Query 034721
Match_columns 86
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Mon Mar 25 09:11:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034721.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034721hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3djba1 a.211.1.1 (A:2-214) Un 72.0 1.2 9E-05 28.7 2.7 35 49-83 142-179 (213)
2 d2pjqa1 a.211.1.1 (A:1-215) Un 45.3 2.6 0.00019 26.8 0.5 34 50-83 145-181 (215)
3 d2qgsa1 a.211.1.1 (A:1-216) Un 45.3 2.5 0.00019 27.0 0.4 34 50-83 145-181 (216)
4 d1v54a_ f.24.1.1 (A:) Mitochon 25.2 50 0.0036 24.1 4.8 16 56-74 497-512 (514)
5 d2pq7a1 a.211.1.1 (A:1-217) Pr 25.2 7.1 0.00052 24.4 0.0 14 71-84 172-185 (217)
6 d1j58a_ b.82.1.2 (A:) Oxalate 21.7 11 0.0008 26.0 0.5 13 5-17 4-16 (372)
7 d3dtoa1 a.211.1.1 (A:2-213) Un 19.5 13 0.00094 23.0 0.4 14 70-83 166-179 (212)
8 d3b57a1 a.211.1.1 (A:1-201) Un 15.5 51 0.0037 19.7 2.6 14 70-83 155-168 (201)
9 d1g3qa_ c.37.1.10 (A:) Cell di 13.8 40 0.0029 18.7 1.6 11 3-13 5-15 (237)
10 d1koha2 d.58.7.2 (A:105-200) m 12.9 30 0.0022 20.7 0.9 10 6-15 1-10 (96)
No 1
>d3djba1 a.211.1.1 (A:2-214) Uncharacterized protein BT9727_1981 {Bacillus thuringiensis [TaxId: 1428]}
Probab=71.97 E-value=1.2 Score=28.68 Aligned_cols=35 Identities=34% Similarity=0.446 Sum_probs=21.1
Q ss_pred CCCCCCCCCCCCccccc---ccCCcchHHHHHHHHHhh
Q 034721 49 STSHHDPVSPPPLHSFF---HLSEMPFINYFYEKLLSI 83 (86)
Q Consensus 49 stshhdpvsppplhsff---hlsempfinyfyekllsi 83 (86)
....+||-.||-.+.-. --..-+.||.|||||+.+
T Consensus 142 ~~~~~~p~~~~~~~~~~~~~~~~~~~~i~Hf~eKLl~l 179 (213)
T d3djba1 142 GRLMYDPTIPPREVMTKDEYRKNNDPSLNHFYEKLLKL 179 (213)
T ss_dssp TCCSCCTTSCCC------------CCTTHHHHHHTGGG
T ss_pred CCcccCccccccccccHHHhhcccchHHHHHHHHHHHH
Confidence 56678998887655322 223355799999999875
No 2
>d2pjqa1 a.211.1.1 (A:1-215) Uncharacterized protein LP2664 {Lactobacillus plantarum [TaxId: 1590]}
Probab=45.30 E-value=2.6 Score=26.80 Aligned_cols=34 Identities=32% Similarity=0.378 Sum_probs=19.2
Q ss_pred CCCCCCCCCCCccccc---ccCCcchHHHHHHHHHhh
Q 034721 50 TSHHDPVSPPPLHSFF---HLSEMPFINYFYEKLLSI 83 (86)
Q Consensus 50 tshhdpvsppplhsff---hlsempfinyfyekllsi 83 (86)
...+||-.+|--.... --..-..||.|||||+.+
T Consensus 145 ~~~~~p~~~~~~~~~~~~~~~~~~~~i~Hf~eKLl~l 181 (215)
T d2pjqa1 145 EKIYDPAIAPREHMTREQYRHQPGTAINHFYEKLFKL 181 (215)
T ss_dssp CCSCCTTSCCCSSCCHHHHHHSCCCTTHHHHHTGGGH
T ss_pred CcccCcccccccccchhhhhcCCccHHHHHHHHHHHH
Confidence 4456665554322111 112334789999999875
No 3
>d2qgsa1 a.211.1.1 (A:1-216) Uncharacterized protein SE1688 {Staphylococcus epidermidis [TaxId: 1282]}
Probab=45.25 E-value=2.5 Score=26.99 Aligned_cols=34 Identities=18% Similarity=0.153 Sum_probs=19.6
Q ss_pred CCCCCCCCCCCccccc---ccCCcchHHHHHHHHHhh
Q 034721 50 TSHHDPVSPPPLHSFF---HLSEMPFINYFYEKLLSI 83 (86)
Q Consensus 50 tshhdpvsppplhsff---hlsempfinyfyekllsi 83 (86)
...+||..+|...-.. --..-..||+|||||+.+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~hf~eKLl~l 181 (216)
T d2qgsa1 145 EPMWTETKLSNEELHTSLVEELDNSAIKHFYEKLFKL 181 (216)
T ss_dssp CCSCCCCCCCHHHHTSGGGGGSCCCHHHHHHHTGGGS
T ss_pred CcccCccccccccchhhhhccccccHHHHHHHHHHhh
Confidence 3456776655333211 112235799999999864
No 4
>d1v54a_ f.24.1.1 (A:) Mitochondrial cytochrome c oxidase, subunit I {Cow (Bos taurus) [TaxId: 9913]}
Probab=25.24 E-value=50 Score=24.10 Aligned_cols=16 Identities=44% Similarity=0.991 Sum_probs=12.2
Q ss_pred CCCCCcccccccCCcchHH
Q 034721 56 VSPPPLHSFFHLSEMPFIN 74 (86)
Q Consensus 56 vsppplhsffhlsempfin 74 (86)
-||||.|+| .|-|+++
T Consensus 497 ~sPpp~~nF---~~~p~v~ 512 (514)
T d1v54a_ 497 GCPPPYHTF---EEPTYVN 512 (514)
T ss_dssp CSSCCSSCC---SSCCEEC
T ss_pred CCCCCCCCC---CCCCccC
Confidence 489999998 5777653
No 5
>d2pq7a1 a.211.1.1 (A:1-217) Predicted hydrolase mes0020 {Uncultured thermotogales bacterium [TaxId: 221214]}
Probab=25.18 E-value=7.1 Score=24.43 Aligned_cols=14 Identities=50% Similarity=0.555 Sum_probs=0.0
Q ss_pred chHHHHHHHHHhhh
Q 034721 71 PFINYFYEKLLSII 84 (86)
Q Consensus 71 pfinyfyekllsii 84 (86)
.-||.|||||+.+.
T Consensus 172 ~~i~Hf~eKll~l~ 185 (217)
T d2pq7a1 172 SSINHFHEKILKIR 185 (217)
T ss_dssp --------------
T ss_pred hHHHHHHHHHHHhh
Confidence 45899999998764
No 6
>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]}
Probab=21.74 E-value=11 Score=26.00 Aligned_cols=13 Identities=46% Similarity=0.723 Sum_probs=11.6
Q ss_pred eecCCCCcccCcc
Q 034721 5 IRGGRGGTAVGPG 17 (86)
Q Consensus 5 irggrggtavgpg 17 (86)
||||+|++-.||-
T Consensus 4 ~~~~~g~~~~gp~ 16 (372)
T d1j58a_ 4 IRGDKGATVKIPR 16 (372)
T ss_dssp EETTEECCCCSCC
T ss_pred ccCCCCCCCCCCC
Confidence 8999999999984
No 7
>d3dtoa1 a.211.1.1 (A:2-213) Uncharacterized protein BH2835 {Bacillus halodurans [TaxId: 86665]}
Probab=19.52 E-value=13 Score=22.97 Aligned_cols=14 Identities=50% Similarity=0.774 Sum_probs=11.3
Q ss_pred cchHHHHHHHHHhh
Q 034721 70 MPFINYFYEKLLSI 83 (86)
Q Consensus 70 mpfinyfyekllsi 83 (86)
-..||.|||||+.+
T Consensus 166 ~~~i~hf~eKll~l 179 (212)
T d3dtoa1 166 STAINHFYEKLFKL 179 (212)
T ss_dssp CCHHHHHHHTGGGC
T ss_pred cHHHHHHHHHHHHH
Confidence 44699999999864
No 8
>d3b57a1 a.211.1.1 (A:1-201) Uncharacterized protein Lin1889 {Listeria innocua [TaxId: 1642]}
Probab=15.49 E-value=51 Score=19.68 Aligned_cols=14 Identities=43% Similarity=0.657 Sum_probs=11.3
Q ss_pred cchHHHHHHHHHhh
Q 034721 70 MPFINYFYEKLLSI 83 (86)
Q Consensus 70 mpfinyfyekllsi 83 (86)
...++.|+|||+.+
T Consensus 155 ~~~~~h~~~Kl~~l 168 (201)
T d3b57a1 155 NTTLQHFYDKLLLI 168 (201)
T ss_dssp SCHHHHHHHTHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 35699999999865
No 9
>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=13.81 E-value=40 Score=18.73 Aligned_cols=11 Identities=45% Similarity=0.972 Sum_probs=7.6
Q ss_pred eeeecCCCCcc
Q 034721 3 VAIRGGRGGTA 13 (86)
Q Consensus 3 vairggrggta 13 (86)
+|+-|++||++
T Consensus 5 Iav~~~kGGvG 15 (237)
T d1g3qa_ 5 ISIVSGKGGTG 15 (237)
T ss_dssp EEEECSSTTSS
T ss_pred EEEECCCCCCc
Confidence 67777777754
No 10
>d1koha2 d.58.7.2 (A:105-200) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.93 E-value=30 Score=20.65 Aligned_cols=10 Identities=50% Similarity=0.926 Sum_probs=7.7
Q ss_pred ecCCCCcccC
Q 034721 6 RGGRGGTAVG 15 (86)
Q Consensus 6 rggrggtavg 15 (86)
|||+|++..|
T Consensus 1 rgg~g~~~d~ 10 (96)
T d1koha2 1 RGGAGTSQDG 10 (96)
T ss_dssp CCSSCCSSSS
T ss_pred CCCcCcCCCC
Confidence 7888887765
Done!