Query 034719
Match_columns 86
No_of_seqs 102 out of 209
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 09:08:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034719.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034719hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3arc_T Photosystem II reaction 81.7 2.1 7.2E-05 22.5 3.4 22 4-25 2-23 (32)
2 4dy0_A GLIA-derived nexin; ser 25.2 16 0.00054 27.1 0.1 17 34-50 122-138 (379)
3 1f0c_A ICE inhibitor; apoptosi 22.7 18 0.0006 26.1 -0.0 18 33-51 87-104 (305)
4 3ndd_A Alpha-1-antitrypsin; se 21.9 20 0.00069 26.2 0.1 18 34-51 130-147 (343)
5 3dy0_A N-terminus plasma serin 21.9 20 0.00069 26.2 0.1 18 34-51 124-141 (336)
6 3cjs_B 50S ribosomal protein L 21.9 23 0.00078 21.2 0.3 13 36-48 31-43 (72)
7 4au2_A HSP47, serpin peptidase 19.4 24 0.00083 26.3 0.1 17 34-50 127-143 (392)
8 3bqp_A Proactivator polypeptid 18.3 1.2E+02 0.0042 16.7 3.1 26 21-47 51-76 (80)
9 1n0x_P B2.1 peptide, immunoglo 18.1 13 0.00045 18.2 -1.1 11 28-38 6-16 (26)
10 3f02_A Neuroserpin; cleaved fo 18.0 28 0.00094 25.7 0.1 18 34-51 136-153 (359)
No 1
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=81.66 E-value=2.1 Score=22.46 Aligned_cols=22 Identities=18% Similarity=0.161 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 034719 4 IFLFWFLMSAINIALIASTFYQ 25 (86)
Q Consensus 4 ~~~~~i~all~~~~ll~~~vy~ 25 (86)
|++.|.+.++.+.+.+|++|++
T Consensus 2 Ea~vYt~ll~~tlgiiFFAI~F 23 (32)
T 3arc_T 2 ETITYVFIFACIIALFFFAIFF 23 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHhhhh
Confidence 7899999999999999888764
No 2
>4dy0_A GLIA-derived nexin; serpin, protease inhibitor, thrombin, cell surface, hydrolas inhibitor; HET: IDS SGN; 2.35A {Homo sapiens} PDB: 4dy7_C
Probab=25.16 E-value=16 Score=27.15 Aligned_cols=17 Identities=35% Similarity=0.542 Sum_probs=15.5
Q ss_pred cccCChHHHhhccccch
Q 034719 34 SDDINPFEASSRINFWV 50 (86)
Q Consensus 34 ~D~iNp~d~c~~lN~lv 50 (86)
-|+.||-+..++||+||
T Consensus 122 vdF~~~~~a~~~IN~wV 138 (379)
T 4dy0_A 122 VNFEDPASACDSINAWV 138 (379)
T ss_dssp CCTTSHHHHHHHHHHHH
T ss_pred eccCChHHHHHHHHHHH
Confidence 58899999999999987
No 3
>1f0c_A ICE inhibitor; apoptosis, caspase inhibitor, protease inhibitor, serpin, viral protein; 2.26A {Cowpox virus} SCOP: e.1.1.1 PDB: 1c8o_A
Probab=22.69 E-value=18 Score=26.13 Aligned_cols=18 Identities=22% Similarity=0.133 Sum_probs=15.0
Q ss_pred ccccCChHHHhhccccchH
Q 034719 33 ESDDINPFEASSRINFWVE 51 (86)
Q Consensus 33 e~D~iNp~d~c~~lN~lv~ 51 (86)
+.|+.|| +..++||+||-
T Consensus 87 ~vdF~~~-~a~~~IN~WV~ 104 (305)
T 1f0c_A 87 TVDFTDC-RTVDAINKCVD 104 (305)
T ss_dssp EECSSST-HHHHHHHHHHH
T ss_pred ccCCCCH-HHHHHHHHHHH
Confidence 3588899 99999999974
No 4
>3ndd_A Alpha-1-antitrypsin; serpin, hydrolase inhibitor; 1.50A {Homo sapiens} PDB: 3ndf_A 7api_A* 8api_A* 9api_A* 1d5s_A 1ezx_A 3t1p_A 2d26_A 1qmb_A
Probab=21.93 E-value=20 Score=26.22 Aligned_cols=18 Identities=33% Similarity=0.237 Sum_probs=15.7
Q ss_pred cccCChHHHhhccccchH
Q 034719 34 SDDINPFEASSRINFWVE 51 (86)
Q Consensus 34 ~D~iNp~d~c~~lN~lv~ 51 (86)
.|+.||-+..++||+||-
T Consensus 130 vdF~~~~~a~~~IN~wV~ 147 (343)
T 3ndd_A 130 VNFGDTEEAKKQINDYVE 147 (343)
T ss_dssp ECTTSHHHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHHHHH
Confidence 588999999999999874
No 5
>3dy0_A N-terminus plasma serine protease inhibitor; serpin, blood clotting, hydrolase inhibitor; HET: IDS SGN; 1.55A {Homo sapiens} PDB: 1lq8_A* 2hi9_A*
Probab=21.90 E-value=20 Score=26.18 Aligned_cols=18 Identities=22% Similarity=0.182 Sum_probs=15.8
Q ss_pred cccCChHHHhhccccchH
Q 034719 34 SDDINPFEASSRINFWVE 51 (86)
Q Consensus 34 ~D~iNp~d~c~~lN~lv~ 51 (86)
.|+.||-+..++||+||-
T Consensus 124 vdF~~~~~a~~~IN~wV~ 141 (336)
T 3dy0_A 124 TNFRDSAGAMKQINDYVA 141 (336)
T ss_dssp CCTTSHHHHHHHHHHHHH
T ss_pred ECCCChHHHHHHHHHHHH
Confidence 588899999999999974
No 6
>3cjs_B 50S ribosomal protein L11, ribosomal protein L11 methyltransferase; S-adenosyl-L-methionine dependent methyltransferase; 1.37A {Thermus thermophilus} SCOP: d.47.1.1 PDB: 3cju_B* 2bcw_A
Probab=21.88 E-value=23 Score=21.19 Aligned_cols=13 Identities=23% Similarity=0.115 Sum_probs=11.2
Q ss_pred cCChHHHhhcccc
Q 034719 36 DINPFEASSRINF 48 (86)
Q Consensus 36 ~iNp~d~c~~lN~ 48 (86)
=+|+.|.|+.+|.
T Consensus 31 Gvni~~f~k~fN~ 43 (72)
T 3cjs_B 31 GANIMEFVKAFNA 43 (72)
T ss_dssp TCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 4799999999984
No 7
>4au2_A HSP47, serpin peptidase inhibitor, clade H (heat shock P 47), member 1, (collagen binding...; chaperone-peptide complex; 2.30A {Canis lupus familiaris} PDB: 4au3_A 4au4_A 4awr_A 4au3_B
Probab=19.40 E-value=24 Score=26.29 Aligned_cols=17 Identities=24% Similarity=0.210 Sum_probs=15.3
Q ss_pred cccCChHHHhhccccch
Q 034719 34 SDDINPFEASSRINFWV 50 (86)
Q Consensus 34 ~D~iNp~d~c~~lN~lv 50 (86)
.|+.||-+..++||+||
T Consensus 127 vdF~~~~~a~~~IN~WV 143 (392)
T 4au2_A 127 INFRDKRSALQSINEWA 143 (392)
T ss_dssp ECTTSHHHHHHHHHHHH
T ss_pred ecCCChHHHHHHHHHHH
Confidence 58899999999999997
No 8
>3bqp_A Proactivator polypeptide; saposin, sphingolipid activator protein, lipid binding protein, acid ceramidase,farber disease, lipid metabolism; 1.30A {Homo sapiens} PDB: 3bqq_C 2rb3_A 2r1q_A 2r0r_A
Probab=18.30 E-value=1.2e+02 Score=16.69 Aligned_cols=26 Identities=15% Similarity=0.125 Sum_probs=18.4
Q ss_pred HHHHHHHHHhhhccccCChHHHhhccc
Q 034719 21 STFYQLLCLLDLESDDINPFEASSRIN 47 (86)
Q Consensus 21 ~~vy~li~l~DLe~D~iNp~d~c~~lN 47 (86)
..-|.=..++.|+. ..+|-+.|+++.
T Consensus 51 v~~y~~~ii~~l~~-~~~P~~iC~~l~ 76 (80)
T 3bqp_A 51 VAEYEPVLIEILVE-VMDPSFVCLKIG 76 (80)
T ss_dssp HHHHHHHHHHHHTT-CCCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHH-CCCHHHHHhhcC
Confidence 34455566777774 579999999874
No 9
>1n0x_P B2.1 peptide, immunoglobulin heavy chain; antibody-peptide complex, peptide dimer, immune system; HET: CXS; 1.80A {Homo sapiens}
Probab=18.10 E-value=13 Score=18.20 Aligned_cols=11 Identities=36% Similarity=0.377 Sum_probs=7.8
Q ss_pred HHhhhccccCC
Q 034719 28 CLLDLESDDIN 38 (86)
Q Consensus 28 ~l~DLe~D~iN 38 (86)
++||||.+.+.
T Consensus 6 mfsdlenrcia 16 (26)
T 1n0x_P 6 MFSDLENRCIA 16 (26)
T ss_dssp EEETTTTEEEE
T ss_pred hhhHHHHHHHH
Confidence 47899877653
No 10
>3f02_A Neuroserpin; cleaved form, fenib, human, disease MUT glycoprotein, protease inhibitor, secreted, serine protease inhibitor, hydrolase inhibitor; 1.80A {Homo sapiens} PDB: 3fgq_A 1jjo_C 1jjo_A
Probab=17.97 E-value=28 Score=25.73 Aligned_cols=18 Identities=33% Similarity=0.433 Sum_probs=15.5
Q ss_pred cccCChHHHhhccccchH
Q 034719 34 SDDINPFEASSRINFWVE 51 (86)
Q Consensus 34 ~D~iNp~d~c~~lN~lv~ 51 (86)
.|+.||-+..++||+||-
T Consensus 136 vdF~~~~~a~~~IN~WV~ 153 (359)
T 3f02_A 136 VDFSQNVAVANYINKWVE 153 (359)
T ss_dssp ECTTSHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHH
Confidence 578899999999999873
Done!