BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>034721
MAVAIRGGRGGTAVGPGLRSLFSYRIFVSAMFSLLFLATLSVILTSHPSTSHHDPVSPPP
LHSFFHLSEMPFINYFYEKLLSIIAN

High Scoring Gene Products

Symbol, full name Information P value
GAUT9
galacturonosyltransferase 9 		protein from Arabidopsis thaliana 1.2e-05

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  034721
        (86 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2074572 - symbol:GAUT9 "galacturonosyltransfer...   112  1.2e-05   1


>TAIR|locus:2074572 [details] [associations]
            symbol:GAUT9 "galacturonosyltransferase 9" species:3702
            "Arabidopsis thaliana" [GO:0005794 "Golgi apparatus"
            evidence=ISM;IDA] [GO:0016051 "carbohydrate biosynthetic process"
            evidence=ISS] [GO:0016757 "transferase activity, transferring
            glycosyl groups" evidence=IEA;ISS] [GO:0016758 "transferase
            activity, transferring hexosyl groups" evidence=ISS] [GO:0047262
            "polygalacturonate 4-alpha-galacturonosyltransferase activity"
            evidence=ISS] [GO:0005768 "endosome" evidence=IDA] [GO:0005802
            "trans-Golgi network" evidence=IDA] InterPro:IPR002495 Pfam:PF01501
            UniPathway:UPA00845 GO:GO:0016021 GO:GO:0005794 EMBL:CP002686
            GenomeReviews:BA000014_GR GO:GO:0000139 GO:GO:0005768 EMBL:AC068900
            GO:GO:0005802 CAZy:GT8 GO:GO:0047262 GO:GO:0045489
            HOGENOM:HOG000239479 KO:K13648 ProtClustDB:PLN02523 EMBL:AY078957
            EMBL:BT004530 EMBL:AY084528 IPI:IPI00523537 RefSeq:NP_566170.1
            UniGene:At.22311 ProteinModelPortal:Q9FWA4 STRING:Q9FWA4
            PaxDb:Q9FWA4 PRIDE:Q9FWA4 EnsemblPlants:AT3G02350.1 GeneID:820474
            KEGG:ath:AT3G02350 TAIR:At3g02350 eggNOG:NOG268416
            InParanoid:Q9FWA4 OMA:GNAYMQR PhylomeDB:Q9FWA4
            Genevestigator:Q9FWA4 GermOnline:AT3G02350 Uniprot:Q9FWA4
        Length = 561

 Score = 112 (44.5 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 23/39 (58%), Positives = 26/39 (66%)

Query:    20 SLFSYRIFVSAMFSLLFLATLSVILTSHPSTSHHDPVSP 58
             S FSYRIF+SA+FS LFLAT SV+L S     H D   P
Sbjct:    22 SFFSYRIFISALFSFLFLATFSVVLNSSRHQPHQDHTLP 60


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.330   0.138   0.412    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       86        72   0.00091  102 3  11 22  0.37    28
                                                     29  0.43    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  389 (42 KB)
  Total size of DFA:  75 KB (2065 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.56u 0.20s 10.76t   Elapsed:  00:00:01
  Total cpu time:  10.56u 0.20s 10.76t   Elapsed:  00:00:01
  Start:  Mon May 20 17:47:41 2013   End:  Mon May 20 17:47:42 2013

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