNL 86
+L
Sbjct: 83 FHL 85
>sp|Q3EDD7|CNIH2_ARATH Probable protein cornichon homolog 2 OS=Arabidopsis thaliana
GN=At1g12340 PE=2 SV=2
Length = 129
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 50/68 (73%)
Query: 19 IASTFYQLLCLLDLESDDINPFEASSRINFWVEPEFLLQGLFCILLLVTGHWIMFLLGVP 78
+A+ + L+CL DLE D INP++++SRIN V PEF++QG+ C+ L+TGHW M LL +P
Sbjct: 10 LANGIFHLVCLADLEFDYINPYDSASRINSVVLPEFIVQGVLCVFYLLTGHWFMTLLCLP 69
Query: 79 LVCYHVNL 86
+ Y+ +L
Sbjct: 70 YLYYNFHL 77
>sp|P53173|ERV14_YEAST ER-derived vesicles protein ERV14 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=ERV14 PE=1 SV=3
Length = 138
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 37/55 (67%)
Query: 31 DLESDDINPFEASSRINFWVEPEFLLQGLFCILLLVTGHWIMFLLGVPLVCYHVN 85
DLE+D INP E S++N + PE L G +L L+ G+W +FLL +P++ Y++N
Sbjct: 29 DLEADYINPIELCSKVNKLITPEAALHGALSLLFLLNGYWFVFLLNLPVLAYNLN 83
>sp|Q9CX13|CNIH4_MOUSE Protein cornichon homolog 4 OS=Mus musculus GN=Cnih4 PE=2 SV=1
Length = 139
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 49/83 (59%), Gaps = 3/83 (3%)
Query: 2 ALIFLFWFLMSAINIALIASTFYQLLCLLDLESDDINPFEASSRINFWVEPEFLLQGLFC 61
A++FLF L ALI + Y ++ L DLE D IN S++N WV PE + +
Sbjct: 3 AVVFLFSLLDCC---ALIFLSVYFIITLSDLECDYINARSCCSKLNKWVIPELVGHTIVT 59
Query: 62 ILLLVTGHWIMFLLGVPLVCYHV 84
+L+LV+ HW +FLL +P+ +++
Sbjct: 60 VLMLVSLHWFIFLLNLPVATWNI 82
>sp|Q3T126|CNIH4_BOVIN Protein cornichon homolog 4 OS=Bos taurus GN=CNIH4 PE=2 SV=1
Length = 139
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 42/68 (61%)
Query: 17 ALIASTFYQLLCLLDLESDDINPFEASSRINFWVEPEFLLQGLFCILLLVTGHWIMFLLG 76
ALI + Y ++ L DLE D IN S++N WV PE + L +L+L++ HW +FLL
Sbjct: 15 ALIFLSVYFIITLSDLECDYINARSCCSKLNKWVIPELVGHTLVTVLMLISLHWFIFLLN 74
Query: 77 VPLVCYHV 84
+P+ +++
Sbjct: 75 LPVAAWNI 82
>sp|Q6P3N5|CNIH4_XENTR Protein cornichon homolog 4 OS=Xenopus tropicalis GN=cnih4 PE=2
SV=1
Length = 139
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 42/68 (61%)
Query: 17 ALIASTFYQLLCLLDLESDDINPFEASSRINFWVEPEFLLQGLFCILLLVTGHWIMFLLG 76
ALI + Y ++ L DLE D IN S++N WV PE + + +L+LV+ HW +F+L
Sbjct: 15 ALIFLSVYFIITLSDLECDYINARSCCSKLNKWVVPELVGHTVVSVLMLVSLHWFIFILN 74
Query: 77 VPLVCYHV 84
+P+ +++
Sbjct: 75 LPVAAWNI 82
>sp|Q5R9M4|CNIH4_PONAB Protein cornichon homolog 4 OS=Pongo abelii GN=CNIH4 PE=2 SV=1
Length = 139
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 42/68 (61%)
Query: 17 ALIASTFYQLLCLLDLESDDINPFEASSRINFWVEPEFLLQGLFCILLLVTGHWIMFLLG 76
ALI + Y ++ L DLE D IN S++N WV PE + + +LLL++ HW +FLL
Sbjct: 15 ALIFLSVYFIITLSDLECDYINARSCCSKLNKWVIPELIGHTIVTVLLLMSLHWFIFLLN 74
Query: 77 VPLVCYHV 84
+P+ +++
Sbjct: 75 LPVATWNI 82
>sp|Q9P003|CNIH4_HUMAN Protein cornichon homolog 4 OS=Homo sapiens GN=CNIH4 PE=1 SV=1
Length = 139
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 42/68 (61%)
Query: 17 ALIASTFYQLLCLLDLESDDINPFEASSRINFWVEPEFLLQGLFCILLLVTGHWIMFLLG 76
ALI + Y ++ L DLE D IN S++N WV PE + + +LLL++ HW +FLL
Sbjct: 15 ALIFLSVYFIITLSDLECDYINARSCCSKLNKWVIPELIGHTIVTVLLLMSLHWFIFLLN 74
Query: 77 VPLVCYHV 84
+P+ +++
Sbjct: 75 LPVATWNI 82
>sp|P38312|ERV15_YEAST ER-derived vesicles protein ERV15 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=ERV15 PE=1 SV=1
Length = 142
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 32/55 (58%)
Query: 31 DLESDDINPFEASSRINFWVEPEFLLQGLFCILLLVTGHWIMFLLGVPLVCYHVN 85
DLE+D IN E R+N PE +LQ L L G+W +FLL VP++ Y+ +
Sbjct: 32 DLEADYINSIELCKRVNRLSVPEAILQAFISALFLFNGYWFVFLLNVPVLAYNAS 86
>sp|O14038|YEY5_SCHPO Uncharacterized protein C2C4.05 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC2C4.05 PE=3 SV=1
Length = 134
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 37/56 (66%)
Query: 31 DLESDDINPFEASSRINFWVEPEFLLQGLFCILLLVTGHWIMFLLGVPLVCYHVNL 86
DL+ D INP + S ++N++V PE Q +LLL++G WI FLL VP++ ++ +
Sbjct: 30 DLKDDFINPIDLSRKLNWYVLPEMGFQAFSALLLLLSGAWITFLLNVPMLAWNAKM 85
>sp|Q5RDB5|CNIH_PONAB Protein cornichon homolog OS=Pongo abelii GN=CNIH PE=2 SV=1
Length = 144
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 31 DLESDDINPFEASSRINFWVEPEFLLQGLFCILLLVTGHWIMFLLGVPLVCYHV 84
+L++D NP + + +N V PE+L+ FC++ L W+ L +PL+ YH+
Sbjct: 33 ELKTDYKNPIDQCNTLNPLVLPEYLIHAFFCVMFLCAAEWLTLGLNMPLLAYHI 86
>sp|O35372|CNIH_MOUSE Protein cornichon homolog OS=Mus musculus GN=Cnih PE=2 SV=2
Length = 144
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 31 DLESDDINPFEASSRINFWVEPEFLLQGLFCILLLVTGHWIMFLLGVPLVCYHV 84
+L++D NP + + +N V PE+L+ FC++ L W+ L +PL+ YH+
Sbjct: 33 ELKTDYKNPIDQCNTLNPLVLPEYLIHAFFCVMFLCAAEWLTLGLNMPLLAYHI 86
>sp|O95406|CNIH_HUMAN Protein cornichon homolog OS=Homo sapiens GN=CNIH PE=1 SV=1
Length = 144
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 31 DLESDDINPFEASSRINFWVEPEFLLQGLFCILLLVTGHWIMFLLGVPLVCYHV 84
+L++D NP + + +N V PE+L+ FC++ L W+ L +PL+ YH+
Sbjct: 33 ELKTDYKNPIDQCNTLNPLVLPEYLIHAFFCVMFLCAAEWLTLGLNMPLLAYHI 86
>sp|Q5BIN6|CNIH_BOVIN Protein cornichon homolog OS=Bos taurus GN=CNIH PE=2 SV=1
Length = 144
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 31 DLESDDINPFEASSRINFWVEPEFLLQGLFCILLLVTGHWIMFLLGVPLVCYHV 84
+L++D NP + + +N V PE+L+ FC++ L W+ L +PL+ YH+
Sbjct: 33 ELKTDYKNPIDQCNTLNPLVLPEYLIHAFFCVMFLCAAEWLTLGLNMPLLAYHI 86
>sp|Q22361|YFR3_CAEEL Uncharacterized protein T09E8.3 OS=Caenorhabditis elegans
GN=T09E8.3 PE=3 SV=2
Length = 145
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 16 IALIASTF------YQLLCLLDLESDDINPFEASSRINFWVEPEFLLQGLFCILLLVTGH 69
+ALIA F Y ++C+ +L +D NP E +N + PE+++ G F +L + +
Sbjct: 12 LALIAVGFCIFFAIYTVICVDELRTDYKNPIEQCRNLNQLILPEYIIHGTFTVLFIFSWQ 71
Query: 70 WIMFLLGVPLVCYHV 84
I L +PL YH+
Sbjct: 72 LISILANLPLAFYHI 86
>sp|Q5BL21|CNIH2_DANRE Protein cornichon homolog 2 OS=Danio rerio GN=cnih2 PE=2 SV=1
Length = 160
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 10/60 (16%)
Query: 35 DDINPFEASSRI----------NFWVEPEFLLQGLFCILLLVTGHWIMFLLGVPLVCYHV 84
D NP A RI V PE+ + GLFC++ + G W+ L +PL+ YH+
Sbjct: 43 DQSNPTRARERILNIERICNLLRRLVVPEYSIHGLFCLMFMCAGEWVTLGLNIPLLLYHL 102
>sp|P49858|CNI_DROME Protein cornichon OS=Drosophila melanogaster GN=cni PE=1 SV=1
Length = 144
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 16 IALIASTF------YQLLCLLDLESDDINPFEASSRINFWVEPEFLLQGLFCILLLVTGH 69
+ALI F + ++ +L++D NP + + +N V PE+LL +L L G
Sbjct: 12 VALIGDAFLIFFAIFHVIAFDELKTDYKNPIDQCNSLNPLVLPEYLLHIFLNLLFLFCGE 71
Query: 70 WIMFLLGVPLVCYHV 84
W + +PL+ YH+
Sbjct: 72 WFSLCINIPLIAYHI 86
>sp|Q5BJU5|CNIH2_RAT Protein cornichon homolog 2 OS=Rattus norvegicus GN=Cnih2 PE=1 SV=1
Length = 160
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 10/60 (16%)
Query: 35 DDINPFEASSRIN----------FWVEPEFLLQGLFCILLLVTGHWIMFLLGVPLVCYHV 84
D NP A R+ V PE+ + GLFC++ L W+ L +PL+ YH+
Sbjct: 43 DQGNPARARERLKNIERICCLLRKLVVPEYSIHGLFCLMFLCAAEWVTLGLNIPLLFYHL 102
>sp|O35089|CNIH2_MOUSE Protein cornichon homolog 2 OS=Mus musculus GN=Cnih2 PE=1 SV=2
Length = 160
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 10/60 (16%)
Query: 35 DDINPFEASSRIN----------FWVEPEFLLQGLFCILLLVTGHWIMFLLGVPLVCYHV 84
D NP A R+ V PE+ + GLFC++ L W+ L +PL+ YH+
Sbjct: 43 DQGNPARARERLKNIERICCLLRKLVVPEYSIHGLFCLMFLCAAEWVTLGLNIPLLFYHL 102
>sp|Q6PI25|CNIH2_HUMAN Protein cornichon homolog 2 OS=Homo sapiens GN=CNIH2 PE=1 SV=1
Length = 160
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 10/60 (16%)
Query: 35 DDINPFEASSRIN----------FWVEPEFLLQGLFCILLLVTGHWIMFLLGVPLVCYHV 84
D NP A R+ V PE+ + GLFC++ L W+ L +PL+ YH+
Sbjct: 43 DQGNPARARERLKNIERICCLLRKLVVPEYSIHGLFCLMFLCAAEWVTLGLNIPLLFYHL 102
>sp|Q68EY2|CNIH2_XENLA rotein cornichon homolog 2 OS=Xenopus laevis GN=cnih2 PE=2 SV=1
Length = 162
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 16/69 (23%)
Query: 31 DLESD------DINPFEASSRIN----------FWVEPEFLLQGLFCILLLVTGHWIMFL 74
DL +D NP A RI V PE+ + GLFC++ + W+
Sbjct: 33 DLRTDFKDPIEQGNPSRARERIKNVERVCCLLRKLVVPEYCIHGLFCLMFMCAAEWVTLG 92
Query: 75 LGVPLVCYH 83
L +PL+ YH
Sbjct: 93 LNIPLLFYH 101
>sp|Q0VFK3|CNIH2_XENTR Cornichon homolog 2 OS=Xenopus tropicalis GN=cnih2 PE=2 SV=1
Length = 162
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 10/59 (16%)
Query: 35 DDINPFEASSRIN----------FWVEPEFLLQGLFCILLLVTGHWIMFLLGVPLVCYH 83
+ NP A R+ V PE+ + GLFC++ + W+ L +PL+ YH
Sbjct: 43 EQGNPSRARERVKNVERICCLLRKLVVPEYCIHGLFCLMFMCAAEWVTLGLNIPLLFYH 101
>sp|Q6ZWS4|CNIH3_MOUSE Protein cornichon homolog 3 OS=Mus musculus GN=Cnih3 PE=2 SV=1
Length = 160
Score = 36.2 bits (82), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 10/59 (16%)
Query: 35 DDINPFEASSRIN----------FWVEPEFLLQGLFCILLLVTGHWIMFLLGVPLVCYH 83
D NP A R+ V PE+ + LFCI+ L W+ L VPL+ YH
Sbjct: 43 DQCNPVHARERLRNIERICFLLRKLVLPEYSIHSLFCIMFLCAQEWLTLGLNVPLLFYH 101
>sp|Q8TBE1|CNIH3_HUMAN Protein cornichon homolog 3 OS=Homo sapiens GN=CNIH3 PE=2 SV=1
Length = 160
Score = 36.2 bits (82), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 10/59 (16%)
Query: 35 DDINPFEASSRIN----------FWVEPEFLLQGLFCILLLVTGHWIMFLLGVPLVCYH 83
D NP A R+ V PE+ + LFCI+ L W+ L VPL+ YH
Sbjct: 43 DQCNPVHARERLRNIERICFLLRKLVLPEYSIHSLFCIMFLCAQEWLTLGLNVPLLFYH 101
>sp|P52159|CNI_DROVI Protein cornichon OS=Drosophila virilis GN=cni PE=3 SV=2
Length = 144
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 16 IALIASTF------YQLLCLLDLESDDINPFEASSRINFWVEPEFLLQGLFCILLLVTGH 69
+ALI F + ++ +L++D NP + + +N V PE+LL +L L G
Sbjct: 12 VALIGDAFLIFFAIFHVIAFDELKTDYKNPIDQCNSLNPLVLPEYLLHLFLNLLFLFCGE 71
Query: 70 WIMFLLGVPLVCYHV 84
W L +PL+ YH+
Sbjct: 72 WYSLCLNIPLIAYHI 86
>sp|D0Q0Y7|CNIH3_RAT Protein cornichon homolog 3 OS=Rattus norvegicus GN=Cnih3 PE=1 SV=1
Length = 160
Score = 35.8 bits (81), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 10/59 (16%)
Query: 35 DDINPFEASSRIN----------FWVEPEFLLQGLFCILLLVTGHWIMFLLGVPLVCYH 83
D NP A R+ V PE+ + LFC++ L W+ L VPL+ YH
Sbjct: 43 DQCNPVHARERLRNIERICFLLRKLVLPEYSIHSLFCVMFLCAQEWLTLGLNVPLLFYH 101
>sp|Q97VZ6|NFI_SULSO Endonuclease V OS=Sulfolobus solfataricus (strain ATCC 35092 / DSM
1617 / JCM 11322 / P2) GN=nfi PE=3 SV=1
Length = 198
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 11/70 (15%)
Query: 13 AINIALIASTFYQLLCLLDLESDDINPFEASSRINFWVEPEFL-----------LQGLFC 61
++IA + + + +D+ S D N +NF P FL ++GL C
Sbjct: 36 GVDIAYKGNLGFSVGVSMDINSGDYNYKSYVGEVNFPYIPGFLFMREAPLMIKAIEGLDC 95
Query: 62 ILLLVTGHWI 71
LLLV GH I
Sbjct: 96 HLLLVDGHGI 105
>sp|C3N977|NFI_SULIY Endonuclease V OS=Sulfolobus islandicus (strain Y.G.57.14 /
Yellowstone #1) GN=nfi PE=3 SV=1
Length = 198
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 11/70 (15%)
Query: 13 AINIALIASTFYQLLCLLDLESDDINPFEASSRINFWVEPEFL-----------LQGLFC 61
++IA + + + +D+ S D N +NF P FL ++GL C
Sbjct: 36 GVDIAYKGNLGFSVGVSMDINSGDYNYKSYVGEVNFPYIPGFLFMREAPLMIKAIEGLDC 95
Query: 62 ILLLVTGHWI 71
LLLV GH I
Sbjct: 96 HLLLVDGHGI 105
>sp|C3MKC9|NFI_SULIL Endonuclease V OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen
#1) GN=nfi PE=3 SV=1
Length = 198
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 11/70 (15%)
Query: 13 AINIALIASTFYQLLCLLDLESDDINPFEASSRINFWVEPEFL-----------LQGLFC 61
++IA + + + +D+ S D N +NF P FL ++GL C
Sbjct: 36 GVDIAYKGNLGFSVGVSMDINSGDYNYKSYVGEVNFPYIPGFLFMREAPLMIKAIEGLDC 95
Query: 62 ILLLVTGHWI 71
LLLV GH I
Sbjct: 96 HLLLVDGHGI 105
>sp|C4KKT0|NFI_SULIK Endonuclease V OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka
#3) GN=nfi PE=3 SV=1
Length = 198
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 11/70 (15%)
Query: 13 AINIALIASTFYQLLCLLDLESDDINPFEASSRINFWVEPEFL-----------LQGLFC 61
++IA + + + +D+ S D N +NF P FL ++GL C
Sbjct: 36 GVDIAYKGNLGFSVGVSMDINSGDYNYKSYVGEVNFPYIPGFLFMREAPLMIKAIEGLDC 95
Query: 62 ILLLVTGHWI 71
LLLV GH I
Sbjct: 96 HLLLVDGHGI 105
>sp|C3MU99|NFI_SULIM Endonuclease V OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka
#1) GN=nfi PE=3 SV=1
Length = 198
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 11/70 (15%)
Query: 13 AINIALIASTFYQLLCLLDLESDDINPFEASSRINFWVEPEFL-----------LQGLFC 61
++IA + + + +D+ S D N +NF P FL ++GL C
Sbjct: 36 GVDIAYKGNLGFSVGVSMDINSGDYNYKSYVGEVNFPYIPGFLFMREAPLMIKAIEGLDC 95
Query: 62 ILLLVTGHWI 71
LLLV GH I
Sbjct: 96 HLLLVDGHGI 105
>sp|C3N187|NFI_SULIA Endonuclease V OS=Sulfolobus islandicus (strain M.16.27) GN=nfi
PE=3 SV=1
Length = 198
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 11/70 (15%)
Query: 13 AINIALIASTFYQLLCLLDLESDDINPFEASSRINFWVEPEFL-----------LQGLFC 61
++IA + + + +D+ S D N +NF P FL ++GL C
Sbjct: 36 GVDIAYKGNLGFSVGVSMDINSGDYNYKSYVGEVNFPYIPGFLFMREAPLMIKAIEGLDC 95
Query: 62 ILLLVTGHWI 71
LLLV GH I
Sbjct: 96 HLLLVDGHGI 105
>sp|C3NMU5|NFI_SULIN Endonuclease V OS=Sulfolobus islandicus (strain Y.N.15.51 /
Yellowstone #2) GN=nfi PE=3 SV=1
Length = 198
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 11/70 (15%)
Query: 13 AINIALIASTFYQLLCLLDLESDDINPFEASSRINFWVEPEFL-----------LQGLFC 61
++IA + + + +D+ S D N +NF P FL ++GL C
Sbjct: 36 GVDIAYKGNLGFSVGVSMDINSGDYNYKSYVGEVNFPYIPGFLFMREAPLMIKAIEGLDC 95
Query: 62 ILLLVTGHWI 71
LLLV GH I
Sbjct: 96 HLLLVDGHGI 105
>sp|Q401C0|CNIH2_CHICK Protein cornichon homolog 2 OS=Gallus gallus GN=CNIH2 PE=1 SV=1
Length = 160
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 10/47 (21%)
Query: 35 DDINPFEASSRIN----------FWVEPEFLLQGLFCILLLVTGHWI 71
D NP A R+ V PE+ + GLFC++ L W+
Sbjct: 43 DQGNPARARERLKNIERICCLLRKLVVPEYCIHGLFCLMFLCAAEWV 89
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.337 0.149 0.499
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,058,701
Number of Sequences: 539616
Number of extensions: 898755
Number of successful extensions: 3330
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 3298
Number of HSP's gapped (non-prelim): 40
length of query: 86
length of database: 191,569,459
effective HSP length: 56
effective length of query: 30
effective length of database: 161,350,963
effective search space: 4840528890
effective search space used: 4840528890
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 55 (25.8 bits)