Query 034719
Match_columns 86
No_of_seqs 102 out of 209
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 05:45:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034719.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034719hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2729 ER vesicle integral me 100.0 1E-38 2.3E-43 221.4 9.2 86 1-86 3-88 (137)
2 PF03311 Cornichon: Cornichon 100.0 4.3E-37 9.3E-42 210.5 9.6 86 1-86 1-87 (128)
3 PLN00174 predicted protein; Pr 100.0 3.4E-30 7.4E-35 182.5 8.7 78 9-86 16-93 (160)
4 PF01405 PsbT: Photosystem II 83.0 2.4 5.2E-05 22.6 3.1 22 4-25 2-23 (29)
5 PRK11875 psbT photosystem II r 81.3 2.9 6.3E-05 22.6 3.1 22 4-25 2-23 (31)
6 CHL00031 psbT photosystem II p 77.3 3.1 6.6E-05 22.8 2.4 22 4-25 2-23 (33)
7 COG0382 UbiA 4-hydroxybenzoate 34.1 2E+02 0.0043 21.4 8.4 53 14-66 54-108 (289)
8 PF10762 DUF2583: Protein of u 32.6 72 0.0016 21.0 3.2 32 41-72 28-59 (89)
9 PF11044 TMEMspv1-c74-12: Plec 31.3 1.1E+02 0.0025 17.8 3.6 23 5-27 4-29 (49)
10 PF10742 DUF2555: Protein of u 31.2 25 0.00053 21.4 0.8 15 33-47 23-37 (57)
11 PRK10692 hypothetical protein; 29.9 99 0.0021 20.4 3.5 32 41-72 28-59 (92)
12 KOG2443 Uncharacterized conser 27.0 69 0.0015 25.9 2.9 30 43-72 147-176 (362)
13 PF06783 UPF0239: Uncharacteri 25.9 1.3E+02 0.0028 19.6 3.6 21 10-30 18-38 (85)
14 PF02346 Vac_Fusion: Chordopox 23.1 20 0.00044 21.6 -0.6 21 28-48 9-29 (57)
15 KOG1340 Prosaposin [Lipid tran 22.9 71 0.0015 23.9 2.2 29 20-49 82-110 (218)
16 KOG4489 Uncharacterized conser 20.1 2.2E+02 0.0047 18.5 3.7 31 4-34 28-64 (87)
No 1
>KOG2729 consensus ER vesicle integral membrane protein involved in establishing cell polarity, signaling and protein degradation [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=100.00 E-value=1e-38 Score=221.41 Aligned_cols=86 Identities=45% Similarity=0.860 Sum_probs=83.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCChHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034719 1 MALIFLFWFLMSAINIALIASTFYQLLCLLDLESDDINPFEASSRINFWVEPEFLLQGLFCILLLVTGHWIMFLLGVPLV 80 (86)
Q Consensus 1 m~~~~~~~i~all~~~~ll~~~vy~li~l~DLe~D~iNp~d~c~~lN~lv~PE~~~h~~l~~l~ll~g~W~~~lln~Pl~ 80 (86)
|.+++++|..+++.+++++++++||+|+++|||+||+||+|+|||+||+|+||++.||++|++++++|||+++++|+|++
T Consensus 3 ~~~~~~~~~~~~l~~~~li~~~iy~vI~~~DLe~DyiNPid~c~rlN~lVlPE~ilh~~KOGlfLl~g~W~~fllnlP~l 82 (137)
T KOG2729|consen 3 FTFAAFLYTLSLLVCAALIFLQIYFVICLADLETDYINPIDLCSRLNRLVLPEFILHGLLCLLFLLTGHWFMFLLNLPLL 82 (137)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHccHHH
Confidence 45788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcC
Q 034719 81 CYHVNL 86 (86)
Q Consensus 81 ~y~~~~ 86 (86)
+||+|+
T Consensus 83 ~y~~~~ 88 (137)
T KOG2729|consen 83 AYNAWL 88 (137)
T ss_pred HHHHHH
Confidence 999974
No 2
>PF03311 Cornichon: Cornichon protein; InterPro: IPR003377 The drosophila cornichon protein (gene: cni) [] is required in the germline for dorsal-ventral signalling. The dorsal-ventral pattern formation involves a reorganisation of the microtubule network correlated with the movement of the oocyte nucleus, and depending on the initial correct establishment of the anterior-posterior axis via a signal from the oocyte produced by cornichon and gurken and received by torpedo protein in the follicle cells. The biochemical function of the cornichon protein is currently not known. It is a protein of 144 residues that seems to contain three transmembrane regions. ; GO: 0035556 intracellular signal transduction, 0016020 membrane
Probab=100.00 E-value=4.3e-37 Score=210.51 Aligned_cols=86 Identities=44% Similarity=0.941 Sum_probs=84.1
Q ss_pred ChHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhccccCChHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034719 1 MALIFL-FWFLMSAINIALIASTFYQLLCLLDLESDDINPFEASSRINFWVEPEFLLQGLFCILLLVTGHWIMFLLGVPL 79 (86)
Q Consensus 1 m~~~~~-~~i~all~~~~ll~~~vy~li~l~DLe~D~iNp~d~c~~lN~lv~PE~~~h~~l~~l~ll~g~W~~~lln~Pl 79 (86)
|+++.+ .|++|++++++++++++||++++||||+||+||+|+|||+||+|+||+++|++++++++++|||+++++|+|+
T Consensus 1 m~~~~~~~~i~alll~~~ll~~~vy~ii~l~DLe~D~iNp~d~c~~lN~lv~pE~~~h~~l~~l~ll~g~w~~~llnlPl 80 (128)
T PF03311_consen 1 MAFDFIVLWILALLLTAALLFIVVYFIICLSDLECDYINPIDLCSRLNPLVLPEYIIHGFLCLLFLLTGHWFLFLLNLPL 80 (128)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888887 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhcC
Q 034719 80 VCYHVNL 86 (86)
Q Consensus 80 ~~y~~~~ 86 (86)
++||+|+
T Consensus 81 ~~y~~~~ 87 (128)
T PF03311_consen 81 LAYHIYR 87 (128)
T ss_pred HHHHHHH
Confidence 9999974
No 3
>PLN00174 predicted protein; Provisional
Probab=99.96 E-value=3.4e-30 Score=182.53 Aligned_cols=78 Identities=26% Similarity=0.475 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccCChHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 034719 9 FLMSAINIALIASTFYQLLCLLDLESDDINPFEASSRINFWVEPEFLLQGLFCILLLVTGHWIMFLLGVPLVCYHVNL 86 (86)
Q Consensus 9 i~all~~~~ll~~~vy~li~l~DLe~D~iNp~d~c~~lN~lv~PE~~~h~~l~~l~ll~g~W~~~lln~Pl~~y~~~~ 86 (86)
....+.++.......|....+||||+||+||+|+|+|+||+|+||+++|+++|++|+++|||+++++|+|+++||+++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~lsDLE~DYiNPiD~CnrLN~lVlPEyiiH~~l~lLfLltG~W~~fLLNlPll~Yhv~~ 93 (160)
T PLN00174 16 SMGLVSTFMVIICLGYTYKLLQDLSTDTVNPVEVCDKVNQLKVPEYLAHLFLSIAFVIRGWWIVGFLNFPFIFYNFAQ 93 (160)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHhhhccCCHHHHHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667777888999999999999999999999999999999999999999999999999999999999999975
No 4
>PF01405 PsbT: Photosystem II reaction centre T protein; InterPro: IPR001743 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbT found in PSII, which is thought to be associated with the D1 (PsbA) - D2 (PsbD) heterodimer. PsbT may be involved in the formation and/or stabilisation of dimeric PSII complexes, because in the absence of this protein dimeric PSII complexes were found to be less abundant. Furthermore, although PsbT does not confer photo-protection, it is required for the efficient recovery of photo-damaged PSII [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3BZ1_T 1S5L_t 2AXT_t 3KZI_T 3PRQ_T 3BZ2_T 3PRR_T 4FBY_g 3A0H_t 3A0B_T ....
Probab=82.98 E-value=2.4 Score=22.57 Aligned_cols=22 Identities=5% Similarity=0.105 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 034719 4 IFLFWFLMSAINIALIASTFYQ 25 (86)
Q Consensus 4 ~~~~~i~all~~~~ll~~~vy~ 25 (86)
|++.|.+.++.+.+.+|+++++
T Consensus 2 Ea~vY~~ll~~tlgilffAI~F 23 (29)
T PF01405_consen 2 EALVYTFLLIGTLGILFFAIFF 23 (29)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS
T ss_pred chhHHHHHHHHHHHHHHhhhhc
Confidence 8899999999999999988764
No 5
>PRK11875 psbT photosystem II reaction center protein T; Reviewed
Probab=81.32 E-value=2.9 Score=22.55 Aligned_cols=22 Identities=5% Similarity=0.046 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 034719 4 IFLFWFLMSAINIALIASTFYQ 25 (86)
Q Consensus 4 ~~~~~i~all~~~~ll~~~vy~ 25 (86)
|++.|.+-++.+.+.+|++|++
T Consensus 2 Eal~Ytfll~~tlgiiFFAIfF 23 (31)
T PRK11875 2 ESFAYILILTLALVTLFFAIAF 23 (31)
T ss_pred hhHHHHHHHHHHHHHHHHhhhc
Confidence 7899999999999999988765
No 6
>CHL00031 psbT photosystem II protein T
Probab=77.35 E-value=3.1 Score=22.75 Aligned_cols=22 Identities=9% Similarity=0.178 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 034719 4 IFLFWFLMSAINIALIASTFYQ 25 (86)
Q Consensus 4 ~~~~~i~all~~~~ll~~~vy~ 25 (86)
|++.|.+-++.+.+.+|++|++
T Consensus 2 EalvYtfll~~tlgilFFAI~F 23 (33)
T CHL00031 2 EALVYTFLLVSTLGIIFFAIFF 23 (33)
T ss_pred chhHHHHHHHHHHHHHHHhhee
Confidence 7899999999999999988764
No 7
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=34.06 E-value=2e+02 Score=21.40 Aligned_cols=53 Identities=28% Similarity=0.251 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHhhhccccCChHHHhhccc--cchHHHHHHHHHHHHHHHH
Q 034719 14 INIALIASTFYQLLCLLDLESDDINPFEASSRIN--FWVEPEFLLQGLFCILLLV 66 (86)
Q Consensus 14 ~~~~ll~~~vy~li~l~DLe~D~iNp~d~c~~lN--~lv~PE~~~h~~l~~l~ll 66 (86)
+.+...-...|-+==+-|.|-|-+||....|.+. +.-.+|...-........+
T Consensus 54 l~~~~~~~ag~~iND~~D~eiD~~n~rt~~RPl~sG~vS~~~a~~~~~~~~~~~~ 108 (289)
T COG0382 54 LAFFLARSAGYVINDLADREIDRINPRTKNRPLPSGRVSVKEALLLAILLLLLGL 108 (289)
T ss_pred HHHHHHHHHhHHHHHHhhhhccCCCCCccCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 3444555566677778899999999997778777 4666666655555444433
No 8
>PF10762 DUF2583: Protein of unknown function (DUF2583) ; InterPro: IPR019698 Some members in this entry are annotated as YchH however currently no function is known.
Probab=32.60 E-value=72 Score=20.96 Aligned_cols=32 Identities=22% Similarity=0.387 Sum_probs=25.2
Q ss_pred HHhhccccchHHHHHHHHHHHHHHHHHHHHHH
Q 034719 41 EASSRINFWVEPEFLLQGLFCILLLVTGHWIM 72 (86)
Q Consensus 41 d~c~~lN~lv~PE~~~h~~l~~l~ll~g~W~~ 72 (86)
...+++-++=+||+.+|+.+.-+|.=.--|+.
T Consensus 28 si~~~~~~L~Lp~~~~~gal~~IFiGAllWL~ 59 (89)
T PF10762_consen 28 SILSQIPQLGLPQFLAHGALFSIFIGALLWLV 59 (89)
T ss_pred HHHHhcccCCCcHHHHhhHHHHHHHHHHHHHh
Confidence 34677888999999999998888776666654
No 9
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=31.34 E-value=1.1e+02 Score=17.83 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHH
Q 034719 5 FLFWFLMSAINIAL---IASTFYQLL 27 (86)
Q Consensus 5 ~~~~i~all~~~~l---l~~~vy~li 27 (86)
-..|+++.++..+. +++++||=|
T Consensus 4 wlt~iFsvvIil~If~~iGl~IyQki 29 (49)
T PF11044_consen 4 WLTTIFSVVIILGIFAWIGLSIYQKI 29 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677777766655 778888843
No 10
>PF10742 DUF2555: Protein of unknown function (DUF2555); InterPro: IPR019678 This entry represents conserved proteins found in Cyanobacteria. The function is not known.
Probab=31.16 E-value=25 Score=21.37 Aligned_cols=15 Identities=33% Similarity=0.492 Sum_probs=11.5
Q ss_pred ccccCChHHHhhccc
Q 034719 33 ESDDINPFEASSRIN 47 (86)
Q Consensus 33 e~D~iNp~d~c~~lN 47 (86)
|+||.||.|.-+.-|
T Consensus 23 ~DdY~~pF~~L~DWh 37 (57)
T PF10742_consen 23 EDDYPNPFDGLKDWH 37 (57)
T ss_pred hccCCchhhhhhHHH
Confidence 478999999876544
No 11
>PRK10692 hypothetical protein; Provisional
Probab=29.90 E-value=99 Score=20.42 Aligned_cols=32 Identities=13% Similarity=0.310 Sum_probs=25.4
Q ss_pred HHhhccccchHHHHHHHHHHHHHHHHHHHHHH
Q 034719 41 EASSRINFWVEPEFLLQGLFCILLLVTGHWIM 72 (86)
Q Consensus 41 d~c~~lN~lv~PE~~~h~~l~~l~ll~g~W~~ 72 (86)
...+.+=++=+||+.+|+.+.-+|.=.--|+.
T Consensus 28 si~~~i~~L~Lp~~~~~gal~~IFiGAllWL~ 59 (92)
T PRK10692 28 SILNQLPQLNLPQFFAHGALLSIFVGALLWLA 59 (92)
T ss_pred HHHHhcccCCchHHHHhhHHHHHHHHHHHHHh
Confidence 34678889999999999998888876666654
No 12
>KOG2443 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.00 E-value=69 Score=25.92 Aligned_cols=30 Identities=17% Similarity=0.410 Sum_probs=23.8
Q ss_pred hhccccchHHHHHHHHHHHHHHHHHHHHHH
Q 034719 43 SSRINFWVEPEFLLQGLFCILLLVTGHWIM 72 (86)
Q Consensus 43 c~~lN~lv~PE~~~h~~l~~l~ll~g~W~~ 72 (86)
|-+.++--+=-...-...++.++++|||+.
T Consensus 147 ~~~Ft~~~iv~~vls~~i~v~~ll~~HWl~ 176 (362)
T KOG2443|consen 147 NGKFTRAQIVALVLSSMIVVWYLLTKHWLA 176 (362)
T ss_pred cccccHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 556666666667777888999999999985
No 13
>PF06783 UPF0239: Uncharacterised protein family (UPF0239); InterPro: IPR009621 This is a group of transmembrane proteins of unknown function.; GO: 0016021 integral to membrane
Probab=25.90 E-value=1.3e+02 Score=19.56 Aligned_cols=21 Identities=24% Similarity=0.676 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 034719 10 LMSAINIALIASTFYQLLCLL 30 (86)
Q Consensus 10 ~all~~~~ll~~~vy~li~l~ 30 (86)
+..++--+|.+-++||+||+.
T Consensus 18 ~e~llRYGLf~GAIFQliCil 38 (85)
T PF06783_consen 18 FENLLRYGLFVGAIFQLICIL 38 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345667788888999999875
No 14
>PF02346 Vac_Fusion: Chordopoxvirus fusion protein; InterPro: IPR003436 This is a family of viral fusion proteins from the Chordopoxvirinae. A 14kDa Vaccinia virus protein has been demonstrated to function as a viral fusion protein mediating cell fusion at endosmomal (low) pH []. The protein, found in the envelope fraction of the virions, is required for fusing the outermost of the two golgi-derived membranes enveloping the virus with the plasma membrane, and its subsequent release extracellularly. The N-terminal proximal region is essential for its fusion ability.; GO: 0019064 viral envelope fusion with host membrane, 0019031 viral envelope
Probab=23.14 E-value=20 Score=21.58 Aligned_cols=21 Identities=24% Similarity=0.142 Sum_probs=17.7
Q ss_pred HHhhhccccCChHHHhhcccc
Q 034719 28 CLLDLESDDINPFEASSRINF 48 (86)
Q Consensus 28 ~l~DLe~D~iNp~d~c~~lN~ 48 (86)
-+..||.++.+.+++|+..+.
T Consensus 9 rl~~Lek~~~~~~~~c~~~~~ 29 (57)
T PF02346_consen 9 RLMVLEKDFRNAIKCCKENSE 29 (57)
T ss_pred HHHHHHHHHHHHHHHHHhhhH
Confidence 356799999999999998774
No 15
>KOG1340 consensus Prosaposin [Lipid transport and metabolism; Carbohydrate transport and metabolism]
Probab=22.94 E-value=71 Score=23.88 Aligned_cols=29 Identities=21% Similarity=0.256 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhhhccccCChHHHhhccccc
Q 034719 20 ASTFYQLLCLLDLESDDINPFEASSRINFW 49 (86)
Q Consensus 20 ~~~vy~li~l~DLe~D~iNp~d~c~~lN~l 49 (86)
|.--|-=..++++|+. .||.|.|+|+|--
T Consensus 82 fv~~y~~~ii~~l~~~-~~P~~vC~~l~lC 110 (218)
T KOG1340|consen 82 FVDSYLDPIIKELESG-TAPEDVCKKLNLC 110 (218)
T ss_pred HHHHhhhHHHHHHHhc-cCHHHHHHHhccC
Confidence 3344445567788877 9999999999954
No 16
>KOG4489 consensus Uncharacterized conserved protein BC10 (implicated in bladder cancer in humans) [Function unknown]
Probab=20.07 E-value=2.2e+02 Score=18.47 Aligned_cols=31 Identities=16% Similarity=0.291 Sum_probs=23.7
Q ss_pred HHHHHHHHHHH------HHHHHHHHHHHHHHHhhhcc
Q 034719 4 IFLFWFLMSAI------NIALIASTFYQLLCLLDLES 34 (86)
Q Consensus 4 ~~~~~i~all~------~~~ll~~~vy~li~l~DLe~ 34 (86)
-.+.|+.+|++ .++++|+.--.+||.||-..
T Consensus 28 Fm~fYlvgFfLERkPCtICslvFl~AlsLiCYS~~gn 64 (87)
T KOG4489|consen 28 FMWFYLVGFFLERKPCTICSLVFLIALSLICYSDPGN 64 (87)
T ss_pred HHHHHHHHHHhccCCceehHHHHHHHHHHHhhcCCCC
Confidence 45677888875 46788888889999998653
Done!