Query 034721
Match_columns 86
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 29240
Date Mon Mar 25 09:10:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034721.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034721hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3djb_A Hydrolase, HD family; a 64.8 4.1 0.00014 27.8 2.4 35 49-83 143-180 (223)
2 3dto_A BH2835 protein; all alp 63.3 3.7 0.00013 28.2 2.0 35 49-83 143-180 (223)
3 2lja_A Putative thiol-disulfid 48.1 14 0.00048 20.6 2.5 18 37-54 135-152 (152)
4 2knc_A Integrin alpha-IIB; tra 45.1 32 0.0011 20.3 3.8 30 16-45 5-34 (54)
5 2l8s_A Integrin alpha-1; trans 40.6 35 0.0012 20.3 3.5 23 23-45 9-31 (54)
6 3gw7_A Uncharacterized protein 37.4 5.7 0.00019 27.6 -0.5 13 71-83 169-181 (239)
7 2pjq_A Uncharacterized protein 37.0 13 0.00045 24.8 1.3 15 69-83 172-186 (231)
8 2k1a_A Integrin alpha-IIB; sin 36.6 48 0.0016 18.5 3.5 23 22-44 9-31 (42)
9 3u5c_X RP37, S28, YS14, 40S ri 27.6 27 0.00091 24.5 1.6 17 3-19 102-121 (145)
10 3j20_N 30S ribosomal protein S 24.5 32 0.0011 24.2 1.6 17 3-19 103-123 (147)
11 2qgs_A Protein Se1688; alpha-h 23.0 21 0.00073 23.6 0.4 14 70-83 168-181 (225)
No 1
>3djb_A Hydrolase, HD family; all alpha-helical protein., structural genomics, PSI-2, protein structure initiative; 2.90A {Bacillus thuringiensis serovarkonkukian} SCOP: a.211.1.1
Probab=64.83 E-value=4.1 Score=27.83 Aligned_cols=35 Identities=34% Similarity=0.525 Sum_probs=19.8
Q ss_pred CCCCCCCCCCCCcccc---cccCCcchHHHHHHHHHhh
Q 034721 49 STSHHDPVSPPPLHSF---FHLSEMPFINYFYEKLLSI 83 (86)
Q Consensus 49 stshhdpvsppplhsf---fhlsempfinyfyekllsi 83 (86)
....+||..||-.+.- +.-..-.-||.|||||+.+
T Consensus 143 ~~~l~~~~~~~~~~~~~~~y~~~~~~~i~Hf~eKLl~L 180 (223)
T 3djb_A 143 GRLMYDPTIPPREVMTKDEYRKNNDPSLNHFYEKLLKL 180 (223)
T ss_dssp TCCSCCTTSCCC------------CCTTHHHHHHTGGG
T ss_pred CCcccCCcccccccccHHHHhccchhHHHHHHHHHHhH
Confidence 3456888887744321 1112235699999999875
No 2
>3dto_A BH2835 protein; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Bacillus halodurans} SCOP: a.211.1.1
Probab=63.32 E-value=3.7 Score=28.16 Aligned_cols=35 Identities=29% Similarity=0.335 Sum_probs=21.6
Q ss_pred CCCCCCCCCCCCccccc---ccCCcchHHHHHHHHHhh
Q 034721 49 STSHHDPVSPPPLHSFF---HLSEMPFINYFYEKLLSI 83 (86)
Q Consensus 49 stshhdpvsppplhsff---hlsempfinyfyekllsi 83 (86)
....+||..||-.+.-+ .-..-.-||.|||||+.+
T Consensus 143 ~~~~~~p~~~~~~~~~~~~yr~~~~~~i~Hf~eKLl~l 180 (223)
T 3dto_A 143 GQPIYDPELPIRETMTVEEYRHGKSTAINHFYEKLFKL 180 (223)
T ss_dssp TCCSCCTTSCCCCC--SHHHHTCCCCHHHHHHHTGGGC
T ss_pred CCcccCccccccccccHHHhhccchhHHHHHHHHHHHH
Confidence 44568888877543211 112235799999999864
No 3
>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}
Probab=48.10 E-value=14 Score=20.60 Aligned_cols=18 Identities=17% Similarity=0.261 Sum_probs=14.1
Q ss_pred HHHHHHHhccCCCCCCCC
Q 034721 37 LATLSVILTSHPSTSHHD 54 (86)
Q Consensus 37 latlsviltshpstshhd 54 (86)
...|.-++.+|+++|||.
T Consensus 135 ~~~l~~~~~~~~~~~~~~ 152 (152)
T 2lja_A 135 AEKFNELLGLEGHHHHHH 152 (152)
T ss_dssp HHHHHHHHTCCSSSSSCC
T ss_pred HHHHHHHhccccccccCC
Confidence 355667889999999983
No 4
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=45.12 E-value=32 Score=20.28 Aligned_cols=30 Identities=20% Similarity=0.297 Sum_probs=23.0
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHhc
Q 034721 16 PGLRSLFSYRIFVSAMFSLLFLATLSVILT 45 (86)
Q Consensus 16 pglrslfsyrifvsamfsllflatlsvilt 45 (86)
+.-.+.--+.|.+|..-.++.|+.+..+|-
T Consensus 5 ~~~~~vp~wiIi~svl~GLllL~li~~~Lw 34 (54)
T 2knc_A 5 SEERAIPIWWVLVGVLGGLLLLTILVLAMW 34 (54)
T ss_dssp CTTTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 333455567899999999999998888774
No 5
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=40.57 E-value=35 Score=20.31 Aligned_cols=23 Identities=35% Similarity=0.404 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 034721 23 SYRIFVSAMFSLLFLATLSVILT 45 (86)
Q Consensus 23 syrifvsamfsllflatlsvilt 45 (86)
-+.|.+|+.-.++.|+.+..+|-
T Consensus 9 ~WiIi~svl~GLLLL~Lii~~Lw 31 (54)
T 2l8s_A 9 LWVILLSAFAGLLLLMLLILALW 31 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999998888773
No 6
>3gw7_A Uncharacterized protein YEDJ; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Escherichia coli k-12}
Probab=37.40 E-value=5.7 Score=27.63 Aligned_cols=13 Identities=31% Similarity=0.429 Sum_probs=11.0
Q ss_pred chHHHHHHHHHhh
Q 034721 71 PFINYFYEKLLSI 83 (86)
Q Consensus 71 pfinyfyekllsi 83 (86)
.-||.|||||+.+
T Consensus 169 ~~i~Hf~eKLl~L 181 (239)
T 3gw7_A 169 YALDHFQTKLLKL 181 (239)
T ss_dssp CHHHHHTTTGGGT
T ss_pred hHHHHHHHHHHhh
Confidence 4799999999865
No 7
>2pjq_A Uncharacterized protein LP_2664; LPR71, NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactobacillus plantarum WCFS1} SCOP: a.211.1.1
Probab=37.00 E-value=13 Score=24.77 Aligned_cols=15 Identities=47% Similarity=0.664 Sum_probs=11.7
Q ss_pred CcchHHHHHHHHHhh
Q 034721 69 EMPFINYFYEKLLSI 83 (86)
Q Consensus 69 empfinyfyekllsi 83 (86)
.-..||.|||||+.+
T Consensus 172 ~~~~i~hf~ekll~l 186 (231)
T 2pjq_A 172 PGTAINHFYEKLFKL 186 (231)
T ss_dssp CCCTTHHHHHTGGGH
T ss_pred cchHHHHHHHHHHHH
Confidence 346799999999864
No 8
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=36.64 E-value=48 Score=18.53 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 034721 22 FSYRIFVSAMFSLLFLATLSVIL 44 (86)
Q Consensus 22 fsyrifvsamfsllflatlsvil 44 (86)
--+.|.+|+.-.++.|+.+..+|
T Consensus 9 p~wiIi~s~l~GLllL~li~~~L 31 (42)
T 2k1a_A 9 PIWWVLVGVLGGLLLLTILVLAM 31 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHH
Confidence 34678899999999999888776
No 9
>3u5c_X RP37, S28, YS14, 40S ribosomal protein S23-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_L 3o30_P 3o2z_P 3u5g_X 3j2k_X 3jyv_L* 1s1h_L* 2zkq_l 3iz6_L
Probab=27.64 E-value=27 Score=24.53 Aligned_cols=17 Identities=59% Similarity=1.095 Sum_probs=12.3
Q ss_pred eeeec-CCCCcccC--cchh
Q 034721 3 VAIRG-GRGGTAVG--PGLR 19 (86)
Q Consensus 3 vairg-grggtavg--pglr 19 (86)
|-||| ||-|.+|| ||.|
T Consensus 102 VLV~G~G~~Gg~v~DlPGVr 121 (145)
T 3u5c_X 102 VLLAGFGRKGKAKGDIPGVR 121 (145)
T ss_dssp EEEECCSSSSSCCSSSTTCC
T ss_pred EEEEeccccCCccCCCCcee
Confidence 67887 77676776 6766
No 10
>3j20_N 30S ribosomal protein S12P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=24.52 E-value=32 Score=24.19 Aligned_cols=17 Identities=53% Similarity=1.072 Sum_probs=11.5
Q ss_pred eeeec--CCCCcccC--cchh
Q 034721 3 VAIRG--GRGGTAVG--PGLR 19 (86)
Q Consensus 3 vairg--grggtavg--pglr 19 (86)
|-||| ||-|.+|| ||.|
T Consensus 103 VLV~G~gg~~gg~v~DlPGVr 123 (147)
T 3j20_N 103 VIIEGIGGPKGGSMGDIPGIR 123 (147)
T ss_dssp EEEEECSCTTSCCCSSCSSCC
T ss_pred EEEeeccCcCCCccCCCCcee
Confidence 67888 45566665 6766
No 11
>2qgs_A Protein Se1688; alpha-helical protein, structural genomics, PSI-2, protein S initiative, northeast structural genomics consortium; 2.00A {Staphylococcus epidermidis} SCOP: a.211.1.1
Probab=23.01 E-value=21 Score=23.56 Aligned_cols=14 Identities=43% Similarity=0.691 Sum_probs=11.4
Q ss_pred cchHHHHHHHHHhh
Q 034721 70 MPFINYFYEKLLSI 83 (86)
Q Consensus 70 mpfinyfyekllsi 83 (86)
-..||.|||||+.+
T Consensus 168 ~~~i~hf~ekll~l 181 (225)
T 2qgs_A 168 NSAIKHFYEKLFKL 181 (225)
T ss_dssp CCHHHHHHHTGGGS
T ss_pred chHHHHHHHHHHHH
Confidence 46899999999853
Done!