BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034727
(86 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|359488729|ref|XP_002280233.2| PREDICTED: uncharacterized protein LOC100242330 [Vitis vinifera]
gi|296087711|emb|CBI34967.3| unnamed protein product [Vitis vinifera]
Length = 287
Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 51/88 (57%), Positives = 62/88 (70%), Gaps = 4/88 (4%)
Query: 1 MLRADDGS-LIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC- 58
+LRADDGS +I+ GVGI TNNVA+Y +LILG+KYAL+KG R RGDS+LV MQ
Sbjct: 168 VLRADDGSAVIHLREGVGIATNNVAEYRALILGMKYALKKGIKRIRARGDSQLVCMQFQG 227
Query: 59 CWLMEDQTPGMAELCGEAKRLKDKFLSI 86
W ++Q MA+LC EAK L KFLS
Sbjct: 228 LWKTKNQN--MADLCEEAKELGKKFLSF 253
>gi|255552696|ref|XP_002517391.1| nuclease, putative [Ricinus communis]
gi|223543402|gb|EEF44933.1| nuclease, putative [Ricinus communis]
Length = 255
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/87 (55%), Positives = 65/87 (74%), Gaps = 4/87 (4%)
Query: 1 MLRADDGSLI-YNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV-C 58
+LRA+DGS++ G+G TNNVA+Y ++ILGLK+AL+KGF + RVRGDS LV MQ+
Sbjct: 135 VLRAEDGSMVCLLREGLGTATNNVAEYRAVILGLKHALRKGFKHIRVRGDSNLVVMQIKG 194
Query: 59 CWLMEDQTPGMAELCGEAKRLKDKFLS 85
W ++ Q +A+LC EAK LK+KFLS
Sbjct: 195 LWKIKSQN--VADLCKEAKELKNKFLS 219
>gi|296086505|emb|CBI32094.3| unnamed protein product [Vitis vinifera]
Length = 445
Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 46/87 (52%), Positives = 65/87 (74%), Gaps = 2/87 (2%)
Query: 1 MLRADDGSLIYN-HNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC 59
+LR+D G +I G+G+ TNNVA+Y ++ILGLKYAL+KG+ + RV+GDSKLV MQV
Sbjct: 311 VLRSDSGRVICRVREGLGLATNNVAEYQAMILGLKYALKKGYTSIRVQGDSKLVCMQV-Q 369
Query: 60 WLMEDQTPGMAELCGEAKRLKDKFLSI 86
L + + M+ LC EAK+LK++FLS+
Sbjct: 370 GLWKARNKNMSILCKEAKKLKNEFLSV 396
>gi|359473412|ref|XP_002266599.2| PREDICTED: uncharacterized protein LOC100255243 [Vitis vinifera]
Length = 453
Score = 84.3 bits (207), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 46/87 (52%), Positives = 65/87 (74%), Gaps = 2/87 (2%)
Query: 1 MLRADDGSLIYN-HNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC 59
+LR+D G +I G+G+ TNNVA+Y ++ILGLKYAL+KG+ + RV+GDSKLV MQV
Sbjct: 140 VLRSDSGRVICRVREGLGLATNNVAEYQAMILGLKYALKKGYTSIRVQGDSKLVCMQV-Q 198
Query: 60 WLMEDQTPGMAELCGEAKRLKDKFLSI 86
L + + M+ LC EAK+LK++FLS+
Sbjct: 199 GLWKARNKNMSILCKEAKKLKNEFLSV 225
>gi|449452100|ref|XP_004143798.1| PREDICTED: uncharacterized protein LOC101210930 [Cucumis sativus]
Length = 373
Score = 84.3 bits (207), Expect = 9e-15, Method: Composition-based stats.
Identities = 47/86 (54%), Positives = 61/86 (70%), Gaps = 2/86 (2%)
Query: 1 MLRADDGSLIYN-HNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC 59
+LRA DGS+I G+GI TNNVA+Y +++LGLK AL+KGF V+GDSKLV MQV
Sbjct: 255 VLRAHDGSVICRLREGLGIATNNVAEYRAILLGLKSALKKGFTRIHVQGDSKLVCMQV-Q 313
Query: 60 WLMEDQTPGMAELCGEAKRLKDKFLS 85
L + + M+ELC E +LK+KFLS
Sbjct: 314 GLWKAKHENMSELCNEVTKLKNKFLS 339
>gi|365222890|gb|AEW69797.1| Hop-interacting protein THI034 [Solanum lycopersicum]
Length = 288
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/87 (52%), Positives = 62/87 (71%), Gaps = 4/87 (4%)
Query: 1 MLRADDGSLIYN-HNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC- 58
+LRA DGS+++ GVG+ TNNVA+Y +ILGL+YAL+KGF + +V+GDSKLV MQ
Sbjct: 167 VLRAADGSMVFRLREGVGVATNNVAEYRGVILGLRYALEKGFKHIKVKGDSKLVCMQTQG 226
Query: 59 CWLMEDQTPGMAELCGEAKRLKDKFLS 85
W ++Q MAEL K LKD+F+S
Sbjct: 227 IWKCKNQN--MAELSKIVKELKDQFMS 251
>gi|356565894|ref|XP_003551171.1| PREDICTED: uncharacterized protein LOC100809644 [Glycine max]
Length = 345
Score = 82.0 bits (201), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/87 (52%), Positives = 62/87 (71%), Gaps = 4/87 (4%)
Query: 1 MLRADDGSLIYN-HNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV-C 58
+LRA+DGSLI GVGI TNN A+Y ++ILG+KYAL+KGF R++GDSKLV MQ+
Sbjct: 227 ILRANDGSLICRLREGVGIATNNAAEYRAMILGMKYALKKGFTGIRIQGDSKLVCMQIDG 286
Query: 59 CWLMEDQTPGMAELCGEAKRLKDKFLS 85
W ++++ ++ L AK LKDKF S
Sbjct: 287 SWKVKNEN--LSTLYNVAKELKDKFSS 311
>gi|224108115|ref|XP_002314727.1| predicted protein [Populus trichocarpa]
gi|222863767|gb|EEF00898.1| predicted protein [Populus trichocarpa]
Length = 282
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 45/88 (51%), Positives = 62/88 (70%), Gaps = 4/88 (4%)
Query: 1 MLRADDGSLIYN-HNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC- 58
+LR DDGSLI G+GI TNN+A+Y +++LG+KYALQKG+ +V+GDSKLV MQ+
Sbjct: 164 VLRTDDGSLICRLREGLGIATNNMAEYRAILLGMKYALQKGYTKIQVKGDSKLVCMQIQG 223
Query: 59 CWLMEDQTPGMAELCGEAKRLKDKFLSI 86
W + + + LC EAK+LK+ FLS
Sbjct: 224 SW--KAKHVNITNLCTEAKKLKNSFLSF 249
>gi|356550140|ref|XP_003543447.1| PREDICTED: uncharacterized protein LOC100796237 [Glycine max]
Length = 283
Score = 81.6 bits (200), Expect = 6e-14, Method: Composition-based stats.
Identities = 47/82 (57%), Positives = 58/82 (70%), Gaps = 4/82 (4%)
Query: 6 DGSLIYN-HNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV-CCWLME 63
DGS +Y GVGI TNNVA+Y SLILGLK+AL+KG+ + V+GDS LV Q+ W ++
Sbjct: 168 DGSKVYRLREGVGIQTNNVAEYRSLILGLKHALKKGYKHIIVQGDSLLVCNQIQGLWKIK 227
Query: 64 DQTPGMAELCGEAKRLKDKFLS 85
+Q M LC EAK LKDKFLS
Sbjct: 228 NQN--MGTLCAEAKELKDKFLS 247
>gi|449459420|ref|XP_004147444.1| PREDICTED: uncharacterized protein LOC101219107 [Cucumis sativus]
gi|449517156|ref|XP_004165612.1| PREDICTED: uncharacterized LOC101219107 [Cucumis sativus]
Length = 255
Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/88 (53%), Positives = 62/88 (70%), Gaps = 4/88 (4%)
Query: 1 MLRADDGSLIYN-HNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC- 58
+LRA+DGS + GVGI T NVA+Y ++ILGLK+AL+ G + RV+GDSKLV MQV
Sbjct: 135 VLRANDGSTVCKLQEGVGIATCNVAEYRAVILGLKHALKNGIKHIRVQGDSKLVCMQVQG 194
Query: 59 CWLMEDQTPGMAELCGEAKRLKDKFLSI 86
W +++ P MA+ C AK LKDKF+S
Sbjct: 195 LWKLKN--PNMAKFCKVAKELKDKFVSF 220
>gi|224077608|ref|XP_002305325.1| predicted protein [Populus trichocarpa]
gi|222848289|gb|EEE85836.1| predicted protein [Populus trichocarpa]
Length = 257
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/88 (51%), Positives = 63/88 (71%), Gaps = 4/88 (4%)
Query: 1 MLRADDGSLIYN-HNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC- 58
+LRA+DGS++ G+GI TNNVA+Y +++LGLK+AL+KGF V+GDS LV MQ+
Sbjct: 137 VLRAEDGSMVCRLREGLGIATNNVAEYRAVLLGLKHALKKGFKYICVQGDSNLVCMQIQG 196
Query: 59 CWLMEDQTPGMAELCGEAKRLKDKFLSI 86
W +++Q +A+LC EAK LKD F S
Sbjct: 197 LWKLKNQN--LADLCKEAKELKDMFTSF 222
>gi|388490516|gb|AFK33324.1| unknown [Lotus japonicus]
Length = 167
Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/87 (50%), Positives = 58/87 (66%), Gaps = 3/87 (3%)
Query: 1 MLRADDGSLIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV-CC 59
+LRA+DGS +Y GVG TNN A+Y LILGLK+A ++G+ + V+GDS+LV QV
Sbjct: 48 VLRAEDGSKVYLREGVGNQTNNQAEYRGLILGLKHAHEQGYQHINVKGDSQLVCKQVEGS 107
Query: 60 WLMEDQTPGMAELCGEAKRLKDKFLSI 86
W + + P +A LC EAK LK KF S
Sbjct: 108 W--KARNPNIASLCNEAKELKSKFQSF 132
>gi|388511545|gb|AFK43834.1| unknown [Lotus japonicus]
Length = 170
Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/88 (51%), Positives = 59/88 (67%), Gaps = 4/88 (4%)
Query: 1 MLRADDGSLIYN-HNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV-C 58
+LRA DGS +Y GVGI TNN A+Y LILGLK+A+Q+G+ + V+GDS LV QV
Sbjct: 48 VLRAKDGSKVYRLREGVGIQTNNFAEYRGLILGLKHAIQEGYEHIDVKGDSMLVCNQVQG 107
Query: 59 CWLMEDQTPGMAELCGEAKRLKDKFLSI 86
W + +Q MA LC E K L+++FLS
Sbjct: 108 VWRINNQN--MAYLCNEVKELRNRFLSF 133
>gi|356526860|ref|XP_003532034.1| PREDICTED: uncharacterized protein LOC100779114 [Glycine max]
Length = 356
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/87 (51%), Positives = 60/87 (68%), Gaps = 4/87 (4%)
Query: 1 MLRADDGSLIYN-HNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV-C 58
+LRA+DGSLI GVGI TNN A+Y ++ILG+KYAL+KGF ++GDSKLV MQ+
Sbjct: 238 ILRANDGSLICRVREGVGIATNNAAEYRAMILGMKYALKKGFTGICIQGDSKLVCMQIDG 297
Query: 59 CWLMEDQTPGMAELCGEAKRLKDKFLS 85
W ++++ + L AK LKDKF S
Sbjct: 298 SWKVKNEN--LFTLYNVAKELKDKFSS 322
>gi|194699332|gb|ACF83750.1| unknown [Zea mays]
Length = 292
Score = 76.3 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 42/87 (48%), Positives = 57/87 (65%), Gaps = 4/87 (4%)
Query: 1 MLRADDGSLIYN-HNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV-C 58
+L +DG +I G+G+ TNNVA+Y LILGLKYA++ GF +V GDS+LV QV
Sbjct: 172 VLMTEDGRVISRLREGLGVATNNVAEYRGLILGLKYAIRHGFKRIKVHGDSQLVCNQVNG 231
Query: 59 CWLMEDQTPGMAELCGEAKRLKDKFLS 85
W + + P M ELC EA++LK+ F S
Sbjct: 232 VW--QTKQPNMMELCTEARKLKENFHS 256
>gi|224102015|ref|XP_002312512.1| predicted protein [Populus trichocarpa]
gi|222852332|gb|EEE89879.1| predicted protein [Populus trichocarpa]
Length = 317
Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/88 (48%), Positives = 59/88 (67%), Gaps = 4/88 (4%)
Query: 1 MLRADDGSLIYN-HNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV-C 58
+LR DDGSLI G+GI TNN+A+Y +++LG+KYAL+KG+ V+GDSKLV MQ+
Sbjct: 199 VLRNDDGSLICRLREGLGIATNNMAEYRAILLGMKYALEKGYTKIHVKGDSKLVCMQIEG 258
Query: 59 CWLMEDQTPGMAELCGEAKRLKDKFLSI 86
W + + L EAK+LK+ FLS
Sbjct: 259 SWKARHEN--ITNLYEEAKKLKNSFLSF 284
>gi|414871215|tpg|DAA49772.1| TPA: putative rnase H family protein [Zea mays]
Length = 143
Score = 74.7 bits (182), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 57/87 (65%), Gaps = 4/87 (4%)
Query: 1 MLRADDGSLIYN-HNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV-C 58
+L +DG +I G+G+ TNNVA+Y LILGLKYA++ GF +V GDS+LV QV
Sbjct: 23 VLMTEDGRVISRLREGLGVATNNVAEYRGLILGLKYAIRHGFKRIKVHGDSQLVCNQVNG 82
Query: 59 CWLMEDQTPGMAELCGEAKRLKDKFLS 85
W + + P M ELC EA++LK+ F S
Sbjct: 83 VW--QTKQPNMMELCTEARKLKENFHS 107
>gi|212275993|ref|NP_001130760.1| uncharacterized protein LOC100191864 [Zea mays]
gi|194690044|gb|ACF79106.1| unknown [Zea mays]
Length = 292
Score = 74.7 bits (182), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 57/87 (65%), Gaps = 4/87 (4%)
Query: 1 MLRADDGSLIYN-HNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV-C 58
+L +DG +I G+G+ TNNVA+Y LILGLKYA++ GF +V GDS+LV QV
Sbjct: 172 VLMTEDGRVISRLREGLGVATNNVAEYRGLILGLKYAIRHGFKRIKVHGDSQLVCNQVNG 231
Query: 59 CWLMEDQTPGMAELCGEAKRLKDKFLS 85
W + + P M ELC EA++LK+ F S
Sbjct: 232 VW--QTKQPNMMELCTEARKLKENFHS 256
>gi|334182806|ref|NP_173819.2| RNase H domain-containing protein [Arabidopsis thaliana]
gi|332192355|gb|AEE30476.1| RNase H domain-containing protein [Arabidopsis thaliana]
Length = 353
Score = 74.7 bits (182), Expect = 7e-12, Method: Composition-based stats.
Identities = 43/87 (49%), Positives = 61/87 (70%), Gaps = 4/87 (4%)
Query: 1 MLRADDGSLIYN-HNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV-C 58
+L+ +DGSLI G+GI TNN A+Y +LILGLKYA++KG+ N +V+GDSKLV MQ+
Sbjct: 237 VLKTEDGSLICRVRQGLGIATNNAAEYHALILGLKYAIEKGYKNIKVKGDSKLVCMQIKG 296
Query: 59 CWLMEDQTPGMAELCGEAKRLKDKFLS 85
W + + +A+L EAK L +K +S
Sbjct: 297 QWKVNHEV--LAKLHKEAKLLCNKCVS 321
>gi|34146846|gb|AAQ62431.1| At3g01410 [Arabidopsis thaliana]
gi|51970934|dbj|BAD44159.1| putative RNase H [Arabidopsis thaliana]
Length = 294
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/85 (54%), Positives = 54/85 (63%), Gaps = 4/85 (4%)
Query: 1 MLRADDGS-LIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV-C 58
+LRA D S L Y GVG TNNVA+Y +L+LGL+ AL KGF N V GDS LV MQV
Sbjct: 175 VLRASDNSVLFYLREGVGNATNNVAEYRALLLGLRSALDKGFKNVHVLGDSMLVCMQVQG 234
Query: 59 CWLMEDQTPGMAELCGEAKRLKDKF 83
W + P MAELC +AK L + F
Sbjct: 235 AW--KTNHPKMAELCKQAKELMNSF 257
>gi|30678332|ref|NP_186790.2| RNase H domain-containing protein [Arabidopsis thaliana]
gi|145331720|ref|NP_001078087.1| RNase H domain-containing protein [Arabidopsis thaliana]
gi|332640141|gb|AEE73662.1| RNase H domain-containing protein [Arabidopsis thaliana]
gi|332640142|gb|AEE73663.1| RNase H domain-containing protein [Arabidopsis thaliana]
Length = 294
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/85 (54%), Positives = 54/85 (63%), Gaps = 4/85 (4%)
Query: 1 MLRADDGS-LIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV-C 58
+LRA D S L Y GVG TNNVA+Y +L+LGL+ AL KGF N V GDS LV MQV
Sbjct: 175 VLRASDNSVLFYLREGVGNATNNVAEYRALLLGLRSALDKGFKNVHVLGDSMLVCMQVQG 234
Query: 59 CWLMEDQTPGMAELCGEAKRLKDKF 83
W + P MAELC +AK L + F
Sbjct: 235 AW--KTNHPKMAELCKQAKELMNSF 257
>gi|6692261|gb|AAF24611.1|AC010870_4 putative RNase H [Arabidopsis thaliana]
Length = 290
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/85 (54%), Positives = 54/85 (63%), Gaps = 4/85 (4%)
Query: 1 MLRADDGS-LIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV-C 58
+LRA D S L Y GVG TNNVA+Y +L+LGL+ AL KGF N V GDS LV MQV
Sbjct: 171 VLRASDNSVLFYLREGVGNATNNVAEYRALLLGLRSALDKGFKNVHVLGDSMLVCMQVQG 230
Query: 59 CWLMEDQTPGMAELCGEAKRLKDKF 83
W + P MAELC +AK L + F
Sbjct: 231 AW--KTNHPKMAELCKQAKELMNSF 253
>gi|357144247|ref|XP_003573224.1| PREDICTED: uncharacterized protein LOC100841248 [Brachypodium
distachyon]
Length = 352
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/88 (47%), Positives = 59/88 (67%), Gaps = 4/88 (4%)
Query: 1 MLRADDGSLIYN-HNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC- 58
++R DGS+I + G+GI TNN A+Y +L+LGL+YA +KGF R +GDSKLV QV
Sbjct: 231 VVRRPDGSVIAHLREGLGIATNNAAEYRALLLGLRYAAKKGFKYIRAQGDSKLVCYQVQD 290
Query: 59 CWLMEDQTPGMAELCGEAKRLKDKFLSI 86
W +++ MA+LC + K LK +FLS
Sbjct: 291 LWRVKNDN--MADLCKKVKELKGQFLSF 316
>gi|255588182|ref|XP_002534525.1| nuclease, putative [Ricinus communis]
gi|223525106|gb|EEF27855.1| nuclease, putative [Ricinus communis]
Length = 262
Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/88 (48%), Positives = 58/88 (65%), Gaps = 4/88 (4%)
Query: 1 MLRADDGSLIYN-HNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC- 58
+LR DG +I G+G TNNVA+Y ++ILG+KYAL+KG+ RV+GDSKLV QV
Sbjct: 141 LLRTTDGRIICRLREGLGQVTNNVAEYRAMILGMKYALKKGYTKIRVQGDSKLVCSQVQG 200
Query: 59 CWLMEDQTPGMAELCGEAKRLKDKFLSI 86
W ++ + M L +AK+LKDKF S
Sbjct: 201 LWKVKHKD--MTNLYEQAKQLKDKFASF 226
>gi|9369399|gb|AAF87147.1|AC002423_12 T23E23.24 [Arabidopsis thaliana]
Length = 360
Score = 72.0 bits (175), Expect = 4e-11, Method: Composition-based stats.
Identities = 35/58 (60%), Positives = 46/58 (79%), Gaps = 1/58 (1%)
Query: 1 MLRADDGSLIYN-HNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
+L+ +DGSLI G+GI TNN A+Y +LILGLKYA++KG+ N +V+GDSKLV MQV
Sbjct: 228 VLKTEDGSLICRVRQGLGIATNNAAEYHALILGLKYAIEKGYKNIKVKGDSKLVCMQV 285
>gi|30695999|ref|NP_199921.2| RNase H domain-containing protein [Arabidopsis thaliana]
gi|79330542|ref|NP_001032053.1| RNase H domain-containing protein [Arabidopsis thaliana]
gi|29028872|gb|AAO64815.1| At5g51080 [Arabidopsis thaliana]
gi|110743039|dbj|BAE99412.1| hypothetical protein [Arabidopsis thaliana]
gi|222424417|dbj|BAH20164.1| AT5G51080 [Arabidopsis thaliana]
gi|332008647|gb|AED96030.1| RNase H domain-containing protein [Arabidopsis thaliana]
gi|332008648|gb|AED96031.1| RNase H domain-containing protein [Arabidopsis thaliana]
Length = 322
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 60/87 (68%), Gaps = 4/87 (4%)
Query: 1 MLRADDGSLIYN-HNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC- 58
+L+ +DGSLI+ G+GI TNN A+Y LILGLK+A++KG+ +V+ DSKLV MQ+
Sbjct: 206 VLKTEDGSLIFKMRQGLGIATNNAAEYHGLILGLKHAIEKGYTKIKVKTDSKLVCMQMKG 265
Query: 59 CWLMEDQTPGMAELCGEAKRLKDKFLS 85
W + + +++L EAK+L DK LS
Sbjct: 266 QWKVNHEV--LSKLHKEAKQLSDKCLS 290
>gi|79330550|ref|NP_001032054.1| RNase H domain-containing protein [Arabidopsis thaliana]
gi|222424272|dbj|BAH20093.1| AT5G51080 [Arabidopsis thaliana]
gi|332008649|gb|AED96032.1| RNase H domain-containing protein [Arabidopsis thaliana]
Length = 259
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 60/87 (68%), Gaps = 4/87 (4%)
Query: 1 MLRADDGSLIYN-HNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV-C 58
+L+ +DGSLI+ G+GI TNN A+Y LILGLK+A++KG+ +V+ DSKLV MQ+
Sbjct: 143 VLKTEDGSLIFKMRQGLGIATNNAAEYHGLILGLKHAIEKGYTKIKVKTDSKLVCMQMKG 202
Query: 59 CWLMEDQTPGMAELCGEAKRLKDKFLS 85
W + + +++L EAK+L DK LS
Sbjct: 203 QWKVNHEV--LSKLHKEAKQLSDKCLS 227
>gi|8843844|dbj|BAA97370.1| unnamed protein product [Arabidopsis thaliana]
Length = 316
Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 60/87 (68%), Gaps = 4/87 (4%)
Query: 1 MLRADDGSLIYN-HNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV-C 58
+L+ +DGSLI+ G+GI TNN A+Y LILGLK+A++KG+ +V+ DSKLV MQ+
Sbjct: 206 VLKTEDGSLIFKMRQGLGIATNNAAEYHGLILGLKHAIEKGYTKIKVKTDSKLVCMQMKG 265
Query: 59 CWLMEDQTPGMAELCGEAKRLKDKFLS 85
W + + +++L EAK+L DK LS
Sbjct: 266 QWKVNHEV--LSKLHKEAKQLSDKCLS 290
>gi|357123204|ref|XP_003563302.1| PREDICTED: uncharacterized protein LOC100831320 [Brachypodium
distachyon]
Length = 349
Score = 70.9 bits (172), Expect = 8e-11, Method: Composition-based stats.
Identities = 41/86 (47%), Positives = 54/86 (62%), Gaps = 4/86 (4%)
Query: 1 MLRADDGSLIYN-HNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV-C 58
++R DGS+I G+GI TNN A+Y +L+LGL+YA KGF R +GDSKLV QV
Sbjct: 228 VVRRPDGSVIAQLREGLGIATNNAAEYRALLLGLRYAANKGFKYIRAQGDSKLVCNQVQN 287
Query: 59 CWLMEDQTPGMAELCGEAKRLKDKFL 84
W + MA+LC + K LK +FL
Sbjct: 288 VWRARNDN--MADLCKKVKELKGRFL 311
>gi|357146485|ref|XP_003574009.1| PREDICTED: uncharacterized protein LOC100824410 isoform 3
[Brachypodium distachyon]
Length = 280
Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats.
Identities = 39/87 (44%), Positives = 56/87 (64%), Gaps = 4/87 (4%)
Query: 1 MLRADDGSLIYN-HNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV-C 58
+L +DG +I G+G+ TNNVA+Y LILGLKYA++ GF +V GDS+LV QV
Sbjct: 159 VLMTEDGRVISRLREGLGVATNNVAEYRGLILGLKYAIKHGFKRIKVYGDSQLVCYQVKG 218
Query: 59 CWLMEDQTPGMAELCGEAKRLKDKFLS 85
W + + M ELC E ++L++ F+S
Sbjct: 219 TW--QAKKENMMELCKEVRKLQENFIS 243
>gi|357146480|ref|XP_003574007.1| PREDICTED: uncharacterized protein LOC100824410 isoform 1
[Brachypodium distachyon]
Length = 319
Score = 70.5 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 39/87 (44%), Positives = 56/87 (64%), Gaps = 4/87 (4%)
Query: 1 MLRADDGSLIYN-HNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV-C 58
+L +DG +I G+G+ TNNVA+Y LILGLKYA++ GF +V GDS+LV QV
Sbjct: 198 VLMTEDGRVISRLREGLGVATNNVAEYRGLILGLKYAIKHGFKRIKVYGDSQLVCYQVKG 257
Query: 59 CWLMEDQTPGMAELCGEAKRLKDKFLS 85
W + + M ELC E ++L++ F+S
Sbjct: 258 TW--QAKKENMMELCKEVRKLQENFIS 282
>gi|326490670|dbj|BAJ90002.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 324
Score = 70.5 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 39/87 (44%), Positives = 56/87 (64%), Gaps = 4/87 (4%)
Query: 1 MLRADDGSLIYN-HNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV-C 58
+L +DG +I G+G+ TNNVA+Y LILGLKYA++ GF +V GDS+LV QV
Sbjct: 203 VLMTEDGRVISRLREGLGVATNNVAEYRGLILGLKYAIRLGFKRIKVYGDSQLVCYQVKG 262
Query: 59 CWLMEDQTPGMAELCGEAKRLKDKFLS 85
W + + M ELC E ++L++ F+S
Sbjct: 263 TW--QAKKENMMELCKEVRKLQENFIS 287
>gi|297845448|ref|XP_002890605.1| RNase H domain-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297336447|gb|EFH66864.1| RNase H domain-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 536
Score = 70.5 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 43/94 (45%), Positives = 60/94 (63%), Gaps = 15/94 (15%)
Query: 1 MLRADDGSLIYN-HNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC 59
+L+ +DGSLI G+GI TNN A+Y +LILGLKYA++KG+ +V+GDSKLV MQ
Sbjct: 238 VLKTEDGSLICRLRQGLGIATNNAAEYHALILGLKYAIEKGYKKIKVKGDSKLVCMQ--- 294
Query: 60 WLMEDQTPG--------MAELCGEAKRLKDKFLS 85
+ Q G +A+L EAK+L +K +S
Sbjct: 295 ---KQQIKGQWKVNHEVLAKLHKEAKQLCNKCVS 325
>gi|218184677|gb|EEC67104.1| hypothetical protein OsI_33899 [Oryza sativa Indica Group]
Length = 323
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 56/87 (64%), Gaps = 4/87 (4%)
Query: 1 MLRADDGSLIYN-HNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV-C 58
+L +DG +I G+GI TNNVA+Y LILGL+YA++ GF V GDS+LV QV
Sbjct: 203 VLMTEDGRVISRLREGLGIVTNNVAEYRGLILGLRYAIRHGFKKIIVYGDSQLVCYQVKG 262
Query: 59 CWLMEDQTPGMAELCGEAKRLKDKFLS 85
W ++Q M ELC E ++LK+ F+S
Sbjct: 263 TWQTKNQN--MMELCKEVRKLKENFVS 287
>gi|115482348|ref|NP_001064767.1| Os10g0458700 [Oryza sativa Japonica Group]
gi|78708782|gb|ABB47757.1| retrotransposon protein, putative, Ty3-gypsy subclass, expressed
[Oryza sativa Japonica Group]
gi|113639376|dbj|BAF26681.1| Os10g0458700 [Oryza sativa Japonica Group]
gi|222612954|gb|EEE51086.1| hypothetical protein OsJ_31786 [Oryza sativa Japonica Group]
Length = 323
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 56/87 (64%), Gaps = 4/87 (4%)
Query: 1 MLRADDGSLIYN-HNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV-C 58
+L +DG +I G+GI TNNVA+Y LILGL+YA++ GF V GDS+LV QV
Sbjct: 203 VLMTEDGRVISRLREGLGIVTNNVAEYRGLILGLRYAIRHGFKKIIVYGDSQLVCYQVKG 262
Query: 59 CWLMEDQTPGMAELCGEAKRLKDKFLS 85
W ++Q M ELC E ++LK+ F+S
Sbjct: 263 TWQTKNQN--MMELCKEVRKLKENFVS 287
>gi|326499834|dbj|BAJ90752.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 347
Score = 70.1 bits (170), Expect = 2e-10, Method: Composition-based stats.
Identities = 40/86 (46%), Positives = 55/86 (63%), Gaps = 4/86 (4%)
Query: 1 MLRADDGSLIYN-HNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC- 58
++R DG++I G+GI TNN A+Y +L+LGL+YA +KGF R +GDSKLV QV
Sbjct: 226 VVRRSDGAMIAQLREGLGIATNNAAEYRALLLGLRYAAKKGFKYVRAQGDSKLVCNQVQD 285
Query: 59 CWLMEDQTPGMAELCGEAKRLKDKFL 84
W + + MA+LC + K LK FL
Sbjct: 286 LWRVRNDN--MADLCKKVKDLKGSFL 309
>gi|326488477|dbj|BAJ93907.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 70.1 bits (170), Expect = 2e-10, Method: Composition-based stats.
Identities = 40/86 (46%), Positives = 55/86 (63%), Gaps = 4/86 (4%)
Query: 1 MLRADDGSLIYN-HNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC- 58
++R DG++I G+GI TNN A+Y +L+LGL+YA +KGF R +GDSKLV QV
Sbjct: 145 VVRRSDGAMIAQLREGLGIATNNAAEYRALLLGLRYAAKKGFKYVRAQGDSKLVCNQVQD 204
Query: 59 CWLMEDQTPGMAELCGEAKRLKDKFL 84
W + + MA+LC + K LK FL
Sbjct: 205 LWRVRNDN--MADLCKKVKDLKGSFL 228
>gi|14140290|gb|AAK54296.1|AC034258_14 putative RNase [Oryza sativa Japonica Group]
Length = 289
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 56/87 (64%), Gaps = 4/87 (4%)
Query: 1 MLRADDGSLIYN-HNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV-C 58
+L +DG +I G+GI TNNVA+Y LILGL+YA++ GF V GDS+LV QV
Sbjct: 169 VLMTEDGRVISRLREGLGIVTNNVAEYRGLILGLRYAIRHGFKKIIVYGDSQLVCYQVKG 228
Query: 59 CWLMEDQTPGMAELCGEAKRLKDKFLS 85
W ++Q M ELC E ++LK+ F+S
Sbjct: 229 TWQTKNQN--MMELCKEVRKLKENFVS 253
>gi|326494200|dbj|BAJ90369.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 280
Score = 69.7 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 39/87 (44%), Positives = 56/87 (64%), Gaps = 4/87 (4%)
Query: 1 MLRADDGSLIYN-HNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV-C 58
+L +DG +I G+G+ TNNVA+Y LILGLKYA++ GF +V GDS+LV QV
Sbjct: 159 VLMTEDGRVISRLREGLGVATNNVAEYRGLILGLKYAIRLGFKRIKVYGDSQLVCYQVKG 218
Query: 59 CWLMEDQTPGMAELCGEAKRLKDKFLS 85
W + + M ELC E ++L++ F+S
Sbjct: 219 TW--QAKKENMMELCKEVRKLQENFIS 243
>gi|357146482|ref|XP_003574008.1| PREDICTED: uncharacterized protein LOC100824410 isoform 2
[Brachypodium distachyon]
Length = 298
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 56/87 (64%), Gaps = 4/87 (4%)
Query: 1 MLRADDGSLIYN-HNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV-C 58
+L +DG +I G+G+ TNNVA+Y LILGLKYA++ GF +V GDS+LV QV
Sbjct: 177 VLMTEDGRVISRLREGLGVATNNVAEYRGLILGLKYAIKHGFKRIKVYGDSQLVCYQVKG 236
Query: 59 CWLMEDQTPGMAELCGEAKRLKDKFLS 85
W + + M ELC E ++L++ F+S
Sbjct: 237 TWQAKKEN--MMELCKEVRKLQENFIS 261
>gi|38636806|dbj|BAD03047.1| putative RNase H domain-containing protein [Oryza sativa Japonica
Group]
gi|38636983|dbj|BAD03243.1| putative RNase H domain-containing protein [Oryza sativa Japonica
Group]
gi|125560347|gb|EAZ05795.1| hypothetical protein OsI_28030 [Oryza sativa Indica Group]
gi|125602385|gb|EAZ41710.1| hypothetical protein OsJ_26246 [Oryza sativa Japonica Group]
Length = 351
Score = 68.6 bits (166), Expect = 5e-10, Method: Composition-based stats.
Identities = 40/85 (47%), Positives = 52/85 (61%), Gaps = 4/85 (4%)
Query: 1 MLRADDGSLIYN-HNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC- 58
++R DG++I G+GI TNN A+Y +LILGL YA +KGF R +GDSKLV QV
Sbjct: 226 VIRRLDGTVIAQLREGLGIATNNAAEYRALILGLTYAAKKGFKYIRAQGDSKLVCNQVSD 285
Query: 59 CWLMEDQTPGMAELCGEAKRLKDKF 83
W T MA+LC K +K +F
Sbjct: 286 VWRARHDT--MADLCKRVKEIKGRF 308
>gi|326505852|dbj|BAJ91165.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 55/86 (63%), Gaps = 4/86 (4%)
Query: 1 MLRADDGSLIYN-HNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC- 58
++R DG++I G+GI TNN A+Y +L+LGL+YA +KGF R +GDSKLV QV
Sbjct: 145 VVRRSDGAMIAQLREGLGIATNNAAEYRALLLGLRYAAKKGFKYVRAQGDSKLVCNQVQD 204
Query: 59 CWLMEDQTPGMAELCGEAKRLKDKFL 84
W + + MA+LC + K LK FL
Sbjct: 205 LWRVRNDN--MADLCKKVKDLKGSFL 228
>gi|387169560|gb|AFJ66219.1| hypothetical protein 34G24.24 [Capsella rubella]
Length = 448
Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 59/87 (67%), Gaps = 4/87 (4%)
Query: 1 MLRADDGSLIYN-HNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV-C 58
+L+ +DGS I G+GI TNN A+Y LILGLK+A+++G+ +V+GDSKLV MQ+
Sbjct: 338 VLKTEDGSFICKMRQGLGIATNNAAEYHGLILGLKHAIERGYRKIKVKGDSKLVSMQMKG 397
Query: 59 CWLMEDQTPGMAELCGEAKRLKDKFLS 85
W + + +++L EAK+L D+ +S
Sbjct: 398 QWKVNHEV--LSKLYKEAKQLSDQCVS 422
>gi|297795913|ref|XP_002865841.1| hypothetical protein ARALYDRAFT_357356 [Arabidopsis lyrata subsp.
lyrata]
gi|297311676|gb|EFH42100.1| hypothetical protein ARALYDRAFT_357356 [Arabidopsis lyrata subsp.
lyrata]
Length = 322
Score = 67.8 bits (164), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 59/87 (67%), Gaps = 4/87 (4%)
Query: 1 MLRADDGSLIYN-HNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV-C 58
+L+ +DGSLI G+GI TNN A+Y LILGLK+A++KG+ +V+ DSKLV MQ+
Sbjct: 212 VLKTEDGSLICKMRQGLGIATNNAAEYHGLILGLKHAIEKGYTKIKVKTDSKLVCMQMKG 271
Query: 59 CWLMEDQTPGMAELCGEAKRLKDKFLS 85
W + + +++L EAK+L D+ LS
Sbjct: 272 QWKVNHEV--LSKLHKEAKQLSDQCLS 296
>gi|242081781|ref|XP_002445659.1| hypothetical protein SORBIDRAFT_07g023590 [Sorghum bicolor]
gi|241942009|gb|EES15154.1| hypothetical protein SORBIDRAFT_07g023590 [Sorghum bicolor]
Length = 268
Score = 67.8 bits (164), Expect = 9e-10, Method: Composition-based stats.
Identities = 41/85 (48%), Positives = 54/85 (63%), Gaps = 4/85 (4%)
Query: 1 MLRADDGSLIYN-HNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC- 58
++R DGS+I G+GI TNN A+Y +LILGL YA +KGF R +GDSKLV QV
Sbjct: 147 IIRRIDGSVIAQLREGLGIATNNAAEYRALILGLTYAAKKGFKYIRAQGDSKLVCNQVQD 206
Query: 59 CWLMEDQTPGMAELCGEAKRLKDKF 83
W ++++ MA LC + K LK F
Sbjct: 207 LWRVKNEN--MAGLCKKVKVLKGTF 229
>gi|413921723|gb|AFW61655.1| putative rnase H family protein [Zea mays]
Length = 262
Score = 67.4 bits (163), Expect = 1e-09, Method: Composition-based stats.
Identities = 40/85 (47%), Positives = 52/85 (61%), Gaps = 4/85 (4%)
Query: 1 MLRADDGSLIYN-HNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC- 58
++R DGS+I G+GI TNN A+Y +LILGL YA +KGF R +GDSKLV QV
Sbjct: 141 IIRQVDGSVIAQLREGLGIATNNAAEYRALILGLTYAAKKGFKYIRAQGDSKLVCNQVQD 200
Query: 59 CWLMEDQTPGMAELCGEAKRLKDKF 83
W +++ MA C + K LK F
Sbjct: 201 IWRVKNDN--MASFCKKVKELKGTF 223
>gi|195627916|gb|ACG35788.1| retrotransposon protein Ty3-gypsy subclass [Zea mays]
gi|238009648|gb|ACR35859.1| unknown [Zea mays]
gi|413921724|gb|AFW61656.1| putative rnase H family protein [Zea mays]
Length = 336
Score = 67.4 bits (163), Expect = 1e-09, Method: Composition-based stats.
Identities = 40/85 (47%), Positives = 52/85 (61%), Gaps = 4/85 (4%)
Query: 1 MLRADDGSLIYN-HNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC- 58
++R DGS+I G+GI TNN A+Y +LILGL YA +KGF R +GDSKLV QV
Sbjct: 215 IIRQVDGSVIAQLREGLGIATNNAAEYRALILGLTYAAKKGFKYIRAQGDSKLVCNQVQD 274
Query: 59 CWLMEDQTPGMAELCGEAKRLKDKF 83
W +++ MA C + K LK F
Sbjct: 275 IWRVKNDN--MASFCKKVKELKGTF 297
>gi|194700066|gb|ACF84117.1| unknown [Zea mays]
gi|219887863|gb|ACL54306.1| unknown [Zea mays]
gi|413921720|gb|AFW61652.1| putative rnase H family protein isoform 1 [Zea mays]
gi|413921721|gb|AFW61653.1| putative rnase H family protein isoform 2 [Zea mays]
Length = 269
Score = 67.4 bits (163), Expect = 1e-09, Method: Composition-based stats.
Identities = 40/85 (47%), Positives = 52/85 (61%), Gaps = 4/85 (4%)
Query: 1 MLRADDGSLIYN-HNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC- 58
++R DGS+I G+GI TNN A+Y +LILGL YA +KGF R +GDSKLV QV
Sbjct: 148 IIRQVDGSVIAQLREGLGIATNNAAEYRALILGLTYAAKKGFKYIRAQGDSKLVCNQVQD 207
Query: 59 CWLMEDQTPGMAELCGEAKRLKDKF 83
W +++ MA C + K LK F
Sbjct: 208 IWRVKNDN--MASFCKKVKELKGTF 230
>gi|171921105|gb|ACB59203.1| RNase H domain-containing protein [Brassica oleracea]
Length = 492
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 61/87 (70%), Gaps = 4/87 (4%)
Query: 1 MLRADDGSLIYN-HNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC- 58
+L+ +DGSLI G+GI TNN A+Y LILGLK+A+++G+ +V+GDSKL+ MQ+
Sbjct: 179 VLKTEDGSLICKVRQGLGIATNNAAEYHGLILGLKHAIERGYKKIKVKGDSKLICMQIKG 238
Query: 59 CWLMEDQTPGMAELCGEAKRLKDKFLS 85
W + ++ +++L EAK+L ++ +S
Sbjct: 239 KWKVNNEV--LSKLHEEAKQLTNECIS 263
>gi|226495263|ref|NP_001141955.1| uncharacterized protein LOC100274104 [Zea mays]
gi|194706572|gb|ACF87370.1| unknown [Zea mays]
gi|413921719|gb|AFW61651.1| putative rnase H family protein [Zea mays]
Length = 192
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 52/85 (61%), Gaps = 4/85 (4%)
Query: 1 MLRADDGSLIYN-HNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC- 58
++R DGS+I G+GI TNN A+Y +LILGL YA +KGF R +GDSKLV QV
Sbjct: 71 IIRQVDGSVIAQLREGLGIATNNAAEYRALILGLTYAAKKGFKYIRAQGDSKLVCNQVQD 130
Query: 59 CWLMEDQTPGMAELCGEAKRLKDKF 83
W +++ MA C + K LK F
Sbjct: 131 IWRVKNDN--MASFCKKVKELKGTF 153
>gi|226532456|ref|NP_001145250.1| uncharacterized protein LOC100278534 [Zea mays]
gi|195653679|gb|ACG46307.1| hypothetical protein [Zea mays]
Length = 276
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 55/87 (63%), Gaps = 4/87 (4%)
Query: 1 MLRADDGSLIYN-HNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC- 58
++R DGS+I G+GI TNN A+Y +LILGL YA +KGF R +GDSKLV QV
Sbjct: 158 IIRRLDGSVIAVLREGLGIMTNNAAEYRALILGLNYASKKGFKYIRCQGDSKLVCNQVQG 217
Query: 59 CWLMEDQTPGMAELCGEAKRLKDKFLS 85
W ++ M+ LC AK LK+ FL+
Sbjct: 218 AWRA--RSDNMSILCDIAKELKETFLT 242
>gi|242089145|ref|XP_002440405.1| hypothetical protein SORBIDRAFT_09g000480 [Sorghum bicolor]
gi|241945690|gb|EES18835.1| hypothetical protein SORBIDRAFT_09g000480 [Sorghum bicolor]
Length = 341
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/87 (49%), Positives = 55/87 (63%), Gaps = 4/87 (4%)
Query: 1 MLRADDGSLI-YNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC 59
++R DGS+I G+GI TNN A+Y +LILGL YA +KGF R +GDSKLV QV
Sbjct: 222 IIRRLDGSVIALLREGLGIMTNNAAEYRALILGLNYASKKGFKYIRCQGDSKLVCNQVRG 281
Query: 60 -WLMEDQTPGMAELCGEAKRLKDKFLS 85
W ++ MA LC AK LK+ FL+
Sbjct: 282 DW--RARSDNMAVLCDIAKELKETFLT 306
>gi|223949765|gb|ACN28966.1| unknown [Zea mays]
gi|413942425|gb|AFW75074.1| putative rnase H family protein [Zea mays]
Length = 331
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 55/87 (63%), Gaps = 4/87 (4%)
Query: 1 MLRADDGSLIYN-HNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC- 58
++R DGS+I G+GI TNN A+Y +LILGL YA +KGF R +GDSKLV QV
Sbjct: 213 IIRRLDGSVIAVLREGLGIMTNNAAEYRALILGLNYASKKGFKYIRCQGDSKLVCNQVQG 272
Query: 59 CWLMEDQTPGMAELCGEAKRLKDKFLS 85
W ++ M+ LC AK LK+ FL+
Sbjct: 273 AW--RARSDNMSILCDIAKELKETFLT 297
>gi|387169510|gb|AFJ66171.1| hypothetical protein 11M19.15 [Arabidopsis halleri]
Length = 231
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 43/58 (74%), Gaps = 1/58 (1%)
Query: 1 MLRADDGSLIYN-HNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
+L+ +DGSL+ G+GI TNN A+Y LILGLK+A++KG+ +V+ DSKLV MQV
Sbjct: 149 VLKTEDGSLVCKMRQGLGIATNNAAEYHGLILGLKHAIEKGYTKIKVKTDSKLVCMQV 206
>gi|168049717|ref|XP_001777308.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671284|gb|EDQ57838.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 283
Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 52/88 (59%), Gaps = 4/88 (4%)
Query: 1 MLRADDGSLIYN-HNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC 59
++R DGS+ G+G TNNVA+Y + ILGLK AL +G + RV+GDSKLV QV
Sbjct: 105 LVRGPDGSVFCELREGLGSVTNNVAEYRAFILGLKGALDRGIYRVRVQGDSKLVCQQVLG 164
Query: 60 -WLMEDQTPGMAELCGEAKRLKDKFLSI 86
W + D+ G+ L EA+ L F I
Sbjct: 165 KWKVNDE--GLLPLWKEAQMLMLNFREI 190
>gi|413921722|gb|AFW61654.1| putative rnase H family protein [Zea mays]
Length = 205
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/58 (55%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
Query: 1 MLRADDGSLIYN-HNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
++R DGS+I G+GI TNN A+Y +LILGL YA +KGF R +GDSKLV QV
Sbjct: 148 IIRQVDGSVIAQLREGLGIATNNAAEYRALILGLTYAAKKGFKYIRAQGDSKLVCNQV 205
>gi|145595869|ref|YP_001160166.1| phosphoglycerate mutase [Salinispora tropica CNB-440]
gi|145305206|gb|ABP55788.1| Phosphoglycerate mutase [Salinispora tropica CNB-440]
Length = 412
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Query: 15 GVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELC 73
+G TNNVA+Y LI GL+ A++ G R DSKLV Q+C W +++ PG+ L
Sbjct: 42 AIGTATNNVAEYRGLIAGLEAAVELGAAEVEARLDSKLVVEQMCGRWQIKN--PGLRPLA 99
Query: 74 GEAKRLKDKFLSI 86
+A RL D+F ++
Sbjct: 100 AQAARLVDQFTAV 112
>gi|242037781|ref|XP_002466285.1| hypothetical protein SORBIDRAFT_01g005015 [Sorghum bicolor]
gi|241920139|gb|EER93283.1| hypothetical protein SORBIDRAFT_01g005015 [Sorghum bicolor]
Length = 1005
Score = 51.6 bits (122), Expect = 7e-05, Method: Composition-based stats.
Identities = 30/67 (44%), Positives = 41/67 (61%), Gaps = 7/67 (10%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMEDQT---PGMAELCGEA 76
+NNVA+Y +L+ GLK A++ G VRGDS+LV QV M+ + P M C E
Sbjct: 485 SNNVAEYEALVNGLKIAIELGVRRLDVRGDSQLVIDQV----MKASSCHDPKMEAYCKEV 540
Query: 77 KRLKDKF 83
+RL+DKF
Sbjct: 541 RRLEDKF 547
>gi|18568245|gb|AAL75982.1|AF466203_11 putative prpol [Zea mays]
Length = 1854
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 7/70 (10%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMED---QTPGMAELCGEA 76
+NNVA+Y +L+ GL+ A++ G RGDS+LV QV M++ + P M C E
Sbjct: 1361 SNNVAEYEALVNGLRIAIELGVIRLDARGDSQLVIDQV----MKNSHCRDPKMEAYCDEV 1416
Query: 77 KRLKDKFLSI 86
+RL+DKF +
Sbjct: 1417 RRLEDKFFGL 1426
>gi|451340121|ref|ZP_21910623.1| Phosphoglycerate mutase family [Amycolatopsis azurea DSM 43854]
gi|449417098|gb|EMD22783.1| Phosphoglycerate mutase family [Amycolatopsis azurea DSM 43854]
Length = 375
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 32/69 (46%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 16 VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCG 74
+GI TNNVA+YG LI GL A + G VR DSKLV Q+ W ++ P M L
Sbjct: 42 IGIATNNVAEYGGLIAGLTAAAELGVSTVDVRMDSKLVVEQMSGRWKVKH--PSMQPLNA 99
Query: 75 EAKRLKDKF 83
EAK L +F
Sbjct: 100 EAKELAARF 108
>gi|291302271|ref|YP_003513549.1| ribonuclease H [Stackebrandtia nassauensis DSM 44728]
gi|290571491|gb|ADD44456.1| ribonuclease H [Stackebrandtia nassauensis DSM 44728]
Length = 137
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Query: 16 VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV-CCWLMEDQTPGMAELCG 74
+GI TNNVA+Y LI GL A + G N VR DSKLV Q+ W + + PG+ L
Sbjct: 43 LGIATNNVAEYSGLIAGLTAARELGAANVAVRMDSKLVVEQMNGNWKV--RHPGLRPLAA 100
Query: 75 EAKRLKDKFLSI 86
EA L +F S+
Sbjct: 101 EAAALVRQFDSV 112
>gi|338808403|gb|AEJ07907.1| putative Huck2 pol protein [Zea luxurians]
Length = 619
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 7/70 (10%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMED---QTPGMAELCGEA 76
+NNVA+Y +LI GL+ A++ G RGDS+LV QV M++ + P M C E
Sbjct: 47 SNNVAEYEALINGLRIAIELGVRRLDARGDSQLVIDQV----MKNSHCRDPKMEAYCDEV 102
Query: 77 KRLKDKFLSI 86
+RL+DKF +
Sbjct: 103 RRLEDKFYGL 112
>gi|18568246|gb|AAL75983.1|AF466203_12 putative gag-pol precursor -orf2 [Zea mays]
Length = 1007
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 7/70 (10%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMED---QTPGMAELCGEA 76
+NNVA+Y +L+ GL+ A++ G RGDS+LV QV M++ + P M C E
Sbjct: 496 SNNVAEYEALVNGLRIAIKLGVRRLDARGDSQLVIDQV----MKNSHCRDPKMEAYCDEV 551
Query: 77 KRLKDKFLSI 86
+RL+DKF +
Sbjct: 552 RRLEDKFFGL 561
>gi|256375028|ref|YP_003098688.1| phosphoglycerate mutase [Actinosynnema mirum DSM 43827]
gi|255919331|gb|ACU34842.1| Phosphoglycerate mutase [Actinosynnema mirum DSM 43827]
Length = 391
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 33/82 (40%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 6 DGSLIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMED 64
D L +G+ TNNVA+Y LI GL+ A + G VR DSKLV Q+ W ++
Sbjct: 30 DTVLAERFEAIGVATNNVAEYRGLIAGLRAAAELGATEVDVRMDSKLVVEQMSGRWQIKH 89
Query: 65 QTPGMAELCGEAKRLKDKFLSI 86
P M L EAK L F S+
Sbjct: 90 --PAMKPLAAEAKELAGDFESV 109
>gi|238060393|ref|ZP_04605102.1| phosphoglycerate mutase [Micromonospora sp. ATCC 39149]
gi|237882204|gb|EEP71032.1| phosphoglycerate mutase [Micromonospora sp. ATCC 39149]
Length = 410
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 15 GVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELC 73
+G TNNVA+Y LI GL+ A + G R DSKLV Q+C W ++ PG+ L
Sbjct: 42 AIGTATNNVAEYRGLIAGLEAAAELGAVEVDARMDSKLVVEQMCGRWQIKH--PGLRPLA 99
Query: 74 GEAKRLKDKFLSI 86
+A L D+F ++
Sbjct: 100 AQAAALVDRFAAV 112
>gi|302817304|ref|XP_002990328.1| hypothetical protein SELMODRAFT_131456 [Selaginella moellendorffii]
gi|302825346|ref|XP_002994296.1| hypothetical protein SELMODRAFT_138460 [Selaginella moellendorffii]
gi|300137827|gb|EFJ04640.1| hypothetical protein SELMODRAFT_138460 [Selaginella moellendorffii]
gi|300141890|gb|EFJ08597.1| hypothetical protein SELMODRAFT_131456 [Selaginella moellendorffii]
Length = 131
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 1 MLRADDGSLIYN-HNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC 59
+LR GS+I + G+G TNNVA+Y +LILGL+ AL + + +V GDS LV QV
Sbjct: 17 LLRNPKGSVIEKLYMGLGTATNNVAEYEALILGLQAALDRNVTSIQVFGDSNLVCKQVAG 76
Query: 60 -WLMEDQTPGMAELCGEAKRLKDKFLS 85
W + + G+ L + + L +F +
Sbjct: 77 EWAVRHE--GLRALHAQVQALSMQFTT 101
>gi|300712184|ref|YP_003737998.1| ribonuclease H [Halalkalicoccus jeotgali B3]
gi|448295873|ref|ZP_21485936.1| ribonuclease H [Halalkalicoccus jeotgali B3]
gi|299125867|gb|ADJ16206.1| ribonuclease H [Halalkalicoccus jeotgali B3]
gi|445583302|gb|ELY37634.1| ribonuclease H [Halalkalicoccus jeotgali B3]
Length = 197
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Query: 1 MLRADDGSLIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV-CC 59
+L + DG + + +G TTNN A+Y +L GL+ A + GF VRGDS+LV QV
Sbjct: 89 VLVSSDGIVAEGNERIGETTNNRAEYEALARGLEVAREYGFDAVEVRGDSQLVVKQVRGE 148
Query: 60 WLMEDQTPGMAE 71
W D PGM E
Sbjct: 149 WDAND--PGMRE 158
>gi|418050525|ref|ZP_12688611.1| Phosphoglycerate mutase [Mycobacterium rhodesiae JS60]
gi|353188149|gb|EHB53670.1| Phosphoglycerate mutase [Mycobacterium rhodesiae JS60]
Length = 357
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 34/85 (40%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Query: 4 ADDGSLIYNH-NGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WL 61
AD +++ H +G+TTNNVA+Y LI GL+ A G V DSKLV Q+ W
Sbjct: 27 ADHQTVLAEHGTAIGVTTNNVAEYRGLIAGLEEARALGANEVAVSMDSKLVVEQMTGRWK 86
Query: 62 MEDQTPGMAELCGEAKRLKDKFLSI 86
++ P MAEL +A+ L F S+
Sbjct: 87 VKH--PAMAELQQQARALASTFDSV 109
>gi|23928443|gb|AAN40029.1| putative gag-pol precursor [Zea mays]
Length = 1313
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 9/71 (12%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC----CWLMEDQTPGMAELCGE 75
+NN+A+Y +L+ GL+ A++ G RGDS+LV QV C + P M C E
Sbjct: 989 SNNMAEYEALVNGLRIAIELGVRRLDARGDSQLVIDQVIKNSHC-----RDPKMEAYCDE 1043
Query: 76 AKRLKDKFLSI 86
+RL+DKF +
Sbjct: 1044 VRRLEDKFYGL 1054
>gi|242034263|ref|XP_002464526.1| hypothetical protein SORBIDRAFT_01g020096 [Sorghum bicolor]
gi|241918380|gb|EER91524.1| hypothetical protein SORBIDRAFT_01g020096 [Sorghum bicolor]
Length = 113
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 37/68 (54%), Gaps = 9/68 (13%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV----CCWLMEDQTPGMAELCGE 75
+NN A+Y +L+ GLK A++ G VRGDS+LV QV C P M C E
Sbjct: 26 SNNAAEYEALVNGLKIAIELGVRRLDVRGDSRLVIDQVMKTSSC-----HDPKMEAYCKE 80
Query: 76 AKRLKDKF 83
+RL+ KF
Sbjct: 81 VRRLEGKF 88
>gi|433602799|ref|YP_007035168.1| hypothetical protein BN6_09660 [Saccharothrix espanaensis DSM
44229]
gi|407880652|emb|CCH28295.1| hypothetical protein BN6_09660 [Saccharothrix espanaensis DSM
44229]
Length = 381
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 9 LIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTP 67
L+ G+G+ TNNVA+Y LI GL+ A + G R DSKLV Q+ W + + P
Sbjct: 49 LVERSEGIGVATNNVAEYRGLIAGLRAAAELGASAVVARMDSKLVVEQMSGRW--QVKHP 106
Query: 68 GMAELCGEAKRLKDKFLSI 86
M L EA+ + F S+
Sbjct: 107 SMQPLAREAREVASGFASV 125
>gi|412993526|emb|CCO14037.1| ribonuclease H [Bathycoccus prasinos]
Length = 383
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 16 VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCG 74
+G+ T N A+Y +LI GLK A++ G + RVRGDS L+ QV W +++ P + L
Sbjct: 228 LGVATVNEAEYHALITGLKAAIELGIEDIRVRGDSNLIVSQVKGDWKVKE--PRLIPLHA 285
Query: 75 EAKRLKDKF 83
E +K KF
Sbjct: 286 ECNEMKKKF 294
>gi|376290862|ref|YP_005163109.1| 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
[Corynebacterium diphtheriae C7 (beta)]
gi|372104258|gb|AEX67855.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
[Corynebacterium diphtheriae C7 (beta)]
Length = 377
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 36/94 (38%), Positives = 48/94 (51%), Gaps = 13/94 (13%)
Query: 4 ADDGSLIYNHNG----------VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLV 53
A G+LIYN + VG TNNVA+Y L+ GL+ A++ G VR DSKLV
Sbjct: 18 AGSGTLIYNADRSQVLKEYSYVVGKATNNVAEYHGLLNGLRGAVELGATEVSVRMDSKLV 77
Query: 54 HMQVCC-WLMEDQTPGMAELCGEAKRLKDKFLSI 86
Q+ W ++ P M EL E K+L S+
Sbjct: 78 VEQMSGRWKIKH--PDMKELALECKKLASSIGSV 109
>gi|389846161|ref|YP_006348400.1| ribonuclease HI [Haloferax mediterranei ATCC 33500]
gi|448616219|ref|ZP_21664929.1| ribonuclease H [Haloferax mediterranei ATCC 33500]
gi|388243467|gb|AFK18413.1| ribonuclease HI [Haloferax mediterranei ATCC 33500]
gi|445750874|gb|EMA02311.1| ribonuclease H [Haloferax mediterranei ATCC 33500]
Length = 197
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 16 VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV-CCWLMEDQTPGMAELCG 74
+G TTNN A+Y +LI L A + G+ VRGDS+L+ QV W D PG+ E
Sbjct: 104 IGETTNNRAEYEALIEALSVADEYGYDEVDVRGDSQLIVKQVRGEWKTND--PGLRERRV 161
Query: 75 EAKRLKDKF 83
+A+ L ++F
Sbjct: 162 KARELLERF 170
>gi|183983294|ref|YP_001851585.1| bifunctional RNase H/acid phosphatase [Mycobacterium marinum M]
gi|443491565|ref|YP_007369712.1| Histidine phosphatase [Mycobacterium liflandii 128FXT]
gi|183176620|gb|ACC41730.1| conserved hypothetical protein [Mycobacterium marinum M]
gi|442584062|gb|AGC63205.1| Histidine phosphatase [Mycobacterium liflandii 128FXT]
Length = 374
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 31/79 (39%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 9 LIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTP 67
L + +G TNNVA+Y LI GL A++ G V DSKLV Q+C W ++ P
Sbjct: 33 LAESKQAIGRATNNVAEYRGLIAGLDDAVKLGATEVSVLMDSKLVVEQMCGRWKVKH--P 90
Query: 68 GMAELCGEAKRLKDKFLSI 86
+ EL G+A+ L +F I
Sbjct: 91 DLVELHGQARELAGQFRRI 109
>gi|118617021|ref|YP_905353.1| bifunctional RNase H/acid phosphatase [Mycobacterium ulcerans
Agy99]
gi|118569131|gb|ABL03882.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
Length = 374
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 31/79 (39%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 9 LIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTP 67
L + +G TNNVA+Y LI GL A++ G V DSKLV Q+C W ++ P
Sbjct: 33 LAESKQAIGRATNNVAEYRGLIAGLDDAVKLGATEVSVLMDSKLVVEQMCGRWKVKH--P 90
Query: 68 GMAELCGEAKRLKDKFLSI 86
+ EL G+A+ L +F I
Sbjct: 91 DLVELHGQARELAGQFRRI 109
>gi|409730081|ref|ZP_11271676.1| ribonuclease H [Halococcus hamelinensis 100A6]
gi|448723224|ref|ZP_21705748.1| ribonuclease H [Halococcus hamelinensis 100A6]
gi|445787966|gb|EMA38692.1| ribonuclease H [Halococcus hamelinensis 100A6]
Length = 196
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 16 VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV-CCWLMEDQTPGMAELCG 74
+G TTNN A+Y +L+ L+ A + GF +RGDS+LV QV W D PG+ E
Sbjct: 104 IGETTNNRAEYEALLRVLELAREYGFSTVDIRGDSQLVVEQVRGAWDTND--PGLRERRV 161
Query: 75 EAKRLKDKF 83
A+ L D F
Sbjct: 162 RARELLDGF 170
>gi|448498360|ref|ZP_21610793.1| ribonuclease H [Halorubrum coriense DSM 10284]
gi|445698781|gb|ELZ50820.1| ribonuclease H [Halorubrum coriense DSM 10284]
Length = 198
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 6 DGSLIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV-CCWLMED 64
DG + GVG TNN A+Y +LI L+ A + GF VRGDS+L+ QV W D
Sbjct: 94 DGVVAEGGEGVGRATNNQAEYAALIRALEAADEYGFDAVDVRGDSQLIVKQVRGEWDAND 153
Query: 65 QTPGMAELCGEAKRLKDKF 83
P + E A+ L +F
Sbjct: 154 --PELRERRVRARELLTRF 170
>gi|354612078|ref|ZP_09030030.1| ribonuclease H [Halobacterium sp. DL1]
gi|353191656|gb|EHB57162.1| ribonuclease H [Halobacterium sp. DL1]
Length = 198
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 1 MLRADDGSLIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV-CC 59
+L + DG + + +G TNN A+Y +L+ GL+ A Q GF VRGDS+L+ QV
Sbjct: 90 VLVSGDGIVAEDGETIGRATNNQAEYEALLAGLQAADQFGFDEVEVRGDSQLIVKQVKGA 149
Query: 60 WLMEDQTPGMAELCGEAKRLKDKF 83
W D P + E + L ++F
Sbjct: 150 WDTND--PDLREKRVAVRELLERF 171
>gi|448589960|ref|ZP_21650019.1| ribonuclease H [Haloferax elongans ATCC BAA-1513]
gi|445735075|gb|ELZ86628.1| ribonuclease H [Haloferax elongans ATCC BAA-1513]
Length = 197
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 6 DGSLIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV-CCWLMED 64
DG + +G TTNN A+Y +L+ L A + G+ VRGDS+L+ QV W D
Sbjct: 94 DGIVAEGSKRIGKTTNNRAEYEALVEALTAAAEYGYDEVDVRGDSQLIVKQVRGEWKTND 153
Query: 65 QTPGMAELCGEAKRLKDKF 83
PG+ E + L D+F
Sbjct: 154 --PGLREHRVTVRELLDRF 170
>gi|383776499|ref|YP_005461065.1| putative bifunctional ribonuclease H/phosphoglycerate mutase
[Actinoplanes missouriensis 431]
gi|381369731|dbj|BAL86549.1| putative bifunctional ribonuclease H/phosphoglycerate mutase
[Actinoplanes missouriensis 431]
Length = 369
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 30/76 (39%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 9 LIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTP 67
L+ ++ G+TTNNVA+Y LI GL+ A + VR DSKLV Q+ W +++
Sbjct: 35 LLERYDSAGVTTNNVAEYSGLIAGLRAAAELNATRVDVRMDSKLVIEQMSGRWQIKN--A 92
Query: 68 GMAELCGEAKRLKDKF 83
G+ L EA L KF
Sbjct: 93 GLRPLAAEAATLVGKF 108
>gi|448579976|ref|ZP_21644805.1| ribonuclease H [Haloferax larsenii JCM 13917]
gi|445722649|gb|ELZ74306.1| ribonuclease H [Haloferax larsenii JCM 13917]
Length = 197
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 6 DGSLIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV-CCWLMED 64
DG + +G TTNN A+Y +L+ L A + G+ VRGDS+L+ QV W D
Sbjct: 94 DGIVAEGSKRIGKTTNNRAEYEALVEALTAAAEYGYDEVDVRGDSQLIVKQVRGEWKTND 153
Query: 65 QTPGMAELCGEAKRLKDKF 83
PG+ E + L D+F
Sbjct: 154 --PGLREHRVTVRELLDQF 170
>gi|376248942|ref|YP_005140886.1| 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
[Corynebacterium diphtheriae HC04]
gi|376251740|ref|YP_005138621.1| 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
[Corynebacterium diphtheriae HC03]
gi|376257554|ref|YP_005145445.1| 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
[Corynebacterium diphtheriae VA01]
gi|372113244|gb|AEX79303.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
[Corynebacterium diphtheriae HC03]
gi|372115510|gb|AEX81568.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
[Corynebacterium diphtheriae HC04]
gi|372120071|gb|AEX83805.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
[Corynebacterium diphtheriae VA01]
Length = 375
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 36/94 (38%), Positives = 47/94 (50%), Gaps = 13/94 (13%)
Query: 4 ADDGSLIYNHNG----------VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLV 53
A G+LIYN + VG TNNVA+Y L+ GL+ A + G VR DSKLV
Sbjct: 18 AGSGTLIYNADRSQVLKEYSYVVGKATNNVAEYHGLLNGLRGAAELGATEVSVRMDSKLV 77
Query: 54 HMQVCC-WLMEDQTPGMAELCGEAKRLKDKFLSI 86
Q+ W ++ P M EL E K+L S+
Sbjct: 78 VEQMSGRWKIKH--PDMKELALECKKLASSIGSV 109
>gi|18568247|gb|AAL75984.1|AF466203_13 putative prpol [Zea mays]
Length = 1850
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 7/70 (10%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMED---QTPGMAELCGEA 76
+NNVA+Y +L+ GL+ A++ G RGDS+LV QV M++ + P M E
Sbjct: 1481 SNNVAEYEALVNGLRIAIELGVRRLDARGDSQLVIDQV----MKNSHCRDPKMEAYYDEV 1536
Query: 77 KRLKDKFLSI 86
+RL+DKF +
Sbjct: 1537 RRLEDKFFGL 1546
>gi|386846497|ref|YP_006264510.1| bifunctional RNase H/acid phosphatase [Actinoplanes sp. SE50/110]
gi|359834001|gb|AEV82442.1| bifunctional RNase H/acid phosphatase [Actinoplanes sp. SE50/110]
Length = 366
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 9 LIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTP 67
L+ + +G TNNVA+Y LI GL+ A + +R DSKLV Q+ W +++ P
Sbjct: 37 LLERYAALGTATNNVAEYSGLIAGLRAAAELNAARVDIRMDSKLVIEQMSGRWQIKN--P 94
Query: 68 GMAELCGEAKRLKDKFLSI 86
G+ L EA +L +F ++
Sbjct: 95 GLRPLAAEAAQLVARFQTV 113
>gi|19551096|gb|AAL91601.1|AC099400_7 Putative gag-pol precursor [Oryza sativa Japonica Group]
Length = 1416
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 33/82 (40%), Positives = 44/82 (53%), Gaps = 6/82 (7%)
Query: 6 DGSLIYNHNGVGI---TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WL 61
DGS G GI T++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W
Sbjct: 1124 DGSKRLTGTGAGIHFSTSHNVAEYEALLHGLRIAISLGIRRLIVRGDSQLVVNQVMKEWS 1183
Query: 62 MEDQTPGMAELCGEAKRLKDKF 83
D M E ++L+DKF
Sbjct: 1184 CLDDN--MTAYRQEVRKLEDKF 1203
>gi|453074656|ref|ZP_21977448.1| bifunctional RNase H/acid phosphatase [Rhodococcus triatomae BKS
15-14]
gi|452764266|gb|EME22537.1| bifunctional RNase H/acid phosphatase [Rhodococcus triatomae BKS
15-14]
Length = 366
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 4 ADDGSLIYNH-NGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WL 61
AD G+++ +G+GI TNNVA+Y LI GL A + G R DSKLV Q+ W
Sbjct: 27 ADTGAVLAERCDGLGIATNNVAEYNGLIAGLSAAAELGAEVVDARMDSKLVVEQMSGRWK 86
Query: 62 MEDQTPGMAELCGEAKRLKDKFLSI 86
++ P M L A+ + D F +
Sbjct: 87 VKH--PDMIPLARRAREIADGFARV 109
>gi|354614362|ref|ZP_09032231.1| Phosphoglycerate mutase [Saccharomonospora paurometabolica YIM
90007]
gi|353221277|gb|EHB85646.1| Phosphoglycerate mutase [Saccharomonospora paurometabolica YIM
90007]
Length = 443
Score = 45.4 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 26/56 (46%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 4 ADDGS-LIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC 58
AD G L G+G+TTNNVA+Y L+ GL+ A G V+ DSKLV Q+C
Sbjct: 30 ADTGEVLTERQEGLGVTTNNVAEYRGLVAGLEAAAAVGASTVDVKMDSKLVVEQMC 85
>gi|147844562|emb|CAN80048.1| hypothetical protein VITISV_038714 [Vitis vinifera]
Length = 980
Score = 45.4 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 4/56 (7%)
Query: 12 NHNGVGI----TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLME 63
NH+G GI TTNN+ +Y + ILGL+ AL+ G V GDS LV Q+ L+E
Sbjct: 570 NHSGFGIDQYPTTNNIVEYEACILGLETALELGIRQMEVFGDSNLVLRQIQELLVE 625
>gi|448604363|ref|ZP_21657615.1| ribonuclease H [Haloferax sulfurifontis ATCC BAA-897]
gi|445744523|gb|ELZ95999.1| ribonuclease H [Haloferax sulfurifontis ATCC BAA-897]
Length = 197
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 6 DGSLIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV-CCWLMED 64
DG + +G TTNN A+Y +L+ L A + G+ VRGDS+L+ QV W D
Sbjct: 94 DGIVAEGSQRIGETTNNRAEYEALVEALSVAEEYGYDEVDVRGDSQLIVKQVRGEWNTND 153
Query: 65 QTPGMAELCGEAKRLKDKF 83
PG+ E +A+ L F
Sbjct: 154 --PGLKERRVKARELLSTF 170
>gi|448419737|ref|ZP_21580581.1| ribonuclease H [Halosarcina pallida JCM 14848]
gi|445674651|gb|ELZ27188.1| ribonuclease H [Halosarcina pallida JCM 14848]
Length = 197
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 32/52 (61%)
Query: 6 DGSLIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
DG + +G TTNN A+Y +LI GL+ A + GF VRGDS+L+ QV
Sbjct: 94 DGIVGEGSETIGETTNNRAEYEALIRGLEAAAEFGFEEVDVRGDSELIVKQV 145
>gi|376243258|ref|YP_005134110.1| 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
[Corynebacterium diphtheriae CDCE 8392]
gi|372106500|gb|AEX72562.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
[Corynebacterium diphtheriae CDCE 8392]
Length = 377
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 35/94 (37%), Positives = 47/94 (50%), Gaps = 13/94 (13%)
Query: 4 ADDGSLIYNHNG----------VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLV 53
A G+LIYN + VG TNNVA+Y L+ GL+ A + G VR DSKLV
Sbjct: 18 AGSGTLIYNADRSQVLKEYSYVVGKATNNVAEYHGLLNGLRGAAELGVTEVSVRMDSKLV 77
Query: 54 HMQVCC-WLMEDQTPGMAELCGEAKRLKDKFLSI 86
Q+ W ++ P M EL E K++ S+
Sbjct: 78 VEQMSGRWKIKH--PDMKELALECKKVASSIGSV 109
>gi|433439806|ref|ZP_20408470.1| ribonuclease H [Haloferax sp. BAB2207]
gi|448572792|ref|ZP_21640553.1| ribonuclease H [Haloferax lucentense DSM 14919]
gi|448597014|ref|ZP_21654152.1| ribonuclease H [Haloferax alexandrinus JCM 10717]
gi|432188378|gb|ELK45576.1| ribonuclease H [Haloferax sp. BAB2207]
gi|445719564|gb|ELZ71243.1| ribonuclease H [Haloferax lucentense DSM 14919]
gi|445740895|gb|ELZ92400.1| ribonuclease H [Haloferax alexandrinus JCM 10717]
Length = 197
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 6 DGSLIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV-CCWLMED 64
DG + +G TTNN A+Y +L+ L A + G+ VRGDS+L+ QV W D
Sbjct: 94 DGIVAEGSKRIGETTNNRAEYEALVEALSVAEEYGYDEVDVRGDSQLIVKQVRGEWNTND 153
Query: 65 QTPGMAELCGEAKRLKDKF 83
PG+ E +A+ L F
Sbjct: 154 --PGLKERRVKARELLSAF 170
>gi|448624091|ref|ZP_21670164.1| ribonuclease H [Haloferax denitrificans ATCC 35960]
gi|445750058|gb|EMA01497.1| ribonuclease H [Haloferax denitrificans ATCC 35960]
Length = 197
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 6 DGSLIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV-CCWLMED 64
DG + +G TTNN A+Y +L+ L A + G+ VRGDS+L+ QV W D
Sbjct: 94 DGIVAEGSQRIGETTNNRAEYEALVEALSVAEEYGYDEVDVRGDSQLIVKQVRGEWNTND 153
Query: 65 QTPGMAELCGEAKRLKDKF 83
PG+ E +A+ L F
Sbjct: 154 --PGLKERRVKARELLSAF 170
>gi|397772844|ref|YP_006540390.1| ribonuclease H [Natrinema sp. J7-2]
gi|448340530|ref|ZP_21529501.1| ribonuclease H [Natrinema gari JCM 14663]
gi|397681937|gb|AFO56314.1| ribonuclease H [Natrinema sp. J7-2]
gi|445629963|gb|ELY83233.1| ribonuclease H [Natrinema gari JCM 14663]
Length = 197
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 32/52 (61%)
Query: 6 DGSLIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
DG + + +G +TNN A+Y +LI GL+ A G+ VRGDS+L+ QV
Sbjct: 94 DGIVAEDGETIGTSTNNQAEYEALIAGLEAARDYGYDEVHVRGDSELIVKQV 145
>gi|448543301|ref|ZP_21624870.1| ribonuclease H [Haloferax sp. ATCC BAA-646]
gi|448550187|ref|ZP_21628710.1| ribonuclease H [Haloferax sp. ATCC BAA-645]
gi|448559541|ref|ZP_21633615.1| ribonuclease H [Haloferax sp. ATCC BAA-644]
gi|445706845|gb|ELZ58718.1| ribonuclease H [Haloferax sp. ATCC BAA-646]
gi|445710931|gb|ELZ62726.1| ribonuclease H [Haloferax sp. ATCC BAA-644]
gi|445711962|gb|ELZ63748.1| ribonuclease H [Haloferax sp. ATCC BAA-645]
Length = 197
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 6 DGSLIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV-CCWLMED 64
DG + +G TTNN A+Y +L+ L A + G+ VRGDS+L+ QV W D
Sbjct: 94 DGIVAEGSKRIGETTNNRAEYEALVEALSVAEEYGYDEVDVRGDSQLIVKQVRGDWNTND 153
Query: 65 QTPGMAELCGEAKRLKDKF 83
PG+ E +A+ L F
Sbjct: 154 --PGLKERRVKARELLSAF 170
>gi|292654895|ref|YP_003534792.1| ribonuclease H-like protein [Haloferax volcanii DS2]
gi|448292887|ref|ZP_21483208.1| ribonuclease H [Haloferax volcanii DS2]
gi|291370792|gb|ADE03019.1| ribonuclease H-like protein [Haloferax volcanii DS2]
gi|445571862|gb|ELY26405.1| ribonuclease H [Haloferax volcanii DS2]
Length = 197
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 6 DGSLIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV-CCWLMED 64
DG + +G TTNN A+Y +L+ L A + G+ VRGDS+L+ QV W D
Sbjct: 94 DGIVAEGSKRIGETTNNRAEYEALVEALSVAEEYGYDEVDVRGDSQLIVKQVRGEWNTND 153
Query: 65 QTPGMAELCGEAKRLKDKF 83
PG+ E +A+ L F
Sbjct: 154 --PGLKERRVKARELLSAF 170
>gi|284165858|ref|YP_003404137.1| ribonuclease H [Haloterrigena turkmenica DSM 5511]
gi|284015513|gb|ADB61464.1| ribonuclease H [Haloterrigena turkmenica DSM 5511]
Length = 197
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 31/52 (59%)
Query: 6 DGSLIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
DG + + +G TNN A+Y +LI GLK A G+ +RGDS+L+ QV
Sbjct: 94 DGIVAEDGETIGTATNNQAEYEALIAGLKAARDYGYDEVHIRGDSELIVKQV 145
>gi|242095770|ref|XP_002438375.1| hypothetical protein SORBIDRAFT_10g015050 [Sorghum bicolor]
gi|241916598|gb|EER89742.1| hypothetical protein SORBIDRAFT_10g015050 [Sorghum bicolor]
Length = 703
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 9/69 (13%)
Query: 19 TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC----CWLMEDQTPGMAELCG 74
+NNV +Y +L GLK A++ G VRGDS+L+ QV C P M C
Sbjct: 279 ASNNVMEYEALDNGLKIAIELGVRRLDVRGDSQLIIDQVMKASNC-----HDPKMEAYCK 333
Query: 75 EAKRLKDKF 83
E +R++DKF
Sbjct: 334 EVRRVEDKF 342
>gi|448330824|ref|ZP_21520100.1| ribonuclease H [Natrinema versiforme JCM 10478]
gi|445610660|gb|ELY64429.1| ribonuclease H [Natrinema versiforme JCM 10478]
Length = 197
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 31/52 (59%)
Query: 6 DGSLIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
DG + + +G TNN A+Y +LI GL+ A G+ VRGDS+L+ QV
Sbjct: 94 DGIVAEDGETIGTATNNQAEYEALIAGLEAARDYGYDEVHVRGDSELIVKQV 145
>gi|448582205|ref|ZP_21645709.1| ribonuclease H [Haloferax gibbonsii ATCC 33959]
gi|445731853|gb|ELZ83436.1| ribonuclease H [Haloferax gibbonsii ATCC 33959]
Length = 197
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 16 VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV-CCWLMEDQTPGMAELCG 74
+G TTNN A+Y +L+ L A + G+ VRGDS+LV QV W D PG+ E
Sbjct: 104 IGETTNNRAEYEALVEALSVAEEYGYDEIDVRGDSQLVVKQVRGEWNTND--PGLKERRV 161
Query: 75 EAKRLKDKF 83
+A+ L F
Sbjct: 162 KARELLSAF 170
>gi|38234249|ref|NP_940016.1| bifunctional RNase H/acid phosphatase [Corynebacterium diphtheriae
NCTC 13129]
gi|376293655|ref|YP_005165329.1| 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
[Corynebacterium diphtheriae HC02]
gi|38200511|emb|CAE50207.1| Conserved hypothetical protein [Corynebacterium diphtheriae]
gi|372110978|gb|AEX77038.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
[Corynebacterium diphtheriae HC02]
Length = 377
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 35/94 (37%), Positives = 47/94 (50%), Gaps = 13/94 (13%)
Query: 4 ADDGSLIYNHNG----------VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLV 53
A G+LIYN + VG TNNVA+Y L+ GL+ A + G VR DSKLV
Sbjct: 18 AGSGTLIYNADRSQVLKEYSYVVGKATNNVAEYHGLLNGLRGAAELGATEVSVRMDSKLV 77
Query: 54 HMQVCC-WLMEDQTPGMAELCGEAKRLKDKFLSI 86
Q+ W ++ P M EL E K++ S+
Sbjct: 78 VEQMSGRWKIKH--PDMKELALECKKVASSIGSV 109
>gi|376254768|ref|YP_005143227.1| 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
[Corynebacterium diphtheriae PW8]
gi|372117852|gb|AEX70322.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
[Corynebacterium diphtheriae PW8]
Length = 377
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 35/94 (37%), Positives = 47/94 (50%), Gaps = 13/94 (13%)
Query: 4 ADDGSLIYNHNG----------VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLV 53
A G+LIYN + VG TNNVA+Y L+ GL+ A + G VR DSKLV
Sbjct: 18 AGSGTLIYNADRSQVLKEYSYVVGKATNNVAEYHGLLNGLRGAAELGATEVSVRMDSKLV 77
Query: 54 HMQVCC-WLMEDQTPGMAELCGEAKRLKDKFLSI 86
Q+ W ++ P M EL E K++ S+
Sbjct: 78 VEQMSGRWKIKH--PDMKELALECKKVASSIGSV 109
>gi|375293529|ref|YP_005128068.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
[Corynebacterium diphtheriae INCA 402]
gi|371583200|gb|AEX46866.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
[Corynebacterium diphtheriae INCA 402]
Length = 377
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 35/94 (37%), Positives = 47/94 (50%), Gaps = 13/94 (13%)
Query: 4 ADDGSLIYNHNG----------VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLV 53
A G+LIYN + VG TNNVA+Y L+ GL+ A + G VR DSKLV
Sbjct: 18 AGSGTLIYNADRSQVLKEYSYVVGKATNNVAEYHGLLNGLRGAAELGATEVSVRMDSKLV 77
Query: 54 HMQVCC-WLMEDQTPGMAELCGEAKRLKDKFLSI 86
Q+ W ++ P M EL E K++ S+
Sbjct: 78 VEQMSGRWKIKH--PDMKELALECKKVASSIGSV 109
>gi|375291330|ref|YP_005125870.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
[Corynebacterium diphtheriae 241]
gi|376246167|ref|YP_005136406.1| 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
[Corynebacterium diphtheriae HC01]
gi|376288171|ref|YP_005160737.1| 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
[Corynebacterium diphtheriae BH8]
gi|371581001|gb|AEX44668.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
[Corynebacterium diphtheriae 241]
gi|371585505|gb|AEX49170.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
[Corynebacterium diphtheriae BH8]
gi|372108797|gb|AEX74858.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
[Corynebacterium diphtheriae HC01]
Length = 377
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 35/94 (37%), Positives = 47/94 (50%), Gaps = 13/94 (13%)
Query: 4 ADDGSLIYNHNG----------VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLV 53
A G+LIYN + VG TNNVA+Y L+ GL+ A + G VR DSKLV
Sbjct: 18 AGSGTLIYNADRSQVLKEYSYVVGKATNNVAEYHGLLNGLRGAAELGATEVSVRMDSKLV 77
Query: 54 HMQVCC-WLMEDQTPGMAELCGEAKRLKDKFLSI 86
Q+ W ++ P M EL E K++ S+
Sbjct: 78 VEQMSGRWKIKH--PDMKELALECKKVASSIGSV 109
>gi|376285171|ref|YP_005158381.1| 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
[Corynebacterium diphtheriae 31A]
gi|371578686|gb|AEX42354.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
[Corynebacterium diphtheriae 31A]
Length = 377
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 35/94 (37%), Positives = 47/94 (50%), Gaps = 13/94 (13%)
Query: 4 ADDGSLIYNHNG----------VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLV 53
A G+LIYN + VG TNNVA+Y L+ GL+ A + G VR DSKLV
Sbjct: 18 AGSGTLIYNADRSQVLKKYSYVVGKATNNVAEYHGLLNGLRGAAELGATEVSVRMDSKLV 77
Query: 54 HMQVCC-WLMEDQTPGMAELCGEAKRLKDKFLSI 86
Q+ W ++ P M EL E K++ S+
Sbjct: 78 VEQMSGRWKIKH--PDMKELALECKKVASSIGSV 109
>gi|433590945|ref|YP_007280441.1| ribonuclease HI [Natrinema pellirubrum DSM 15624]
gi|448334478|ref|ZP_21523653.1| ribonuclease H [Natrinema pellirubrum DSM 15624]
gi|433305725|gb|AGB31537.1| ribonuclease HI [Natrinema pellirubrum DSM 15624]
gi|445619810|gb|ELY73327.1| ribonuclease H [Natrinema pellirubrum DSM 15624]
Length = 197
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 31/52 (59%)
Query: 6 DGSLIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
DG + + +G TNN A+Y +LI GL+ A G+ VRGDS+L+ QV
Sbjct: 94 DGIVAEDGETIGTATNNQAEYEALIAGLEAARDYGYDEVHVRGDSELIVKQV 145
>gi|419861224|ref|ZP_14383862.1| bifunctional RNase H/acid phosphatase [Corynebacterium diphtheriae
bv. intermedius str. NCTC 5011]
gi|387982293|gb|EIK55800.1| bifunctional RNase H/acid phosphatase [Corynebacterium diphtheriae
bv. intermedius str. NCTC 5011]
Length = 377
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 35/94 (37%), Positives = 47/94 (50%), Gaps = 13/94 (13%)
Query: 4 ADDGSLIYNHNG----------VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLV 53
A G+LIYN + VG TNNVA+Y L+ GL+ A + G VR DSKLV
Sbjct: 18 AGSGTLIYNADRSQVLKKYSYVVGKATNNVAEYHGLLNGLRGAAELGATEVSVRMDSKLV 77
Query: 54 HMQVCC-WLMEDQTPGMAELCGEAKRLKDKFLSI 86
Q+ W ++ P M EL E K++ S+
Sbjct: 78 IEQMSGRWKIKH--PDMKELALECKKVASSIGSV 109
>gi|448385420|ref|ZP_21563926.1| ribonuclease H [Haloterrigena thermotolerans DSM 11522]
gi|445656915|gb|ELZ09747.1| ribonuclease H [Haloterrigena thermotolerans DSM 11522]
Length = 197
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 31/52 (59%)
Query: 6 DGSLIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
DG + + +G TNN A+Y +LI GL+ A G+ VRGDS+L+ QV
Sbjct: 94 DGIVAEDGETIGTATNNQAEYEALIAGLEAARDYGYDEVHVRGDSELIVKQV 145
>gi|448391653|ref|ZP_21566748.1| ribonuclease H [Haloterrigena salina JCM 13891]
gi|445665065|gb|ELZ17743.1| ribonuclease H [Haloterrigena salina JCM 13891]
Length = 197
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 31/52 (59%)
Query: 6 DGSLIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
DG + + +G TNN A+Y +LI GL+ A G+ VRGDS+L+ QV
Sbjct: 94 DGIVAEDGETIGTATNNQAEYEALIAGLEAARDYGYDEVHVRGDSELIVKQV 145
>gi|448317589|ref|ZP_21507139.1| ribonuclease H [Natronococcus jeotgali DSM 18795]
gi|445602980|gb|ELY56950.1| ribonuclease H [Natronococcus jeotgali DSM 18795]
Length = 197
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 31/52 (59%)
Query: 6 DGSLIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
DG + +G TTNN A+Y +LI L+ A + G+ VRGDS+L+ QV
Sbjct: 94 DGIVAEGSERIGRTTNNRAEYEALITALEAAAEYGYGEVHVRGDSELIVKQV 145
>gi|333918915|ref|YP_004492496.1| phosphoglycerate mutase [Amycolicicoccus subflavus DQS3-9A1]
gi|333481136|gb|AEF39696.1| Phosphoglycerate mutase [Amycolicicoccus subflavus DQS3-9A1]
Length = 360
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 1 MLRADDGSLIYNH-NGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC 59
+L DD +++ +GI TNNVA+Y LI GL+ A + G VR DSKLV Q+
Sbjct: 22 VLDPDDRTVLAERKQAIGIATNNVAEYSGLIAGLEAATEVGAHEAEVRMDSKLVVEQMSG 81
Query: 60 -WLMEDQTPGMAELCGEAKRLKDKF 83
W ++ P M L A L F
Sbjct: 82 RWKVKH--PDMIPLARRAAELAQAF 104
>gi|145590536|ref|YP_001152538.1| ribonuclease H [Pyrobaculum arsenaticum DSM 13514]
gi|145282304|gb|ABP49886.1| ribonuclease H [Pyrobaculum arsenaticum DSM 13514]
Length = 199
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 17 GITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMEDQTPGMAELCGEA 76
+ TNNVA+Y ++I L+ A + G + ++R DS+LV Q+ + P +AEL E
Sbjct: 51 ALCTNNVAEYKAVIAALRRAAELGCRSVKIRSDSQLVVYQL-TGVYRVHAPHLAELLEEV 109
Query: 77 KRLKDKF 83
KR +F
Sbjct: 110 KRATSQF 116
>gi|448313766|ref|ZP_21503478.1| ribonuclease H [Natronolimnobius innermongolicus JCM 12255]
gi|445597076|gb|ELY51154.1| ribonuclease H [Natronolimnobius innermongolicus JCM 12255]
Length = 197
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (59%)
Query: 6 DGSLIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
DG + + +G TNN A+Y +LI GL+ A G+ +RGDS+L+ QV
Sbjct: 94 DGIVAEDGETIGTATNNQAEYEALIAGLEAASDYGYDEIHIRGDSELIVKQV 145
>gi|218441128|ref|YP_002379457.1| ribonuclease H [Cyanothece sp. PCC 7424]
gi|218173856|gb|ACK72589.1| ribonuclease H [Cyanothece sp. PCC 7424]
Length = 313
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 18 ITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEA 76
I TNN A+Y LI+GLK A + G V+GDS+L+ Q+ W + +P + E EA
Sbjct: 46 IATNNEAEYTGLIIGLKQAQELGIKELIVKGDSQLIINQITGKWKV--NSPHLKEFYHEA 103
Query: 77 KRLKDKFLSI 86
K+L F I
Sbjct: 104 KQLIKNFEQI 113
>gi|408828727|ref|ZP_11213617.1| bifunctional RNase H/acid phosphatase, partial [Streptomyces
somaliensis DSM 40738]
Length = 184
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 8 SLIYNHNGVGITTNNVAKYGSLILGLKYALQ-KGFFNFRVRGDSKLVHMQVCC-WLMEDQ 65
+L+ +G+ TNNVA+Y L+ GL+ A + + RVR DSKLV Q+ W + +
Sbjct: 38 ALVETAEYIGVATNNVAEYKGLLAGLRAARELAPDASVRVRMDSKLVVEQMSGRWKI--K 95
Query: 66 TPGMAELCGEAKRL 79
P M L EA R+
Sbjct: 96 HPDMKPLAAEAARI 109
>gi|448306240|ref|ZP_21496149.1| ribonuclease H [Natronorubrum bangense JCM 10635]
gi|445598654|gb|ELY52709.1| ribonuclease H [Natronorubrum bangense JCM 10635]
Length = 197
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%)
Query: 6 DGSLIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
DG + +G TTNN A+Y +LI L+ A G+ VRGDS+L+ QV
Sbjct: 94 DGIVAEGGERIGTTTNNQAEYAALISALETARDYGYDEVHVRGDSELIVKQV 145
>gi|145223479|ref|YP_001134157.1| bifunctional RNase H/acid phosphatase [Mycobacterium gilvum
PYR-GCK]
gi|315443840|ref|YP_004076719.1| fructose-2,6-bisphosphatase [Mycobacterium gilvum Spyr1]
gi|145215965|gb|ABP45369.1| Phosphoglycerate mutase [Mycobacterium gilvum PYR-GCK]
gi|315262143|gb|ADT98884.1| fructose-2,6-bisphosphatase [Mycobacterium gilvum Spyr1]
Length = 356
Score = 43.5 bits (101), Expect = 0.017, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 14 NGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAEL 72
+ +G TNNVA+Y LI GL+ A Q G VR DSKL+ Q+ W ++ P +A L
Sbjct: 38 SAIGTATNNVAEYRGLIAGLESAAQTGATEVEVRMDSKLIVEQMAGRWRVKH--PDLAAL 95
Query: 73 CGEAKRLKDKFLSI 86
+A L +F I
Sbjct: 96 HRQAADLARRFEHI 109
>gi|386386675|ref|ZP_10071794.1| bifunctional RNase H/acid phosphatase, partial [Streptomyces
tsukubaensis NRRL18488]
gi|385665871|gb|EIF89495.1| bifunctional RNase H/acid phosphatase, partial [Streptomyces
tsukubaensis NRRL18488]
Length = 167
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 16 VGITTNNVAKYGSLILGLKYALQ-KGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELC 73
+G+ TNNVA+Y LI GL+ A + RVR DSKLV Q+ W + + P M L
Sbjct: 41 IGVATNNVAEYKGLIAGLRAARDIAPDASVRVRMDSKLVVEQMSGRWKI--KHPDMKPLA 98
Query: 74 GEAKRL 79
EA R+
Sbjct: 99 AEAARI 104
>gi|448400255|ref|ZP_21571322.1| ribonuclease H [Haloterrigena limicola JCM 13563]
gi|445667795|gb|ELZ20435.1| ribonuclease H [Haloterrigena limicola JCM 13563]
Length = 197
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%)
Query: 6 DGSLIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
DG + +G TNN A+Y +LI GL+ A G+ VRGDS+L+ QV
Sbjct: 94 DGIVAEGGETIGTATNNQAEYEALIAGLEAARDYGYDEVHVRGDSELIVKQV 145
>gi|257389105|ref|YP_003178878.1| ribonuclease H [Halomicrobium mukohataei DSM 12286]
gi|257171412|gb|ACV49171.1| ribonuclease H [Halomicrobium mukohataei DSM 12286]
Length = 197
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 33/57 (57%)
Query: 1 MLRADDGSLIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
+L DDG + +G TNN A+Y +L+ L+ A GF R+RGDS+L+ QV
Sbjct: 89 VLVTDDGIVADGGERIGTATNNQAEYRALLRVLEVARDHGFDEIRLRGDSELIVKQV 145
>gi|78708485|gb|ABB47460.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 561
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 19 TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAK 77
T +NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D MA E +
Sbjct: 352 TLHNVAEYEALLHGLRIAVSLGIRRLIVRGDSQLVVNQVMKEWSCLDD--NMAAYRQEVR 409
Query: 78 RLKDKF 83
+LKDKF
Sbjct: 410 KLKDKF 415
>gi|448531797|ref|ZP_21621085.1| ribonuclease H [Halorubrum hochstenium ATCC 700873]
gi|445707002|gb|ELZ58870.1| ribonuclease H [Halorubrum hochstenium ATCC 700873]
Length = 198
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 6 DGSLIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV-CCWLMED 64
DG + +G TNN A+Y +L+ L+ A + GF VRGDS+L+ QV W D
Sbjct: 94 DGVVAEGGERIGRATNNQAEYAALVRALEAADEYGFDAVDVRGDSELIVKQVRGEWNAND 153
Query: 65 QTPGMAELCGEAKRLKDKF 83
P + E A+ L ++F
Sbjct: 154 --PELRERRVRARELLERF 170
>gi|13129430|gb|AAK13088.1|AC078839_4 Gag-Pol precursor [Oryza sativa Japonica Group]
Length = 677
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 19 TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAK 77
T +NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D MA E +
Sbjct: 352 TLHNVAEYEALLHGLRIAVSLGIRRLIVRGDSQLVVNQVMKEWSCLDD--NMAAYRQEVR 409
Query: 78 RLKDKF 83
+LKDKF
Sbjct: 410 KLKDKF 415
>gi|357019521|ref|ZP_09081774.1| bifunctional RNase H/acid phosphatase [Mycobacterium
thermoresistibile ATCC 19527]
gi|356480694|gb|EHI13809.1| bifunctional RNase H/acid phosphatase [Mycobacterium
thermoresistibile ATCC 19527]
Length = 365
Score = 42.7 bits (99), Expect = 0.024, Method: Composition-based stats.
Identities = 31/82 (37%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 4 ADDGSLIY-NHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WL 61
AD G ++ +G TNNVA+Y LI GL+ A + G VR DSKLV Q+ W
Sbjct: 27 ADSGEVLAETKQSIGRATNNVAEYRGLIAGLEQAARVGATEVEVRMDSKLVVEQMAGRWR 86
Query: 62 MEDQTPGMAELCGEAKRLKDKF 83
++ P + L +AK L +F
Sbjct: 87 VKH--PDLQPLSQQAKTLAARF 106
>gi|448561164|ref|ZP_21634516.1| ribonuclease H [Haloferax prahovense DSM 18310]
gi|445721396|gb|ELZ73064.1| ribonuclease H [Haloferax prahovense DSM 18310]
Length = 197
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 16 VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV-CCWLMEDQTPGMAE 71
+G TTNN A+Y +L+ L A + G+ VRGDS+LV QV W D PG+ E
Sbjct: 104 IGETTNNRAEYEALVEALSVAEEYGYDEVDVRGDSQLVVKQVRGEWKTND--PGLRE 158
>gi|448434667|ref|ZP_21586441.1| ribonuclease H [Halorubrum tebenquichense DSM 14210]
gi|445684663|gb|ELZ37036.1| ribonuclease H [Halorubrum tebenquichense DSM 14210]
Length = 198
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 6 DGSLIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV-CCWLMED 64
DG + +G TNN A+Y +LI L+ A + GF VRGDS+L+ QV W D
Sbjct: 94 DGVVAEGGERIGRATNNQAEYAALIRALEGADEYGFDAVDVRGDSELIVKQVRGEWNAND 153
Query: 65 QTPGMAELCGEAKRLKDKF 83
P + E A+ L ++F
Sbjct: 154 --PELRERRVRARELLERF 170
>gi|448482041|ref|ZP_21605255.1| ribonuclease H [Halorubrum arcis JCM 13916]
gi|445821443|gb|EMA71234.1| ribonuclease H [Halorubrum arcis JCM 13916]
Length = 198
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 6 DGSLIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV-CCWLMED 64
DG + +G TNN A+Y +LI L+ A + GF VRGDS+L QV W D
Sbjct: 94 DGVVAEGGERIGRATNNQAEYAALIRALEAADEYGFDAVDVRGDSQLTVKQVRGEWNAND 153
Query: 65 QTPGMAELCGEAKRLKDKF 83
P + E A+ L ++F
Sbjct: 154 --PELRERRVRARELLERF 170
>gi|448450735|ref|ZP_21592468.1| ribonuclease H [Halorubrum litoreum JCM 13561]
gi|448510575|ref|ZP_21615952.1| ribonuclease H [Halorubrum distributum JCM 9100]
gi|448522304|ref|ZP_21618427.1| ribonuclease H [Halorubrum distributum JCM 10118]
gi|445695848|gb|ELZ47947.1| ribonuclease H [Halorubrum distributum JCM 9100]
gi|445702248|gb|ELZ54206.1| ribonuclease H [Halorubrum distributum JCM 10118]
gi|445811246|gb|EMA61254.1| ribonuclease H [Halorubrum litoreum JCM 13561]
Length = 198
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 6 DGSLIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV-CCWLMED 64
DG + +G TNN A+Y +LI L+ A + GF VRGDS+L QV W D
Sbjct: 94 DGVVAEGGERIGRATNNQAEYAALIRALEAADEYGFDAVDVRGDSQLTVKQVRGEWNAND 153
Query: 65 QTPGMAELCGEAKRLKDKF 83
P + E A+ L ++F
Sbjct: 154 --PELRERRVRARELLERF 170
>gi|448425077|ref|ZP_21582706.1| ribonuclease H [Halorubrum terrestre JCM 10247]
gi|445681337|gb|ELZ33771.1| ribonuclease H [Halorubrum terrestre JCM 10247]
Length = 198
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 6 DGSLIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMED 64
DG + +G TNN A+Y +LI L+ A + GF VRGDS+L QV W D
Sbjct: 94 DGVVAEGGERIGRATNNQAEYAALIRALEAADEYGFDAVDVRGDSQLTVKQVRGEWNAND 153
Query: 65 QTPGMAELCGEAKRLKDKF 83
P + E A+ L ++F
Sbjct: 154 --PELRERRVRARELLERF 170
>gi|435848098|ref|YP_007310348.1| ribonuclease HI [Natronococcus occultus SP4]
gi|433674366|gb|AGB38558.1| ribonuclease HI [Natronococcus occultus SP4]
Length = 197
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 6 DGSLIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
DG + ++ +G TNN A+Y +LI L+ A + + VRGDS+L+ QV
Sbjct: 94 DGIVAEGNDRIGTATNNQAEYAALITALEAAAEYDYDELHVRGDSELIVKQV 145
>gi|302342840|ref|YP_003807369.1| ribonuclease H [Desulfarculus baarsii DSM 2075]
gi|301639453|gb|ADK84775.1| ribonuclease H [Desulfarculus baarsii DSM 2075]
Length = 202
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 10/86 (11%)
Query: 7 GSLIYNHNG---------VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
G++IY+ +G +G TNNVA+Y +L++GL+ AL+ G VR DS+L+ Q+
Sbjct: 89 GAVIYDQSGAQIAALSRYLGQATNNVAEYQALLMGLEAALELGVGQIDVRLDSELLVKQL 148
Query: 58 CCWLMEDQTPGMAELCGEAKRLKDKF 83
+ + P + L +AK L +F
Sbjct: 149 GGQ-YQVKAPHLKPLFQKAKALLQQF 173
>gi|313127214|ref|YP_004037484.1| ribonuclease hi [Halogeometricum borinquense DSM 11551]
gi|448288314|ref|ZP_21479514.1| ribonuclease H [Halogeometricum borinquense DSM 11551]
gi|312293579|gb|ADQ68039.1| ribonuclease HI [Halogeometricum borinquense DSM 11551]
gi|445569833|gb|ELY24403.1| ribonuclease H [Halogeometricum borinquense DSM 11551]
Length = 197
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 28/42 (66%)
Query: 16 VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
+G TTNN A+Y +LI L+ A + GF VRGDS+L+ QV
Sbjct: 104 IGETTNNRAEYEALIRALEAADEYGFDEVDVRGDSELIVKQV 145
>gi|312140237|ref|YP_004007573.1| rnase h domain phosphoglycerate/bisphosphoglycerate mutase
[Rhodococcus equi 103S]
gi|311889576|emb|CBH48893.1| RNase H domain phosphoglycerate/bisphosphoglycerate mutase
[Rhodococcus equi 103S]
Length = 377
Score = 42.7 bits (99), Expect = 0.030, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 16 VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCG 74
+G+ TNNVA+Y LI GL A G VR DSKLV Q+ W ++ P M L
Sbjct: 43 LGVATNNVAEYRGLIAGLAAARDLGAHEVDVRMDSKLVVEQMSGRWKVKH--PDMIPLAQ 100
Query: 75 EAKRLKDKFLSI 86
A+ L D F +
Sbjct: 101 RARELADGFARV 112
>gi|325677016|ref|ZP_08156687.1| phosphoglycerate mutase [Rhodococcus equi ATCC 33707]
gi|325552178|gb|EGD21869.1| phosphoglycerate mutase [Rhodococcus equi ATCC 33707]
Length = 377
Score = 42.7 bits (99), Expect = 0.030, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 16 VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCG 74
+G+ TNNVA+Y LI GL A G VR DSKLV Q+ W ++ P M L
Sbjct: 43 LGVATNNVAEYRGLIAGLAAARDLGAHEVDVRMDSKLVVEQMSGRWKVKH--PDMIPLAQ 100
Query: 75 EAKRLKDKFLSI 86
A+ L D F +
Sbjct: 101 RARELADGFARV 112
>gi|375099146|ref|ZP_09745409.1| fructose-2,6-bisphosphatase [Saccharomonospora cyanea NA-134]
gi|374659878|gb|EHR59756.1| fructose-2,6-bisphosphatase [Saccharomonospora cyanea NA-134]
Length = 382
Score = 42.4 bits (98), Expect = 0.032, Method: Composition-based stats.
Identities = 22/43 (51%), Positives = 28/43 (65%)
Query: 15 GVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
G+G+TTNNVA+Y LI GL+ A + G R DSKLV Q+
Sbjct: 41 GLGVTTNNVAEYNGLIAGLEAAAELGASTVETRLDSKLVVEQM 83
>gi|384564675|ref|ZP_10011779.1| fructose-2,6-bisphosphatase [Saccharomonospora glauca K62]
gi|384520529|gb|EIE97724.1| fructose-2,6-bisphosphatase [Saccharomonospora glauca K62]
Length = 387
Score = 42.4 bits (98), Expect = 0.033, Method: Composition-based stats.
Identities = 22/43 (51%), Positives = 28/43 (65%)
Query: 15 GVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
G+G+TTNNVA+Y LI GL+ A + G R DSKLV Q+
Sbjct: 41 GLGVTTNNVAEYNGLIAGLEAAAELGASTVEARLDSKLVVEQM 83
>gi|385679035|ref|ZP_10052963.1| fructose-2,6-bisphosphatase [Amycolatopsis sp. ATCC 39116]
Length = 357
Score = 42.4 bits (98), Expect = 0.036, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 4 ADDGSLIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLM 62
A L G+G+ TNN A+Y LI GL+ A + G VR DSKLV Q+ W +
Sbjct: 26 ATGAVLAERQEGLGVATNNFAEYSGLIAGLRAAAEAGATEVDVRMDSKLVVEQMSGRWKI 85
Query: 63 EDQTPGMAELCGEAKRLKDKFLSI 86
+ + + L +A+ L F ++
Sbjct: 86 KHE--ALKPLAEQARELAAGFAAV 107
>gi|348672898|gb|EGZ12718.1| hypothetical protein PHYSODRAFT_412243 [Phytophthora sojae]
Length = 83
Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 19 TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMEDQTPGMAELCGEAKR 78
TTNN+A+Y +L GL YAL G N V GDS ++ Q+ + P + + +++
Sbjct: 8 TTNNIAEYQALCAGLNYALTNGLTNLHVVGDSAMILAQMRR-RRPPRAPHLRSIYAQSRG 66
Query: 79 LKDK 82
+ D+
Sbjct: 67 IADR 70
>gi|448445089|ref|ZP_21590144.1| ribonuclease H [Halorubrum saccharovorum DSM 1137]
gi|445685395|gb|ELZ37749.1| ribonuclease H [Halorubrum saccharovorum DSM 1137]
Length = 198
Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%)
Query: 6 DGSLIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
DG + +G TNN A+Y +LI L+ A + GF VRGDS+L+ QV
Sbjct: 94 DGIVAEGGERIGRATNNQAEYAALIRALEAADEYGFDEIDVRGDSQLIVKQV 145
>gi|448492137|ref|ZP_21608731.1| ribonuclease H [Halorubrum californiensis DSM 19288]
gi|445691596|gb|ELZ43780.1| ribonuclease H [Halorubrum californiensis DSM 19288]
Length = 198
Score = 42.4 bits (98), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 6 DGSLIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV-CCWLMED 64
DG + +G TNN A+Y +LI L+ A + GF VRGDS+L Q+ W D
Sbjct: 94 DGVVAEGGERIGRATNNQAEYAALIRALEAADEYGFDAVDVRGDSQLTVKQIRGEWNTND 153
Query: 65 QTPGMAELCGEAKRLKDKF 83
P + E A+ L ++F
Sbjct: 154 --PELRERRVRARELLERF 170
>gi|448456849|ref|ZP_21595505.1| ribonuclease H [Halorubrum lipolyticum DSM 21995]
gi|445811446|gb|EMA61453.1| ribonuclease H [Halorubrum lipolyticum DSM 21995]
Length = 198
Score = 42.4 bits (98), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%)
Query: 6 DGSLIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
DG + +G TNN A+Y +LI L+ A + GF VRGDS+L+ QV
Sbjct: 94 DGIVAEGGERIGRATNNQAEYAALIRALEAADEYGFDEIDVRGDSQLIVKQV 145
>gi|448467480|ref|ZP_21599492.1| ribonuclease H [Halorubrum kocurii JCM 14978]
gi|445812356|gb|EMA62350.1| ribonuclease H [Halorubrum kocurii JCM 14978]
Length = 198
Score = 42.4 bits (98), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%)
Query: 6 DGSLIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
DG + +G TNN A+Y +LI L+ A + GF VRGDS+L+ QV
Sbjct: 94 DGIVAEGGERIGRATNNQAEYAALIRALEAADEYGFDEIDVRGDSQLIVKQV 145
>gi|254822754|ref|ZP_05227755.1| bifunctional RNase H/acid phosphatase [Mycobacterium intracellulare
ATCC 13950]
Length = 159
Score = 42.0 bits (97), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 9 LIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTP 67
L N +G TNNVA+Y LI GL AL+ G V DSKL+ Q+ W + + P
Sbjct: 33 LAENKQAIGRATNNVAEYRGLIAGLDDALKLGASEAAVYLDSKLLVEQMSGRWKV--KHP 90
Query: 68 GMAELCGEAKRLKDKFLSI 86
+ EL +A+ L +F I
Sbjct: 91 DLIELHAQARALAARFDRI 109
>gi|147815148|emb|CAN70173.1| hypothetical protein VITISV_041603 [Vitis vinifera]
Length = 1149
Score = 42.0 bits (97), Expect = 0.045, Method: Composition-based stats.
Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 19 TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV-CCWLME 63
TTNN+ +Y ILGLK AL+ G V GDS L+ M+ CC ++
Sbjct: 904 TTNNIVEYEVCILGLKTALEIGITQMNVLGDSNLLTMETNCCQFVQ 949
>gi|302534166|ref|ZP_07286508.1| bifunctional RNase H/acid phosphatase [Streptomyces sp. C]
gi|302443061|gb|EFL14877.1| bifunctional RNase H/acid phosphatase [Streptomyces sp. C]
Length = 180
Score = 42.0 bits (97), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 16 VGITTNNVAKYGSLILGLKYALQKGFFN-FRVRGDSKLVHMQVCC-WLMEDQTPGMAELC 73
+G+ TNNVA+Y LI GLK A + RVR DSKLV Q+ W + + P M L
Sbjct: 41 IGVATNNVAEYKGLIAGLKAAAELAPDAVVRVRMDSKLVVEQMSGRWKI--KHPDMKPLA 98
Query: 74 GEAKRL 79
EA ++
Sbjct: 99 AEAAKI 104
>gi|226360320|ref|YP_002778098.1| bifunctional RNase H/acid phosphatase [Rhodococcus opacus B4]
gi|226238805|dbj|BAH49153.1| ribonuclease H/acid phosphatase [Rhodococcus opacus B4]
Length = 368
Score = 42.0 bits (97), Expect = 0.047, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 4 ADDGSLIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLM 62
AD L +G TNNVA+Y LI GL+ A + G VR DSKLV Q+ W +
Sbjct: 31 ADGAVLAERKESLGTVTNNVAEYRGLIAGLEAAAEVGASGVDVRMDSKLVVEQMSGRWKV 90
Query: 63 EDQTPGMAELCGEAKRLKDKFLSI 86
+ P M L A L +F S+
Sbjct: 91 KH--PDMIPLQRRASELARQFNSV 112
>gi|172055036|ref|YP_001806363.1| hypothetical protein cce_4951 [Cyanothece sp. ATCC 51142]
gi|354555210|ref|ZP_08974512.1| ribonuclease H [Cyanothece sp. ATCC 51472]
gi|171701317|gb|ACB54297.1| hypothetical protein cce_4951 [Cyanothece sp. ATCC 51142]
gi|353552801|gb|EHC22195.1| ribonuclease H [Cyanothece sp. ATCC 51472]
Length = 256
Score = 42.0 bits (97), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 27/38 (71%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TNN A+YG LILGL+ AL+ + V+GDS+LV QV
Sbjct: 48 TNNQAEYGGLILGLEKALEMNISSLEVKGDSELVICQV 85
>gi|62734207|gb|AAX96316.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
Japonica Group]
gi|77548941|gb|ABA91738.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1604
Score = 42.0 bits (97), Expect = 0.050, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D T M E ++
Sbjct: 1129 SHNVAEYEALLHGLRIAISLGIRRLIVRGDSQLVVNQVMKEWSCLDDT--MTAYRQEVRK 1186
Query: 79 LKDKF 83
L+DKF
Sbjct: 1187 LEDKF 1191
>gi|348672909|gb|EGZ12729.1| hypothetical protein PHYSODRAFT_407321 [Phytophthora sojae]
Length = 95
Score = 42.0 bits (97), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 19 TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMEDQTPGMAELCGEAKR 78
TTNN+A+Y +L GL YAL G + V GDS + Q+ + P + +C + +
Sbjct: 1 TTNNIAEYRALCAGLNYALTNGLTDLHVVGDSAMNMAQM-RRRRPPRAPHLRSICAQCRG 59
Query: 79 LKDKF 83
+ D+
Sbjct: 60 IADRV 64
>gi|448302992|ref|ZP_21492942.1| ribonuclease H [Natronorubrum sulfidifaciens JCM 14089]
gi|445593999|gb|ELY48166.1| ribonuclease H [Natronorubrum sulfidifaciens JCM 14089]
Length = 197
Score = 42.0 bits (97), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%)
Query: 6 DGSLIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
DG + +G TTNN A+Y +LI L+ A G+ +RGDS+L+ QV
Sbjct: 94 DGIVAEGGERLGTTTNNQAEYAALISALETARDYGYDEVHIRGDSELIVKQV 145
>gi|258653438|ref|YP_003202594.1| phosphoglycerate mutase [Nakamurella multipartita DSM 44233]
gi|258556663|gb|ACV79605.1| Phosphoglycerate mutase [Nakamurella multipartita DSM 44233]
Length = 370
Score = 42.0 bits (97), Expect = 0.053, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 9/60 (15%)
Query: 7 GSLIYNHNG---------VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
G+++++ G +G TNNVA+YG LI GL+ AL+ G V+ DSKLV Q+
Sbjct: 28 GAVVFDDQGAVLAERAASIGRATNNVAEYGGLIAGLEAALELGAVTVAVQMDSKLVVEQM 87
>gi|456390282|gb|EMF55677.1| ribonuclease [Streptomyces bottropensis ATCC 25435]
Length = 476
Score = 41.6 bits (96), Expect = 0.056, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 8 SLIYNHNGVGITTNNVAKYGSLILGLKYALQ-KGFFNFRVRGDSKLVHMQVCC-WLMEDQ 65
+L+ +G+ TNNVA+Y LI GLK A + + RVR DSKLV Q+ W ++
Sbjct: 33 TLVETAEYIGVATNNVAEYRGLIAGLKAAYELDPEASVRVRMDSKLVVEQLSGRWKIKH- 91
Query: 66 TPGMAELCGEAKRL 79
P M L EA R+
Sbjct: 92 -PDMKPLAAEAARV 104
>gi|32480044|emb|CAE01788.1| OSJNBa0039K24.7 [Oryza sativa Japonica Group]
Length = 1818
Score = 41.6 bits (96), Expect = 0.056, Method: Composition-based stats.
Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 19 TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAK 77
T++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E +
Sbjct: 1393 TSHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDN--MTAYRQEVR 1450
Query: 78 RLKDKF 83
+L+DKF
Sbjct: 1451 KLEDKF 1456
>gi|443293202|ref|ZP_21032296.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
[Micromonospora lupini str. Lupac 08]
gi|385883060|emb|CCH20447.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
[Micromonospora lupini str. Lupac 08]
Length = 387
Score = 41.6 bits (96), Expect = 0.056, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Query: 16 VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCG 74
+G TNNVA+Y LI GL+ A + G VR DSKLV Q+C W ++ PG+ L
Sbjct: 43 LGTATNNVAEYQGLIAGLRAAAEVGAAEVDVRMDSKLVVEQMCGRWQIKH--PGLRPLAA 100
Query: 75 EAKRLKDKFLSI 86
+A L +F ++
Sbjct: 101 QAATLVGRFGAV 112
>gi|227548845|ref|ZP_03978894.1| bifunctional RNase H/acid phosphatase [Corynebacterium
lipophiloflavum DSM 44291]
gi|227079066|gb|EEI17029.1| bifunctional RNase H/acid phosphatase [Corynebacterium
lipophiloflavum DSM 44291]
Length = 368
Score = 41.6 bits (96), Expect = 0.060, Method: Composition-based stats.
Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 13/94 (13%)
Query: 4 ADDGSLIYNHNGVGI----------TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLV 53
A GS++Y +G + ++NNVA+Y L+ GL+ A + G V DSKLV
Sbjct: 18 AGSGSVVYGADGTTLAEVAYVVGQKSSNNVAEYHGLLRGLEAAREAGATEVEVYMDSKLV 77
Query: 54 HMQVCC-WLMEDQTPGMAELCGEAKRLKDKFLSI 86
Q+ W ++ P MA+L +A+ L F S+
Sbjct: 78 VEQMSGRWKIKH--PDMADLARQARSLAAGFSSV 109
>gi|54023608|ref|YP_117850.1| bifunctional RNase H/acid phosphatase [Nocardia farcinica IFM
10152]
gi|54015116|dbj|BAD56486.1| putative phosphoglycerate mutase [Nocardia farcinica IFM 10152]
Length = 406
Score = 41.6 bits (96), Expect = 0.062, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 16 VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCG 74
VGI TNNVA+Y LI GL+ A + G VR DSKLV Q+ W ++ M L
Sbjct: 43 VGIATNNVAEYRGLIAGLEAAAELGARTVDVRMDSKLVVEQMSGRWKVKH--AAMIPLAD 100
Query: 75 EAKRLKDKFLSI 86
A+RL F ++
Sbjct: 101 RARRLVAGFDAV 112
>gi|330469452|ref|YP_004407195.1| phosphoglycerate mutase [Verrucosispora maris AB-18-032]
gi|328812423|gb|AEB46595.1| phosphoglycerate mutase [Verrucosispora maris AB-18-032]
Length = 403
Score = 41.6 bits (96), Expect = 0.065, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 15 GVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELC 73
+G TNNVA+Y L+ GL A++ G VR DSKLV Q+ W ++ PG+ L
Sbjct: 42 AIGTATNNVAEYQGLLAGLTAAVELGATEVEVRMDSKLVVEQMSGRWQIKH--PGLRPLA 99
Query: 74 GEAKRL 79
+A +L
Sbjct: 100 AQAVQL 105
>gi|381164574|ref|ZP_09873804.1| fructose-2,6-bisphosphatase [Saccharomonospora azurea NA-128]
gi|418462853|ref|ZP_13033889.1| fructose-2,6-bisphosphatase [Saccharomonospora azurea SZMC 14600]
gi|359735516|gb|EHK84476.1| fructose-2,6-bisphosphatase [Saccharomonospora azurea SZMC 14600]
gi|379256479|gb|EHY90405.1| fructose-2,6-bisphosphatase [Saccharomonospora azurea NA-128]
Length = 398
Score = 41.6 bits (96), Expect = 0.069, Method: Composition-based stats.
Identities = 23/49 (46%), Positives = 29/49 (59%)
Query: 9 LIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
L +G+GI TNNVA+Y LI GL+ A + G R DSKLV Q+
Sbjct: 35 LAERQDGLGIATNNVAEYTGLIAGLEAAAELGASTVEARLDSKLVVEQM 83
>gi|385802604|ref|YP_005839004.1| ribonuclease H, type 1 [Haloquadratum walsbyi C23]
gi|339728096|emb|CCC39218.1| ribonuclease H, type 1 [Haloquadratum walsbyi C23]
Length = 198
Score = 41.6 bits (96), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 27/43 (62%)
Query: 16 VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC 58
+G TTNN A+Y +L ++ A Q GF +RGDS+L+ QV
Sbjct: 105 IGKTTNNRAEYAALERAIEMARQYGFTEIDIRGDSQLIIRQVT 147
>gi|290960926|ref|YP_003492108.1| ribonuclease [Streptomyces scabiei 87.22]
gi|260650452|emb|CBG73568.1| putative ribonuclease [Streptomyces scabiei 87.22]
Length = 492
Score = 41.6 bits (96), Expect = 0.069, Method: Composition-based stats.
Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 4/66 (6%)
Query: 16 VGITTNNVAKYGSLILGLKYALQ-KGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELC 73
+G+ TNNVA+Y LI GLK A + + RVR DSKLV Q+ W ++ P M L
Sbjct: 41 IGVATNNVAEYRGLIAGLKAAYELDPEASVRVRMDSKLVVEQLSGRWKIKH--PDMKPLA 98
Query: 74 GEAKRL 79
EA R+
Sbjct: 99 AEAARV 104
>gi|110667198|ref|YP_657009.1| ribonuclease H I [Haloquadratum walsbyi DSM 16790]
gi|109624945|emb|CAJ51357.1| ribonuclease H, type 1 [Haloquadratum walsbyi DSM 16790]
Length = 198
Score = 41.6 bits (96), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 27/43 (62%)
Query: 16 VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC 58
+G TTNN A+Y +L ++ A Q GF +RGDS+L+ QV
Sbjct: 105 IGKTTNNRAEYAALERAIEMARQYGFTEIDIRGDSQLIIRQVT 147
>gi|410479732|ref|YP_006767369.1| ribonuclease H [Leptospirillum ferriphilum ML-04]
gi|124515191|gb|EAY56702.1| putative ribonuclease H [Leptospirillum rubarum]
gi|406774984|gb|AFS54409.1| putative ribonuclease H [Leptospirillum ferriphilum ML-04]
Length = 134
Score = 41.2 bits (95), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 1 MLRADDGSLIYNHNGV-GITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC 59
+L+ +DG +I++ + TNN A+Y +LI GL+ A +G N VR DS+L+ Q+
Sbjct: 21 LLKDEDGRVIFSEGRILPPGTNNQAEYQALIAGLQAARDRGVRNLLVRADSELMIRQMTG 80
Query: 60 WLMEDQTPGMAELCGEAKRLKDKFLSI 86
+ PG+ +A L F +I
Sbjct: 81 KYRV-RNPGLLACYEQATNLSRSFDTI 106
>gi|379746935|ref|YP_005337756.1| phosphoglycerate mutase [Mycobacterium intracellulare ATCC 13950]
gi|379754209|ref|YP_005342881.1| phosphoglycerate mutase [Mycobacterium intracellulare MOTT-02]
gi|378799299|gb|AFC43435.1| phosphoglycerate mutase [Mycobacterium intracellulare ATCC 13950]
gi|378804425|gb|AFC48560.1| phosphoglycerate mutase [Mycobacterium intracellulare MOTT-02]
Length = 379
Score = 41.2 bits (95), Expect = 0.071, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 9 LIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTP 67
L+ N +G TNNVA+Y LI GL AL+ G V DSKL+ Q+ W ++ P
Sbjct: 33 LVENKQAIGRATNNVAEYRGLIAGLDDALKLGASEAAVYLDSKLLVEQMSGRWKVKH--P 90
Query: 68 GMAELCGEAKRLKDKF 83
+ EL +A+ L +F
Sbjct: 91 DLIELHAQARALAARF 106
>gi|5902445|dbj|BAA84458.1| GAG-POL precursor [Oryza sativa Japonica Group]
Length = 1032
Score = 41.2 bits (95), Expect = 0.072, Method: Composition-based stats.
Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 19 TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAK 77
T++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E +
Sbjct: 495 TSHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDN--MMAYRQEVR 552
Query: 78 RLKDKF 83
+L+DKF
Sbjct: 553 KLEDKF 558
>gi|258450521|gb|ACV72190.1| ribonuclease H [uncultured organism]
Length = 161
Score = 41.2 bits (95), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 28/42 (66%)
Query: 16 VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
+G TTNNVA+Y +L+ GL+ A G N VR DS+L+ Q+
Sbjct: 66 IGKTTNNVAEYRALLRGLERARALGVRNLEVRADSELLIRQL 107
>gi|108705936|gb|ABF93731.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1953
Score = 41.2 bits (95), Expect = 0.072, Method: Composition-based stats.
Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 19 TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAK 77
T++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E +
Sbjct: 1416 TSHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDN--MMAYRQEVR 1473
Query: 78 RLKDKF 83
+L+DKF
Sbjct: 1474 KLEDKF 1479
>gi|432339703|ref|ZP_19589323.1| bifunctional RNase H/acid phosphatase [Rhodococcus wratislaviensis
IFP 2016]
gi|430775124|gb|ELB90674.1| bifunctional RNase H/acid phosphatase [Rhodococcus wratislaviensis
IFP 2016]
Length = 368
Score = 41.2 bits (95), Expect = 0.077, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 16 VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCG 74
+GI TNNVA+Y LI GL A + G VR DSKLV Q+ W ++ P M L
Sbjct: 43 LGIATNNVAEYRGLIAGLDAAAELGASEVDVRMDSKLVVEQMSGRWKVKH--PDMIPLQR 100
Query: 75 EAKRLKDKFLSI 86
+A L +F S+
Sbjct: 101 QASTLARQFDSV 112
>gi|397730525|ref|ZP_10497284.1| RNase HI {Corynebacterium glutamicum [Rhodococcus sp. JVH1]
gi|396933917|gb|EJJ01068.1| RNase HI {Corynebacterium glutamicum [Rhodococcus sp. JVH1]
Length = 368
Score = 41.2 bits (95), Expect = 0.077, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 16 VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCG 74
+GI TNNVA+Y LI GL A + G VR DSKLV Q+ W ++ P M L
Sbjct: 43 LGIATNNVAEYRGLIAGLDAAAELGASEVDVRMDSKLVVEQMSGRWKVKH--PDMIPLQR 100
Query: 75 EAKRLKDKFLSI 86
+A L +F S+
Sbjct: 101 QASTLARQFDSV 112
>gi|419961618|ref|ZP_14477624.1| bifunctional RNase H/acid phosphatase [Rhodococcus opacus M213]
gi|414573002|gb|EKT83689.1| bifunctional RNase H/acid phosphatase [Rhodococcus opacus M213]
Length = 368
Score = 41.2 bits (95), Expect = 0.077, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 16 VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCG 74
+GI TNNVA+Y LI GL A + G VR DSKLV Q+ W ++ P M L
Sbjct: 43 LGIATNNVAEYRGLIAGLDAAAELGASEVDVRMDSKLVVEQMSGRWKVKH--PDMIPLQR 100
Query: 75 EAKRLKDKFLSI 86
+A L +F S+
Sbjct: 101 QASTLARQFDSV 112
>gi|384104743|ref|ZP_10005681.1| bifunctional RNase H/acid phosphatase [Rhodococcus imtechensis
RKJ300]
gi|383837826|gb|EID77223.1| bifunctional RNase H/acid phosphatase [Rhodococcus imtechensis
RKJ300]
Length = 368
Score = 41.2 bits (95), Expect = 0.077, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 16 VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCG 74
+GI TNNVA+Y LI GL A + G VR DSKLV Q+ W ++ P M L
Sbjct: 43 LGIATNNVAEYRGLIAGLDAAAELGASEVDVRMDSKLVVEQMSGRWKVKH--PDMIPLQR 100
Query: 75 EAKRLKDKFLSI 86
+A L +F S+
Sbjct: 101 QASTLARQFDSV 112
>gi|424858491|ref|ZP_18282523.1| phosphoglycerate mutase [Rhodococcus opacus PD630]
gi|356662178|gb|EHI42477.1| phosphoglycerate mutase [Rhodococcus opacus PD630]
Length = 368
Score = 41.2 bits (95), Expect = 0.077, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 16 VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCG 74
+GI TNNVA+Y LI GL A + G VR DSKLV Q+ W ++ P M L
Sbjct: 43 LGIATNNVAEYRGLIAGLDAAAELGASEVDVRMDSKLVVEQMSGRWKVKH--PDMIPLQR 100
Query: 75 EAKRLKDKFLSI 86
+A L +F S+
Sbjct: 101 QASTLARQFDSV 112
>gi|305681140|ref|ZP_07403947.1| ribonuclease HI [Corynebacterium matruchotii ATCC 14266]
gi|305659345|gb|EFM48845.1| ribonuclease HI [Corynebacterium matruchotii ATCC 14266]
Length = 401
Score = 41.2 bits (95), Expect = 0.077, Method: Composition-based stats.
Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 13/87 (14%)
Query: 4 ADDGSLIYNHNG----------VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLV 53
A G++IY +G VG TNNVA+Y +L GL A Q G + VR DSKLV
Sbjct: 18 AGSGTVIYEADGTTVVRKLAYVVGTATNNVAEYHALYNGLCVAQQLGATDISVRMDSKLV 77
Query: 54 HMQVCC-WLMEDQTPGMAELCGEAKRL 79
Q+ W ++ P M EL + +++
Sbjct: 78 VEQMSGRWKIKH--PDMRELALKCQKI 102
>gi|225021833|ref|ZP_03711025.1| hypothetical protein CORMATOL_01864 [Corynebacterium matruchotii
ATCC 33806]
gi|224945381|gb|EEG26590.1| hypothetical protein CORMATOL_01864 [Corynebacterium matruchotii
ATCC 33806]
Length = 401
Score = 41.2 bits (95), Expect = 0.077, Method: Composition-based stats.
Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 13/87 (14%)
Query: 4 ADDGSLIYNHNG----------VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLV 53
A G++IY +G VG TNNVA+Y +L GL A Q G + VR DSKLV
Sbjct: 18 AGSGTVIYEADGTTVVRKLAYVVGTATNNVAEYHALYNGLCVAQQLGATDISVRMDSKLV 77
Query: 54 HMQVCC-WLMEDQTPGMAELCGEAKRL 79
Q+ W ++ P M EL + +++
Sbjct: 78 VEQMSGRWKIKH--PDMRELALKCQKI 102
>gi|111018194|ref|YP_701166.1| bifunctional RNase H/acid phosphatase [Rhodococcus jostii RHA1]
gi|110817724|gb|ABG93008.1| probable alpha-ribazole phosphatase [Rhodococcus jostii RHA1]
Length = 368
Score = 41.2 bits (95), Expect = 0.077, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 16 VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCG 74
+GI TNNVA+Y LI GL A + G VR DSKLV Q+ W ++ P M L
Sbjct: 43 LGIATNNVAEYRGLIAGLDAAAELGASEVDVRMDSKLVVEQMSGRWKVKH--PDMIPLQR 100
Query: 75 EAKRLKDKFLSI 86
+A L +F S+
Sbjct: 101 QASTLARQFDSV 112
>gi|257054785|ref|YP_003132617.1| fructose-2,6-bisphosphatase [Saccharomonospora viridis DSM 43017]
gi|256584657|gb|ACU95790.1| fructose-2,6-bisphosphatase [Saccharomonospora viridis DSM 43017]
Length = 383
Score = 41.2 bits (95), Expect = 0.079, Method: Composition-based stats.
Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 5 DDGSLIYN-HNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
D G ++ G+G+TTNNVA+Y LI GL+ A + G R DSKLV Q+
Sbjct: 30 DSGDVLAERQEGLGVTTNNVAEYRGLIAGLEAAAELGASAVEARLDSKLVVEQM 83
>gi|225873970|ref|YP_002755429.1| Ribonuclease HI [Acidobacterium capsulatum ATCC 51196]
gi|225794363|gb|ACO34453.1| Ribonuclease HI [Acidobacterium capsulatum ATCC 51196]
Length = 221
Score = 41.2 bits (95), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 16 VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMEDQTPGMAELCGE 75
+G+ TNNVA+Y L+ L++AL++G RV DS+L+ Q+ + +P + L E
Sbjct: 47 LGVKTNNVAEYSGLLAALEFALEEGHPCLRVVADSELMVKQMQGKYRVN-SPDLRPLYDE 105
Query: 76 AKR 78
AKR
Sbjct: 106 AKR 108
>gi|448476738|ref|ZP_21603673.1| ribonuclease H [Halorubrum aidingense JCM 13560]
gi|445815189|gb|EMA65121.1| ribonuclease H [Halorubrum aidingense JCM 13560]
Length = 198
Score = 41.2 bits (95), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%)
Query: 6 DGSLIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
DG + +G TNN A+Y +LI L+ A + GF VRGDS+L+ QV
Sbjct: 94 DGIVAEGGERIGRVTNNQAEYAALIRALEAADEYGFDEIDVRGDSELIVKQV 145
>gi|14091854|gb|AAK53857.1|AC016781_11 Putative retroelement [Oryza sativa Japonica Group]
gi|108709345|gb|ABF97140.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1541
Score = 41.2 bits (95), Expect = 0.083, Method: Composition-based stats.
Identities = 34/102 (33%), Positives = 44/102 (43%), Gaps = 24/102 (23%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G RV
Sbjct: 955 DGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLRV 1014
Query: 47 RGDSKLVHMQVCCWLMEDQT--PGMAELCGEAKRLKDKFLSI 86
GDS+LV QVC E Q P M + +R++ F I
Sbjct: 1015 LGDSQLVVNQVC---KEYQCSDPQMDAYVRQVRRMERHFDGI 1053
>gi|40538890|gb|AAR87147.1| putative polyprotein [Oryza sativa Japonica Group]
gi|50838974|gb|AAT81735.1| RNase H domain containing protein [Oryza sativa Japonica Group]
gi|108708966|gb|ABF96761.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1227
Score = 41.2 bits (95), Expect = 0.086, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GLK A+ G VRGDS+LV QV W D M E ++
Sbjct: 881 SHNVAEYEALLRGLKIAISLGIRRLIVRGDSQLVVNQVMKEWSCLDDN--MTAYRHEVRK 938
Query: 79 LKDKF 83
L+DKF
Sbjct: 939 LEDKF 943
>gi|448689534|ref|ZP_21695118.1| ribonuclease H [Haloarcula japonica DSM 6131]
gi|445777805|gb|EMA28765.1| ribonuclease H [Haloarcula japonica DSM 6131]
Length = 198
Score = 41.2 bits (95), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 32/57 (56%)
Query: 1 MLRADDGSLIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
+L D G + +G TNN A+Y +LI ++ A GF + +RGDS+L+ QV
Sbjct: 90 VLVDDSGIVTEGGETIGTATNNQAEYKALIRAVEVARDYGFDDVHIRGDSELIVKQV 146
>gi|379707921|ref|YP_005263126.1| putative phosphoglycerate mutase [Nocardia cyriacigeorgica GUH-2]
gi|374845420|emb|CCF62486.1| Putative phosphoglycerate mutase [Nocardia cyriacigeorgica GUH-2]
Length = 451
Score = 40.8 bits (94), Expect = 0.095, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 16 VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCG 74
+G+ TNNVA+Y LI GL+ A + G VR DSKLV Q+ W ++ M L
Sbjct: 44 LGVATNNVAEYRGLIAGLEAAAELGAREVSVRMDSKLVVEQMSGRWKVKH--AAMIPLAD 101
Query: 75 EAKRLKDKF 83
AKRL F
Sbjct: 102 RAKRLVAGF 110
>gi|322369393|ref|ZP_08043958.1| ribonuclease H [Haladaptatus paucihalophilus DX253]
gi|320551125|gb|EFW92774.1| ribonuclease H [Haladaptatus paucihalophilus DX253]
Length = 197
Score = 40.8 bits (94), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 16 VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC-CW 60
+G TNN A+Y +LI GL+ A GF + V+GDS+L+ QV W
Sbjct: 104 IGRATNNQAEYEALIEGLETARDYGFDSVDVKGDSQLIVKQVTGAW 149
>gi|448322504|ref|ZP_21511974.1| ribonuclease H [Natronococcus amylolyticus DSM 10524]
gi|445601262|gb|ELY55251.1| ribonuclease H [Natronococcus amylolyticus DSM 10524]
Length = 197
Score = 40.8 bits (94), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 16 VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
+G TTNN A+Y +LI L+ A + G+ RGDS+L+ QV
Sbjct: 104 IGRTTNNQAEYTALITALEAAEEYGYGEVHARGDSELIVKQV 145
>gi|363423455|ref|ZP_09311520.1| bifunctional RNase H/acid phosphatase [Rhodococcus pyridinivorans
AK37]
gi|359731704|gb|EHK80740.1| bifunctional RNase H/acid phosphatase [Rhodococcus pyridinivorans
AK37]
Length = 385
Score = 40.8 bits (94), Expect = 0.10, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 16 VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCG 74
+G TNNVA+Y LI GL A + G VR DSKLV Q+ W ++ M L
Sbjct: 41 IGRATNNVAEYKGLIAGLTAAAELGADEVHVRMDSKLVVEQMSGRWQVKHAD--MIPLAA 98
Query: 75 EAKRLKDKFLSI 86
+A+ L +F S+
Sbjct: 99 QARELAGRFRSV 110
>gi|448346311|ref|ZP_21535197.1| ribonuclease H [Natrinema altunense JCM 12890]
gi|445632900|gb|ELY86106.1| ribonuclease H [Natrinema altunense JCM 12890]
Length = 197
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%)
Query: 6 DGSLIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
DG + +G TNN A+Y +LI GL+ A + VRGDS+L+ QV
Sbjct: 94 DGIVAEGGETIGTATNNQAEYEALITGLEAARDYDYDEVHVRGDSELIVKQV 145
>gi|296119751|ref|ZP_06838305.1| phosphoglycerate mutase family protein [Corynebacterium
ammoniagenes DSM 20306]
gi|295966905|gb|EFG80176.1| phosphoglycerate mutase family protein [Corynebacterium
ammoniagenes DSM 20306]
Length = 392
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 14/94 (14%)
Query: 4 ADDGSLIYNHNGVGI-----------TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKL 52
A G++IY +G I +TNNVA+Y L+ G++ A + G DSKL
Sbjct: 21 AGSGTVIYAADGSTILDEIVYVVGKKSTNNVAEYHGLLRGVERAAELGATEVEFYMDSKL 80
Query: 53 VHMQVCC-WLMEDQTPGMAELCGEAKRLKDKFLS 85
V Q+ W + + P M L EAK++ +KF S
Sbjct: 81 VVEQINGRWKI--KHPDMQRLAVEAKKIINKFES 112
>gi|54287556|gb|AAV31300.1| putative polyprotein [Oryza sativa Japonica Group]
gi|54291739|gb|AAV32108.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1988
Score = 40.8 bits (94), Expect = 0.10, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E +R
Sbjct: 1452 SHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDN--MMAYRQEVRR 1509
Query: 79 LKDKF 83
L+DKF
Sbjct: 1510 LEDKF 1514
>gi|448679145|ref|ZP_21689982.1| ribonuclease H [Haloarcula argentinensis DSM 12282]
gi|445771243|gb|EMA22300.1| ribonuclease H [Haloarcula argentinensis DSM 12282]
Length = 198
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 32/57 (56%)
Query: 1 MLRADDGSLIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
+L D G + +G TNN A+Y +LI ++ A GF + +RGDS+L+ QV
Sbjct: 90 VLVDDSGIVTEGGETIGTATNNQAEYRALIRAIEVARDYGFDDVHIRGDSELIVKQV 146
>gi|383828784|ref|ZP_09983873.1| fructose-2,6-bisphosphatase [Saccharomonospora xinjiangensis
XJ-54]
gi|383461437|gb|EID53527.1| fructose-2,6-bisphosphatase [Saccharomonospora xinjiangensis
XJ-54]
Length = 382
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 9 LIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
L +G+G+ TNNVA+Y LI GL+ A + G R DSKLV Q+
Sbjct: 35 LAERQDGLGVATNNVAEYTGLIAGLEAAAELGASTVEARLDSKLVVEQM 83
>gi|344210851|ref|YP_004795171.1| ribonuclease H-like protein [Haloarcula hispanica ATCC 33960]
gi|343782206|gb|AEM56183.1| ribonuclease H-like protein [Haloarcula hispanica ATCC 33960]
Length = 198
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 32/57 (56%)
Query: 1 MLRADDGSLIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
+L D G + +G TNN A+Y +LI ++ A GF + +RGDS+L+ QV
Sbjct: 90 VLVDDSGIVTEGGETIGTATNNQAEYKALIRAVEVARDYGFDDVHIRGDSELIVKQV 146
>gi|294460894|gb|ADE76020.1| unknown [Picea sitchensis]
Length = 242
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 27/38 (71%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TNNVA+Y +LI GL++AL G + + GDS+L+ QV
Sbjct: 64 TNNVAEYKALIAGLQHALDHGITSIQAYGDSELICKQV 101
>gi|383823283|ref|ZP_09978488.1| bifunctional RNase H/acid phosphatase [Mycobacterium xenopi
RIVM700367]
gi|383339608|gb|EID17943.1| bifunctional RNase H/acid phosphatase [Mycobacterium xenopi
RIVM700367]
Length = 369
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 30/76 (39%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 9 LIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTP 67
L + +G TNNVA+Y LI GL A + G + V DSKLV Q+ W + + P
Sbjct: 33 LAESKQAIGRATNNVAEYRGLIAGLDEAAKVGATDVTVLMDSKLVVEQMSGRW--QVKHP 90
Query: 68 GMAELCGEAKRLKDKF 83
+AEL A+ L KF
Sbjct: 91 DIAELYKRAQALASKF 106
>gi|448634470|ref|ZP_21674868.1| ribonuclease H [Haloarcula vallismortis ATCC 29715]
gi|445749443|gb|EMA00888.1| ribonuclease H [Haloarcula vallismortis ATCC 29715]
Length = 198
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 32/57 (56%)
Query: 1 MLRADDGSLIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
+L D G + +G TNN A+Y +LI ++ A GF + +RGDS+L+ QV
Sbjct: 90 VLVDDSGIVTEGGETIGTATNNQAEYKALIRAIEVARNYGFDDVHIRGDSELIVKQV 146
>gi|227543054|ref|ZP_03973103.1| bifunctional RNase H/acid phosphatase [Corynebacterium
glucuronolyticum ATCC 51866]
gi|227181276|gb|EEI62248.1| bifunctional RNase H/acid phosphatase [Corynebacterium
glucuronolyticum ATCC 51866]
Length = 388
Score = 40.8 bits (94), Expect = 0.12, Method: Composition-based stats.
Identities = 27/63 (42%), Positives = 38/63 (60%), Gaps = 9/63 (14%)
Query: 4 ADDGSLIYNHNG---------VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVH 54
A GS++ + +G VG TTNNVA+Y +LI GL+ AL+ G + +V DSKLV
Sbjct: 19 AGSGSVVKDSHGNELRALSHFVGKTTNNVAEYQALINGLRAALELGATHCQVFMDSKLVV 78
Query: 55 MQV 57
Q+
Sbjct: 79 EQM 81
>gi|227488442|ref|ZP_03918758.1| bifunctional RNase H/acid phosphatase [Corynebacterium
glucuronolyticum ATCC 51867]
gi|227091656|gb|EEI26968.1| bifunctional RNase H/acid phosphatase [Corynebacterium
glucuronolyticum ATCC 51867]
Length = 388
Score = 40.8 bits (94), Expect = 0.12, Method: Composition-based stats.
Identities = 27/63 (42%), Positives = 38/63 (60%), Gaps = 9/63 (14%)
Query: 4 ADDGSLIYNHNG---------VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVH 54
A GS++ + +G VG TTNNVA+Y +LI GL+ AL+ G + +V DSKLV
Sbjct: 19 AGSGSVVKDSHGNELRALSHFVGKTTNNVAEYQALINGLRAALELGATHCQVFMDSKLVV 78
Query: 55 MQV 57
Q+
Sbjct: 79 EQM 81
>gi|327399396|ref|YP_004340265.1| ribonuclease H [Hippea maritima DSM 10411]
gi|327182025|gb|AEA34206.1| ribonuclease H [Hippea maritima DSM 10411]
Length = 177
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 16 VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC-CWLMEDQTPGMAELCG 74
+GI TNNVA+Y +LI GLK + G V DS+LV Q+ + ++D+ + L
Sbjct: 84 IGIATNNVAEYSALIRGLKRLKELGVKKVNVFSDSELVVKQLKGIYRVKDKN--LKTLYN 141
Query: 75 EAKRLKDKF 83
E RL +KF
Sbjct: 142 EVLRLSNKF 150
>gi|257052283|ref|YP_003130116.1| ribonuclease H [Halorhabdus utahensis DSM 12940]
gi|256691046|gb|ACV11383.1| ribonuclease H [Halorhabdus utahensis DSM 12940]
Length = 198
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 31/57 (54%)
Query: 1 MLRADDGSLIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
+L D G + +G TTNN A+Y +LI L+ A GF + VR DS+L QV
Sbjct: 90 ILTGDGGIVTEGGKRIGSTTNNRAEYEALIHALEIAADYGFDSVEVRSDSELAVRQV 146
>gi|108708760|gb|ABF96555.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1659
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++N+A+Y +L+ GL+ A+ G VRGDS+LV QV W +D M E ++
Sbjct: 1139 SHNMAEYEALLHGLRIAISLGIRRLIVRGDSQLVVNQVMKEWSCQDDN--MTAYRQEVRK 1196
Query: 79 LKDKF 83
L+DKF
Sbjct: 1197 LEDKF 1201
>gi|37991853|gb|AAR06299.1| putative gag-pol protein [Oryza sativa Japonica Group]
Length = 1653
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++N+A+Y +L+ GL+ A+ G VRGDS+LV QV W +D M E ++
Sbjct: 1139 SHNMAEYEALLHGLRIAISLGIRRLIVRGDSQLVVNQVMKEWSCQDDN--MTAYRQEVRK 1196
Query: 79 LKDKF 83
L+DKF
Sbjct: 1197 LEDKF 1201
>gi|55379866|ref|YP_137716.1| ribonuclease H-like protein [Haloarcula marismortui ATCC 43049]
gi|448641109|ref|ZP_21677896.1| ribonuclease H [Haloarcula sinaiiensis ATCC 33800]
gi|55232591|gb|AAV48010.1| ribonuclease H-like protein [Haloarcula marismortui ATCC 43049]
gi|445761634|gb|EMA12882.1| ribonuclease H [Haloarcula sinaiiensis ATCC 33800]
Length = 198
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 32/57 (56%)
Query: 1 MLRADDGSLIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
+L D G + +G TNN A+Y +LI ++ A GF + +RGDS+L+ QV
Sbjct: 90 VLVNDSGIVTEGGETIGTATNNQAEYKALIRAVEVARDYGFDDVHIRGDSELIVKQV 146
>gi|448337168|ref|ZP_21526250.1| ribonuclease H [Natrinema pallidum DSM 3751]
gi|445626514|gb|ELY79857.1| ribonuclease H [Natrinema pallidum DSM 3751]
Length = 197
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%)
Query: 6 DGSLIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
DG + +G TNN A+Y +LI GL+ A + VRGDS+L+ QV
Sbjct: 94 DGIVAEGGETIGTATNNQAEYEALITGLEAARDYDYDEVHVRGDSELIVKQV 145
>gi|448668045|ref|ZP_21686288.1| ribonuclease H [Haloarcula amylolytica JCM 13557]
gi|445768703|gb|EMA19782.1| ribonuclease H [Haloarcula amylolytica JCM 13557]
Length = 198
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 32/57 (56%)
Query: 1 MLRADDGSLIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
+L D G + +G TNN A+Y +LI ++ A GF + +RGDS+L+ QV
Sbjct: 90 VLVDDSGIVAEGGETIGTATNNQAEYKALIRAVEVARDYGFDDVHIRGDSELIVKQV 146
>gi|448654581|ref|ZP_21681507.1| ribonuclease H [Haloarcula californiae ATCC 33799]
gi|445766429|gb|EMA17556.1| ribonuclease H [Haloarcula californiae ATCC 33799]
Length = 198
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 32/57 (56%)
Query: 1 MLRADDGSLIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
+L D G + +G TNN A+Y +LI ++ A GF + +RGDS+L+ QV
Sbjct: 90 VLVNDSGIVTEGGETIGTATNNQAEYKALIRAVEVARDYGFDDVHIRGDSELIIKQV 146
>gi|40538963|gb|AAR87220.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
Japonica Group]
gi|50582686|gb|AAT78756.1| putative retrotansposon gag protein [Oryza sativa Japonica Group]
gi|108709732|gb|ABF97527.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1389
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G + VRGDS+LV QV W D M E ++
Sbjct: 1139 SHNVAEYEALLHGLRIAISLGIWRLIVRGDSQLVVNQVMKEWSCLDDN--MTAYRQEVRK 1196
Query: 79 LKDKF 83
L+D+F
Sbjct: 1197 LEDRF 1201
>gi|296166119|ref|ZP_06848564.1| phosphoglycerate mutase [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295898528|gb|EFG78089.1| phosphoglycerate mutase [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length = 364
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 8 SLIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQT 66
+L +G TNNVA+Y L+ GL AL+ G V DSKL+ Q+ W ++
Sbjct: 32 ALAETKQAIGHATNNVAEYRGLLAGLDDALRVGATEAAVFLDSKLLVEQMSGRWKVKH-- 89
Query: 67 PGMAELCGEAKRLKDKF 83
P + EL G+A++L +F
Sbjct: 90 PDLVELHGQARKLAARF 106
>gi|288930955|ref|YP_003435015.1| ribonuclease H [Ferroglobus placidus DSM 10642]
gi|288893203|gb|ADC64740.1| ribonuclease H [Ferroglobus placidus DSM 10642]
Length = 210
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMEDQTPGMAELCGEAKRL 79
TNN+A+Y +LI GL+ AL+ G VRGDS+L Q+ + ++P + L A L
Sbjct: 45 TNNIAEYTALIRGLEKALELGIDELIVRGDSQLAIYQMNG-VYAVKSPNIIPLWQRAMEL 103
Query: 80 KDKFLSI 86
KF I
Sbjct: 104 AGKFRKI 110
>gi|425460773|ref|ZP_18840254.1| Genome sequencing data, contig C320 [Microcystis aeruginosa PCC
9808]
gi|389826515|emb|CCI22922.1| Genome sequencing data, contig C320 [Microcystis aeruginosa PCC
9808]
Length = 279
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 18 ITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
I TNN A+Y LI+GL+ A + G + +RGDS+LV QV
Sbjct: 49 IATNNEAEYTGLIIGLEKAQELGLKSLEIRGDSQLVINQV 88
>gi|425454893|ref|ZP_18834618.1| Ribonuclease H like [Microcystis aeruginosa PCC 9807]
gi|389804308|emb|CCI16811.1| Ribonuclease H like [Microcystis aeruginosa PCC 9807]
Length = 279
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 18 ITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
I TNN A+Y LI+GL+ A + G + +RGDS+LV QV
Sbjct: 49 IATNNEAEYTGLIIGLEKAQELGLKSLEIRGDSQLVINQV 88
>gi|422301806|ref|ZP_16389171.1| Ribonuclease H like [Microcystis aeruginosa PCC 9806]
gi|389789176|emb|CCI14829.1| Ribonuclease H like [Microcystis aeruginosa PCC 9806]
Length = 279
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 18 ITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
I TNN A+Y LI+GL+ A + G + +RGDS+LV QV
Sbjct: 49 IATNNEAEYTGLIIGLEKAQELGLKSLEIRGDSQLVINQV 88
>gi|425452493|ref|ZP_18832310.1| Genome sequencing data, contig C320 [Microcystis aeruginosa PCC
7941]
gi|389765698|emb|CCI08487.1| Genome sequencing data, contig C320 [Microcystis aeruginosa PCC
7941]
Length = 279
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 18 ITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
I TNN A+Y LI+GL+ A + G + +RGDS+LV QV
Sbjct: 49 IATNNEAEYTGLIIGLEKAQELGLKSLEIRGDSQLVINQV 88
>gi|425443694|ref|ZP_18823765.1| Ribonuclease H like [Microcystis aeruginosa PCC 9443]
gi|389735879|emb|CCI00690.1| Ribonuclease H like [Microcystis aeruginosa PCC 9443]
Length = 279
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 18 ITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
I TNN A+Y LI+GL+ A + G + +RGDS+LV QV
Sbjct: 49 IATNNEAEYTGLIIGLEKAQELGLKSLEIRGDSQLVINQV 88
>gi|443659661|ref|ZP_21132410.1| RNase H family protein [Microcystis aeruginosa DIANCHI905]
gi|159029413|emb|CAO90789.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|443332679|gb|ELS47275.1| RNase H family protein [Microcystis aeruginosa DIANCHI905]
Length = 283
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 18 ITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
I TNN A+Y LI+GL+ A + G + +RGDS+LV QV
Sbjct: 53 IATNNEAEYTGLIIGLEKAQELGLKSLEIRGDSQLVINQV 92
>gi|448737145|ref|ZP_21719197.1| ribonuclease H [Halococcus thailandensis JCM 13552]
gi|445804358|gb|EMA54615.1| ribonuclease H [Halococcus thailandensis JCM 13552]
Length = 196
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 6 DGSLIYNHNG--VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV-CCWLM 62
D S I G VG TTNN A+Y +L L+ A GF +RGDS+LV QV W
Sbjct: 92 DSSGIVAEGGERVGETTNNRAEYDALTRVLERAADYGFDTVELRGDSQLVVEQVRGAWQT 151
Query: 63 ED 64
D
Sbjct: 152 ND 153
>gi|120404586|ref|YP_954415.1| bifunctional RNase H/acid phosphatase [Mycobacterium vanbaalenii
PYR-1]
gi|119957404|gb|ABM14409.1| Phosphoglycerate mutase [Mycobacterium vanbaalenii PYR-1]
Length = 369
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 14 NGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAEL 72
+ +G TNNVA+Y LI GL+ A + G V DSKLV Q+ W + + P +A L
Sbjct: 38 SAIGTATNNVAEYRGLIAGLEAAAELGATEVEVLMDSKLVVEQMSGRWRV--RHPSLAPL 95
Query: 73 CGEAKRLKDKF 83
+A+ L+ +F
Sbjct: 96 HQQARDLERRF 106
>gi|38346729|emb|CAE04292.2| OSJNBa0083I11.2 [Oryza sativa Japonica Group]
gi|38346950|emb|CAE04811.2| OSJNBb0022P19.6 [Oryza sativa Japonica Group]
Length = 1111
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 29/100 (29%), Positives = 43/100 (43%), Gaps = 19/100 (19%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 635 DGSLSLQGTGAGVTLTSLSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 694
Query: 47 RGDSKLVHMQVCCWLMEDQTPGMAELCGEAKRLKDKFLSI 86
GDS+LV Q+ +L + P E +R+ +++ I
Sbjct: 695 LGDSQLVVNQIQAYLTDKTLPEDREGSERVQRISKRYVLI 734
>gi|62733846|gb|AAX95955.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
Japonica Group]
gi|77550301|gb|ABA93098.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1731
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 1253 SHNVAEYEALLHGLRIAISLGIQRLIVRGDSQLVVNQVMKEWSCLDDN--MTANRQEVRK 1310
Query: 79 LKDKF 83
LKDKF
Sbjct: 1311 LKDKF 1315
>gi|375093749|ref|ZP_09740014.1| fructose-2,6-bisphosphatase [Saccharomonospora marina XMU15]
gi|374654482|gb|EHR49315.1| fructose-2,6-bisphosphatase [Saccharomonospora marina XMU15]
Length = 389
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 9 LIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
L G+G+ TNNVA+Y +LI GL+ A + G V+ DSKLV Q+
Sbjct: 35 LAERQEGLGVATNNVAEYRALIAGLEAAARTGATAVDVKMDSKLVVEQM 83
>gi|348668072|gb|EGZ07896.1| hypothetical protein PHYSODRAFT_527265 [Phytophthora sojae]
Length = 148
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 7/72 (9%)
Query: 16 VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMEDQTP---GMAEL 72
V TTNNVA+Y +L+ GL+Y++Q + GDS L+ Q L + + P + L
Sbjct: 4 VSKTTNNVAEYRALLNGLRYSVQHSMVGLHIVGDSNLILTQ----LQKRRVPRARHLQGL 59
Query: 73 CGEAKRLKDKFL 84
G+ + L D+ +
Sbjct: 60 YGQCRVLADRLM 71
>gi|374309432|ref|YP_005055862.1| ribonuclease H [Granulicella mallensis MP5ACTX8]
gi|358751442|gb|AEU34832.1| ribonuclease H [Granulicella mallensis MP5ACTX8]
Length = 258
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 10/81 (12%)
Query: 7 GSLIYNHNGV---------GITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
G+LI + G+ GI TNN A+Y L+ L++AL G+ N RV DS+L+ Q+
Sbjct: 63 GALIQDEAGLVLAELSEFLGIRTNNYAEYSGLLGCLQWALDNGYKNLRVVSDSELMVKQI 122
Query: 58 CCWLMEDQTPGMAELCGEAKR 78
+ +P + L EA+R
Sbjct: 123 QG-KYKVNSPDLRPLWEEARR 142
>gi|332705263|ref|ZP_08425344.1| riibonuclease HI [Moorea producens 3L]
gi|332356006|gb|EGJ35465.1| riibonuclease HI [Moorea producens 3L]
Length = 286
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 3/68 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV-CCWLMEDQTPGMAELCGEAKR 78
TNN A+Y ILGL+ AL+ G ++GDS+LV Q+ W + +TP + L +AK
Sbjct: 56 TNNEAEYNGAILGLEKALEIGAGQVVLKGDSQLVINQLKGTWRV--KTPHLRPLWTKAKS 113
Query: 79 LKDKFLSI 86
L ++F S+
Sbjct: 114 LLNQFDSV 121
>gi|448726654|ref|ZP_21709048.1| ribonuclease H [Halococcus morrhuae DSM 1307]
gi|445793984|gb|EMA44548.1| ribonuclease H [Halococcus morrhuae DSM 1307]
Length = 196
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 6 DGSLIYNHNG--VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV-CCWLM 62
D S I G VG TTNN A+Y +L L+ A GF +RGDS+LV QV W
Sbjct: 92 DSSGIVAEGGERVGETTNNRAEYDALTRVLERAADYGFDTVELRGDSQLVVEQVKGAWQT 151
Query: 63 ED 64
D
Sbjct: 152 ND 153
>gi|429203761|ref|ZP_19195078.1| ribonuclease HI [Streptomyces ipomoeae 91-03]
gi|428660773|gb|EKX60312.1| ribonuclease HI [Streptomyces ipomoeae 91-03]
Length = 618
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 29/66 (43%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 16 VGITTNNVAKYGSLILGLKYALQ-KGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELC 73
+G+ TNNVA+Y LI GLK A RVR DSKLV Q+ W ++ P M L
Sbjct: 41 IGVATNNVAEYRGLIAGLKAARALDPTATVRVRMDSKLVVEQMSGRWKIKH--PDMKPLA 98
Query: 74 GEAKRL 79
EA R+
Sbjct: 99 AEAARI 104
>gi|50878400|gb|AAT85175.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1096
Score = 40.0 bits (92), Expect = 0.16, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 33/72 (45%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G F V
Sbjct: 510 DGSLSLQGAGAGVTLTSPSGDFLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRFLV 569
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 570 LGDSQLVVNQVC 581
>gi|145349572|ref|XP_001419204.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579435|gb|ABO97497.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 126
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMEDQTPGMAELCGEAKRL 79
T N A+Y +L LGL+ A++ G VRGDSKL+ QV + ++ + + EA L
Sbjct: 39 TVNEAEYAALCLGLRKAVELGITKIEVRGDSKLIVNQVEGSF-KLKSANLKSMHAEACEL 97
Query: 80 KDKF 83
K+KF
Sbjct: 98 KEKF 101
>gi|38345918|emb|CAE04522.2| OSJNBb0076A11.6 [Oryza sativa Japonica Group]
Length = 1453
Score = 40.0 bits (92), Expect = 0.17, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 939 SHNVAEYEALLHGLRIAISLGIRQLIVRGDSQLVVNQVMKEWSCLDDN--MTAYRQEVRK 996
Query: 79 LKDKF 83
L+DKF
Sbjct: 997 LEDKF 1001
>gi|284434716|gb|ADB85414.1| putative retrotransposon protein [Phyllostachys edulis]
Length = 1429
Score = 40.0 bits (92), Expect = 0.17, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 33/71 (46%), Gaps = 19/71 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL+ +G G+ TNNVAKY L+ GL+ A G V
Sbjct: 1067 DGSLMLKGSGAGVVLISPTGEHIKYAIQLNFPATNNVAKYEGLLAGLRAARSLGIRKLLV 1126
Query: 47 RGDSKLVHMQV 57
+GDS+LV QV
Sbjct: 1127 KGDSQLVTNQV 1137
>gi|254774920|ref|ZP_05216436.1| bifunctional RNase H/acid phosphatase [Mycobacterium avium subsp.
avium ATCC 25291]
Length = 383
Score = 40.0 bits (92), Expect = 0.17, Method: Composition-based stats.
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 5 DDGSLIY-NHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLM 62
D G+++ N +G TNNVA+Y LI GL AL+ G V DSKL+ Q+ W +
Sbjct: 28 DRGTVLAENKQAIGRATNNVAEYRGLIAGLDDALKLGATEAEVYLDSKLLVEQMSGRWKV 87
Query: 63 EDQTPGMAELCGEAKRLKDKF 83
+ P + EL +A+ L +F
Sbjct: 88 KH--PDLIELHAQARGLAARF 106
>gi|118466196|ref|YP_881419.1| bifunctional RNase H/acid phosphatase [Mycobacterium avium 104]
gi|118167483|gb|ABK68380.1| phosphoglycerate mutase [Mycobacterium avium 104]
Length = 383
Score = 40.0 bits (92), Expect = 0.17, Method: Composition-based stats.
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 5 DDGSLIY-NHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLM 62
D G+++ N +G TNNVA+Y LI GL AL+ G V DSKL+ Q+ W +
Sbjct: 28 DRGTVLAENKQAIGRATNNVAEYRGLIAGLDDALKLGATEAEVYLDSKLLVEQMSGRWKV 87
Query: 63 EDQTPGMAELCGEAKRLKDKF 83
+ P + EL +A+ L +F
Sbjct: 88 KH--PDLIELHAQARGLAARF 106
>gi|34015095|gb|AAQ56293.1| putative gag-pol precursor [Oryza sativa Japonica Group]
Length = 1311
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+L+ QV W D M E ++
Sbjct: 775 SHNVAEYEALLHGLRIAISLGIHRLIVRGDSQLIVNQVMKEWSCLDDN--MTAYRQEVRK 832
Query: 79 LKDKF 83
L+DKF
Sbjct: 833 LEDKF 837
>gi|222641167|gb|EEE69299.1| hypothetical protein OsJ_28580 [Oryza sativa Japonica Group]
Length = 521
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 18 ITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEA 76
+ ++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E
Sbjct: 76 LASHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDN--MMAYRQEV 133
Query: 77 KRLKDKF 83
++L+DKF
Sbjct: 134 RKLEDKF 140
>gi|116309829|emb|CAH66866.1| H0307D04.11 [Oryza sativa Indica Group]
Length = 2017
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 18 ITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEA 76
+ ++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E
Sbjct: 1479 LASHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDN--MMAYRQEV 1536
Query: 77 KRLKDKF 83
++L+DKF
Sbjct: 1537 RKLEDKF 1543
>gi|38347154|emb|CAE02434.2| OSJNBa0039G19.14 [Oryza sativa Japonica Group]
Length = 640
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G + V GDS+LV QV W D MA E ++
Sbjct: 223 SHNVAEYEALLHGLRIAVSFGIRHLIVHGDSQLVANQVMKEWSCLDDN--MAAYWHEVRK 280
Query: 79 LKDKF 83
L+DKF
Sbjct: 281 LEDKF 285
>gi|429192471|ref|YP_007178149.1| ribonuclease HI [Natronobacterium gregoryi SP2]
gi|448325883|ref|ZP_21515261.1| ribonuclease H [Natronobacterium gregoryi SP2]
gi|429136689|gb|AFZ73700.1| ribonuclease HI [Natronobacterium gregoryi SP2]
gi|445613975|gb|ELY67660.1| ribonuclease H [Natronobacterium gregoryi SP2]
Length = 196
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 6 DGSLIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
DG + +G TNN A+Y +LI L+ A G+ ++RGDS+L+ QV
Sbjct: 94 DGIVAEGSERIGRATNNQAEYAALIAVLEAARDYGYDEVQIRGDSELIVKQV 145
>gi|441212168|ref|ZP_20975194.1| ribonuclease HI [Mycobacterium smegmatis MKD8]
gi|440626221|gb|ELQ88059.1| ribonuclease HI [Mycobacterium smegmatis MKD8]
Length = 365
Score = 40.0 bits (92), Expect = 0.19, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 26/44 (59%)
Query: 15 GVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC 58
+G TNNVA+Y LI GL+ A + G V DSKLV Q+C
Sbjct: 39 AIGRATNNVAEYRGLIAGLEAAAETGAIEVAVSMDSKLVIEQMC 82
>gi|38346855|emb|CAE02225.2| OSJNBb0015C06.3 [Oryza sativa Japonica Group]
Length = 1253
Score = 40.0 bits (92), Expect = 0.19, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++N+A+Y +L+ GL+ A+ G + VRGDS+LV QV W D MA E ++
Sbjct: 936 SHNMAEYEALLHGLRIAISLGIRHLIVRGDSQLVVNQVMKEWSCLDDN--MAAYRLEVRK 993
Query: 79 LKDKF 83
L+DKF
Sbjct: 994 LEDKF 998
>gi|57834031|emb|CAI44627.1| B1168G10.11 [Oryza sativa Japonica Group]
Length = 1489
Score = 40.0 bits (92), Expect = 0.19, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++N+A+Y +L+ GL+ A+ G + VRGDS+LV QV W D MA E ++
Sbjct: 1172 SHNMAEYEALLHGLRIAISLGIRHLIVRGDSQLVVNQVMKEWSCLDDN--MAAYRLEVRK 1229
Query: 79 LKDKF 83
L+DKF
Sbjct: 1230 LEDKF 1234
>gi|77551564|gb|ABA94361.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1342
Score = 40.0 bits (92), Expect = 0.19, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 1184 SHNVAEYEALLHGLRIAISLGIRRLIVRGDSQLVVNQVMKEWSCLDDN--MTAYRQEVRK 1241
Query: 79 LKDKF 83
L+DKF
Sbjct: 1242 LEDKF 1246
>gi|31432019|gb|AAP53711.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1725
Score = 40.0 bits (92), Expect = 0.19, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 1256 SHNVAEYEALLHGLRIAISLGIRRLIVRGDSQLVVNQVMKEWSCLDDN--MTAYRQEVRK 1313
Query: 79 LKDKF 83
L+DKF
Sbjct: 1314 LEDKF 1318
>gi|13489188|gb|AAK27822.1|AC022457_25 putative gag-pol precursor [Oryza sativa Japonica Group]
Length = 1720
Score = 40.0 bits (92), Expect = 0.19, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 1217 SHNVAEYEALLHGLRIAISLGIRRLIVRGDSQLVVNQVMKEWSCLDDN--MTAYRQEVRK 1274
Query: 79 LKDKF 83
L+DKF
Sbjct: 1275 LEDKF 1279
>gi|110289671|gb|ABG66296.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1658
Score = 40.0 bits (92), Expect = 0.19, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 1112 SHNVAEYEALLHGLRIAISLGIRRLIVRGDSQLVVNQVMKEWSCLDDN--MTAYRQEVRK 1169
Query: 79 LKDKF 83
L+DKF
Sbjct: 1170 LEDKF 1174
>gi|110289223|gb|AAP54205.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1734
Score = 40.0 bits (92), Expect = 0.19, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 1227 SHNVAEYEALLHGLRIAISLGIRRLIVRGDSQLVVNQVMKEWSCLDDN--MTAYRQEVRK 1284
Query: 79 LKDKF 83
L+DKF
Sbjct: 1285 LEDKF 1289
>gi|54287555|gb|AAV31299.1| putative polyprotein [Oryza sativa Japonica Group]
gi|54291738|gb|AAV32107.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1857
Score = 40.0 bits (92), Expect = 0.19, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 1321 SHNVAEYEALLHGLRIAISLGIRRLIVRGDSQLVVNQVMKEWSCLDDN--MTAYRQEVRK 1378
Query: 79 LKDKF 83
L+DKF
Sbjct: 1379 LEDKF 1383
>gi|379761544|ref|YP_005347941.1| phosphoglycerate mutase [Mycobacterium intracellulare MOTT-64]
gi|378809486|gb|AFC53620.1| phosphoglycerate mutase [Mycobacterium intracellulare MOTT-64]
Length = 379
Score = 40.0 bits (92), Expect = 0.20, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 9 LIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTP 67
L N +G TNNVA+Y LI GL AL+ G V DSKL+ Q+ W ++ P
Sbjct: 33 LAENKQAIGRATNNVAEYRGLIAGLDDALKLGASEAAVYLDSKLLVEQMSGRWKVKH--P 90
Query: 68 GMAELCGEAKRLKDKF 83
+ EL +A+ L +F
Sbjct: 91 DLIELNAQARALAARF 106
>gi|428216220|ref|YP_007089364.1| ribonuclease HI [Oscillatoria acuminata PCC 6304]
gi|428004601|gb|AFY85444.1| ribonuclease HI [Oscillatoria acuminata PCC 6304]
Length = 135
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 16 VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMEDQTPGMAELCGE 75
+G TTNN A+Y + ILGL+ AL+ G ++R DS+L+ Q+ + P + L +
Sbjct: 39 LGETTNNQAEYQAAILGLETALKMGATRVKLRADSELMVKQLLGQ-YRVKKPELKPLYDQ 97
Query: 76 AKRLKDKFLS 85
K L ++F S
Sbjct: 98 VKSLFNQFES 107
>gi|448661394|ref|ZP_21683631.1| ribonuclease H [Haloarcula californiae ATCC 33799]
gi|445758470|gb|EMA09780.1| ribonuclease H [Haloarcula californiae ATCC 33799]
Length = 173
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 14 NGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQT 66
N +G TNN A+Y +LI L+ A GF + +GDS+L+ Q+ W D T
Sbjct: 72 NTIGEATNNQAEYRALIRALEIAEDAGFDSVTAKGDSQLIVNQITGKWDTNDDT 125
>gi|116317798|emb|CAH65837.1| OSIGBa0124C14.4 [Oryza sativa Indica Group]
Length = 1802
Score = 40.0 bits (92), Expect = 0.20, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G + VRGDS+LV QV W D M E ++
Sbjct: 1266 SHNVAEYEALLHGLRIAISLGIKHLIVRGDSQLVVNQVMKEWSCLDDN--MMAYRQEVRK 1323
Query: 79 LKDKF 83
L+DKF
Sbjct: 1324 LEDKF 1328
>gi|38346888|emb|CAE03913.2| OSJNBb0015G09.7 [Oryza sativa Japonica Group]
Length = 1991
Score = 40.0 bits (92), Expect = 0.20, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G + VRGDS+LV QV W D M E ++
Sbjct: 1455 SHNVAEYEALLHGLRIAISLGIKHLIVRGDSQLVVNQVMKEWSCLDDN--MMAYRQEVRK 1512
Query: 79 LKDKF 83
L+DKF
Sbjct: 1513 LEDKF 1517
>gi|48475214|gb|AAT44283.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1741
Score = 39.7 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G + VRGDS+LV QV W D M E ++
Sbjct: 1398 SHNVAEYEALLHGLRIAISLGIRHLIVRGDSQLVVNQVMKEWSCLDDN--MIAYRQEVRK 1455
Query: 79 LKDKF 83
L+DKF
Sbjct: 1456 LEDKF 1460
>gi|77555386|gb|ABA98182.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1940
Score = 39.7 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 1404 SHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDN--MTAYRQEVRK 1461
Query: 79 LKDKF 83
L+DKF
Sbjct: 1462 LEDKF 1466
>gi|20451040|gb|AAM22011.1|AC093178_6 Putative gag-pol precursor [Oryza sativa Japonica Group]
gi|31430828|gb|AAP52687.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1933
Score = 39.7 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 1481 SHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDN--MTAYRQEVRK 1538
Query: 79 LKDKF 83
L+DKF
Sbjct: 1539 LEDKF 1543
>gi|297194680|ref|ZP_06912078.1| bifunctional RNase H/acid phosphatase [Streptomyces
pristinaespiralis ATCC 25486]
gi|297152391|gb|EFH31713.1| bifunctional RNase H/acid phosphatase [Streptomyces
pristinaespiralis ATCC 25486]
Length = 423
Score = 39.7 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 29/67 (43%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Query: 16 VGITTNNVAKYGSLILGLK--YALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAEL 72
+G+ TNNVA+Y L+ GLK +AL RVR DSKLV Q+ W ++ P M L
Sbjct: 44 IGVATNNVAEYKGLVAGLKAAHALDPEAL-VRVRMDSKLVVEQMSGRWKIKH--PDMKPL 100
Query: 73 CGEAKRL 79
EA R+
Sbjct: 101 AAEAARV 107
>gi|126178291|ref|YP_001046256.1| ribonuclease H [Methanoculleus marisnigri JR1]
gi|125861085|gb|ABN56274.1| ribonuclease H [Methanoculleus marisnigri JR1]
Length = 142
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 6 DGSLIYNHNG-VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC--CWLM 62
DGS++ +G +G TNNVA+Y ++I GL A + VR DS+LV Q+ +
Sbjct: 31 DGSVVAGRSGYIGTATNNVAEYHAVINGLDAAREFTGGRLEVRSDSELVVRQLTGRYRIT 90
Query: 63 EDQTPGMAELCGEAKRLKDKFLSI 86
++ G+AE E +R F +
Sbjct: 91 KEHLAGLAE---EVRRRMRHFAEV 111
>gi|332799079|ref|YP_004460578.1| ribonuclease H [Tepidanaerobacter acetatoxydans Re1]
gi|438002187|ref|YP_007271930.1| Ribonuclease H [Tepidanaerobacter acetatoxydans Re1]
gi|332696814|gb|AEE91271.1| ribonuclease H [Tepidanaerobacter acetatoxydans Re1]
gi|432178981|emb|CCP25954.1| Ribonuclease H [Tepidanaerobacter acetatoxydans Re1]
Length = 141
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 16 VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
+G TTNN+A+Y ++I LK AL+ F V DS+L+ Q+
Sbjct: 40 IGETTNNIAEYTAMITALKEALEMDFDEIEVISDSELMVKQI 81
>gi|147818864|emb|CAN69381.1| hypothetical protein VITISV_019751 [Vitis vinifera]
Length = 633
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 27/37 (72%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQ 56
+NNVAKY +LI+GL+ A++ + + GDSKLV +Q
Sbjct: 530 SNNVAKYQALIIGLQMAIKMKVTSLEICGDSKLVRLQ 566
>gi|357413710|ref|YP_004925446.1| phosphoglycerate mutase [Streptomyces flavogriseus ATCC 33331]
gi|320011079|gb|ADW05929.1| Phosphoglycerate mutase [Streptomyces flavogriseus ATCC 33331]
Length = 429
Score = 39.7 bits (91), Expect = 0.22, Method: Composition-based stats.
Identities = 32/80 (40%), Positives = 42/80 (52%), Gaps = 8/80 (10%)
Query: 5 DDGSLIYNHNGVGITTNNVAKYGSLILGLKYALQKGF----FNFRVRGDSKLVHMQVCC- 59
D +L +G+ TNNVA+Y LI GLK A++ F RVR DSKLV Q+
Sbjct: 33 DTATLAEAAEYIGVATNNVAEYRGLIAGLK-AVRDLFPDTPVQVRVRMDSKLVVEQMSGR 91
Query: 60 WLMEDQTPGMAELCGEAKRL 79
W ++ P M L EA R+
Sbjct: 92 WKIKH--PDMKPLAEEAARI 109
>gi|38567751|emb|CAE76039.1| B1292H11.25 [Oryza sativa Japonica Group]
Length = 1610
Score = 39.7 bits (91), Expect = 0.22, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 7/70 (10%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMED---QTPGMAELCGEA 76
TNN AKY L++G++ A G V+GDSKLV QV +D +P +++ E
Sbjct: 1093 TNNTAKYEGLLVGIRAAAALGVRRQIVKGDSKLVAKQV----HKDYKCSSPELSKYLAEV 1148
Query: 77 KRLKDKFLSI 86
++L+ +F I
Sbjct: 1149 RKLEKRFDGI 1158
>gi|406030331|ref|YP_006729222.1| bifunctional RNase H/acid phosphatase [Mycobacterium indicus pranii
MTCC 9506]
gi|405128878|gb|AFS14133.1| Bifunctional RNase H/acid phosphatase [Mycobacterium indicus pranii
MTCC 9506]
Length = 379
Score = 39.7 bits (91), Expect = 0.22, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 9 LIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTP 67
L N +G TNNVA+Y LI GL AL+ G V DSKL+ Q+ W ++ P
Sbjct: 33 LAENKQAIGRATNNVAEYRGLIAGLDDALKLGASEAAVYLDSKLLVEQMSGRWKVKH--P 90
Query: 68 GMAELCGEAKRLKDKF 83
+ EL +A+ L +F
Sbjct: 91 DLIELHAQARALAARF 106
>gi|387875463|ref|YP_006305767.1| bifunctional RNase H/acid phosphatase [Mycobacterium sp. MOTT36Y]
gi|443305225|ref|ZP_21035013.1| bifunctional RNase H/acid phosphatase [Mycobacterium sp. H4Y]
gi|386788921|gb|AFJ35040.1| bifunctional RNase H/acid phosphatase [Mycobacterium sp. MOTT36Y]
gi|442766789|gb|ELR84783.1| bifunctional RNase H/acid phosphatase [Mycobacterium sp. H4Y]
Length = 379
Score = 39.7 bits (91), Expect = 0.22, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 9 LIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTP 67
L N +G TNNVA+Y LI GL AL+ G V DSKL+ Q+ W ++ P
Sbjct: 33 LAENKQAIGRATNNVAEYRGLIAGLDDALKLGASEAAVYLDSKLLVEQMSGRWKVKH--P 90
Query: 68 GMAELCGEAKRLKDKF 83
+ EL +A+ L +F
Sbjct: 91 DLIELHAQARALAARF 106
>gi|9927274|dbj|BAB08213.2| unnamed protein product [Oryza sativa Japonica Group]
Length = 2876
Score = 39.7 bits (91), Expect = 0.23, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMEDQTPGMAELCGEAKRL 79
+NN A+Y +LI GL AL + R GDS+L+ Q+ + E + P + A+RL
Sbjct: 2330 SNNEAEYEALIFGLLLALSMEVRSLRAHGDSRLIIRQINN-IYEVRKPELVPYYTVARRL 2388
Query: 80 KDKFLSI 86
DKF I
Sbjct: 2389 MDKFEHI 2395
>gi|294812367|ref|ZP_06771010.1| bifunctional RNase H/acid phosphatase [Streptomyces clavuligerus
ATCC 27064]
gi|326440801|ref|ZP_08215535.1| bifunctional RNase H/acid phosphatase [Streptomyces clavuligerus
ATCC 27064]
gi|294324966|gb|EFG06609.1| bifunctional RNase H/acid phosphatase [Streptomyces clavuligerus
ATCC 27064]
Length = 499
Score = 39.7 bits (91), Expect = 0.23, Method: Composition-based stats.
Identities = 29/67 (43%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Query: 16 VGITTNNVAKYGSLILGLK--YALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAEL 72
+G+ TNNVA+Y L+ GLK +AL RVR DSKLV Q+ W ++ P M L
Sbjct: 41 IGVATNNVAEYKGLVAGLKAAHALDPDAM-VRVRMDSKLVVEQMSGRWKIKH--PDMKPL 97
Query: 73 CGEAKRL 79
EA R+
Sbjct: 98 AAEAGRV 104
>gi|38346188|emb|CAD39529.2| OSJNBa0027O01.4 [Oryza sativa Japonica Group]
Length = 2013
Score = 39.7 bits (91), Expect = 0.24, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 1477 SHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSYLDDN--MMAYRQEVRK 1534
Query: 79 LKDKF 83
L+DKF
Sbjct: 1535 LEDKF 1539
>gi|222530387|ref|YP_002574269.1| ribonuclease H [Caldicellulosiruptor bescii DSM 6725]
gi|222457234|gb|ACM61496.1| ribonuclease H [Caldicellulosiruptor bescii DSM 6725]
Length = 198
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 16 VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC-CWLMEDQTPGMAELCG 74
+GI TNN A+Y +LI L+ AL+ G V+GDS+LV QV W + P + L
Sbjct: 38 LGIKTNNEAEYLALIELLQKALELGIKELEVQGDSQLVINQVFGNWNI--NMPHLYSLYE 95
Query: 75 EAKRLKDKF 83
+A L +KF
Sbjct: 96 QATELLEKF 104
>gi|453072807|ref|ZP_21975855.1| bifunctional RNase H/acid phosphatase [Rhodococcus qingshengii BKS
20-40]
gi|452757455|gb|EME15860.1| bifunctional RNase H/acid phosphatase [Rhodococcus qingshengii BKS
20-40]
Length = 371
Score = 39.7 bits (91), Expect = 0.25, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 16 VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCG 74
+GI TNNVA+Y LI GL A + G VR DSKLV Q+ W ++ P M L
Sbjct: 42 IGIATNNVAEYRGLIAGLTAAGELGASTVDVRMDSKLVVEQMSGRWKVKH--PDMIPLQR 99
Query: 75 EAKRLKDKF 83
A L +F
Sbjct: 100 RAAELATQF 108
>gi|448613431|ref|ZP_21663311.1| ribonuclease H [Haloferax mucosum ATCC BAA-1512]
gi|445740328|gb|ELZ91834.1| ribonuclease H [Haloferax mucosum ATCC BAA-1512]
Length = 197
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 16 VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV-CCWLMEDQTPGMAELCG 74
+G TTNN A+Y +LI L A + G+ VRGDS+L+ QV W D PG+ E
Sbjct: 104 IGETTNNRAEYEALIAALSAAAEYGYDEVDVRGDSQLIVKQVRGEWKTND--PGLRERRV 161
Query: 75 EAKRLKDKF 83
+A+ L D+F
Sbjct: 162 KARELLDRF 170
>gi|62732883|gb|AAX95002.1| transposon protein, putative, unclassified [Oryza sativa Japonica
Group]
gi|77552639|gb|ABA95436.1| transposon protein, putative, unclassified [Oryza sativa Japonica
Group]
Length = 1914
Score = 39.7 bits (91), Expect = 0.25, Method: Composition-based stats.
Identities = 33/102 (32%), Positives = 44/102 (43%), Gaps = 24/102 (23%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1328 DGSLSLQGTGAGVTLTSPTGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1387
Query: 47 RGDSKLVHMQVCCWLMEDQT--PGMAELCGEAKRLKDKFLSI 86
GDS+LV QVC ME + P M + +R++ F I
Sbjct: 1388 LGDSQLVVNQVC---MEYRCSDPQMDAYVRQVRRMERHFDGI 1426
>gi|77549440|gb|ABA92237.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1646
Score = 39.7 bits (91), Expect = 0.25, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 1391 SHNVAEYEALLHGLRIAISLGIRRLIVRGDSQLVVNQVMKEWSCLDDN--MMAYRQEVRK 1448
Query: 79 LKDKF 83
L+DKF
Sbjct: 1449 LEDKF 1453
>gi|448411566|ref|ZP_21575967.1| ribonuclease H [Halosimplex carlsbadense 2-9-1]
gi|445670138|gb|ELZ22742.1| ribonuclease H [Halosimplex carlsbadense 2-9-1]
Length = 197
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%)
Query: 6 DGSLIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
DG + + +G TNN A+Y +LI G+ A G VRGDS+L+ QV
Sbjct: 94 DGIVAEGGHTIGRATNNQAEYEALIEGVSVARDYGLDEIDVRGDSELIVKQV 145
>gi|383817660|ref|ZP_09972967.1| bifunctional RNase H/acid phosphatase [Mycobacterium phlei
RIVM601174]
gi|383340009|gb|EID18330.1| bifunctional RNase H/acid phosphatase [Mycobacterium phlei
RIVM601174]
Length = 358
Score = 39.7 bits (91), Expect = 0.25, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 15 GVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELC 73
+G TTNNVA+Y LI GL+ A + G V DSKLV Q+ W +++ P +A+L
Sbjct: 39 AIGHTTNNVAEYRGLIAGLEEAARLGATEVEVLMDSKLVVEQMSGRWKVKN--PDIAKLH 96
Query: 74 GEAKRLKDKF 83
+A L +F
Sbjct: 97 QQASALVGRF 106
>gi|226186262|dbj|BAH34366.1| ribonuclease H/acid phosphatase [Rhodococcus erythropolis PR4]
Length = 374
Score = 39.7 bits (91), Expect = 0.25, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 16 VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCG 74
+GI TNNVA+Y LI GL A + G VR DSKLV Q+ W ++ P M L
Sbjct: 42 IGIATNNVAEYRGLIAGLAAAGELGASTVDVRMDSKLVVEQMSGRWKVKH--PDMIPLQR 99
Query: 75 EAKRLKDKF 83
A L +F
Sbjct: 100 RAAELATQF 108
>gi|22128689|gb|AAM92802.1| putative gag-pol precursor [Oryza sativa Japonica Group]
Length = 2017
Score = 39.7 bits (91), Expect = 0.26, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 1481 SHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDN--MKAYRQEVRK 1538
Query: 79 LKDKF 83
L+DKF
Sbjct: 1539 LEDKF 1543
>gi|110288733|gb|AAP52499.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1995
Score = 39.7 bits (91), Expect = 0.26, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 1459 SHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDN--MKAYRQEVRK 1516
Query: 79 LKDKF 83
L+DKF
Sbjct: 1517 LEDKF 1521
>gi|58531963|emb|CAE03073.3| OSJNBa0089E12.11 [Oryza sativa Japonica Group]
Length = 1370
Score = 39.7 bits (91), Expect = 0.26, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 33/72 (45%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL GVG+T TNN+A+Y L+ GL+ A G V
Sbjct: 784 DGSLSLQGAGVGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 843
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 844 LGDSQLVVNQVC 855
>gi|51854384|gb|AAU10764.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1743
Score = 39.7 bits (91), Expect = 0.26, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 33/72 (45%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL GVG+T TNN+A+Y L+ GL+ A G V
Sbjct: 1199 DGSLSLQGAGVGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1258
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1259 LGDSQLVVNQVC 1270
>gi|392375794|ref|YP_003207627.1| RNase H [Candidatus Methylomirabilis oxyfera]
gi|258593487|emb|CBE69826.1| RNase H [Candidatus Methylomirabilis oxyfera]
Length = 160
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 1 MLRADDGSLIYN-HNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC 59
ML A+DG L + +G TNNVA+Y +L+L L+ A + ++R DS+L+ QV
Sbjct: 38 MLEAEDGLLRRTFYQYIGKATNNVAEYKALLLSLREAEKLQPAVVKIRSDSELLVRQVQG 97
Query: 60 WLMEDQTPGMAELCGEA 76
++P +AEL +A
Sbjct: 98 R-YRVKSPRLAELYTQA 113
>gi|38346515|emb|CAE03810.2| OSJNBa0027H09.10 [Oryza sativa Japonica Group]
gi|38567795|emb|CAE76081.1| B1340F09.19 [Oryza sativa Japonica Group]
Length = 1570
Score = 39.7 bits (91), Expect = 0.26, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 1358 SHNVAEYEALLHGLRIAVSLGIKRLIVRGDSQLVVNQVMKEWSCLDDN--MTAYRQEVRK 1415
Query: 79 LKDKF 83
L+DKF
Sbjct: 1416 LEDKF 1420
>gi|308807192|ref|XP_003080907.1| putative RNase (ISS) [Ostreococcus tauri]
gi|116059368|emb|CAL55075.1| putative RNase (ISS) [Ostreococcus tauri]
Length = 342
Score = 39.7 bits (91), Expect = 0.26, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMEDQTPGMAELCGEAKRL 79
T N A+Y +L LGL+ A++ G VRGDSKL+ QV + ++ + + EA L
Sbjct: 245 TVNEAEYAALCLGLRKAIELGITKIEVRGDSKLIVNQVDGSF-KLKSENLRSMHAEAVSL 303
Query: 80 KDKF 83
K KF
Sbjct: 304 KKKF 307
>gi|46391121|gb|AAS90648.1| putative polyprotein [Oryza sativa Japonica Group]
gi|46485807|gb|AAS98432.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 2000
Score = 39.3 bits (90), Expect = 0.27, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 1464 SHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDN--MMAYRQEVRK 1521
Query: 79 LKDKF 83
L+DKF
Sbjct: 1522 LEDKF 1526
>gi|78708235|gb|ABB47210.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1995
Score = 39.3 bits (90), Expect = 0.27, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 1459 SHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDN--MMAYRQEVRK 1516
Query: 79 LKDKF 83
L+DKF
Sbjct: 1517 LEDKF 1521
>gi|77555338|gb|ABA98134.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1956
Score = 39.3 bits (90), Expect = 0.27, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 1481 SHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDN--MMAYRQEVRK 1538
Query: 79 LKDKF 83
L+DKF
Sbjct: 1539 LEDKF 1543
>gi|77554600|gb|ABA97396.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 2196
Score = 39.3 bits (90), Expect = 0.27, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 1660 SHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDN--MMTYRQEVRK 1717
Query: 79 LKDKF 83
L+DKF
Sbjct: 1718 LEDKF 1722
>gi|77554304|gb|ABA97100.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 790
Score = 39.3 bits (90), Expect = 0.27, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 254 SHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDN--MMAYRQEVRK 311
Query: 79 LKDKF 83
L+DKF
Sbjct: 312 LEDKF 316
>gi|77553887|gb|ABA96683.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1844
Score = 39.3 bits (90), Expect = 0.27, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 1481 SHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDN--MMAYRQEVRK 1538
Query: 79 LKDKF 83
L+DKF
Sbjct: 1539 LEDKF 1543
>gi|77552546|gb|ABA95343.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 2289
Score = 39.3 bits (90), Expect = 0.27, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 1753 SHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDN--MMAYRQEVRK 1810
Query: 79 LKDKF 83
L+DKF
Sbjct: 1811 LEDKF 1815
>gi|77552232|gb|ABA95029.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1995
Score = 39.3 bits (90), Expect = 0.27, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 1459 SHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDN--MMAYRQEVRK 1516
Query: 79 LKDKF 83
L+DKF
Sbjct: 1517 LEDKF 1521
>gi|62734763|gb|AAX96872.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
Japonica Group]
gi|77549715|gb|ABA92512.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1945
Score = 39.3 bits (90), Expect = 0.27, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 1409 SHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDN--MMAYRQEVRK 1466
Query: 79 LKDKF 83
L+DKF
Sbjct: 1467 LEDKF 1471
>gi|31432435|gb|AAP54065.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1995
Score = 39.3 bits (90), Expect = 0.27, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 1459 SHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDN--MMAYRQEVRK 1516
Query: 79 LKDKF 83
L+DKF
Sbjct: 1517 LEDKF 1521
>gi|22795272|gb|AAN08244.1| GAG-POL precursor [Oryza sativa Japonica Group]
gi|31430777|gb|AAP52643.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1032
Score = 39.3 bits (90), Expect = 0.27, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 496 SHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDN--MMAYRQEVRK 553
Query: 79 LKDKF 83
L+DKF
Sbjct: 554 LEDKF 558
>gi|13876521|gb|AAK43497.1|AC020666_7 gag-pol precursor [Oryza sativa Japonica Group]
Length = 2017
Score = 39.3 bits (90), Expect = 0.27, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 1481 SHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDN--MMAYRQEVRK 1538
Query: 79 LKDKF 83
L+DKF
Sbjct: 1539 LEDKF 1543
>gi|21741410|emb|CAD40114.1| OSJNBa0035O13.3 [Oryza sativa Japonica Group]
Length = 2008
Score = 39.3 bits (90), Expect = 0.27, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 1472 SHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDN--MMAYRQEVRK 1529
Query: 79 LKDKF 83
L+DKF
Sbjct: 1530 LEDKF 1534
>gi|312197342|ref|YP_004017403.1| phosphoglycerate mutase [Frankia sp. EuI1c]
gi|311228678|gb|ADP81533.1| Phosphoglycerate mutase [Frankia sp. EuI1c]
Length = 388
Score = 39.3 bits (90), Expect = 0.27, Method: Composition-based stats.
Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 4 ADDGSLIYNHNG-VGITTNNVAKYGSLILGLKYALQKG-FFNFRVRGDSKLVHMQV 57
AD G+L+ G +G+ TNNVA+Y LI GL+ A + + VR DSKLV Q+
Sbjct: 29 ADSGALLAERAGAIGVATNNVAEYQGLIAGLRAAAEVAPDADVEVRMDSKLVVEQM 84
>gi|116309752|emb|CAH66795.1| H0215F08.6 [Oryza sativa Indica Group]
Length = 1991
Score = 39.3 bits (90), Expect = 0.27, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 1455 SHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDN--MMAYRQEVRK 1512
Query: 79 LKDKF 83
L+DKF
Sbjct: 1513 LEDKF 1517
>gi|116309190|emb|CAH66285.1| OSIGBa0161P06.2 [Oryza sativa Indica Group]
Length = 1987
Score = 39.3 bits (90), Expect = 0.27, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 1451 SHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDN--MMAYRQEVRK 1508
Query: 79 LKDKF 83
L+DKF
Sbjct: 1509 LEDKF 1513
>gi|110289529|gb|AAP54912.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1995
Score = 39.3 bits (90), Expect = 0.27, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 1459 SHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDN--MMAYRQEVRK 1516
Query: 79 LKDKF 83
L+DKF
Sbjct: 1517 LEDKF 1521
>gi|108864374|gb|ABA93602.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1761
Score = 39.3 bits (90), Expect = 0.27, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 1225 SHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDN--MMAYRQEVRK 1282
Query: 79 LKDKF 83
L+DKF
Sbjct: 1283 LEDKF 1287
>gi|108862820|gb|ABA98926.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1991
Score = 39.3 bits (90), Expect = 0.27, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 1455 SHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDN--MMAYRQEVRK 1512
Query: 79 LKDKF 83
L+DKF
Sbjct: 1513 LEDKF 1517
>gi|54287609|gb|AAV31353.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1799
Score = 39.3 bits (90), Expect = 0.27, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 1263 SHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDN--MMAYRQEVRK 1320
Query: 79 LKDKF 83
L+DKF
Sbjct: 1321 LEDKF 1325
>gi|50300537|gb|AAT73678.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1992
Score = 39.3 bits (90), Expect = 0.27, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 1456 SHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDN--MMAYRQEVRK 1513
Query: 79 LKDKF 83
L+DKF
Sbjct: 1514 LEDKF 1518
>gi|46063437|gb|AAS79740.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1756
Score = 39.3 bits (90), Expect = 0.27, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 1220 SHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDN--MMAYRQEVRK 1277
Query: 79 LKDKF 83
L+DKF
Sbjct: 1278 LEDKF 1282
>gi|40882693|gb|AAR96234.1| putative polyprotein [Oryza sativa Japonica Group]
gi|108708469|gb|ABF96264.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 2004
Score = 39.3 bits (90), Expect = 0.27, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 1459 SHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDN--MMAYRQEVRK 1516
Query: 79 LKDKF 83
L+DKF
Sbjct: 1517 LEDKF 1521
>gi|38344380|emb|CAE02238.2| OSJNBb0054B09.2 [Oryza sativa Japonica Group]
gi|116309070|emb|CAH66179.1| OSIGBa0130O15.3 [Oryza sativa Indica Group]
gi|116309097|emb|CAH66204.1| OSIGBa0148D14.10 [Oryza sativa Indica Group]
Length = 1992
Score = 39.3 bits (90), Expect = 0.27, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 1456 SHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDN--MMAYRQEVRK 1513
Query: 79 LKDKF 83
L+DKF
Sbjct: 1514 LEDKF 1518
>gi|38344177|emb|CAE03508.2| OSJNBa0053K19.16 [Oryza sativa Japonica Group]
Length = 2010
Score = 39.3 bits (90), Expect = 0.27, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 1474 SHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDN--MMAYRQEVRK 1531
Query: 79 LKDKF 83
L+DKF
Sbjct: 1532 LEDKF 1536
>gi|32487832|emb|CAE05063.1| OSJNBa0094P09.2 [Oryza sativa Japonica Group]
gi|39546270|emb|CAD39817.3| OSJNBa0079F16.18 [Oryza sativa Japonica Group]
Length = 1802
Score = 39.3 bits (90), Expect = 0.27, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 1481 SHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDN--MMAYRQEVRK 1538
Query: 79 LKDKF 83
L+DKF
Sbjct: 1539 LEDKF 1543
>gi|38347303|emb|CAE02298.2| OSJNBa0042F21.5 [Oryza sativa Japonica Group]
Length = 1950
Score = 39.3 bits (90), Expect = 0.27, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 1414 SHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDN--MMAYRQEVRK 1471
Query: 79 LKDKF 83
L+DKF
Sbjct: 1472 LEDKF 1476
>gi|38346695|emb|CAE02180.2| OSJNBa0080E14.11 [Oryza sativa Japonica Group]
Length = 2001
Score = 39.3 bits (90), Expect = 0.27, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 1481 SHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDN--MMAYRQEVRK 1538
Query: 79 LKDKF 83
L+DKF
Sbjct: 1539 LEDKF 1543
>gi|32480322|emb|CAE02454.1| OSJNBa0042D13.7 [Oryza sativa Japonica Group]
Length = 909
Score = 39.3 bits (90), Expect = 0.27, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 373 SHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDN--MMAYRQEVRK 430
Query: 79 LKDKF 83
L+DKF
Sbjct: 431 LEDKF 435
>gi|18071370|gb|AAL58229.1|AC084762_3 putative gag-pol precursor [Oryza sativa Japonica Group]
Length = 2026
Score = 39.3 bits (90), Expect = 0.27, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 1481 SHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDN--MMAYRQEVRK 1538
Query: 79 LKDKF 83
L+DKF
Sbjct: 1539 LEDKF 1543
>gi|19881590|gb|AAM00991.1|AC090482_20 Putative retroelement [Oryza sativa Japonica Group]
Length = 2017
Score = 39.3 bits (90), Expect = 0.27, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 1481 SHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDN--MMAYRQEVRK 1538
Query: 79 LKDKF 83
L+DKF
Sbjct: 1539 LEDKF 1543
>gi|119716247|ref|YP_923212.1| phosphoglycerate mutase [Nocardioides sp. JS614]
gi|119536908|gb|ABL81525.1| Phosphoglycerate mutase [Nocardioides sp. JS614]
Length = 401
Score = 39.3 bits (90), Expect = 0.28, Method: Composition-based stats.
Identities = 31/79 (39%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
Query: 4 ADDGSLIY-NHNGVGITTNNVAKYGSLILGLKYALQ-KGFFNFRVRGDSKLVHMQVCC-W 60
A+ G++I + +GI +NNVA+Y LI GL+ A + + VR DSKLV Q+ W
Sbjct: 29 AETGAVIAEDATAIGIASNNVAEYSGLIAGLRLAERFAPDADIEVRMDSKLVVEQMSGRW 88
Query: 61 LMEDQTPGMAELCGEAKRL 79
++ P M L EA RL
Sbjct: 89 KIKH--PDMRPLATEASRL 105
>gi|55168013|gb|AAV43881.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1551
Score = 39.3 bits (90), Expect = 0.28, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 7/67 (10%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-W--LMEDQTPGMAELCGEA 76
++NVA+Y +L+ GL+ A+ G + VRGDS+LV QV W L ++ T E+C
Sbjct: 1202 SHNVAEYEALLHGLRIAISLGIQHLIVRGDSQLVVNQVMKEWSCLDDNMTTYRQEVC--- 1258
Query: 77 KRLKDKF 83
+L+DKF
Sbjct: 1259 -KLEDKF 1264
>gi|38344494|emb|CAE05173.2| OSJNBa0013A04.10 [Oryza sativa Japonica Group]
Length = 1230
Score = 39.3 bits (90), Expect = 0.28, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 1119 SHNVAEYEALLHGLRIAISLGIRRLIVRGDSQLVVNQVMKEWSCLDDN--MIAYRQEVRK 1176
Query: 79 LKDKF 83
L+DKF
Sbjct: 1177 LEDKF 1181
>gi|407277357|ref|ZP_11105827.1| bifunctional RNase H/acid phosphatase [Rhodococcus sp. P14]
Length = 364
Score = 39.3 bits (90), Expect = 0.28, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 16 VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCG 74
+G TNNVA+Y LI GL A + G VR DSKLV Q+ W ++ P M L
Sbjct: 41 IGRATNNVAEYQGLIAGLTAAAELGADEVDVRMDSKLVVEQMSGRWKIKH--PDMIPLAA 98
Query: 75 EAKRLKDKF 83
A+ L F
Sbjct: 99 RARELAGGF 107
>gi|397780724|ref|YP_006545197.1| ribonuclease HI [Methanoculleus bourgensis MS2]
gi|396939226|emb|CCJ36481.1| ribonuclease HI [Methanoculleus bourgensis MS2]
Length = 141
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 6 DGSLIYNHNG-VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMED 64
+G++ + +G +G TNNVA+Y ++I GL+ A RVR DS+LV Q+
Sbjct: 31 EGAIAASRSGYIGKATNNVAEYHAVINGLRAARAFTEGRLRVRSDSELVVRQL-TGRYRI 89
Query: 65 QTPGMAELCGEAKRLKDKFLSI 86
+ +A L GE ++L F +
Sbjct: 90 RKEHLAVLAGEVQQLARNFAEV 111
>gi|147863985|emb|CAN80489.1| hypothetical protein VITISV_039325 [Vitis vinifera]
Length = 2093
Score = 39.3 bits (90), Expect = 0.28, Method: Composition-based stats.
Identities = 19/40 (47%), Positives = 26/40 (65%)
Query: 18 ITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
+TTNN+ +Y + ILGL+ AL+ G V GDS LV Q+
Sbjct: 1554 LTTNNIVEYEACILGLETALELGIRQMEVFGDSNLVLRQI 1593
>gi|116308914|emb|CAH66045.1| OSIGBa0107A02.6 [Oryza sativa Indica Group]
Length = 1009
Score = 39.3 bits (90), Expect = 0.28, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 898 SHNVAEYEALLHGLRIAISLGIRRLIVRGDSQLVVNQVMKEWSCLDDN--MIAYRQEVRK 955
Query: 79 LKDKF 83
L+DKF
Sbjct: 956 LEDKF 960
>gi|440577271|emb|CCI55279.1| PH01B001G05.2 [Phyllostachys edulis]
Length = 2097
Score = 39.3 bits (90), Expect = 0.28, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 42/98 (42%), Gaps = 20/98 (20%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL+ +G G+ TNNVA+Y L+ GL+ A G V
Sbjct: 1509 DGSLMLQGSGAGVVLISPTGEHIKYAIQLNFPATNNVAEYEGLLAGLRVARSLGIRRLLV 1568
Query: 47 RGDSKLVHMQVCCWLMEDQTPGMAELCGEAKRLKDKFL 84
+GDS+LV QV T M+ E ++L+ F
Sbjct: 1569 KGDSQLVANQVGKEYQCSSTK-MSSYLAEVRKLEKHFF 1605
>gi|222478744|ref|YP_002564981.1| ribonuclease H [Halorubrum lacusprofundi ATCC 49239]
gi|222451646|gb|ACM55911.1| ribonuclease H [Halorubrum lacusprofundi ATCC 49239]
Length = 198
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%)
Query: 6 DGSLIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
DG + +G TNN A+Y +LI L+ A + F VRGDS+L+ QV
Sbjct: 94 DGIVAEGGERIGRVTNNQAEYAALIRALEAADEYDFDEIDVRGDSQLIVKQV 145
>gi|41408078|ref|NP_960914.1| bifunctional RNase H/acid phosphatase [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|417746648|ref|ZP_12395141.1| fructose-2,6-bisphosphatase [Mycobacterium avium subsp.
paratuberculosis S397]
gi|440777596|ref|ZP_20956394.1| bifunctional RNase H/acid phosphatase [Mycobacterium avium subsp.
paratuberculosis S5]
gi|41396433|gb|AAS04297.1| hypothetical protein MAP_1980c [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|336461839|gb|EGO40695.1| fructose-2,6-bisphosphatase [Mycobacterium avium subsp.
paratuberculosis S397]
gi|436722174|gb|ELP46181.1| bifunctional RNase H/acid phosphatase [Mycobacterium avium subsp.
paratuberculosis S5]
Length = 377
Score = 39.3 bits (90), Expect = 0.29, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 5 DDGSLIY-NHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLM 62
D G+++ N +G TNNVA+Y L+ GL AL+ G V DSKL+ Q+ W +
Sbjct: 28 DRGTVLAENKQAIGRATNNVAEYRGLLAGLGDALKLGATEAEVYLDSKLLVEQMSGRWKV 87
Query: 63 EDQTPGMAELCGEAKRLKDKF 83
+ P + EL +A+ L +F
Sbjct: 88 KH--PDLIELHAQARSLAARF 106
>gi|50878385|gb|AAT85160.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1316
Score = 39.3 bits (90), Expect = 0.29, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 7/67 (10%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-W--LMEDQTPGMAELCGEA 76
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W L ++ T E+C
Sbjct: 927 SHNVAEYEALLHGLRIAISVGIRRLIVRGDSQLVVNQVMKEWSCLDDNMTAYRQEVC--- 983
Query: 77 KRLKDKF 83
+L+DKF
Sbjct: 984 -KLEDKF 989
>gi|108706113|gb|ABF93908.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 983
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 496 SHNVAEYEALLHGLRIAISLGIRRLIVRGDSQLVVNQVMKEWSCLDD--NMTAYRQEVRK 553
Query: 79 LKDKF 83
L+DKF
Sbjct: 554 LEDKF 558
>gi|424868008|ref|ZP_18291776.1| Putative ribonuclease H [Leptospirillum sp. Group II 'C75']
gi|206603679|gb|EDZ40159.1| Putative ribonuclease H [Leptospirillum sp. Group II '5-way CG']
gi|387221603|gb|EIJ76144.1| Putative ribonuclease H [Leptospirillum sp. Group II 'C75']
Length = 134
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 1 MLRADDGSLIYNHNGV-GITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC 58
+L+ ++G +I++ V TNN A+Y +LI GL+ A +G N VR DS+L+ Q+
Sbjct: 21 LLQDEEGRVIFSEGRVLPPGTNNQAEYQALIAGLQAARDRGVRNLLVRADSELMIRQMT 79
>gi|34015181|gb|AAQ56376.1| putative polyprotein [Oryza sativa Japonica Group]
gi|34015206|gb|AAQ56400.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1197
Score = 39.3 bits (90), Expect = 0.30, Method: Composition-based stats.
Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 19 TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMEDQTPGMAELCGEAKR 78
TTNN A+Y +++LGLK A G + +R DSKLV V + E + GM EA R
Sbjct: 633 TTNNTAEYEAILLGLKKAKALGVWRLLIRTDSKLVAGHVDKFF-EAKEEGMKRYL-EAVR 690
Query: 79 LKDK 82
K+K
Sbjct: 691 SKEK 694
>gi|46391119|gb|AAS90646.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1991
Score = 39.3 bits (90), Expect = 0.30, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 1455 SHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCIDDN--MMAYRQEVRK 1512
Query: 79 LKDKF 83
L+DKF
Sbjct: 1513 LEDKF 1517
>gi|77555417|gb|ABA98213.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1964
Score = 39.3 bits (90), Expect = 0.30, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 1428 SHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCIDDN--MMAYRQEVRK 1485
Query: 79 LKDKF 83
L+DKF
Sbjct: 1486 LEDKF 1490
>gi|77554274|gb|ABA97070.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1988
Score = 39.3 bits (90), Expect = 0.30, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 1452 SHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDN--MIAYRQEVRK 1509
Query: 79 LKDKF 83
L+DKF
Sbjct: 1510 LEDKF 1514
>gi|77554831|gb|ABA97627.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 2010
Score = 39.3 bits (90), Expect = 0.30, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 1474 SHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCIDDN--MMAYRQEVRK 1531
Query: 79 LKDKF 83
L+DKF
Sbjct: 1532 LEDKF 1536
>gi|77555933|gb|ABA98729.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1964
Score = 39.3 bits (90), Expect = 0.30, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 1428 SHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCIDDN--MMAYRQEVRK 1485
Query: 79 LKDKF 83
L+DKF
Sbjct: 1486 LEDKF 1490
>gi|77550802|gb|ABA93599.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1912
Score = 39.3 bits (90), Expect = 0.30, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 1477 SHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDN--MMAYRPEVRK 1534
Query: 79 LKDKF 83
L+DKF
Sbjct: 1535 LEDKF 1539
>gi|77552111|gb|ABA94908.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1994
Score = 39.3 bits (90), Expect = 0.30, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 1458 SHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCIDDN--MMAYRQEVRK 1515
Query: 79 LKDKF 83
L+DKF
Sbjct: 1516 LEDKF 1520
>gi|77552282|gb|ABA95079.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1966
Score = 39.3 bits (90), Expect = 0.30, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 1430 SHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCIDDN--MMAYRQEVRK 1487
Query: 79 LKDKF 83
L+DKF
Sbjct: 1488 LEDKF 1492
>gi|18958679|gb|AAL82662.1|AC092387_10 retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
Japonica Group]
gi|20270061|gb|AAM18149.1|AC092172_9 Putative gag-pol precursor [Oryza sativa Japonica Group]
gi|31430891|gb|AAP52743.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1964
Score = 39.3 bits (90), Expect = 0.30, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 1428 SHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCIDDN--MMAYRQEVRK 1485
Query: 79 LKDKF 83
L+DKF
Sbjct: 1486 LEDKF 1490
>gi|22128685|gb|AAM92798.1| putative gag-pol precursor [Oryza sativa Japonica Group]
Length = 1986
Score = 39.3 bits (90), Expect = 0.30, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 1450 SHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCIDDN--MMAYRQEVRK 1507
Query: 79 LKDKF 83
L+DKF
Sbjct: 1508 LEDKF 1512
>gi|22795275|gb|AAN08247.1| putative GAG-POL precursor [Oryza sativa Japonica Group]
Length = 1696
Score = 39.3 bits (90), Expect = 0.30, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 1290 SHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCIDDN--MMAYRQEVRK 1347
Query: 79 LKDKF 83
L+DKF
Sbjct: 1348 LEDKF 1352
>gi|38344596|emb|CAE05341.2| OSJNBa0079M09.16 [Oryza sativa Japonica Group]
Length = 1601
Score = 39.3 bits (90), Expect = 0.30, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 1420 SHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCIDDN--MMAYRQEVRK 1477
Query: 79 LKDKF 83
L+DKF
Sbjct: 1478 LEDKF 1482
>gi|218196063|gb|EEC78490.1| hypothetical protein OsI_18391 [Oryza sativa Indica Group]
Length = 614
Score = 39.3 bits (90), Expect = 0.30, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 78 SHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCIDDN--MMAYRQEVRK 135
Query: 79 LKDKF 83
L+DKF
Sbjct: 136 LEDKF 140
>gi|116309081|emb|CAH66189.1| OSIGBa0144J05.1 [Oryza sativa Indica Group]
Length = 1601
Score = 39.3 bits (90), Expect = 0.30, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 1420 SHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCIDDN--MMAYRQEVRK 1477
Query: 79 LKDKF 83
L+DKF
Sbjct: 1478 LEDKF 1482
>gi|110288792|gb|ABG65979.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 829
Score = 39.3 bits (90), Expect = 0.30, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 293 SHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCIDDN--MMAYRQEVRK 350
Query: 79 LKDKF 83
L+DKF
Sbjct: 351 LEDKF 355
>gi|110288734|gb|AAP52501.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1964
Score = 39.3 bits (90), Expect = 0.30, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 1428 SHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCIDDN--MMAYRQEVRK 1485
Query: 79 LKDKF 83
L+DKF
Sbjct: 1486 LEDKF 1490
>gi|53982138|gb|AAV25234.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1953
Score = 39.3 bits (90), Expect = 0.30, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 1450 SHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCIDDN--MMAYRQEVRK 1507
Query: 79 LKDKF 83
L+DKF
Sbjct: 1508 LEDKF 1512
>gi|46485805|gb|AAS98430.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 2004
Score = 39.3 bits (90), Expect = 0.30, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 1468 SHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCIDDN--MMAYRQEVRK 1525
Query: 79 LKDKF 83
L+DKF
Sbjct: 1526 LEDKF 1530
>gi|38347562|emb|CAE04995.2| OSJNBb0093G06.3 [Oryza sativa Japonica Group]
Length = 1986
Score = 39.3 bits (90), Expect = 0.30, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 1450 SHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCIDDN--MMAYRQEVRK 1507
Query: 79 LKDKF 83
L+DKF
Sbjct: 1508 LEDKF 1512
>gi|359477856|ref|XP_003632035.1| PREDICTED: uncharacterized protein LOC100854167 [Vitis vinifera]
Length = 2300
Score = 39.3 bits (90), Expect = 0.32, Method: Composition-based stats.
Identities = 20/39 (51%), Positives = 25/39 (64%)
Query: 19 TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TTNN+ +Y + ILGL+ AL+ G V GDS LV QV
Sbjct: 1753 TTNNIVEYEACILGLETALELGITQMDVLGDSNLVLRQV 1791
>gi|147790735|emb|CAN59929.1| hypothetical protein VITISV_023498 [Vitis vinifera]
Length = 1839
Score = 39.3 bits (90), Expect = 0.32, Method: Composition-based stats.
Identities = 20/39 (51%), Positives = 25/39 (64%)
Query: 19 TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TTNN+ +Y + ILGL+ AL+ G V GDS LV QV
Sbjct: 1518 TTNNIVEYEACILGLETALELGITQMDVLGDSNLVLRQV 1556
>gi|147767517|emb|CAN66714.1| hypothetical protein VITISV_041527 [Vitis vinifera]
Length = 2066
Score = 39.3 bits (90), Expect = 0.32, Method: Composition-based stats.
Identities = 20/39 (51%), Positives = 25/39 (64%)
Query: 19 TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TTNN+ +Y + ILGL+ AL+ G V GDS LV QV
Sbjct: 1528 TTNNIVEYEACILGLETALELGITQMDVLGDSNLVLRQV 1566
>gi|32489191|emb|CAE04376.1| OSJNBa0027G07.14 [Oryza sativa Japonica Group]
Length = 1031
Score = 39.3 bits (90), Expect = 0.33, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 445 DGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGILRLLV 504
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 505 LGDSQLVVNQVC 516
>gi|118467729|ref|YP_888582.1| bifunctional RNase H/acid phosphatase [Mycobacterium smegmatis
str. MC2 155]
gi|399988606|ref|YP_006568956.1| bifunctional ribonuclease H/phosphoglycerate mutase
[Mycobacterium smegmatis str. MC2 155]
gi|118169016|gb|ABK69912.1| phosphoglycerate mutase [Mycobacterium smegmatis str. MC2 155]
gi|399233168|gb|AFP40661.1| Putative bifunctional ribonuclease H/phosphoglycerate mutase
[Mycobacterium smegmatis str. MC2 155]
Length = 365
Score = 39.3 bits (90), Expect = 0.33, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 26/44 (59%)
Query: 15 GVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC 58
+G TNNVA+Y LI GL+ A + G V DSKLV Q+C
Sbjct: 39 AIGRATNNVAEYRGLIAGLEAAAETGATEVAVSMDSKLVIEQMC 82
>gi|345014665|ref|YP_004817019.1| phosphoglycerate mutase [Streptomyces violaceusniger Tu 4113]
gi|344041014|gb|AEM86739.1| Phosphoglycerate mutase [Streptomyces violaceusniger Tu 4113]
Length = 391
Score = 39.3 bits (90), Expect = 0.34, Method: Composition-based stats.
Identities = 30/67 (44%), Positives = 37/67 (55%), Gaps = 6/67 (8%)
Query: 16 VGITTNNVAKYGSLILGLK--YALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAEL 72
+G TNNVA+Y LI GL+ YAL RVR DSKLV Q+ W ++ P M L
Sbjct: 42 IGTATNNVAEYKGLIAGLRAAYALDPE-AEVRVRMDSKLVIEQMSGRWKIKH--PDMRPL 98
Query: 73 CGEAKRL 79
EAK +
Sbjct: 99 AAEAKAI 105
>gi|222637552|gb|EEE67684.1| hypothetical protein OsJ_25333 [Oryza sativa Japonica Group]
Length = 238
Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 78 SHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCIDD--NMMAYRQEVRK 135
Query: 79 LKDKF 83
L+DKF
Sbjct: 136 LEDKF 140
>gi|108862665|gb|ABA98419.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1316
Score = 38.9 bits (89), Expect = 0.35, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 7/67 (10%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-W--LMEDQTPGMAELCGEA 76
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W L ++ T E+C
Sbjct: 1185 SHNVAEYAALLHGLRIAICLGIRRLIVRGDSQLVVNQVMKEWSCLDDNMTAYRQEVC--- 1241
Query: 77 KRLKDKF 83
+L+DKF
Sbjct: 1242 -KLEDKF 1247
>gi|429731084|ref|ZP_19265725.1| ribonuclease HI [Corynebacterium durum F0235]
gi|429146467|gb|EKX89520.1| ribonuclease HI [Corynebacterium durum F0235]
Length = 371
Score = 38.9 bits (89), Expect = 0.36, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 12/90 (13%)
Query: 4 ADDGSLIYNHNG---------VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVH 54
A G+++Y+ +G VG TNNVA+Y +L+ GL+ A G V DSKLV
Sbjct: 18 AGSGTVLYDASGTVLTSIADYVGTATNNVAEYRALLNGLEAARDLGATEVEVLMDSKLVV 77
Query: 55 MQVCC-WLMEDQTPGMAELCGEAKRLKDKF 83
Q+ W ++ P M EL +A+ + F
Sbjct: 78 EQMSGRWKIKH--PDMKELALKAQAIARDF 105
>gi|197121176|ref|YP_002133127.1| ribonuclease H [Anaeromyxobacter sp. K]
gi|220915876|ref|YP_002491180.1| ribonuclease H [Anaeromyxobacter dehalogenans 2CP-1]
gi|196171025|gb|ACG71998.1| ribonuclease H [Anaeromyxobacter sp. K]
gi|219953730|gb|ACL64114.1| ribonuclease H [Anaeromyxobacter dehalogenans 2CP-1]
Length = 253
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 9/61 (14%)
Query: 7 GSLIYNHNG---------VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
G++I N +G +G +TNNVA+Y LILGLK A G V DS+L+ Q+
Sbjct: 141 GAVIVNADGHIVAKIGKFLGDSTNNVAEYMGLILGLKRAKAMGIKELEVLSDSELMVKQL 200
Query: 58 C 58
Sbjct: 201 A 201
>gi|449448948|ref|XP_004142227.1| PREDICTED: uncharacterized protein LOC101212475 [Cucumis sativus]
Length = 1388
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 32/53 (60%)
Query: 1 MLRADDGSLIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLV 53
++ + L Y+ + +NNVA+Y +LI+GL+ AL+ G V GDSKL+
Sbjct: 924 LISPEKHMLPYSFALSELCSNNVAEYQALIIGLQIALEIGVSFIEVYGDSKLI 976
>gi|77554510|gb|ABA97306.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1500
Score = 38.9 bits (89), Expect = 0.36, Method: Composition-based stats.
Identities = 33/104 (31%), Positives = 42/104 (40%), Gaps = 28/104 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1170 DGSLSLQGAGAGVTLTSPSGDVLRYMVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1229
Query: 47 RGDSKLVHMQVC----CWLMEDQTPGMAELCGEAKRLKDKFLSI 86
GDS+LV QVC C P M + +R+K F I
Sbjct: 1230 LGDSQLVVNQVCKEYRC-----SDPQMDAYVRQVRRMKRHFDGI 1268
>gi|22094344|gb|AAM91871.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 552
Score = 38.9 bits (89), Expect = 0.36, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMED---QTPGMAELCGEA 76
TNN A+Y L+ G+K A G V+GDS+LV QV +D P +A+ E
Sbjct: 396 TNNTAEYEGLLAGIKAAAALGVKRLIVKGDSELVANQV----HKDYKCSNPELAKYLAEV 451
Query: 77 KRLKDKFLSI 86
++L+ KF I
Sbjct: 452 RKLERKFNDI 461
>gi|147837850|emb|CAN67148.1| hypothetical protein VITISV_008839 [Vitis vinifera]
Length = 1747
Score = 38.9 bits (89), Expect = 0.36, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 25/39 (64%)
Query: 19 TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TTNN+ +Y + ILGL+ AL+ G V GDS LV Q+
Sbjct: 1588 TTNNIVEYEACILGLEMALELGIRQMEVFGDSNLVLRQI 1626
>gi|110289284|gb|ABG66150.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 536
Score = 38.9 bits (89), Expect = 0.36, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMED---QTPGMAELCGEA 76
TNN A+Y L+ G+K A G V+GDS+LV QV +D P +A+ E
Sbjct: 165 TNNTAEYEGLLAGIKAAAALGVKRLIVKGDSELVANQV----HKDYKCSNPELAKYLAEV 220
Query: 77 KRLKDKFLSI 86
++L+ KF I
Sbjct: 221 RKLERKFNDI 230
>gi|48475204|gb|AAT44273.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 1943
Score = 38.9 bits (89), Expect = 0.36, Method: Composition-based stats.
Identities = 33/104 (31%), Positives = 42/104 (40%), Gaps = 28/104 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1371 DGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1430
Query: 47 RGDSKLVHMQVC----CWLMEDQTPGMAELCGEAKRLKDKFLSI 86
GDS+LV QVC C P M + +R+K F I
Sbjct: 1431 LGDSQLVVNQVCKEYRC-----SDPQMDTYVRQVRRMKRHFDGI 1469
>gi|13384382|gb|AAK21350.1|AC024594_14 putative GAG-POL precursor [Oryza sativa Japonica Group]
Length = 321
Score = 38.9 bits (89), Expect = 0.36, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMED---QTPGMAELCGEA 76
TNN A+Y L+ G+K A G V+GDS+LV QV +D P +A+ E
Sbjct: 165 TNNTAEYEGLLAGIKAAAALGVKRLIVKGDSELVANQV----HKDYKCSNPELAKYLAEV 220
Query: 77 KRLKDKFLSI 86
++L+ KF I
Sbjct: 221 RKLERKFNDI 230
>gi|269791797|ref|YP_003316701.1| ribonuclease H [Thermanaerovibrio acidaminovorans DSM 6589]
gi|269099432|gb|ACZ18419.1| ribonuclease H [Thermanaerovibrio acidaminovorans DSM 6589]
Length = 132
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 1 MLRADDGSLIYNHNG-VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC 58
+L +DG +++ H +G TNN A+Y +LI L+ A +G GDS+LV QV
Sbjct: 22 LLEDEDGRVVWEHREYLGRRTNNEAEYWALIALLEEARSRGIDRLIAMGDSQLVVSQVT 80
>gi|374607259|ref|ZP_09680060.1| Phosphoglycerate mutase [Mycobacterium tusciae JS617]
gi|373555095|gb|EHP81665.1| Phosphoglycerate mutase [Mycobacterium tusciae JS617]
Length = 361
Score = 38.9 bits (89), Expect = 0.37, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 15 GVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELC 73
+G TNNVA+Y LI GL+ A + G V DSKLV Q+ W ++ P M L
Sbjct: 39 AIGRATNNVAEYSGLIAGLEEAAKLGASEVDVNMDSKLVVEQMSGRWKVKH--PDMVPLH 96
Query: 74 GEAKRLKDKF 83
EA L +F
Sbjct: 97 QEATALSTRF 106
>gi|359481118|ref|XP_003632571.1| PREDICTED: uncharacterized protein LOC100854783 [Vitis vinifera]
Length = 2085
Score = 38.9 bits (89), Expect = 0.37, Method: Composition-based stats.
Identities = 20/39 (51%), Positives = 25/39 (64%)
Query: 19 TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TTNN+ +Y + ILGL+ AL+ G V GDS LV QV
Sbjct: 1547 TTNNIVEYEACILGLETALELGITQMDVLGDSDLVLRQV 1585
>gi|51854356|gb|AAU10736.1| putative polyprotein [Oryza sativa Japonica Group]
gi|52353374|gb|AAU43942.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1995
Score = 38.9 bits (89), Expect = 0.38, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 1466 SHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDN--MMAYRQEIRK 1523
Query: 79 LKDKF 83
L+DKF
Sbjct: 1524 LEDKF 1528
>gi|443672672|ref|ZP_21137754.1| RNase H domain phosphoglycerate/bisphosphoglycerate mutase
[Rhodococcus sp. AW25M09]
gi|443414838|emb|CCQ16092.1| RNase H domain phosphoglycerate/bisphosphoglycerate mutase
[Rhodococcus sp. AW25M09]
Length = 377
Score = 38.9 bits (89), Expect = 0.38, Method: Composition-based stats.
Identities = 29/73 (39%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 15 GVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELC 73
+GI TNNVA+Y LI L A G VR DSKLV Q+ W ++ P M L
Sbjct: 43 ALGIATNNVAEYNGLIAALTAAADVGAREVDVRMDSKLVVEQMSGRWKVKH--PDMIPLQ 100
Query: 74 GEAKRLKDKFLSI 86
+A L +F S+
Sbjct: 101 RKAAELARRFDSV 113
>gi|108864359|gb|ABA93438.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1129
Score = 38.9 bits (89), Expect = 0.38, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 7/70 (10%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMED---QTPGMAELCGEA 76
TNN A+Y +L++G++ A G V+GDS+LV QV +D +P +++ E
Sbjct: 665 TNNTAEYQALLVGIRVAAALGVRQLIVKGDSELVANQV----HKDYKCSSPELSKYLAEV 720
Query: 77 KRLKDKFLSI 86
++L+ +F I
Sbjct: 721 RKLEKRFDGI 730
>gi|108709472|gb|ABF97267.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 663
Score = 38.9 bits (89), Expect = 0.38, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 192 SHNVAEYEALLHGLRIAISLGIRRLIVRGDSQLVVNQVMKEWSCLDDN--MTAYRQEVRK 249
Query: 79 LKDKF 83
L+D+F
Sbjct: 250 LEDRF 254
>gi|50399972|gb|AAT76360.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1474
Score = 38.9 bits (89), Expect = 0.38, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 973 SHNVAEYEALLHGLRIAISLGIRRLIVRGDSQLVVNQVMKEWSCLDDN--MTAYRQEVRK 1030
Query: 79 LKDKF 83
L+D+F
Sbjct: 1031 LEDRF 1035
>gi|147773530|emb|CAN63008.1| hypothetical protein VITISV_003744 [Vitis vinifera]
Length = 1878
Score = 38.9 bits (89), Expect = 0.39, Method: Composition-based stats.
Identities = 19/38 (50%), Positives = 24/38 (63%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TNN+ +Y + ILGLK AL+ G V GDS LV Q+
Sbjct: 1341 TNNIVEYEACILGLKTALELGIGQMEVFGDSNLVFRQI 1378
>gi|4680180|gb|AAD27548.1|AF111709_2 polyprotein [Oryza sativa Indica Group]
Length = 829
Score = 38.9 bits (89), Expect = 0.39, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++N+A+Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 293 SHNIAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDN--MMAYRQEVRK 350
Query: 79 LKDKF 83
L+DKF
Sbjct: 351 LEDKF 355
>gi|38344628|emb|CAE02527.2| OSJNBb0003A12.14 [Oryza sativa Japonica Group]
Length = 1863
Score = 38.9 bits (89), Expect = 0.39, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++N+A+Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 1327 SHNIAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDN--MMAYRQEVRK 1384
Query: 79 LKDKF 83
L+DKF
Sbjct: 1385 LEDKF 1389
>gi|32489969|emb|CAE05586.1| OSJNBa0032N05.14 [Oryza sativa Japonica Group]
Length = 598
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 25/39 (64%)
Query: 19 TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TTNN AKY +++LGL+ A G +R DSKLV QV
Sbjct: 542 TTNNTAKYKAVLLGLRKAKALGVRRLLIRTDSKLVASQV 580
>gi|410582738|ref|ZP_11319844.1| putative SAM-dependent methyltransferase [Thermaerobacter
subterraneus DSM 13965]
gi|410505558|gb|EKP95067.1| putative SAM-dependent methyltransferase [Thermaerobacter
subterraneus DSM 13965]
Length = 504
Score = 38.9 bits (89), Expect = 0.39, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 16 VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMEDQTPGMAELCGE 75
+G TNNVA+Y +LI GL+ AL +G V DS+L+ Q+ + G+ L +
Sbjct: 400 IGAATNNVAEYTALITGLQRALDRGARRLDVYSDSELMVRQLNGQ-YRVKNEGLKPLFEQ 458
Query: 76 AKRLKDKF 83
A RL +F
Sbjct: 459 AARLAAQF 466
>gi|359475724|ref|XP_003631741.1| PREDICTED: uncharacterized protein LOC100260551 [Vitis vinifera]
Length = 1856
Score = 38.9 bits (89), Expect = 0.41, Method: Composition-based stats.
Identities = 20/39 (51%), Positives = 25/39 (64%)
Query: 19 TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TTNN+ +Y + ILGL+ AL+ G V GDS LV QV
Sbjct: 1318 TTNNIVEYEACILGLETALELGITQVDVLGDSNLVLRQV 1356
>gi|10281201|gb|AAG15480.1| polyprotein [Oryza sativa Indica Group]
Length = 567
Score = 38.9 bits (89), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 496 SHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCIDD--NMMAYRQEVRK 553
Query: 79 LKDKF 83
L+DKF
Sbjct: 554 LEDKF 558
>gi|268323231|emb|CBH36819.1| hypothetical protein, containing RNase H domain [uncultured
archaeon]
Length = 213
Score = 38.9 bits (89), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 27/38 (71%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TNN+A+Y +L+ GL AL+ G+ + + GDSKLV QV
Sbjct: 42 TNNIAEYTALLTGLTKALELGWKHIIIEGDSKLVINQV 79
>gi|108862465|gb|ABA97388.2| retrotransposon protein, putative, Ty3-gypsy subclass, expressed
[Oryza sativa Japonica Group]
Length = 567
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 496 SHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCIDD--NMMAYRQEVRK 553
Query: 79 LKDKF 83
L+DKF
Sbjct: 554 LEDKF 558
>gi|31432300|gb|AAP53950.1| transposon protein, putative, unclassified [Oryza sativa Japonica
Group]
Length = 2026
Score = 38.9 bits (89), Expect = 0.42, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A+ G V
Sbjct: 1440 DGSLSLQGAGAGVTLTSPNGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAVGLGIRRLLV 1499
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1500 LGDSQLVVNQVC 1511
>gi|52353748|gb|AAU44314.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 2027
Score = 38.9 bits (89), Expect = 0.42, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A+ G V
Sbjct: 1441 DGSLSLQGAGAGVTLTSPNGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAVGLGIRRLLV 1500
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1501 LGDSQLVVNQVC 1512
>gi|440756017|ref|ZP_20935218.1| RNase H family protein [Microcystis aeruginosa TAIHU98]
gi|440173239|gb|ELP52697.1| RNase H family protein [Microcystis aeruginosa TAIHU98]
Length = 283
Score = 38.9 bits (89), Expect = 0.43, Method: Composition-based stats.
Identities = 19/38 (50%), Positives = 26/38 (68%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TNN A+Y LI+GL+ A + G + +RGDS+LV QV
Sbjct: 55 TNNEAEYTGLIIGLEKAQELGLKSLEIRGDSQLVINQV 92
>gi|425468993|ref|ZP_18847962.1| Ribonuclease H like [Microcystis aeruginosa PCC 9701]
gi|389884185|emb|CCI35486.1| Ribonuclease H like [Microcystis aeruginosa PCC 9701]
Length = 279
Score = 38.9 bits (89), Expect = 0.43, Method: Composition-based stats.
Identities = 19/38 (50%), Positives = 26/38 (68%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TNN A+Y LI+GL+ A + G + +RGDS+LV QV
Sbjct: 51 TNNEAEYTGLIIGLEKAQELGLKSLEIRGDSQLVINQV 88
>gi|390437718|ref|ZP_10226247.1| Ribonuclease H like [Microcystis sp. T1-4]
gi|389838916|emb|CCI30371.1| Ribonuclease H like [Microcystis sp. T1-4]
Length = 279
Score = 38.9 bits (89), Expect = 0.43, Method: Composition-based stats.
Identities = 19/38 (50%), Positives = 26/38 (68%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TNN A+Y LI+GL+ A + G + +RGDS+LV QV
Sbjct: 51 TNNEAEYTGLIIGLEKAQELGLKSLEIRGDSQLVINQV 88
>gi|425464734|ref|ZP_18844044.1| Ribonuclease H like [Microcystis aeruginosa PCC 9809]
gi|389833173|emb|CCI22543.1| Ribonuclease H like [Microcystis aeruginosa PCC 9809]
Length = 279
Score = 38.9 bits (89), Expect = 0.43, Method: Composition-based stats.
Identities = 19/38 (50%), Positives = 26/38 (68%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TNN A+Y LI+GL+ A + G + +RGDS+LV QV
Sbjct: 51 TNNEAEYTGLIIGLEKAQELGLKSLEIRGDSQLVINQV 88
>gi|425440628|ref|ZP_18820926.1| Ribonuclease H like [Microcystis aeruginosa PCC 9717]
gi|389718917|emb|CCH97212.1| Ribonuclease H like [Microcystis aeruginosa PCC 9717]
Length = 279
Score = 38.9 bits (89), Expect = 0.43, Method: Composition-based stats.
Identities = 19/38 (50%), Positives = 26/38 (68%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TNN A+Y LI+GL+ A + G + +RGDS+LV QV
Sbjct: 51 TNNEAEYTGLIIGLEKAQELGLKSLEIRGDSQLVINQV 88
>gi|425437469|ref|ZP_18817884.1| Genome sequencing data, contig C320 [Microcystis aeruginosa PCC
9432]
gi|389677547|emb|CCH93523.1| Genome sequencing data, contig C320 [Microcystis aeruginosa PCC
9432]
Length = 279
Score = 38.9 bits (89), Expect = 0.43, Method: Composition-based stats.
Identities = 19/38 (50%), Positives = 26/38 (68%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TNN A+Y LI+GL+ A + G + +RGDS+LV QV
Sbjct: 51 TNNEAEYTGLIIGLEKAQELGLKSLEIRGDSQLVINQV 88
>gi|166368039|ref|YP_001660312.1| ribonuclease H like [Microcystis aeruginosa NIES-843]
gi|166090412|dbj|BAG05120.1| ribonuclease H like [Microcystis aeruginosa NIES-843]
Length = 279
Score = 38.9 bits (89), Expect = 0.43, Method: Composition-based stats.
Identities = 19/38 (50%), Positives = 26/38 (68%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TNN A+Y LI+GL+ A + G + +RGDS+LV QV
Sbjct: 51 TNNEAEYTGLIIGLEKAQELGLKSLEIRGDSQLVINQV 88
>gi|147838310|emb|CAN76756.1| hypothetical protein VITISV_012606 [Vitis vinifera]
Length = 1195
Score = 38.9 bits (89), Expect = 0.43, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 25/39 (64%)
Query: 19 TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TTNN+ +Y + ILGL+ AL+ G V GDS LV Q+
Sbjct: 657 TTNNIVEYEACILGLETALELGIRQMEVFGDSNLVLRQI 695
>gi|147783484|emb|CAN72956.1| hypothetical protein VITISV_002875 [Vitis vinifera]
Length = 1391
Score = 38.9 bits (89), Expect = 0.43, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 25/39 (64%)
Query: 19 TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TTNN+ +Y + ILGL+ AL+ G V GDS LV Q+
Sbjct: 923 TTNNIVEYEACILGLETALELGIRQMEVFGDSNLVLRQI 961
>gi|27476094|gb|AAO17025.1| Putative gag-pol precursor [Oryza sativa Japonica Group]
gi|108705838|gb|ABF93633.1| transposon protein, putative, unclassified [Oryza sativa Japonica
Group]
Length = 2027
Score = 38.9 bits (89), Expect = 0.44, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1441 DGSLFLQGAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1500
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1501 LGDSQLVVNQVC 1512
>gi|300087256|ref|YP_003757778.1| ribonuclease H [Dehalogenimonas lykanthroporepellens BL-DC-9]
gi|299526989|gb|ADJ25457.1| ribonuclease H [Dehalogenimonas lykanthroporepellens BL-DC-9]
Length = 133
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 16 VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMEDQTPGMAELCGE 75
+G TNN A+Y ++I L+ + ++G + R+ DS+LV Q+ + + PG+A L
Sbjct: 40 LGRLTNNQAEYRAVIAALEESGRQGATHLRINADSELVVKQL-NGIYRVKNPGLAPLALR 98
Query: 76 AKRLKDKFLSI 86
K L+ +F +
Sbjct: 99 VKELEKRFEKV 109
>gi|229490280|ref|ZP_04384122.1| phosphoglycerate mutase [Rhodococcus erythropolis SK121]
gi|229322812|gb|EEN88591.1| phosphoglycerate mutase [Rhodococcus erythropolis SK121]
Length = 376
Score = 38.9 bits (89), Expect = 0.44, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 16 VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCG 74
+GI TNNVA+Y LI GL A + G VR DSKLV Q+ W ++ P M L
Sbjct: 42 IGIATNNVAEYRGLIAGLIAAGELGASTVDVRMDSKLVVEQMSGRWKVKH--PDMIPLQR 99
Query: 75 EAKRLKDKF 83
A L +F
Sbjct: 100 RAAELATQF 108
>gi|21741950|emb|CAD40441.1| OSJNBa0035B13.14 [Oryza sativa Japonica Group]
Length = 1736
Score = 38.9 bits (89), Expect = 0.45, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 1382 SHNVAEYEALFHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDN--MMAYRQEVRK 1439
Query: 79 LKDKF 83
L+DKF
Sbjct: 1440 LEDKF 1444
>gi|317122878|ref|YP_004102881.1| ribonuclease H [Thermaerobacter marianensis DSM 12885]
gi|315592858|gb|ADU52154.1| ribonuclease H [Thermaerobacter marianensis DSM 12885]
Length = 140
Score = 38.9 bits (89), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 16 VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
+G TNNVA+Y +LI GL+ AL+ G V DS+L+ Q+
Sbjct: 44 IGTATNNVAEYTALITGLQRALEHGARRLEVYSDSELMVRQL 85
>gi|77556422|gb|ABA99218.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 938
Score = 38.5 bits (88), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 402 SHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDD--NMMAYRQEVRK 459
Query: 79 LKDKF 83
L+DKF
Sbjct: 460 LEDKF 464
>gi|38347265|emb|CAE05312.2| OSJNBa0056L23.10 [Oryza sativa Japonica Group]
Length = 867
Score = 38.5 bits (88), Expect = 0.46, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 19 TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAK 77
T++NVA+Y L+ GL+ + G VRGDS+LV QV W D M E +
Sbjct: 352 TSHNVAEYEVLLHGLRIVISLGIKRLIVRGDSQLVVNQVMKEWSCIDDN--MTAYRQEVR 409
Query: 78 RLKDKF 83
+L+DKF
Sbjct: 410 KLEDKF 415
>gi|86740144|ref|YP_480544.1| bifunctional RNase H/acid phosphatase [Frankia sp. CcI3]
gi|86567006|gb|ABD10815.1| Phosphoglycerate mutase [Frankia sp. CcI3]
Length = 378
Score = 38.5 bits (88), Expect = 0.47, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 14 NGVGITTNNVAKYGSLILGLKYALQKG-FFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAE 71
+ +G TNNVA+Y LI GL+ A + VR DSKLV Q+ W ++ P M
Sbjct: 42 DSIGRATNNVAEYSGLIAGLRAAAEIAPDAELEVRMDSKLVVEQMSGRWKVKH--PAMRP 99
Query: 72 LCGEAKRLKDKFLSI 86
L EA L +F ++
Sbjct: 100 LVAEATELAARFPAV 114
>gi|348675545|gb|EGZ15363.1| hypothetical protein PHYSODRAFT_505768 [Phytophthora sojae]
Length = 389
Score = 38.5 bits (88), Expect = 0.47, Method: Composition-based stats.
Identities = 19/38 (50%), Positives = 24/38 (63%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TNN A+Y +L+LG + A G + RV GDS LV QV
Sbjct: 7 TNNTAEYSALLLGSRAAADHGATSLRVEGDSTLVIQQV 44
>gi|348665813|gb|EGZ05642.1| hypothetical protein PHYSODRAFT_462993 [Phytophthora sojae]
Length = 538
Score = 38.5 bits (88), Expect = 0.47, Method: Composition-based stats.
Identities = 19/38 (50%), Positives = 24/38 (63%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TNN A+Y +L+LG + A G + RV GDS LV QV
Sbjct: 7 TNNTAEYSALLLGSRAAADHGATSLRVEGDSTLVIQQV 44
>gi|348665811|gb|EGZ05640.1| hypothetical protein PHYSODRAFT_533596 [Phytophthora sojae]
Length = 367
Score = 38.5 bits (88), Expect = 0.47, Method: Composition-based stats.
Identities = 19/38 (50%), Positives = 24/38 (63%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TNN A+Y +L+LG + A G + RV GDS LV QV
Sbjct: 7 TNNTAEYSALLLGSRAAADHGATSLRVEGDSTLVIQQV 44
>gi|284991875|ref|YP_003410429.1| phosphoglycerate mutase [Geodermatophilus obscurus DSM 43160]
gi|284065120|gb|ADB76058.1| Phosphoglycerate mutase [Geodermatophilus obscurus DSM 43160]
Length = 363
Score = 38.5 bits (88), Expect = 0.48, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 16 VGITTNNVAKYGSLILGLKYALQ-KGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELC 73
VG TNNVA+YG L+ GL+ AL + VR DSKLV Q+ W ++ P M +L
Sbjct: 41 VGRATNNVAEYGGLVAGLQAALDLDPTADVEVRMDSKLVVEQMSGRWKVKH--PDMQKLA 98
Query: 74 GEAKRLKDKFLSI 86
+A+++ + S+
Sbjct: 99 LQARQIARQLGSV 111
>gi|374990380|ref|YP_004965875.1| bifunctional RNase H/acid phosphatase [Streptomyces bingchenggensis
BCW-1]
gi|297161032|gb|ADI10744.1| bifunctional RNase H/acid phosphatase [Streptomyces bingchenggensis
BCW-1]
Length = 421
Score = 38.5 bits (88), Expect = 0.49, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 6/68 (8%)
Query: 16 VGITTNNVAKYGSLILGLKYALQ---KGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAE 71
+G TNNVA+Y LI GL+ A + +VR DSKLV Q+ W ++ PGM
Sbjct: 42 IGTATNNVAEYKGLIAGLRAARALDPEAGVQVQVRMDSKLVVEQMSGRWKVKH--PGMRP 99
Query: 72 LCGEAKRL 79
L EA+ +
Sbjct: 100 LAAEAREI 107
>gi|365874504|ref|ZP_09414037.1| ribonuclease HI [Thermanaerovibrio velox DSM 12556]
gi|363984591|gb|EHM10798.1| ribonuclease HI [Thermanaerovibrio velox DSM 12556]
Length = 145
Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 1 MLRADDGSLIYNHNG-VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC 58
+L D GS+I+ + G +G TNN A+Y +LI L+ ++G + V GDS+LV QV
Sbjct: 22 LLVDDGGSVIWEYRGFLGHRTNNEAEYQALIALLEEVRRRGIRSVLVMGDSQLVISQVT 80
>gi|38605744|emb|CAE03836.3| OSJNBb0013J13.13 [Oryza sativa Japonica Group]
Length = 1836
Score = 38.5 bits (88), Expect = 0.49, Method: Composition-based stats.
Identities = 33/102 (32%), Positives = 43/102 (42%), Gaps = 24/102 (23%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1250 DGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1309
Query: 47 RGDSKLVHMQVCCWLMEDQT--PGMAELCGEAKRLKDKFLSI 86
GDS+LV QVC E Q P M + +R++ F I
Sbjct: 1310 LGDSQLVANQVC---KEYQCSDPQMDAYVRQVRRMERHFDGI 1348
>gi|355572032|ref|ZP_09043240.1| ribonuclease H [Methanolinea tarda NOBI-1]
gi|354825128|gb|EHF09363.1| ribonuclease H [Methanolinea tarda NOBI-1]
Length = 141
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 16 VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMEDQTPGMAELCGE 75
+G TNN A+Y ++I L A + G R+ DS+LV Q+ ++ PG+ ELC
Sbjct: 41 LGKKTNNEAEYHAVIKALAAAKKHGAHRVRICSDSQLVIRQLRGEYRVNK-PGLRELCAR 99
Query: 76 AKRLKDKFLSI 86
+ + K+ S+
Sbjct: 100 VRLCEQKYSSV 110
>gi|38346727|emb|CAE04877.2| OSJNBa0086O06.25 [Oryza sativa Japonica Group]
Length = 2027
Score = 38.5 bits (88), Expect = 0.52, Method: Composition-based stats.
Identities = 31/100 (31%), Positives = 41/100 (41%), Gaps = 20/100 (20%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1441 DGSLSLQGAGAGVTLTSPTGDVLRYLVRLDFRATNNMAEYDGLLAGLRVAAGLGIRRLLV 1500
Query: 47 RGDSKLVHMQVCCWLMEDQTPGMAELCGEAKRLKDKFLSI 86
GDS+LV QV C P M + +R++ F I
Sbjct: 1501 LGDSQLVVNQV-CKEYRSSDPQMDAYVRQVRRMERHFDGI 1539
>gi|58532117|emb|CAH68539.2| OSJNBa0009P12.6 [Oryza sativa Japonica Group]
Length = 2027
Score = 38.5 bits (88), Expect = 0.52, Method: Composition-based stats.
Identities = 31/100 (31%), Positives = 41/100 (41%), Gaps = 20/100 (20%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1441 DGSLSLQGAGAGVTLTSPTGDVLRYLVRLDFRATNNMAEYDGLLAGLRVAAGLGIRRLLV 1500
Query: 47 RGDSKLVHMQVCCWLMEDQTPGMAELCGEAKRLKDKFLSI 86
GDS+LV QV C P M + +R++ F I
Sbjct: 1501 LGDSQLVVNQV-CKEYRSSDPQMDAYVRQVRRMERHFDGI 1539
>gi|147768722|emb|CAN62676.1| hypothetical protein VITISV_002828 [Vitis vinifera]
Length = 1762
Score = 38.5 bits (88), Expect = 0.55, Method: Composition-based stats.
Identities = 19/38 (50%), Positives = 24/38 (63%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TNN+ +Y + ILGLK AL+ G V GDS LV Q+
Sbjct: 1069 TNNIVEYEACILGLKTALELGIRQMEVFGDSNLVLRQI 1106
>gi|395225347|ref|ZP_10403873.1| ribonuclease HI [Thiovulum sp. ES]
gi|394446521|gb|EJF07343.1| ribonuclease HI [Thiovulum sp. ES]
Length = 157
Score = 38.5 bits (88), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 32/58 (55%)
Query: 1 MLRADDGSLIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC 58
+L + D + +G TNN A+Y +LIL L+ AL+ G + GDSKLV QV
Sbjct: 55 ILNSSDEVIYQRGEVIGTGTNNEAEYFALILLLETALKNGVEKMEIFGDSKLVVEQVS 112
>gi|108709239|gb|ABF97034.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1908
Score = 38.5 bits (88), Expect = 0.57, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 9/56 (16%)
Query: 7 GSLIYNHNGVGI---------TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLV 53
+++++ NGV I TTNNVA+Y +++LGL+ A G +R DSKLV
Sbjct: 1355 ATVLFSPNGVPIRYAARLQFDTTNNVAEYEAVLLGLRKAKALGVRRLLIRTDSKLV 1410
>gi|53749379|gb|AAU90238.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1923
Score = 38.5 bits (88), Expect = 0.57, Method: Composition-based stats.
Identities = 31/100 (31%), Positives = 41/100 (41%), Gaps = 20/100 (20%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1337 DGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1396
Query: 47 RGDSKLVHMQVCCWLMEDQTPGMAELCGEAKRLKDKFLSI 86
GDS+LV QV C P M + +R++ F I
Sbjct: 1397 LGDSQLVVNQV-CKEYRSSDPQMDAYVRQVRRMEHHFDGI 1435
>gi|31126674|gb|AAP44597.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1862
Score = 38.5 bits (88), Expect = 0.57, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 9/56 (16%)
Query: 7 GSLIYNHNGVGI---------TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLV 53
+++++ NGV I TTNNVA+Y +++LGL+ A G +R DSKLV
Sbjct: 1309 ATVLFSPNGVPIRYAARLQFDTTNNVAEYEAVLLGLRKAKALGVRRLLIRTDSKLV 1364
>gi|46981262|gb|AAT07580.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 1793
Score = 38.5 bits (88), Expect = 0.58, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 7/76 (9%)
Query: 14 NGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMED---QTPGMA 70
N V TNN A+Y L+ G++ A G V+GDS+LV QV +D +P ++
Sbjct: 1193 NDVQRATNNTAEYEGLLTGIRAAAALGVRRLIVKGDSELVANQV----HKDYKCSSPELS 1248
Query: 71 ELCGEAKRLKDKFLSI 86
+ E ++L+ +F I
Sbjct: 1249 KYLAEVRKLEKRFDGI 1264
>gi|19225035|gb|AAL86511.1|AC099040_15 putative polyprotein [Oryza sativa Japonica Group]
Length = 1722
Score = 38.1 bits (87), Expect = 0.60, Method: Composition-based stats.
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 19 TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLV 53
TTNN A+Y +++LGL+ A GF +R DSKLV
Sbjct: 1189 TTNNAAEYEAILLGLRKAKALGFRRLLIRTDSKLV 1223
>gi|147838173|emb|CAN74143.1| hypothetical protein VITISV_009412 [Vitis vinifera]
Length = 548
Score = 38.1 bits (87), Expect = 0.60, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 25/39 (64%)
Query: 19 TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TTNN+ +Y + ILGL+ AL+ G V GDS LV Q+
Sbjct: 127 TTNNIIEYEACILGLETALELGIRQMEVFGDSNLVLRQI 165
>gi|110288815|gb|AAP52706.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1735
Score = 38.1 bits (87), Expect = 0.60, Method: Composition-based stats.
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 19 TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLV 53
TTNN A+Y +++LGL+ A GF +R DSKLV
Sbjct: 1202 TTNNAAEYEAILLGLRKAKALGFRRLLIRTDSKLV 1236
>gi|312794240|ref|YP_004027163.1| ribonuclease h [Caldicellulosiruptor kristjanssonii 177R1B]
gi|312181380|gb|ADQ41550.1| ribonuclease H [Caldicellulosiruptor kristjanssonii 177R1B]
Length = 199
Score = 38.1 bits (87), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 16 VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC-CWLMEDQTPGMAELCG 74
+GI TNN A+Y +LI L+ AL+ G + GDS+LV QV W + P + L
Sbjct: 38 LGIRTNNEAEYLALIELLQKALELGIRELEIMGDSQLVINQVFGNWNI--NMPHLYTLYN 95
Query: 75 EAKRLKDKF 83
+A L +KF
Sbjct: 96 QATELLEKF 104
>gi|38344641|emb|CAE05074.2| OSJNBa0094P09.13 [Oryza sativa Japonica Group]
Length = 2027
Score = 38.1 bits (87), Expect = 0.61, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G + V
Sbjct: 1441 DGSLSLQGAGAGVTLTSPTGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRHLLV 1500
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1501 LGDSQLVVNQVC 1512
>gi|147783047|emb|CAN73070.1| hypothetical protein VITISV_016195 [Vitis vinifera]
Length = 1720
Score = 38.1 bits (87), Expect = 0.62, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 26/39 (66%)
Query: 19 TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
+TNN+ +Y + ILGL+ AL+ G +V GDS LV Q+
Sbjct: 1375 STNNIVEYEACILGLETALELGIKQMKVFGDSNLVLRQI 1413
>gi|312126659|ref|YP_003991533.1| ribonuclease h [Caldicellulosiruptor hydrothermalis 108]
gi|311776678|gb|ADQ06164.1| ribonuclease H [Caldicellulosiruptor hydrothermalis 108]
Length = 199
Score = 38.1 bits (87), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 16 VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC-CWLMEDQTPGMAELCG 74
+GI TNN A+Y +LI L+ AL+ G + GDS+LV QV W + P + L
Sbjct: 38 LGIKTNNEAEYLALIELLQKALELGIKELEILGDSQLVINQVFGSWNI--NMPHLYALYE 95
Query: 75 EAKRLKDKF 83
+A L +KF
Sbjct: 96 QATELLEKF 104
>gi|90265083|emb|CAH67755.1| H0124E07.2 [Oryza sativa Indica Group]
Length = 453
Score = 38.1 bits (87), Expect = 0.63, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 6/65 (9%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMEDQTPGMAELCGEAKRL 79
TNN A+Y L+ G++ A G V+GDS+LV Q C +P +++ E ++L
Sbjct: 56 TNNTAEYEGLLAGIRAAAVLGVKRLIVKGDSELVANQKC------SSPELSKYLAEVRKL 109
Query: 80 KDKFL 84
+ K L
Sbjct: 110 EKKPL 114
>gi|345004168|ref|YP_004807021.1| ribonuclease H [halophilic archaeon DL31]
gi|344319794|gb|AEN04648.1| ribonuclease H [halophilic archaeon DL31]
Length = 197
Score = 38.1 bits (87), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 6 DGSLIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
DG L +G TNN A+Y +LI L+ A G +RGDS+L+ QV
Sbjct: 94 DGILAEGGETIGRATNNQAEYAALIRVLEAAGDLGIEELDIRGDSQLIVKQV 145
>gi|77556713|gb|ABA99509.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 2003
Score = 38.1 bits (87), Expect = 0.66, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G +RGDS+LV QV W D M E ++
Sbjct: 1581 SHNVAEYEALLHGLRIAISLGIHRLIIRGDSQLVVNQVMKEWSCLDDN--MTAYRQEVRK 1638
Query: 79 LKDKF 83
L++KF
Sbjct: 1639 LENKF 1643
>gi|41469319|gb|AAS07175.1| putative reverse transcriptase [Oryza sativa Japonica Group]
gi|108709517|gb|ABF97312.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 2002
Score = 38.1 bits (87), Expect = 0.66, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1416 DGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLMV 1475
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1476 LGDSQLVVNQVC 1487
>gi|86157150|ref|YP_463935.1| ribonuclease H [Anaeromyxobacter dehalogenans 2CP-C]
gi|85773661|gb|ABC80498.1| ribonuclease H [Anaeromyxobacter dehalogenans 2CP-C]
Length = 168
Score = 38.1 bits (87), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 9/61 (14%)
Query: 7 GSLIYNHNG---------VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
G++I N +G +G +TNNVA+Y LILGLK A G V DS+L+ Q+
Sbjct: 56 GAVIVNADGHIVAKIGKFLGDSTNNVAEYMGLILGLKRAKAMGIKELEVLSDSELMVKQL 115
Query: 58 C 58
Sbjct: 116 A 116
>gi|358456704|ref|ZP_09166926.1| Phosphoglycerate mutase [Frankia sp. CN3]
gi|357080025|gb|EHI89462.1| Phosphoglycerate mutase [Frankia sp. CN3]
Length = 389
Score = 38.1 bits (87), Expect = 0.66, Method: Composition-based stats.
Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 4 ADDGSLIYNHNG-VGITTNNVAKYGSLILGLKYALQKG-FFNFRVRGDSKLVHMQV 57
AD G+++ G +G+ TNNVA+Y LI GL+ A + + VR DSKLV Q+
Sbjct: 30 ADSGAVLAERAGAIGVATNNVAEYQGLIAGLRAAAEVAPDADVEVRMDSKLVVEQM 85
>gi|38345903|emb|CAE03547.2| OSJNBa0060D06.13 [Oryza sativa Japonica Group]
Length = 1909
Score = 38.1 bits (87), Expect = 0.66, Method: Composition-based stats.
Identities = 31/100 (31%), Positives = 41/100 (41%), Gaps = 20/100 (20%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1323 DGSLSLQGAGAGVTLTSPTGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1382
Query: 47 RGDSKLVHMQVCCWLMEDQTPGMAELCGEAKRLKDKFLSI 86
GDS+LV QV C P M + +R++ F I
Sbjct: 1383 LGDSQLVVNQV-CKEYRSSDPQMDAYVRQVRRMERHFDGI 1421
>gi|324998690|ref|ZP_08119802.1| bifunctional RNase H/acid phosphatase [Pseudonocardia sp. P1]
Length = 392
Score = 38.1 bits (87), Expect = 0.67, Method: Composition-based stats.
Identities = 21/45 (46%), Positives = 27/45 (60%)
Query: 13 HNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
++G+G TNNVA+Y LI GL A + G R DSKLV Q+
Sbjct: 46 YDGLGTATNNVAEYRGLIAGLTAARELGATEVDARLDSKLVVEQM 90
>gi|408677713|ref|YP_006877540.1| Phosphoglycerate mutase family [Streptomyces venezuelae ATCC 10712]
gi|328882042|emb|CCA55281.1| Phosphoglycerate mutase family [Streptomyces venezuelae ATCC 10712]
Length = 499
Score = 38.1 bits (87), Expect = 0.68, Method: Composition-based stats.
Identities = 28/68 (41%), Positives = 37/68 (54%), Gaps = 8/68 (11%)
Query: 16 VGITTNNVAKYGSLILGLKYALQKGFF---NFRVRGDSKLVHMQVCC-WLMEDQTPGMAE 71
+G+ TNNVA+Y L+ GLK A + F VR DSKLV Q+ W ++ P M
Sbjct: 46 IGVATNNVAEYKGLVAGLKAA--RELFPDATVHVRMDSKLVVEQMSGRWKIKH--PDMKP 101
Query: 72 LCGEAKRL 79
L EA R+
Sbjct: 102 LAAEAGRV 109
>gi|147860783|emb|CAN83164.1| hypothetical protein VITISV_002083 [Vitis vinifera]
Length = 488
Score = 38.1 bits (87), Expect = 0.69, Method: Composition-based stats.
Identities = 19/38 (50%), Positives = 24/38 (63%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TNN+ KY + ILGL+ AL+ G V GDS LV Q+
Sbjct: 140 TNNIVKYEACILGLETALELGIRQMXVFGDSNLVLRQI 177
>gi|116312041|emb|CAJ86406.1| OSIGBa0125M19.9 [Oryza sativa Indica Group]
Length = 1903
Score = 38.1 bits (87), Expect = 0.69, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1317 DGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYKGLLAGLRVAAGLGIRRLLV 1376
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1377 LGDSQLVVNQVC 1388
>gi|108710812|gb|ABF98607.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1748
Score = 38.1 bits (87), Expect = 0.69, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1337 DGSLSLQGAGAGVTLTSPNGDVLRYLVRLDFRATNNMAEYKGLLAGLRVAAGLGIRRLLV 1396
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1397 LGDSQLVVNQVC 1408
>gi|62733570|gb|AAX95687.1| RNase H, putative [Oryza sativa Japonica Group]
Length = 1775
Score = 38.1 bits (87), Expect = 0.69, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1364 DGSLSLQGAGAGVTLTSPNGDVLRYLVRLDFRATNNMAEYKGLLAGLRVAAGLGIRRLLV 1423
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1424 LGDSQLVVNQVC 1435
>gi|14018045|gb|AAK52108.1|AC079936_4 Putative retroelement [Oryza sativa Japonica Group]
Length = 275
Score = 38.1 bits (87), Expect = 0.69, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMED---QTPGMAELCGEA 76
TNN+AKY L GL+ A+ G V+GDS+LV QV +D P +A+ +
Sbjct: 204 TNNIAKYEGLPSGLRAAVALGVKRLIVKGDSELVANQV----HKDYKCSNPELAKYLTDV 259
Query: 77 KRLKDKF 83
++L+ KF
Sbjct: 260 RKLERKF 266
>gi|9229988|dbj|BAB00646.1| unnamed protein product [Oryza sativa Japonica Group]
gi|11138069|dbj|BAB17742.1| GAG-POL precursor [Oryza sativa Japonica Group]
Length = 1473
Score = 38.1 bits (87), Expect = 0.69, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 918 DGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYKGLLAGLRVAAGLGIRRLLV 977
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 978 LGDSQLVVNQVC 989
>gi|307150716|ref|YP_003886100.1| ribonuclease H [Cyanothece sp. PCC 7822]
gi|306980944|gb|ADN12825.1| ribonuclease H [Cyanothece sp. PCC 7822]
Length = 320
Score = 38.1 bits (87), Expect = 0.69, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 16 VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
+ + TNN A+Y LI+GL+ A + G V+GDS+LV QV
Sbjct: 49 ISVATNNEAEYTGLIVGLQKAKELGIEALTVKGDSQLVINQV 90
>gi|38345498|emb|CAD41709.2| OSJNBa0010D21.11 [Oryza sativa Japonica Group]
Length = 1884
Score = 38.1 bits (87), Expect = 0.70, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 42/104 (40%), Gaps = 28/104 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1298 DGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1357
Query: 47 RGDSKLVHMQVC----CWLMEDQTPGMAELCGEAKRLKDKFLSI 86
GDS+LV QVC C P M + +R++ F I
Sbjct: 1358 LGDSQLVVNQVCKEYRC-----SDPQMDAFVRQVRRMERHFDGI 1396
>gi|29893597|gb|AAP06851.1| putative polyprotein [Oryza sativa Japonica Group]
gi|108707306|gb|ABF95101.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1918
Score = 38.1 bits (87), Expect = 0.71, Method: Composition-based stats.
Identities = 33/102 (32%), Positives = 43/102 (42%), Gaps = 24/102 (23%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1454 DGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVATGLGIRRLLV 1513
Query: 47 RGDSKLVHMQVCCWLMEDQT--PGMAELCGEAKRLKDKFLSI 86
GDS+LV QVC E Q P M + +R++ F I
Sbjct: 1514 LGDSQLVVNQVC---KEYQCSDPQMDAYVRQVRRMERHFDGI 1552
>gi|134098170|ref|YP_001103831.1| bifunctional ribonuclease H/phosphoglycerate mutase
[Saccharopolyspora erythraea NRRL 2338]
gi|291007551|ref|ZP_06565524.1| putative bifunctional protein (ribonuclease H/phosphoglycerate
mutase) [Saccharopolyspora erythraea NRRL 2338]
gi|133910793|emb|CAM00906.1| putative bifunctional protein (ribonuclease H/phosphoglycerate
mutase) [Saccharopolyspora erythraea NRRL 2338]
Length = 366
Score = 38.1 bits (87), Expect = 0.71, Method: Composition-based stats.
Identities = 21/43 (48%), Positives = 26/43 (60%)
Query: 15 GVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
G+G TNN A+Y LI GL A++ G VR DSKLV Q+
Sbjct: 41 GLGTATNNAAEYRGLIEGLSAAVELGAEAIEVRMDSKLVIEQM 83
>gi|62732811|gb|AAX94930.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
gi|77550198|gb|ABA92995.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1765
Score = 38.1 bits (87), Expect = 0.72, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 1204 SHNVAEYEALLHGLRIAISLGIRRLIVRGDSQLVVNQVMKEWSCLDDN--MTAYRQEVRK 1261
Query: 79 LKDKF 83
L++KF
Sbjct: 1262 LENKF 1266
>gi|108711454|gb|ABF99249.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1552
Score = 38.1 bits (87), Expect = 0.72, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 1044 SHNVAEYEALLHGLRIAISLGIRRLIVRGDSQLVVNQVMKEWSCLDDN--MTAYRQEVRK 1101
Query: 79 LKDKF 83
L++KF
Sbjct: 1102 LENKF 1106
>gi|50355721|gb|AAT75246.1| putative gag-pol precursor [Oryza sativa Japonica Group]
Length = 1512
Score = 38.1 bits (87), Expect = 0.72, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 1004 SHNVAEYEALLHGLRIAISLGIRRLIVRGDSQLVVNQVMKEWSCLDDN--MTAYRQEVRK 1061
Query: 79 LKDKF 83
L++KF
Sbjct: 1062 LENKF 1066
>gi|284045112|ref|YP_003395452.1| ribonuclease H [Conexibacter woesei DSM 14684]
gi|283949333|gb|ADB52077.1| ribonuclease H [Conexibacter woesei DSM 14684]
Length = 133
Score = 38.1 bits (87), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 26/42 (61%)
Query: 16 VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
+G TNNVA+Y +L+LGL+ A G V DS+LV QV
Sbjct: 39 IGEATNNVAEYRALLLGLERARALGATEVEVVNDSELVAKQV 80
>gi|375141515|ref|YP_005002164.1| fructose-2,6-bisphosphatase [Mycobacterium rhodesiae NBB3]
gi|359822136|gb|AEV74949.1| fructose-2,6-bisphosphatase [Mycobacterium rhodesiae NBB3]
Length = 362
Score = 38.1 bits (87), Expect = 0.73, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 15 GVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELC 73
+G +TNNVA+Y LI GL+ A G V DSKLV Q+ W ++ P M L
Sbjct: 39 AIGHSTNNVAEYSGLIAGLEEAATLGASEVEVNMDSKLVVEQMSGRWKVKH--PDMVPLH 96
Query: 74 GEAKRLKDKF 83
+A L +F
Sbjct: 97 QQATALSTRF 106
>gi|407643380|ref|YP_006807139.1| bifunctional RNase H/acid phosphatase [Nocardia brasiliensis ATCC
700358]
gi|407306264|gb|AFU00165.1| bifunctional RNase H/acid phosphatase [Nocardia brasiliensis ATCC
700358]
Length = 377
Score = 38.1 bits (87), Expect = 0.74, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 16 VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCG 74
+G+ TNNVA+Y LI GL+ + + G VR DSKLV Q+ W ++ M L
Sbjct: 43 IGVATNNVAEYRGLIAGLEASAELGAQVVAVRMDSKLVVEQMSGRWKVKH--AAMIPLAD 100
Query: 75 EAKRLKDKF 83
A+RL F
Sbjct: 101 RARRLVAGF 109
>gi|227833568|ref|YP_002835275.1| Ribonuclease HI [Corynebacterium aurimucosum ATCC 700975]
gi|262184559|ref|ZP_06043980.1| Ribonuclease HI [Corynebacterium aurimucosum ATCC 700975]
gi|227454584|gb|ACP33337.1| Ribonuclease HI [Corynebacterium aurimucosum ATCC 700975]
Length = 389
Score = 38.1 bits (87), Expect = 0.75, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 19 TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAK 77
+TNNVA+Y L+ GL+ A++ G DSKLV Q+ W ++ P M +L EA+
Sbjct: 44 STNNVAEYHGLLRGLEAAVELGADEVEFYMDSKLVVEQMNGRWKIKH--PDMQKLAIEAR 101
Query: 78 RLKDKFLS 85
RL D+ S
Sbjct: 102 RLLDQIPS 109
>gi|77549344|gb|ABA92141.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1929
Score = 38.1 bits (87), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 1424 SHNVAEYEALLHGLRIAISLGIRRLIVRGDSQLVVNQVMKEWSCLDD--NMTTYRQEVRK 1481
Query: 79 LKDKF 83
L++KF
Sbjct: 1482 LENKF 1486
>gi|28269460|gb|AAO38003.1| putative polyprotein [Oryza sativa Japonica Group]
gi|28875996|gb|AAO60005.1| putative GAG-POL precursor [Oryza sativa Japonica Group]
gi|108709647|gb|ABF97442.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1911
Score = 38.1 bits (87), Expect = 0.76, Method: Composition-based stats.
Identities = 33/102 (32%), Positives = 43/102 (42%), Gaps = 24/102 (23%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1325 DGSLSLQGAGAGVTMTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1384
Query: 47 RGDSKLVHMQVCCWLMEDQT--PGMAELCGEAKRLKDKFLSI 86
GDS+LV QVC E Q P M + +R++ F I
Sbjct: 1385 LGDSQLVVNQVC---KEYQCSDPQMDAYVRQVRRMERHFDGI 1423
>gi|62734612|gb|AAX96721.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
gi|77549138|gb|ABA91935.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1902
Score = 38.1 bits (87), Expect = 0.76, Method: Composition-based stats.
Identities = 33/102 (32%), Positives = 43/102 (42%), Gaps = 24/102 (23%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1407 DGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1466
Query: 47 RGDSKLVHMQVCCWLMEDQT--PGMAELCGEAKRLKDKFLSI 86
GDS+LV QVC E Q P M + +R++ F I
Sbjct: 1467 LGDSQLVVNQVC---KEYQCSDPQMDAYVRQVRRMERHFDGI 1505
>gi|147838859|emb|CAN74627.1| hypothetical protein VITISV_037486 [Vitis vinifera]
Length = 1980
Score = 38.1 bits (87), Expect = 0.76, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 25/39 (64%)
Query: 19 TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TTNN+ +Y + ILGL+ AL+ G V GDS LV Q+
Sbjct: 1465 TTNNIVEYEACILGLETALELGITQMDVLGDSNLVLRQL 1503
>gi|116309827|emb|CAH66864.1| H0307D04.9 [Oryza sativa Indica Group]
Length = 2003
Score = 38.1 bits (87), Expect = 0.76, Method: Composition-based stats.
Identities = 33/102 (32%), Positives = 43/102 (42%), Gaps = 24/102 (23%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1417 DGSLSLQGAGAGVTLTSPNGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1476
Query: 47 RGDSKLVHMQVCCWLMEDQT--PGMAELCGEAKRLKDKFLSI 86
GDS+LV QVC E Q P M + +R++ F I
Sbjct: 1477 LGDSQLVVNQVC---KEYQCSDPQMDAYVRQVRRMERHFDGI 1515
>gi|50838900|gb|AAT81661.1| putative retrotransposon protein [Oryza sativa Japonica Group]
gi|108709838|gb|ABF97633.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1878
Score = 38.1 bits (87), Expect = 0.76, Method: Composition-based stats.
Identities = 33/102 (32%), Positives = 43/102 (42%), Gaps = 24/102 (23%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1307 DGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1366
Query: 47 RGDSKLVHMQVCCWLMEDQT--PGMAELCGEAKRLKDKFLSI 86
GDS+LV QVC E Q P M + +R++ F I
Sbjct: 1367 LGDSQLVVNQVC---KEYQCSDPQMDAYVRQVRRMERHFDGI 1405
>gi|32489469|emb|CAE05823.1| OSJNBa0028M15.15 [Oryza sativa Japonica Group]
Length = 323
Score = 38.1 bits (87), Expect = 0.77, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 9/71 (12%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKL----VHMQVCCWLMEDQTPGMAELCGE 75
TNN A+Y L+ G++ A G V+GDS+L VH C +P +++ E
Sbjct: 37 TNNTAEYEGLLAGIREAAALGVKRLIVKGDSELVANKVHKDYKC-----SSPELSKYLAE 91
Query: 76 AKRLKDKFLSI 86
++LK +F +I
Sbjct: 92 VRKLKKRFDAI 102
>gi|108864097|gb|ABA91954.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1759
Score = 38.1 bits (87), Expect = 0.77, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1173 DGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRMAAGLGIRRLLV 1232
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1233 LGDSQLVVNQVC 1244
>gi|77551287|gb|ABA94084.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1756
Score = 37.7 bits (86), Expect = 0.79, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NV +Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 1269 SHNVVEYEALLHGLRIAVSLGIRRLIVRGDSQLVVNQVMKEWSCLDDN--MTAYRQEVRK 1326
Query: 79 LKDKF 83
L+DKF
Sbjct: 1327 LEDKF 1331
>gi|51854439|gb|AAU10818.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1974
Score = 37.7 bits (86), Expect = 0.79, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1435 DGSLSLQGAGAGVTLTSPSGDILRYLVRLDFLATNNMAEYEGLLAGLRLAAGLGIRRLLV 1494
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1495 LGDSQLVVNQVC 1506
>gi|48475133|gb|AAT44202.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1514
Score = 37.7 bits (86), Expect = 0.79, Method: Composition-based stats.
Identities = 32/99 (32%), Positives = 42/99 (42%), Gaps = 24/99 (24%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 967 DGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1026
Query: 47 RGDSKLVHMQVCCWLMEDQT--PGMAELCGEAKRLKDKF 83
GDS+LV QVC E Q P M + +R++ F
Sbjct: 1027 LGDSQLVVNQVC---KEYQCSDPQMDAYVRQVRRMERHF 1062
>gi|57863855|gb|AAW56896.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1295
Score = 37.7 bits (86), Expect = 0.80, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMED---QTPGMAELCGEA 76
TNN A+Y L+ G++ A G V+GDSKLV QV +D P +++ E
Sbjct: 912 TNNTAEYEGLLAGIRAAAALGVKRLVVKGDSKLVANQV----HKDYKCSNPELSKYLAEV 967
Query: 77 KRLKDKFLSI 86
++L+ +F I
Sbjct: 968 RKLEKRFDGI 977
>gi|77555199|gb|ABA97995.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1123
Score = 37.7 bits (86), Expect = 0.80, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 26/39 (66%)
Query: 19 TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TTNN A+Y ++++GL+ A G + VR DSKLV QV
Sbjct: 952 TTNNTAEYEAVLMGLREAKALGIQHLLVRTDSKLVASQV 990
>gi|77555466|gb|ABA98262.1| transposon protein, putative, unclassified [Oryza sativa Japonica
Group]
Length = 2013
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1427 DGSLSLQGAGAGVTLTSPNGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1486
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1487 LGDSQLVVNQVC 1498
>gi|77554433|gb|ABA97229.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 2027
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1441 DGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1500
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1501 LGDSQLVVNQVC 1512
>gi|77556771|gb|ABA99567.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 2027
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1441 DGSLSLQGAGAGVTLTSPTGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1500
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1501 LGDSQLVVNQVC 1512
>gi|77555630|gb|ABA98426.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 2030
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1444 DGSLSLQGAGAGVTLTSPSGAVLKYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1503
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1504 LGDSQLVVNQVC 1515
>gi|77556143|gb|ABA98939.1| transposon protein, putative, unclassified [Oryza sativa Japonica
Group]
Length = 2027
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1441 DGSLSLQGAGAGVTLTSPNGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1500
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1501 LGDSQLVVNQVC 1512
>gi|77553980|gb|ABA96776.1| transposon protein, putative, unclassified [Oryza sativa Japonica
Group]
Length = 1990
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1404 DGSLSLQGAGAGVTLTSPNGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1463
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1464 LGDSQLVVNQVC 1475
>gi|77551861|gb|ABA94658.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1965
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1418 DGSLSLQGAGAGVTLTSPSGDVLKYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1477
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1478 LGDSQLVVNQVC 1489
>gi|77548466|gb|ABA91263.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 2030
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1444 DGSLSLQGAGAGVTLTSPSGDVLRYLIRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1503
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1504 LGDSQLVVNQVC 1515
>gi|77551164|gb|ABA93961.1| retrotransposon protein, putative, unclassified, expressed [Oryza
sativa Japonica Group]
Length = 1986
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1400 DGSLSLQGAGAGVTLTSPSGDVLKYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1459
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1460 LGDSQLVVNQVC 1471
>gi|77552008|gb|ABA94805.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1659
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1148 DGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1207
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1208 LGDSQLVVNQVC 1219
>gi|77551718|gb|ABA94515.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1966
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1380 DGSLSLQGAGAGVTLTSPNGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1439
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1440 LGDSQLVVNQVC 1451
>gi|77552494|gb|ABA95291.1| transposon protein, putative, unclassified [Oryza sativa Japonica
Group]
Length = 1972
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1386 DGSLSLQGAGAGVTLTSPNGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1445
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1446 LGDSQLVVNQVC 1457
>gi|77552378|gb|ABA95175.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 2027
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1441 DGSLSLQGAGAGVTLTSPTGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1500
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1501 LGDSQLVVNQVC 1512
>gi|77552762|gb|ABA95559.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1922
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1336 DGSLSLQGAGAGVTLTSPSGDVLKYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1395
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1396 LGDSQLVVNQVC 1407
>gi|77552214|gb|ABA95011.1| transposon protein, putative, unclassified [Oryza sativa Japonica
Group]
Length = 2028
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1442 DGSLSLQGAGAGVTLTSPNGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1501
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1502 LGDSQLVVNQVC 1513
>gi|62734752|gb|AAX96861.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
gi|77549624|gb|ABA92421.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 2027
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1441 DGSLSLQGAGAGVTLTSPNGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1500
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1501 LGDSQLVVNQVC 1512
>gi|62734720|gb|AAX96829.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
gi|77550075|gb|ABA92872.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1914
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1328 DGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1387
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1388 LGDSQLVVNQVC 1399
>gi|62733775|gb|AAX95884.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1920
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1407 DGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1466
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1467 LGDSQLVVNQVC 1478
>gi|62734463|gb|AAX96572.1| transposon protein, putative, unclassified [Oryza sativa Japonica
Group]
gi|77552665|gb|ABA95462.1| transposon protein, putative, unclassified [Oryza sativa Japonica
Group]
Length = 2027
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1441 DGSLSLQGAGAGVTLTSPNGDVLKYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1500
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1501 LGDSQLVVNQVC 1512
>gi|62734552|gb|AAX96661.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
gi|77549477|gb|ABA92274.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 2027
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1441 DGSLSLQGAGAGVTLTSPTGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1500
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1501 LGDSQLVVNQVC 1512
>gi|22539075|gb|AAN01247.1| Putative retroelement [Oryza sativa Japonica Group]
gi|31431333|gb|AAP53128.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1627
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1287 DGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1346
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1347 LGDSQLVVNQVC 1358
>gi|18071410|gb|AAL58269.1|AC068923_11 putative gypsy-type retrotransposon [Oryza sativa Japonica Group]
Length = 1501
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 915 DGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 974
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 975 LGDSQLVVNQVC 986
>gi|31432945|gb|AAP54516.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
gi|62733606|gb|AAX95723.1| RNase H, putative [Oryza sativa Japonica Group]
Length = 969
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 383 DGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 442
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 443 LGDSQLVVNQVC 454
>gi|31430746|gb|AAP52619.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
gi|62733623|gb|AAX95740.1| RNase H, putative [Oryza sativa Japonica Group]
Length = 2025
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1439 DGSLSLQGAGAGVTLTSPTGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1498
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1499 LGDSQLVVNQVC 1510
>gi|38344350|emb|CAD40172.2| OSJNBa0061A09.11 [Oryza sativa Japonica Group]
Length = 2030
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1444 DGSLSLQGAGAGVTLTSPSGDVLKYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1503
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1504 LGDSQLVVNQVC 1515
>gi|38344591|emb|CAE05339.2| OSJNBa0079M09.11 [Oryza sativa Japonica Group]
Length = 2028
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1442 DGSLSLQGAGAGVTLISPNGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1501
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1502 LGDSQLVVNQVC 1513
>gi|38344531|emb|CAE05410.2| OSJNBa0036B17.7 [Oryza sativa Japonica Group]
Length = 982
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 396 DGSLSLQGAGAGVTLTLSSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 455
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 456 LGDSQLVVNQVC 467
>gi|38344457|emb|CAE04928.2| OSJNBa0017P10.5 [Oryza sativa Japonica Group]
gi|38345442|emb|CAE03294.2| OSJNBb0046P18.10 [Oryza sativa Japonica Group]
Length = 2027
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1441 DGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1500
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1501 LGDSQLVVNQVC 1512
>gi|38345405|emb|CAE03096.2| OSJNBa0017B10.11 [Oryza sativa Japonica Group]
Length = 1814
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1306 DGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1365
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1366 LGDSQLVVNQVC 1377
>gi|38347370|emb|CAE04960.2| OSJNBa0070D17.11 [Oryza sativa Japonica Group]
Length = 1646
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1154 DGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1213
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1214 LGDSQLVVNQVC 1225
>gi|38344136|emb|CAE01816.2| OSJNBa0041A02.3 [Oryza sativa Japonica Group]
gi|38345781|emb|CAD41821.2| OSJNBa0083N12.19 [Oryza sativa Japonica Group]
Length = 2027
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1441 DGSLSLQGAGAGVTLTSPTRDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1500
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1501 LGDSQLVVNQVC 1512
>gi|38345513|emb|CAE01797.2| OSJNBa0039K24.16 [Oryza sativa Japonica Group]
Length = 1881
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1372 DGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1431
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1432 LGDSQLVVNQVC 1443
>gi|218202553|gb|EEC84980.1| hypothetical protein OsI_32241 [Oryza sativa Indica Group]
Length = 590
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 4 DGSLSLQGAGAGVTLNSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 63
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 64 LGDSQLVVNQVC 75
>gi|116310901|emb|CAH67840.1| OSIGBa0159H11-OSIGBa0137A07.3 [Oryza sativa Indica Group]
Length = 2027
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1441 DGSLSLQGAGAGVTLTSPTGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1500
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1501 LGDSQLVVNQVC 1512
>gi|116310964|emb|CAH67900.1| OSIGBa0115K01-H0319F09.6 [Oryza sativa Indica Group]
Length = 1917
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1331 DGSLSLQGAGAGVTLTSPSRDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1390
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1391 LGDSQLVVNQVC 1402
>gi|116310368|emb|CAH67380.1| OSIGBa0159F11.4 [Oryza sativa Indica Group]
gi|116634846|emb|CAH67296.1| OSIGBa0103O01.14 [Oryza sativa Indica Group]
Length = 1965
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1379 DGSLSLQGAGAGVTLTSPSGDVLRYLVHLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1438
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1439 LGDSQLVVNQVC 1450
>gi|116311008|emb|CAH67941.1| H0303A11-B0406H05.1 [Oryza sativa Indica Group]
Length = 688
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 251 DGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 310
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 311 LGDSQLVVNQVC 322
>gi|116310476|emb|CAH67479.1| H0805A05.9 [Oryza sativa Indica Group]
Length = 1930
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1325 DGSLSLQGAGAGVTLTSLSGDVLRYLVHLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1384
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1385 LGDSQLVVNQVC 1396
>gi|116309575|emb|CAH66634.1| OSIGBa0140A01.2 [Oryza sativa Indica Group]
Length = 904
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 318 DGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 377
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 378 LGDSQLVVNQVC 389
>gi|116309248|emb|CAH66336.1| OSIGBa0097I24.4 [Oryza sativa Indica Group]
Length = 2027
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1441 DGSLSLQGAGAGVTLTSPNGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1500
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1501 LGDSQLVVNQVC 1512
>gi|110289334|gb|ABG66166.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1417
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 831 DGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 890
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 891 LGDSQLVVNQVC 902
>gi|108864177|gb|ABA92306.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1920
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1407 DGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1466
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1467 LGDSQLVVNQVC 1478
>gi|108862341|gb|ABA96229.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1850
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1264 DGSLSLQGAGAGVTLTSPSGDVLRYLVLLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1323
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1324 LGDSQLVVNQVC 1335
>gi|108862160|gb|ABA95741.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1809
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1295 DGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1354
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1355 LGDSQLVVNQVC 1366
>gi|108706450|gb|ABF94245.1| transposon protein, putative, unclassified [Oryza sativa Japonica
Group]
Length = 1995
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1409 DGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1468
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1469 LGDSQLVVNQVC 1480
>gi|108707293|gb|ABF95088.1| transposon protein, putative, unclassified [Oryza sativa Japonica
Group]
Length = 1965
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1379 DGSLSLQGAGAGVTITSPSGDVLKYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1438
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1439 LGDSQLVVNQVC 1450
>gi|108711672|gb|ABF99467.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1992
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1406 DGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1465
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1466 LGDSQLVVNQVC 1477
>gi|108707947|gb|ABF95742.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1926
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1340 DGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1399
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1400 LGDSQLVVNQVC 1411
>gi|108710868|gb|ABF98663.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1882
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1304 DGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1363
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1364 LGDSQLVVNQVC 1375
>gi|108711681|gb|ABF99476.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1840
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1301 DGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1360
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1361 LGDSQLVVNQVC 1372
>gi|108708250|gb|ABF96045.1| transposon protein, putative, unclassified [Oryza sativa Japonica
Group]
Length = 2027
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1441 DGSLSLQGAGAGVTLTSPNGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1500
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1501 LGDSQLVVNQVC 1512
>gi|108706138|gb|ABF93933.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 943
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 428 DGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 487
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 488 LGDSQLVVNQVC 499
>gi|108708257|gb|ABF96052.1| transposon protein, putative, unclassified [Oryza sativa Japonica
Group]
Length = 2027
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1441 DGSLSLQGAGAGVTLTSPNGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1500
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1501 LGDSQLVVNQVC 1512
>gi|108706364|gb|ABF94159.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 2025
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1439 DGSLSLQGAGAGVTLTSPTGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1498
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1499 LGDSQLVVNQVC 1510
>gi|90265064|emb|CAH67689.1| H0510A06.14 [Oryza sativa Indica Group]
gi|116309934|emb|CAH66966.1| H0525D09.6 [Oryza sativa Indica Group]
Length = 2027
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1441 DGSLSLQGAGAGVTLTSPNGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1500
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1501 LGDSQLVVNQVC 1512
>gi|62733067|gb|AAX95184.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 963
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 377 DGSLSLQGAGAGVTLTSPTGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 436
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 437 LGDSQLVVNQVC 448
>gi|55168172|gb|AAV44039.1| putatve polyprotein [Oryza sativa Japonica Group]
Length = 1905
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1326 DGSLSLQGAGAGVTLTSPTGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1385
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1386 LGDSQLVVNQVC 1397
>gi|53981931|gb|AAV25049.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1869
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1317 DGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1376
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1377 LGDSQLVVNQVC 1388
>gi|52353709|gb|AAU44275.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 2027
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1441 DGSLSLQGAGAGVTLTSPTGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1500
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1501 LGDSQLVVNQVC 1512
>gi|52353716|gb|AAU44282.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1992
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1406 DGSLSLQGAGAGVTLTSPTGDVLRYLDRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1465
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1466 LGDSQLVVNQVC 1477
>gi|52353359|gb|AAU43927.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 2027
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1441 DGSLSLQGAGAGVTLTSPTGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1500
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1501 LGDSQLVVNQVC 1512
>gi|51854447|gb|AAU10826.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1970
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1384 DGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1443
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1444 LGDSQLVVNQVC 1455
>gi|51038116|gb|AAT93919.1| putative polyprotein [Oryza sativa Japonica Group]
gi|55168063|gb|AAV43931.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1989
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1403 DGSLSLQGAGAGVTLTSPNGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1462
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1463 LGDSQLVVNQVC 1474
>gi|50540760|gb|AAT77916.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 2010
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1424 DGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1483
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1484 LGDSQLVVNQVC 1495
>gi|50540761|gb|AAT77917.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1898
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1359 DGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1418
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1419 LGDSQLVVNQVC 1430
>gi|50428713|gb|AAT77064.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1807
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1229 DGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1288
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1289 LGDSQLVVNQVC 1300
>gi|50300522|gb|AAT73664.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1221
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 635 DGSLSLQGAGAGVTLTSPTGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 694
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 695 LGDSQLVVNQVC 706
>gi|46485872|gb|AAS98497.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 2027
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1441 DGSLSLQGAGAGVTLTSPTGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1500
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1501 LGDSQLVVNQVC 1512
>gi|45680421|gb|AAS75222.1| putative polyprotein [Oryza sativa Japonica Group]
gi|48843831|gb|AAT47090.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 2026
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1440 DGSLSLQGAGAGVTLISPTGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1499
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1500 LGDSQLVVNQVC 1511
>gi|54306087|gb|AAV33321.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 2027
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1441 DGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1500
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1501 LGDSQLVVNQVC 1512
>gi|38605802|emb|CAE05270.2| OSJNBb0014D23.4 [Oryza sativa Japonica Group]
Length = 1684
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1313 DGSLSLQGAGAGVTLTSPSGDILRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1372
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1373 LGDSQLVVNQVC 1384
>gi|38567957|emb|CAE75910.1| OSJNBb0115I21.13 [Oryza sativa Japonica Group]
Length = 1938
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1352 DGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1411
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1412 LGDSQLVVNQVC 1423
>gi|38567773|emb|CAE76060.1| B1248C03.19 [Oryza sativa Japonica Group]
gi|38567781|emb|CAE76067.1| B1340F09.5 [Oryza sativa Japonica Group]
Length = 1958
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1403 DGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1462
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1463 LGDSQLVVNQVC 1474
>gi|34015289|gb|AAQ56480.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 2027
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1441 DGSLSLQGAGAGVTLTSPTGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1500
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1501 LGDSQLVVNQVC 1512
>gi|34015241|gb|AAQ56433.1| putative gag-pol precursor [Oryza sativa Japonica Group]
Length = 979
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 393 DGSLSLQGAGAGVTLTSPTGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 452
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 453 LGDSQLVVNQVC 464
>gi|38346981|emb|CAD40289.2| OSJNBb0062H02.6 [Oryza sativa Japonica Group]
Length = 2001
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1441 DGSLSLQGAGAGVTLTSPNGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1500
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1501 LGDSQLVVNQVC 1512
>gi|38346434|emb|CAD40221.2| OSJNBa0019J05.19 [Oryza sativa Japonica Group]
Length = 1969
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1441 DGSLSLQGAGAGVTLTSPNGDVLKYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1500
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1501 LGDSQLVVNQVC 1512
>gi|38346851|emb|CAD39933.2| OSJNBa0091C12.11 [Oryza sativa Japonica Group]
Length = 1992
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1406 DGSLSLQGAGAGVTLTSPNGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1465
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1466 LGDSQLVVNQVC 1477
>gi|38344600|emb|CAD39966.2| OSJNBa0072D08.5 [Oryza sativa Japonica Group]
Length = 1862
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1340 DGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1399
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1400 LGDSQLVVNQVC 1411
>gi|32492152|emb|CAE04690.1| OSJNBb0015D13.5 [Oryza sativa Japonica Group]
Length = 1814
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1377 DGSLSLQGAGAGVTLTSPSGDVLKYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1436
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1437 LGDSQLVVNQVC 1448
>gi|38569156|emb|CAE03668.3| OSJNBa0042N22.10 [Oryza sativa Japonica Group]
Length = 1900
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1345 DGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1404
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1405 LGDSQLVVNQVC 1416
>gi|38347469|emb|CAE05289.2| OSJNBa0084N21.7 [Oryza sativa Japonica Group]
Length = 2023
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1437 DGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1496
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1497 LGDSQLVVNQVC 1508
>gi|38346291|emb|CAE04174.2| OSJNBa0029C04.4 [Oryza sativa Japonica Group]
Length = 2027
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1441 DGSLSLQGAGAGVTLTSPNGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1500
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1501 LGDSQLVVNQVC 1512
>gi|38606534|emb|CAE06012.3| OSJNBa0016O02.22 [Oryza sativa Japonica Group]
Length = 2027
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1441 DGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1500
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1501 LGDSQLVVNQVC 1512
>gi|38344225|emb|CAE03695.2| OSJNBb0026E15.13 [Oryza sativa Japonica Group]
Length = 1952
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1418 DGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1477
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1478 LGDSQLVVNQVC 1489
>gi|38344801|emb|CAE03002.2| OSJNBa0043L09.21 [Oryza sativa Japonica Group]
Length = 2028
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1442 DGSLSLQGAGAGVTLTSPNGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1501
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1502 LGDSQLVVNQVC 1513
>gi|38344478|emb|CAE05493.2| OSJNBa0022H21.13 [Oryza sativa Japonica Group]
Length = 1993
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1407 DGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1466
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1467 LGDSQLVVNQVC 1478
>gi|38346963|emb|CAE03902.2| OSJNBb0026I12.10 [Oryza sativa Japonica Group]
Length = 2009
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1427 DGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1486
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1487 LGDSQLVVNQVC 1498
>gi|38344645|emb|CAE05078.2| OSJNBa0094P09.17 [Oryza sativa Japonica Group]
Length = 2027
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1441 DGSLSLQGAGAGVTLTSPTGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1500
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1501 LGDSQLVVNQVC 1512
>gi|32489819|emb|CAE04563.1| OSJNBb0039L24.2 [Oryza sativa Japonica Group]
gi|38346770|emb|CAD41151.2| OSJNBa0081C01.21 [Oryza sativa Japonica Group]
Length = 2027
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1441 DGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1500
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1501 LGDSQLVVNQVC 1512
>gi|32488015|emb|CAE02878.1| OSJNBb0022F23.15 [Oryza sativa Japonica Group]
Length = 1612
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1237 DGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1296
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1297 LGDSQLVVNQVC 1308
>gi|38344443|emb|CAE05649.2| OSJNBa0038O10.15 [Oryza sativa Japonica Group]
Length = 1989
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1403 DGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFQATNNMAEYEGLLAGLRVAAGLGIRRLLV 1462
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1463 LGDSQLVVNQVC 1474
>gi|70663960|emb|CAE02013.3| OSJNBa0079A21.2 [Oryza sativa Japonica Group]
Length = 1988
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1361 DGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1420
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1421 LGDSQLVVNQVC 1432
>gi|38346552|emb|CAE02129.2| OSJNBa0035M09.13 [Oryza sativa Japonica Group]
Length = 1297
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1073 DGSLSLQGAGAGVTLTSPNGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1132
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1133 LGDSQLVVNQVC 1144
>gi|38344116|emb|CAE01723.2| OSJNBb0050O03.13 [Oryza sativa Japonica Group]
Length = 2030
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1444 DGSLSLQGAGAGVTLTSPSGDVLKYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1503
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1504 LGDSQLVVNQVC 1515
>gi|38344121|emb|CAE01728.2| OSJNBb0050O03.18 [Oryza sativa Japonica Group]
Length = 2015
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1429 DGSLSLQGAGAGVTLTSPNGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1488
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1489 LGDSQLVVNQVC 1500
>gi|29788850|gb|AAP03396.1| putative GAG-POL precursor [Oryza sativa Japonica Group]
gi|40538947|gb|AAR87204.1| putative GAG-POL precursor [Oryza sativa Japonica Group]
gi|108710340|gb|ABF98135.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 2028
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1442 DGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1501
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1502 LGDSQLVVNQVC 1513
>gi|38346467|emb|CAE02120.2| OSJNBa0019G23.15 [Oryza sativa Japonica Group]
Length = 1938
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1352 DGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1411
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1412 LGDSQLVVNQVC 1423
>gi|22773262|gb|AAN06868.1| Putative polyprotein [Oryza sativa Japonica Group]
gi|108706316|gb|ABF94111.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 2002
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1416 DGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1475
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1476 LGDSQLVVNQVC 1487
>gi|19920185|gb|AAM08617.1|AC107314_8 Putative retroelement [Oryza sativa Japonica Group]
Length = 1783
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1233 DGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1292
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1293 LGDSQLVVNQVC 1304
>gi|38345112|emb|CAE01613.2| OSJNBa0067G20.11 [Oryza sativa Japonica Group]
Length = 2027
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1441 DGSLSLQGAGAGVTLTSPTGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1500
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1501 LGDSQLVVNQVC 1512
>gi|29126343|gb|AAO66535.1| transposon protein, putative, unclassified [Oryza sativa Japonica
Group]
gi|108712154|gb|ABF99949.1| transposon protein, putative, unclassified [Oryza sativa Japonica
Group]
Length = 2026
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1440 DGSLSLQGAGAGVTLTSPNGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1499
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1500 LGDSQLVVNQVC 1511
>gi|29126347|gb|AAO66539.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
gi|108712176|gb|ABF99971.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 2027
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1441 DGSLSLQGAGAGVTLTSPNGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1500
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1501 LGDSQLVVNQVC 1512
>gi|77554253|gb|ABA97049.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1399
Score = 37.7 bits (86), Expect = 0.83, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 7/67 (10%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMEDQT---PGMAELCGEA 76
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV M++ + M E
Sbjct: 1255 SHNVAEYEALLHGLRIAISLGIRRLTVRGDSQLVVNQV----MKEWSCLHDNMTAYRQEV 1310
Query: 77 KRLKDKF 83
+L+DKF
Sbjct: 1311 GKLEDKF 1317
>gi|30089739|gb|AAP20843.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
Japonica Group]
gi|108708895|gb|ABF96690.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1547
Score = 37.7 bits (86), Expect = 0.84, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 7/70 (10%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMED---QTPGMAELCGEA 76
TNN+A+Y L+ G++ A G V+GDS+LV QV +D +P +++ E
Sbjct: 1170 TNNIAEYERLLAGIRAAAALGVKRLVVKGDSELVANQV----HKDYKCSSPELSKYLAEV 1225
Query: 77 KRLKDKFLSI 86
++L+ +F I
Sbjct: 1226 RKLEKRFDGI 1235
>gi|50838954|gb|AAT81715.1| putative retrotransposon protein [Oryza sativa Japonica Group]
gi|108710483|gb|ABF98278.1| transposon protein, putative, unclassified [Oryza sativa Japonica
Group]
Length = 564
Score = 37.7 bits (86), Expect = 0.92, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMED---QTPGMAELCGEA 76
TNN AKY L+ G++ A G V+GDS+LV QV +D P +++ E
Sbjct: 122 TNNTAKYEGLLAGIRAAAALGVKRLIVKGDSELVANQV----HKDYKCSNPELSKYLAEV 177
Query: 77 KRLKDKFLSI 86
++L+ +F I
Sbjct: 178 RKLEKRFDGI 187
>gi|254386860|ref|ZP_05002147.1| phosphoglycerate mutase [Streptomyces sp. Mg1]
gi|194345692|gb|EDX26658.1| phosphoglycerate mutase [Streptomyces sp. Mg1]
Length = 246
Score = 37.7 bits (86), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 16 VGITTNNVAKYGSLILGLKYALQ-KGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELC 73
+G+ TNNVA+Y LI GLK A + VR DSKLV Q+ W ++ P M L
Sbjct: 87 IGVATNNVAEYKGLIAGLKAARELAPDAQVLVRMDSKLVVEQMSGRWKIKH--PDMKPLA 144
Query: 74 GEA 76
EA
Sbjct: 145 AEA 147
>gi|116309612|emb|CAH66667.1| OSIGBa0110B10.4 [Oryza sativa Indica Group]
Length = 1065
Score = 37.7 bits (86), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 722 SHNVAEYEVLLHGLRIAISLGIRRLIVRGDSQLVVNQVMKEWSCLDD--NMTAYRQEVRK 779
Query: 79 LKDKF 83
L+D+F
Sbjct: 780 LEDRF 784
>gi|62734355|gb|AAX96464.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
gi|77549768|gb|ABA92565.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1789
Score = 37.7 bits (86), Expect = 0.95, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1243 DGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYERLLAGLRVAAGLGIRRLLV 1302
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1303 LGDSQLVVNQVC 1314
>gi|312879052|ref|ZP_07738852.1| ribonuclease H [Aminomonas paucivorans DSM 12260]
gi|310782343|gb|EFQ22741.1| ribonuclease H [Aminomonas paucivorans DSM 12260]
Length = 133
Score = 37.7 bits (86), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 2 LRADDGSLIYN-HNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
L DG +++ +G+ TNN A+Y +L+ L+ A ++G V GDS+LV QV
Sbjct: 23 LEDQDGKVLWECSQYLGVRTNNEAEYEALLRLLEEARRRGVAELEVCGDSRLVVCQV 79
>gi|78708524|gb|ABB47499.1| transposon protein, putative, unclassified [Oryza sativa Japonica
Group]
Length = 108
Score = 37.7 bits (86), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 11/70 (15%)
Query: 19 TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV-----CCWLMEDQTPGMAELC 73
TNN+AKY L GL+ A+ G V+GDS+LV QV C P +A+
Sbjct: 36 ATNNIAKYEGLPSGLRAAVALGVKRLIVKGDSELVANQVHKDYKCS------NPELAKYL 89
Query: 74 GEAKRLKDKF 83
+ ++L+ KF
Sbjct: 90 TDVRKLERKF 99
>gi|38344571|emb|CAE05529.2| OSJNBa0053B21.3 [Oryza sativa Japonica Group]
gi|38347235|emb|CAE05030.2| OSJNBa0044M19.17 [Oryza sativa Japonica Group]
Length = 1802
Score = 37.7 bits (86), Expect = 0.96, Method: Composition-based stats.
Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 21/100 (21%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1328 DGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVATGLGIRRLLV 1387
Query: 47 RGDSKLVHMQVCCWLMEDQTPGMAELCGEAKRLKDKFLSI 86
GDS+LV QV +L++ P E +R+ +++ +
Sbjct: 1388 LGDSQLVVNQV--YLIDKTLPEDREGSERVQRISKRYVRV 1425
>gi|15827864|ref|NP_302127.1| bifunctional RNase H/acid phosphatase [Mycobacterium leprae TN]
gi|221230341|ref|YP_002503757.1| bifunctional RNase H/acid phosphatase [Mycobacterium leprae Br4923]
gi|3150239|emb|CAA19219.1| hypothetical protein MLCB1243.38 [Mycobacterium leprae]
gi|13093416|emb|CAC30588.1| conserved hypothetical protein [Mycobacterium leprae]
gi|219933448|emb|CAR71732.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
Length = 371
Score = 37.7 bits (86), Expect = 0.96, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 9 LIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTP 67
L +G TNNVA+Y +LI GL A++ G V DSKLV Q+ W ++ P
Sbjct: 33 LTETKQAIGRATNNVAEYRALIAGLDDAVKMGATEAEVLMDSKLVVEQMSGRWKVKH--P 90
Query: 68 GMAELCGEAKRLKDKFLSI 86
+ EL A+ L + S+
Sbjct: 91 DLIELYVHAQTLASRLASV 109
>gi|32490368|emb|CAE05042.1| OSJNBa0049H08.3 [Oryza sativa Japonica Group]
gi|38346750|emb|CAD40760.2| OSJNBa0081G05.13 [Oryza sativa Japonica Group]
Length = 1065
Score = 37.7 bits (86), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 722 SHNVAEYEVLLHGLRIAISLGIRRLIVRGDSQLVVNQVMKEWSCLDD--NMTAYRQEVRK 779
Query: 79 LKDKF 83
L+D+F
Sbjct: 780 LEDRF 784
>gi|62734706|gb|AAX96815.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
Length = 787
Score = 37.7 bits (86), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 11/69 (15%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV-----CCWLMEDQTPGMAELCG 74
TNN A+Y L++G++ A G V+GDS+LV QV C +P +++
Sbjct: 287 TNNTAEYEGLLIGIRAAAALGVKRLIVKGDSELVANQVHKDYKCS------SPELSKYLA 340
Query: 75 EAKRLKDKF 83
E ++L+ +F
Sbjct: 341 EVRKLEKRF 349
>gi|108710943|gb|ABF98738.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 952
Score = 37.7 bits (86), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 481 SHNVAEYEALLHGLRIAISLGIRRLIVRGDSQLVVNQVMKEWSCLDD--NMTAYRQEVRK 538
Query: 79 LKDKF 83
L++KF
Sbjct: 539 LENKF 543
>gi|18266640|gb|AAL67586.1|AC018929_8 putative GAG-POL precursor [Oryza sativa Japonica Group]
gi|31433656|gb|AAP55140.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1099
Score = 37.7 bits (86), Expect = 1.0, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ VRGDS+LV QV W D M E ++
Sbjct: 563 SHNVAEYEALLHGLRIAISLSIRRLIVRGDSQLVVNQVMQEWSCLDDN--MTAYRQEVRK 620
Query: 79 LKDKF 83
L+DKF
Sbjct: 621 LEDKF 625
>gi|15217203|gb|AAK92547.1|AC051624_5 Putative retroelement [Oryza sativa Japonica Group]
gi|31431038|gb|AAP52876.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1963
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 31/72 (43%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN A+Y L+ GL+ A G V
Sbjct: 1377 DGSLSLQGAGAGVTLSSPSGDVLRYLVRLDFRATNNTAEYEGLLAGLRVAAGLGIRRLLV 1436
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1437 LGDSQLVVNQVC 1448
>gi|147854500|emb|CAN80708.1| hypothetical protein VITISV_033567 [Vitis vinifera]
Length = 944
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 25/39 (64%)
Query: 19 TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
T NN+ +Y + ILGL+ AL+ G +V GDS LV Q+
Sbjct: 664 TMNNIVEYEACILGLETALELGIRQMKVFGDSNLVLRQI 702
>gi|32489155|emb|CAE04107.1| OSJNBa0096F01.15 [Oryza sativa Japonica Group]
gi|32489171|emb|CAE04552.1| OSJNBa0052P16.1 [Oryza sativa Japonica Group]
Length = 1384
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 24/39 (61%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC 58
TNN+A+Y L+ GL+ A G V GDS+LV QVC
Sbjct: 831 TNNIAEYEGLLAGLRVAAGLGIRRLLVLGDSQLVVNQVC 869
>gi|383785249|ref|YP_005469819.1| ribonuclease H [Leptospirillum ferrooxidans C2-3]
gi|383084162|dbj|BAM07689.1| putative ribonuclease H [Leptospirillum ferrooxidans C2-3]
Length = 134
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMEDQTPGMAELCGEAKRL 79
TNNVA+Y +++ GL A + G VR DS+LV QV + ++PG+ L + L
Sbjct: 41 TNNVAEYEAMVAGLTAACELGIRQVVVRADSELVIRQV-TGRYKVKSPGLFPLYQKVMEL 99
Query: 80 KDKFLSI 86
+F I
Sbjct: 100 SGRFDRI 106
>gi|356540662|ref|XP_003538805.1| PREDICTED: uncharacterized protein LOC100806642 [Glycine max]
Length = 1995
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 27/41 (65%)
Query: 17 GITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
G+ +NN A+Y +LI GL+ + G N +RGDS+LV Q+
Sbjct: 1462 GLCSNNEAEYEALITGLEILISLGARNVNIRGDSELVLRQL 1502
>gi|356502140|ref|XP_003519879.1| PREDICTED: uncharacterized protein LOC100786989 [Glycine max]
Length = 2002
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 27/41 (65%)
Query: 17 GITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
G+ +NN A+Y +LI GL+ + G N +RGDS+LV Q+
Sbjct: 1505 GLCSNNEAEYEALITGLEILISLGARNVNIRGDSELVLRQL 1545
>gi|108864294|gb|ABA92886.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 772
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 11/69 (15%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV-----CCWLMEDQTPGMAELCG 74
TNN A+Y L++G++ A G V+GDS+LV QV C +P +++
Sbjct: 287 TNNTAEYEGLLIGIRAAAALGVKRLIVKGDSELVANQVHKDYKCS------SPELSKYLA 340
Query: 75 EAKRLKDKF 83
E ++L+ +F
Sbjct: 341 EVRKLEKRF 349
>gi|440700793|ref|ZP_20883028.1| ribonuclease HI [Streptomyces turgidiscabies Car8]
gi|440276655|gb|ELP64887.1| ribonuclease HI [Streptomyces turgidiscabies Car8]
Length = 386
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 16 VGITTNNVAKYGSLILGLKYALQ-KGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELC 73
+GI TNNVA+Y LI GL+ A Q VR DSKLV Q+ W ++ P M L
Sbjct: 41 IGIATNNVAEYRGLIAGLRAAHQLDPDATVHVRMDSKLVVEQMSGRWKIKH--PDMKPLA 98
Query: 74 GEAKRL 79
EA ++
Sbjct: 99 AEAAKV 104
>gi|359483561|ref|XP_003632976.1| PREDICTED: uncharacterized protein LOC100852629 [Vitis vinifera]
Length = 2289
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 18 ITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
+ TNN+ +Y + ILGL+ AL+ G V GDS LV Q+
Sbjct: 1742 LATNNIVEYEACILGLETALELGIRQMEVFGDSNLVLRQI 1781
>gi|359474674|ref|XP_003631510.1| PREDICTED: uncharacterized protein LOC100243172 [Vitis vinifera]
Length = 2076
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 18 ITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
+ TNN+ +Y + ILGL+ AL+ G V GDS LV Q+
Sbjct: 1511 LATNNIVEYEACILGLETALELGIRQMEVFGDSNLVLRQI 1550
>gi|147845162|emb|CAN81618.1| hypothetical protein VITISV_001999 [Vitis vinifera]
Length = 674
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 18 ITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
+ TNN+ +Y + ILGL+ AL+ G V GDS LV Q+
Sbjct: 135 LATNNIVEYEACILGLETALELGIRQMEVFGDSNLVLRQI 174
>gi|147775414|emb|CAN64945.1| hypothetical protein VITISV_019048 [Vitis vinifera]
Length = 1929
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 18 ITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
+ TNN+ +Y + ILGL+ AL+ G V GDS LV Q+
Sbjct: 1450 LATNNIVEYEACILGLETALELGIRQMEVFGDSNLVLRQI 1489
>gi|29788858|gb|AAP03404.1| putative GAG-POL precursor [Oryza sativa Japonica Group]
Length = 930
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 459 SHNVAEYEALLHGLRIAISLGIRRLIVRGDSQLVVNQVMKEWSCLDD--NMTAYRQEVRK 516
Query: 79 LKDKF 83
L++KF
Sbjct: 517 LENKF 521
>gi|77554749|gb|ABA97545.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1793
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1207 DGSLSLQGAGAGVTLTSPRGDVLRYLVRLDFRATNNMAEYEGLLAGLRVASGLGIRRLLV 1266
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1267 LGDSQLVVNQVC 1278
>gi|395769907|ref|ZP_10450422.1| bifunctional RNase H/acid phosphatase [Streptomyces acidiscabies
84-104]
Length = 442
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 31/80 (38%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Query: 4 ADDGSLIYNHNG-VGITTNNVAKYGSLILGLK--YALQKGFFNFRVRGDSKLVHMQVCC- 59
AD G L+ +G +G+ TNNVA+Y L+ G + +AL VR DSKLV Q+
Sbjct: 47 ADTGELLAERSGFLGVATNNVAEYNGLLAGARAAHALNPS-AAVHVRMDSKLVVEQMSGR 105
Query: 60 WLMEDQTPGMAELCGEAKRL 79
W ++ P + L EA RL
Sbjct: 106 WQIKH--PALRPLAIEAARL 123
>gi|356510705|ref|XP_003524076.1| PREDICTED: uncharacterized protein LOC100807907 [Glycine max]
Length = 2060
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 27/41 (65%)
Query: 17 GITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
G+ +NN A+Y +LI GL+ + G N +RGDS+LV Q+
Sbjct: 1534 GLCSNNEAEYEALIAGLEILISLGARNVNIRGDSELVLRQL 1574
>gi|77552456|gb|ABA95253.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1032
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A G VRGDS+LV QV W D M E ++
Sbjct: 496 SHNVAEYEALLHGLRIANSLGIKRLIVRGDSQLVVNQVMKEWSCLDDN--MMAYRQEVRK 553
Query: 79 LKDKF 83
L+DKF
Sbjct: 554 LEDKF 558
>gi|359475743|ref|XP_003631748.1| PREDICTED: uncharacterized protein LOC100854902 [Vitis vinifera]
Length = 1829
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 19/38 (50%), Positives = 24/38 (63%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TNN+ +Y + ILGL+ AL+ G V GDS LV QV
Sbjct: 1288 TNNIVEYEACILGLETALELGIRQMEVFGDSNLVLRQV 1325
>gi|147801322|emb|CAN77032.1| hypothetical protein VITISV_015343 [Vitis vinifera]
Length = 2281
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 19/38 (50%), Positives = 24/38 (63%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TNN+ +Y + ILGL+ AL+ G V GDS LV QV
Sbjct: 1767 TNNIVEYEACILGLETALELGIRQMEVFGDSNLVLRQV 1804
>gi|147773882|emb|CAN71874.1| hypothetical protein VITISV_002497 [Vitis vinifera]
Length = 554
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 19 TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TTNN+ +Y + ILGL+ L+ G V GDS LV Q+
Sbjct: 186 TTNNIVEYEACILGLETTLELGITQMEVFGDSNLVLRQI 224
>gi|77556646|gb|ABA99442.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1767
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 9/56 (16%)
Query: 7 GSLIYNHNGVGI---------TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLV 53
+++++ NGV I TTNN A+Y +++LGL+ A G +R DSKLV
Sbjct: 1213 AAVLFSPNGVSIWYAARLQFDTTNNAAEYEAVLLGLRKAKALGVRRLLIRTDSKLV 1268
>gi|62732681|gb|AAX94800.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77549608|gb|ABA92405.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 436
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 19 TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLV 53
TTNNVA+Y +++LGL+ A G +R DSKLV
Sbjct: 120 TTNNVAEYEAILLGLRKAKALGIRRLLIRTDSKLV 154
>gi|356569818|ref|XP_003553092.1| PREDICTED: uncharacterized protein LOC100807161 [Glycine max]
Length = 2650
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 17 GITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC 58
G+ +NN A+Y +LI GL+ + G N VRGDS+LV Q+
Sbjct: 2072 GLCSNNEAEYEALITGLEILISLGARNVNVRGDSELVLKQLT 2113
>gi|300780762|ref|ZP_07090616.1| ribonuclease HI [Corynebacterium genitalium ATCC 33030]
gi|300532469|gb|EFK53530.1| ribonuclease HI [Corynebacterium genitalium ATCC 33030]
Length = 383
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 13/94 (13%)
Query: 4 ADDGSLIYNHNGVGI----------TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLV 53
A GS++Y+ +G + ++NNVA+Y L+ GL+ A G + V DSKLV
Sbjct: 18 AGSGSVLYDASGATLAEIAYVVGKKSSNNVAEYCGLLRGLEAARDLGATDVDVFMDSKLV 77
Query: 54 HMQVCC-WLMEDQTPGMAELCGEAKRLKDKFLSI 86
Q+ W ++ P M +L EA+ L F S+
Sbjct: 78 VEQMAGRWKIKH--PDMKKLAFEARDLAAGFDSV 109
>gi|53981366|gb|AAV24920.1| putative polyprotein [Oryza sativa Japonica Group]
gi|55733857|gb|AAV59364.1| unknown protein [Oryza sativa Japonica Group]
Length = 1279
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 9/60 (15%)
Query: 7 GSLIYNHNGVGI---------TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
+++++ NGV I TTNN A+Y +++LGL+ A G +R DSKLV V
Sbjct: 1119 AAVLFSPNGVPIRYAARLQFDTTNNAAEYEAVLLGLRKAKALGIRRLLIRTDSKLVTSHV 1178
>gi|116310874|emb|CAH67815.1| OSIGBa0138H21-OSIGBa0138E01.6 [Oryza sativa Indica Group]
Length = 1054
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 33/71 (46%), Gaps = 19/71 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL GVG+T TNN+A+Y L+ GL+ A + G V
Sbjct: 585 DGSLNLQGAGVGVTLTSPNGDVLKYVVRLDIRATNNMAEYEGLLAGLRAAAEMGIRRLLV 644
Query: 47 RGDSKLVHMQV 57
GDS+LV QV
Sbjct: 645 LGDSQLVVNQV 655
>gi|58531980|emb|CAE03622.2| OSJNBb0003B01.13 [Oryza sativa Japonica Group]
Length = 1144
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 33/71 (46%), Gaps = 19/71 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL GVG+T TNN+A+Y L+ GL+ A + G V
Sbjct: 585 DGSLNLQGAGVGVTLTSPNGDVLKYVVRLDIRATNNMAEYEGLLAGLRAAAEMGIRRLLV 644
Query: 47 RGDSKLVHMQV 57
GDS+LV QV
Sbjct: 645 LGDSQLVVNQV 655
>gi|108864597|gb|ABA94871.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1965
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1379 DGSLSLQGVGAGVTLTSPSRDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1438
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1439 LGDSQLVVNQVC 1450
>gi|389863557|ref|YP_006365797.1| phosphoglycerate mutase [Modestobacter marinus]
gi|388485760|emb|CCH87308.1| Phosphoglycerate mutase [Modestobacter marinus]
Length = 369
Score = 37.4 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 30/77 (38%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 4 ADDGSLIYNH-NGVGITTNNVAKYGSLILGLKYALQ-KGFFNFRVRGDSKLVHMQVCC-W 60
A+ G L+ VG TNNVA+YG L+ GL+ AL + VR DSKLV Q+ W
Sbjct: 34 AETGRLLAERAESVGRATNNVAEYGGLVAGLQAALDLDPTASVEVRMDSKLVVEQMSGRW 93
Query: 61 LMEDQTPGMAELCGEAK 77
++ P M +L +A+
Sbjct: 94 QIKH--PDMKKLAVQAR 108
>gi|62733054|gb|AAX95171.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
Japonica Group]
gi|77549581|gb|ABA92378.1| retrotransposon protein, putative, Ty3-gypsy subclass, expressed
[Oryza sativa Japonica Group]
Length = 2041
Score = 37.4 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 7/70 (10%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMED---QTPGMAELCGEA 76
TNN+A+Y L+ G++ A G V+GDS+LV QV +D P +++ E
Sbjct: 1665 TNNIAEYEGLLAGIRAAAALGVKRLIVKGDSELVANQV----HKDYKCSNPELSKYLAEV 1720
Query: 77 KRLKDKFLSI 86
++L+ +F I
Sbjct: 1721 RKLEKRFDGI 1730
>gi|337291198|ref|YP_004630219.1| hypothetical protein CULC22_01590 [Corynebacterium ulcerans
BR-AD22]
gi|397654460|ref|YP_006495143.1| hypothetical protein CULC0102_1710 [Corynebacterium ulcerans 0102]
gi|334699504|gb|AEG84300.1| hypothetical protein CULC22_01590 [Corynebacterium ulcerans
BR-AD22]
gi|393403416|dbj|BAM27908.1| hypothetical protein CULC0102_1710 [Corynebacterium ulcerans 0102]
Length = 380
Score = 37.4 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 16 VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCG 74
VG TNNVA+Y +L+ GL A + G V DSKLV Q+ W ++ P M EL
Sbjct: 40 VGTATNNVAEYHALLNGLTAARELGATEVDVLMDSKLVVEQMSGRWKIKH--PDMKELAL 97
Query: 75 EAKRLKDKFLSI 86
+ + F SI
Sbjct: 98 TCRDIASGFASI 109
>gi|384516107|ref|YP_005711199.1| hypothetical protein CULC809_01573 [Corynebacterium ulcerans 809]
gi|334697308|gb|AEG82105.1| hypothetical protein CULC809_01573 [Corynebacterium ulcerans 809]
Length = 385
Score = 37.4 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 16 VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCG 74
VG TNNVA+Y +L+ GL A + G V DSKLV Q+ W ++ P M EL
Sbjct: 40 VGTATNNVAEYHALLNGLTAARELGATEVDVLMDSKLVVEQMSGRWKIKH--PDMKELAL 97
Query: 75 EAKRLKDKFLSI 86
+ + F SI
Sbjct: 98 TCRDIASGFASI 109
>gi|333990306|ref|YP_004522920.1| bifunctional RNase H/acid phosphatase [Mycobacterium sp. JDM601]
gi|333486274|gb|AEF35666.1| bifunctional RNase H/acid phosphatase [Mycobacterium sp. JDM601]
Length = 369
Score = 37.4 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 4 ADDGSLIYNHNG-VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WL 61
AD ++ G +G+ TNNVA+Y L+ GL A + G V DSKLV Q+ W
Sbjct: 27 ADRAEVLAETKGSIGVATNNVAEYRGLVAGLTEAARLGAAEVAVFMDSKLVVEQMAGRWK 86
Query: 62 MEDQTPGMAELCGEAKRLKDKF 83
++ P + L A+ L KF
Sbjct: 87 VKH--PDLIPLHTRARELAAKF 106
>gi|116309521|emb|CAH66586.1| OSIGBa0111E13.4 [Oryza sativa Indica Group]
Length = 523
Score = 37.4 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMED---QTPGMAELCGEA 76
TNN+A+Y L+ G++ A G V+GDS+LV QV +D P +++ E
Sbjct: 385 TNNIAEYEGLLAGIRAAATLGVKRLIVKGDSELVTNQV----HKDYKCSNPELSKYLAEV 440
Query: 77 KRLKDKF 83
++L+ +F
Sbjct: 441 RKLEKRF 447
>gi|38567657|emb|CAE75940.1| B1159F04.3 [Oryza sativa Japonica Group]
gi|38567815|emb|CAE05804.2| OSJNBb0046K02.14 [Oryza sativa Japonica Group]
Length = 891
Score = 37.4 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 25/39 (64%)
Query: 19 TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TTNN A+Y +++LGL+ A G + +R DSKLV V
Sbjct: 462 TTNNTAEYEAVLLGLRKAKALGVWRLLIRTDSKLVASHV 500
>gi|19697434|gb|AAL93069.1|AC093180_16 putative polyprotein [Oryza sativa Japonica Group]
gi|50897342|gb|AAT85793.1| RNase H domain containing protein [Oryza sativa Japonica Group]
gi|108709079|gb|ABF96874.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 397
Score = 37.4 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 25/39 (64%)
Query: 19 TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TTNN A+Y +++LGLK A G + +R DSKLV V
Sbjct: 217 TTNNAAEYEAILLGLKNAKALGVRHLLIRTDSKLVASHV 255
>gi|222622736|gb|EEE56868.1| hypothetical protein OsJ_06501 [Oryza sativa Japonica Group]
Length = 124
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 11/73 (15%)
Query: 19 TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV-----CCWLMEDQTPGMAELC 73
TNN A+Y L+ G++ A G V+GDS+LV QV C +P +++
Sbjct: 36 ATNNTAEYEGLLAGIRAAATLGVRRLIVKGDSELVANQVHKDYKCS------SPELSKYL 89
Query: 74 GEAKRLKDKFLSI 86
E ++L+ +F I
Sbjct: 90 AEVRKLEKRFDGI 102
>gi|147775045|emb|CAN59913.1| hypothetical protein VITISV_030726 [Vitis vinifera]
Length = 1957
Score = 37.0 bits (84), Expect = 1.3, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TNN+ +Y + ILGL+ AL+ G V GDS LV Q+
Sbjct: 1454 TNNIVEYEACILGLETALELGIRQMEVFGDSNLVLXQI 1491
>gi|32488767|emb|CAE04320.1| OSJNBb0016D16.11 [Oryza sativa Japonica Group]
Length = 1748
Score = 37.0 bits (84), Expect = 1.3, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E ++
Sbjct: 1427 SHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDN--MMAYRQEVRK 1484
Query: 79 LKDKF 83
+DKF
Sbjct: 1485 WEDKF 1489
>gi|282856848|ref|ZP_06266107.1| phosphoglycerate mutase [Pyramidobacter piscolens W5455]
gi|282585358|gb|EFB90667.1| phosphoglycerate mutase [Pyramidobacter piscolens W5455]
Length = 218
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 16 VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
+G+ TNN A+Y +L L + ++G N +RGDSKLV QV
Sbjct: 37 LGMKTNNEAEYMALSLLVDELERRGLKNAEIRGDSKLVISQV 78
>gi|33113963|gb|AAP94585.1| putative gag-pol precursor [Zea mays]
Length = 1833
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
+NN A+Y +LI GL A+ G V GDS +V Q+ W + + M + C ++
Sbjct: 1337 SNNAAEYEALIHGLNIAISLGVKRLMVYGDSLVVISQINKEW--DCSSDSMGKYCTAVRK 1394
Query: 79 LKDKF 83
L+DKF
Sbjct: 1395 LEDKF 1399
>gi|356523519|ref|XP_003530385.1| PREDICTED: uncharacterized protein LOC100799804 [Glycine max]
Length = 2073
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 17 GITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC 58
G+ +NN A+Y +LI GL+ + G N +RGDS+LV Q+
Sbjct: 1547 GLCSNNEAEYEALITGLEILISLGARNVNIRGDSELVLRQLT 1588
>gi|356507082|ref|XP_003522300.1| PREDICTED: uncharacterized protein LOC100801149 [Glycine max]
Length = 2075
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 17 GITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC 58
G+ +NN A+Y +LI GL+ + G N +RGDS+LV Q+
Sbjct: 1721 GLCSNNEAEYEALITGLQILISLGARNVNIRGDSELVLRQLT 1762
>gi|147859258|emb|CAN83961.1| hypothetical protein VITISV_011587 [Vitis vinifera]
Length = 2267
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TNN+ +Y + ILGL+ AL+ G V GDS LV Q+
Sbjct: 1780 TNNIVQYEACILGLETALELGIRQMEVFGDSNLVLRQI 1817
>gi|108864539|gb|ABA94416.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1714
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 7/70 (10%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMED---QTPGMAELCGEA 76
TNN A+Y L++G++ A G V+GDS+LV QV +D P +++ E
Sbjct: 1333 TNNTAEYEGLLVGIRAAAALGVKRLIVKGDSELVANQV----HKDYKCSNPELSKYLAEV 1388
Query: 77 KRLKDKFLSI 86
++L+ +F I
Sbjct: 1389 RKLEKRFDGI 1398
>gi|433648622|ref|YP_007293624.1| fructose-2,6-bisphosphatase [Mycobacterium smegmatis JS623]
gi|433298399|gb|AGB24219.1| fructose-2,6-bisphosphatase [Mycobacterium smegmatis JS623]
Length = 362
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 9 LIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTP 67
L + +G TNNVA+Y LI GL+ A + G V DSKLV Q+ W ++ P
Sbjct: 33 LAESKQAIGSATNNVAEYRGLIAGLEEAAKIGATEVDVSMDSKLVVEQMSGRWKVKH--P 90
Query: 68 GMAELCGEAKRLKDKFLSI 86
+A L +A L +F I
Sbjct: 91 DIAALHQQATALSARFEHI 109
>gi|29244664|gb|AAO73257.1| putative polyprotein [Oryza sativa Japonica Group]
gi|108709211|gb|ABF97006.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 388
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 19 TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQ-VCCWLMEDQTP 67
TTNN A+Y ++++GL+ A G F VR D KLV Q V W ++ P
Sbjct: 247 TTNNAAEYEAVLMGLRKAKALGVRRFLVRTDPKLVASQPVARWGLDINGP 296
>gi|50511406|gb|AAT77329.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1467
Score = 37.0 bits (84), Expect = 1.5, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 7/70 (10%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMED---QTPGMAELCGEA 76
TNN A+Y L+ G++ A G V+GDS+LV QV +D +P +++ E
Sbjct: 1208 TNNTAEYEGLLAGIRAATALGVKQLIVKGDSELVANQV----HKDYKCSSPELSKYLAEV 1263
Query: 77 KRLKDKFLSI 86
++L+ +F I
Sbjct: 1264 RKLEKRFDGI 1273
>gi|23396194|gb|AAN31788.1| Putative polyprotein [Oryza sativa Japonica Group]
gi|31431648|gb|AAP53392.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 2027
Score = 37.0 bits (84), Expect = 1.5, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 24/39 (61%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC 58
TNN+A+Y L+ GL+ A G V GDS+LV QVC
Sbjct: 1474 TNNMAEYKGLLAGLRVAAGLGIRRLLVLGDSQLVVNQVC 1512
>gi|51038246|gb|AAT94049.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1844
Score = 37.0 bits (84), Expect = 1.5, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ G + A+ G VRGDS+LV QV W D M E ++
Sbjct: 1408 SHNVAEYEALLHGPRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDN--MTAYRQEVRK 1465
Query: 79 LKDKF 83
L+DKF
Sbjct: 1466 LEDKF 1470
>gi|71907016|ref|YP_284603.1| ribonuclease H [Dechloromonas aromatica RCB]
gi|71846637|gb|AAZ46133.1| Ribonuclease H [Dechloromonas aromatica RCB]
Length = 216
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 1 MLRADDGSLIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC- 59
+L+ G I +G TNN A+Y +L+ L A+ + V GDS+LV QV
Sbjct: 27 LLKGPAGERIEISEDIGEGTNNEAEYAALMAVLDAAVAAKVQDLIVYGDSQLVIKQVNGE 86
Query: 60 WLMEDQTPGMAELCGEAKRL 79
WL+ + G+ +C +RL
Sbjct: 87 WLINAK--GLVPMCKTVRRL 104
>gi|147862688|emb|CAN79330.1| hypothetical protein VITISV_008718 [Vitis vinifera]
Length = 250
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 21 NNVAKYGSLILGLKYALQKGFFNFRVRGDSKLV--HMQ 56
NN+ +Y + ILGLK AL+ G V GDS LV H+Q
Sbjct: 2 NNIVEYEAYILGLKTALELGIIQIEVFGDSNLVLRHIQ 39
>gi|295321673|pdb|3HST|B Chain B, N-Terminal Rnase H Domain Of Rv2228c From Mycobacterium
Tuberculosis As A Fusion Protein With Maltose Binding
Protein
gi|295321675|pdb|3HST|D Chain D, N-Terminal Rnase H Domain Of Rv2228c From Mycobacterium
Tuberculosis As A Fusion Protein With Maltose Binding
Protein
Length = 141
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 9 LIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTP 67
L + +G TNNVA+Y LI GL A++ G V DSKLV Q+ W ++ P
Sbjct: 34 LAESKQAIGRATNNVAEYRGLIAGLDDAVKLGATEAAVLMDSKLVVEQMSGRWKVKH--P 91
Query: 68 GMAELCGEAKRLKDKFLSI 86
+ +L +A+ L +F I
Sbjct: 92 DLLKLYVQAQALASQFRRI 110
>gi|356561598|ref|XP_003549068.1| PREDICTED: uncharacterized protein LOC100789798 [Glycine max]
Length = 2277
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 17 GITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC 58
G+ +NN A+Y +LI GL+ + G N +RGDS+LV Q+
Sbjct: 1699 GLCSNNEAEYEALITGLEILISLGARNVNIRGDSELVLKQLT 1740
>gi|25028689|ref|NP_738743.1| bifunctional RNase H/acid phosphatase [Corynebacterium efficiens
YS-314]
gi|23493975|dbj|BAC18943.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
Length = 435
Score = 37.0 bits (84), Expect = 1.5, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 14/88 (15%)
Query: 4 ADDGSLIYNHNGVGI-----------TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKL 52
A G+++Y+ N I +TNNVA+Y LI GL+ A + G V DSKL
Sbjct: 62 AGSGTVVYSENRERILREIAYVVGTRSTNNVAEYRGLIEGLRVARELGATEVEVFMDSKL 121
Query: 53 VHMQVCC-WLMEDQTPGMAELCGEAKRL 79
V Q+ W ++ P M L EA+ L
Sbjct: 122 VVEQMSGRWKIKH--PDMKTLAMEARNL 147
>gi|356570109|ref|XP_003553233.1| PREDICTED: uncharacterized protein LOC100808063 [Glycine max]
Length = 1626
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 17 GITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC 58
G+ +NN A+Y +LI GL+ + G N +RGDS+LV Q+
Sbjct: 1111 GLCSNNEAEYEALITGLEILISLGARNVNIRGDSELVLRQLT 1152
>gi|259507750|ref|ZP_05750650.1| phosphoglycerate mutase family protein [Corynebacterium efficiens
YS-314]
gi|259164543|gb|EEW49097.1| phosphoglycerate mutase family protein [Corynebacterium efficiens
YS-314]
Length = 391
Score = 37.0 bits (84), Expect = 1.5, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 14/88 (15%)
Query: 4 ADDGSLIYNHNGVGI-----------TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKL 52
A G+++Y+ N I +TNNVA+Y LI GL+ A + G V DSKL
Sbjct: 18 AGSGTVVYSENRERILREIAYVVGTRSTNNVAEYRGLIEGLRVARELGATEVEVFMDSKL 77
Query: 53 VHMQVCC-WLMEDQTPGMAELCGEAKRL 79
V Q+ W ++ P M L EA+ L
Sbjct: 78 VVEQMSGRWKIKH--PDMKTLAMEARNL 103
>gi|94967119|ref|YP_589167.1| ribonuclease H [Candidatus Koribacter versatilis Ellin345]
gi|94549169|gb|ABF39093.1| ribonuclease H [Candidatus Koribacter versatilis Ellin345]
Length = 211
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 16 VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
+G TNNVA+Y L+ L YA + GF +V DS+L+ Q+
Sbjct: 53 LGHQTNNVAEYSGLLAALDYAQKHGFKALKVVADSELLVKQI 94
>gi|77552906|gb|ABA95702.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1619
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1033 DGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRCLLV 1092
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1093 LGDSQLVVNQVC 1104
>gi|31432134|gb|AAP53804.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1765
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1179 DGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRCLLV 1238
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1239 LGDSQLVVNQVC 1250
>gi|77556224|gb|ABA99020.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 960
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 7/70 (10%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMED---QTPGMAELCGEA 76
TNN A+Y L+ G++ A G V+GDS+LV QV +D +P +++ E
Sbjct: 532 TNNTAEYEGLLAGIRAAATLGVRRLIVKGDSELVANQV----HKDYKCSSPELSKYLAEV 587
Query: 77 KRLKDKFLSI 86
++L+ +F I
Sbjct: 588 RKLEKRFDGI 597
>gi|356554623|ref|XP_003545644.1| PREDICTED: uncharacterized protein LOC100789762 [Glycine max]
Length = 2243
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 17 GITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC 58
G+ +NN A+Y +LI GL+ + G N +RGDS+LV Q+
Sbjct: 1716 GLCSNNEAEYEALITGLEILISLGARNVNIRGDSELVLRQLT 1757
>gi|356503115|ref|XP_003520357.1| PREDICTED: uncharacterized protein LOC100809115 [Glycine max]
Length = 2203
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 17 GITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC 58
G+ +NN A+Y +LI GL+ + G N +RGDS+LV Q+
Sbjct: 1731 GLCSNNEAEYEALITGLEILISLGARNVNIRGDSELVLRQLT 1772
>gi|50838904|gb|AAT81665.1| putative retrotransposon protein [Oryza sativa Japonica Group]
gi|108709836|gb|ABF97631.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 2784
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 7/70 (10%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMED---QTPGMAELCGEA 76
TNN A+Y L+ G++ A G V+GDS+LV QV +D +P +++ E
Sbjct: 779 TNNTAEYEGLLAGIRAAAALGVKQLIVKGDSELVANQV----HKDYKCSSPELSKYLAEV 834
Query: 77 KRLKDKFLSI 86
++L+ +F I
Sbjct: 835 RKLEKRFDGI 844
>gi|168699254|ref|ZP_02731531.1| ribonuclease H [Gemmata obscuriglobus UQM 2246]
Length = 212
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 8 SLIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC-CWLMEDQT 66
++ + +G +NNVA+Y +L+ GL A + G +V DS+L+ Q+ + ++++
Sbjct: 32 PVVEEADTIGTASNNVAEYTALVEGLGLAAELGVKQLQVFSDSELMVKQMAGAYKVKNED 91
Query: 67 PGMAELCGEAKRLKDKFLSI 86
+ L EA RL+ +F S+
Sbjct: 92 --LRTLYEEACRLRKQFESV 109
>gi|356570574|ref|XP_003553460.1| PREDICTED: uncharacterized protein LOC100782050 [Glycine max]
Length = 2129
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 17 GITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC 58
G+ +NN A+Y +LI GL+ + G N +RGDS+LV Q+
Sbjct: 1731 GLCSNNEAEYEALITGLEILISLGARNVNIRGDSELVLRQLT 1772
>gi|356553674|ref|XP_003545178.1| PREDICTED: uncharacterized protein LOC100783555 [Glycine max]
Length = 2312
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 17 GITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC 58
G+ +NN A+Y +LI GL+ + G N +RGDS+LV Q+
Sbjct: 1734 GLCSNNEAEYEALITGLEILISLGARNVNIRGDSELVVKQLT 1775
>gi|356537315|ref|XP_003537174.1| PREDICTED: uncharacterized protein LOC100793719 [Glycine max]
Length = 2128
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 17 GITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC 58
G+ +NN A+Y +LI GL+ + G N +RGDS+LV Q+
Sbjct: 1731 GLCSNNEAEYEALITGLEILISLGARNVNIRGDSELVLRQLT 1772
>gi|356532475|ref|XP_003534798.1| PREDICTED: uncharacterized protein LOC100806767 [Glycine max]
Length = 2160
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 17 GITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC 58
G+ +NN A+Y +LI GL+ + G N +RGDS+LV Q+
Sbjct: 1731 GLCSNNEAEYEALITGLEILISLGARNVNIRGDSELVLRQLT 1772
>gi|356503081|ref|XP_003520340.1| PREDICTED: uncharacterized protein LOC100788952 [Glycine max]
Length = 2160
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 17 GITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC 58
G+ +NN A+Y +LI GL+ + G N +RGDS+LV Q+
Sbjct: 1731 GLCSNNEAEYEALITGLEILISLGARNVNIRGDSELVLRQLT 1772
>gi|108864375|gb|ABA93606.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1939
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 31/72 (43%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL A G V
Sbjct: 1353 DGSLSLQGAGAGVTLTSPSGDILRYLVRLDFRATNNMAEYEGLLAGLSVAAGLGIRRLLV 1412
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1413 LGDSQLVVNQVC 1424
>gi|359490420|ref|XP_003634084.1| PREDICTED: uncharacterized protein LOC100853663 [Vitis vinifera]
Length = 2086
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TNN+ +Y + ILGL+ AL+ G V GDS LV Q+
Sbjct: 1543 TNNIVEYEACILGLETALELGIRQMEVFGDSNLVLRQI 1580
>gi|359484844|ref|XP_003633174.1| PREDICTED: uncharacterized protein LOC100855346 [Vitis vinifera]
Length = 1966
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TNN+ +Y + ILGL+ AL+ G V GDS LV Q+
Sbjct: 1391 TNNIVEYEACILGLETALELGIRQMEVFGDSNLVLRQI 1428
>gi|359474418|ref|XP_003631459.1| PREDICTED: uncharacterized protein LOC100853395 [Vitis vinifera]
Length = 2434
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TNN+ +Y + ILGL+ AL+ G V GDS LV Q+
Sbjct: 1829 TNNIVEYEACILGLETALELGIRQMEVFGDSNLVLRQI 1866
>gi|359472600|ref|XP_003631172.1| PREDICTED: uncharacterized protein LOC100852915 [Vitis vinifera]
Length = 2212
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TNN+ +Y + ILGL+ AL+ G V GDS LV Q+
Sbjct: 1661 TNNIVEYEACILGLETALELGIRQMEVFGDSNLVLRQI 1698
>gi|356574214|ref|XP_003555246.1| PREDICTED: uncharacterized protein LOC100788106 [Glycine max]
Length = 2203
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 17 GITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC 58
G+ +NN A+Y +LI GL+ + G N +RGDS+LV Q+
Sbjct: 1731 GLCSNNEAEYEALITGLEILISLGARNVNIRGDSELVLRQLT 1772
>gi|356573839|ref|XP_003555063.1| PREDICTED: uncharacterized protein LOC100787746 [Glycine max]
Length = 2219
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 17 GITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC 58
G+ +NN A+Y +LI GL+ + G N +RGDS+LV Q+
Sbjct: 1684 GLCSNNEAEYEALITGLEILISLGARNVNIRGDSELVVKQLT 1725
>gi|356562251|ref|XP_003549385.1| PREDICTED: uncharacterized protein LOC100784663 [Glycine max]
Length = 2160
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 17 GITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC 58
G+ +NN A+Y +LI GL+ + G N +RGDS+LV Q+
Sbjct: 1731 GLCSNNEAEYEALITGLEILISLGARNVNIRGDSELVLRQLT 1772
>gi|258450517|gb|ACV72188.1| ribonuclease H [uncultured organism]
Length = 156
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 32/54 (59%)
Query: 4 ADDGSLIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
ADD L VGITTNN A+Y ++ L L+ AL+ G ++R DS LV Q+
Sbjct: 49 ADDRVLFKGGEYVGITTNNQAEYQAVKLALEKALELGAKKVKLRLDSLLVVNQL 102
>gi|133751139|gb|ABO37965.1| putative pol protein [Vitis vinifera]
Length = 276
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TNN+ +Y + ILGL+ AL+ G V GDS LV Q+
Sbjct: 16 TNNIVEYEACILGLETALELGIRQMEVFGDSNLVLRQI 53
>gi|147865890|emb|CAN78842.1| hypothetical protein VITISV_015163 [Vitis vinifera]
Length = 2177
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TNN+ +Y + ILGL+ AL+ G V GDS LV Q+
Sbjct: 1655 TNNIVEYEACILGLETALELGIRQMEVFGDSNLVLRQI 1692
>gi|147856817|emb|CAN81341.1| hypothetical protein VITISV_003207 [Vitis vinifera]
Length = 2072
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TNN+ +Y + ILGL+ AL+ G V GDS LV Q+
Sbjct: 1611 TNNIVEYEACILGLETALELGIRQMEVFGDSNLVLRQI 1648
>gi|147855720|emb|CAN81323.1| hypothetical protein VITISV_019409 [Vitis vinifera]
Length = 2174
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TNN+ +Y + ILGL+ AL+ G V GDS LV Q+
Sbjct: 1648 TNNIVEYEACILGLETALELGIRQMEVFGDSNLVLRQI 1685
>gi|147852267|emb|CAN80129.1| hypothetical protein VITISV_018340 [Vitis vinifera]
Length = 2285
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TNN+ +Y + ILGL+ AL+ G V GDS LV Q+
Sbjct: 1770 TNNIVEYEACILGLETALELGIRQMEVFGDSNLVLRQI 1807
>gi|147845704|emb|CAN79906.1| hypothetical protein VITISV_034933 [Vitis vinifera]
Length = 1882
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TNN+ +Y + ILGL+ AL+ G V GDS LV Q+
Sbjct: 1732 TNNIVEYEACILGLETALELGIRQMEVFGDSNLVLRQI 1769
>gi|147843786|emb|CAN79456.1| hypothetical protein VITISV_004376 [Vitis vinifera]
Length = 2080
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TNN+ +Y + ILGL+ AL+ G V GDS LV Q+
Sbjct: 1581 TNNIVEYEACILGLETALELGIRQMEVFGDSNLVLRQI 1618
>gi|147836100|emb|CAN62090.1| hypothetical protein VITISV_013805 [Vitis vinifera]
Length = 2463
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TNN+ +Y + ILGL+ AL+ G V GDS LV Q+
Sbjct: 1417 TNNIVEYEACILGLETALELGIRQMEVFGDSNLVLRQI 1454
>gi|147828215|emb|CAN77782.1| hypothetical protein VITISV_018671 [Vitis vinifera]
Length = 1996
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TNN+ +Y + ILGL+ AL+ G V GDS LV Q+
Sbjct: 1522 TNNIVEYEACILGLETALELGIRQMEVFGDSNLVLRQI 1559
>gi|147834845|emb|CAN68307.1| hypothetical protein VITISV_034582 [Vitis vinifera]
Length = 1881
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TNN+ +Y + ILGL+ AL+ G V GDS LV Q+
Sbjct: 1344 TNNIVEYEACILGLETALELGIRQMEVFGDSNLVLRQI 1381
>gi|147834589|emb|CAN67489.1| hypothetical protein VITISV_032813 [Vitis vinifera]
Length = 1226
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TNN+ +Y + ILGL+ AL+ G V GDS LV Q+
Sbjct: 741 TNNIVEYEACILGLETALELGIRQMEVFGDSNLVLRQI 778
>gi|147819107|emb|CAN75602.1| hypothetical protein VITISV_018938 [Vitis vinifera]
Length = 1588
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TNN+ +Y + ILGL+ AL+ G V GDS LV Q+
Sbjct: 1051 TNNIVEYEACILGLETALELGIRQMEVFGDSNLVLRQI 1088
>gi|147820376|emb|CAN61248.1| hypothetical protein VITISV_001957 [Vitis vinifera]
Length = 676
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TNN+ +Y + ILGL+ AL+ G V GDS LV Q+
Sbjct: 636 TNNIVEYEACILGLETALELGIRQMEVFGDSNLVLRQI 673
>gi|147820124|emb|CAN60550.1| hypothetical protein VITISV_040254 [Vitis vinifera]
Length = 1494
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TNN+ +Y + ILGL+ AL+ G V GDS LV Q+
Sbjct: 980 TNNIVEYEACILGLETALELGIRQMEVFGDSNLVLRQI 1017
>gi|147815071|emb|CAN74570.1| hypothetical protein VITISV_034081 [Vitis vinifera]
Length = 1998
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TNN+ +Y + ILGL+ AL+ G V GDS LV Q+
Sbjct: 1475 TNNIVEYEACILGLETALELGIRQMEVFGDSNLVLRQI 1512
>gi|147803555|emb|CAN68715.1| hypothetical protein VITISV_004899 [Vitis vinifera]
Length = 2452
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TNN+ +Y + ILGL+ AL+ G V GDS LV Q+
Sbjct: 1034 TNNIVEYEACILGLETALELGIRQMEVFGDSNLVLRQI 1071
>gi|147791735|emb|CAN68353.1| hypothetical protein VITISV_022217 [Vitis vinifera]
Length = 2168
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TNN+ +Y + ILGL+ AL+ G V GDS LV Q+
Sbjct: 1631 TNNIVEYEACILGLETALELGIRQMEVFGDSNLVLRQI 1668
>gi|147793981|emb|CAN77844.1| hypothetical protein VITISV_028932 [Vitis vinifera]
Length = 1928
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TNN+ +Y + ILGL+ AL+ G V GDS LV Q+
Sbjct: 1538 TNNIVEYEACILGLETALELGIRQMEVFGDSNLVLRQI 1575
>gi|147791936|emb|CAN72441.1| hypothetical protein VITISV_032854 [Vitis vinifera]
Length = 2089
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TNN+ +Y + ILGL+ AL+ G V GDS LV Q+
Sbjct: 1628 TNNIVEYEACILGLETALELGIRQMEVFGDSNLVLRQI 1665
>gi|147790268|emb|CAN74495.1| hypothetical protein VITISV_026191 [Vitis vinifera]
Length = 2172
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TNN+ +Y + ILGL+ AL+ G V GDS LV Q+
Sbjct: 1662 TNNIVEYEACILGLETALELGIRQMEVFGDSNLVLRQI 1699
>gi|147780088|emb|CAN66592.1| hypothetical protein VITISV_028804 [Vitis vinifera]
Length = 1896
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TNN+ +Y + ILGL+ AL+ G V GDS LV Q+
Sbjct: 1520 TNNIVEYEACILGLETALELGIRQMEVFGDSNLVLRQI 1557
>gi|147781100|emb|CAN62911.1| hypothetical protein VITISV_036452 [Vitis vinifera]
Length = 2129
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TNN+ +Y + ILGL+ AL+ G V GDS LV Q+
Sbjct: 1609 TNNIVEYEACILGLETALELGIRQMEVFGDSNLVLRQI 1646
>gi|147775396|emb|CAN67021.1| hypothetical protein VITISV_007533 [Vitis vinifera]
Length = 783
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TNN+ +Y + ILGL+ AL+ G V GDS LV Q+
Sbjct: 282 TNNIVEYEACILGLETALELGIRQMEVFGDSNLVLRQI 319
>gi|147779083|emb|CAN71393.1| hypothetical protein VITISV_005159 [Vitis vinifera]
Length = 2155
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TNN+ +Y + ILGL+ AL+ G V GDS LV Q+
Sbjct: 1651 TNNIVEYEACILGLETALELGIRQMEVFGDSNLVLRQI 1688
>gi|147781249|emb|CAN74038.1| hypothetical protein VITISV_028523 [Vitis vinifera]
Length = 2317
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TNN+ +Y + ILGL+ AL+ G V GDS LV Q+
Sbjct: 1780 TNNIVEYEACILGLETALELGIRQMEVFGDSNLVLRQI 1817
>gi|147768439|emb|CAN73637.1| hypothetical protein VITISV_020488 [Vitis vinifera]
Length = 2301
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TNN+ +Y + ILGL+ AL+ G V GDS LV Q+
Sbjct: 1764 TNNIVEYEACILGLETALELGIRQMEVFGDSNLVLRQI 1801
>gi|147767462|emb|CAN71254.1| hypothetical protein VITISV_006362 [Vitis vinifera]
Length = 2154
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TNN+ +Y + ILGL+ AL+ G V GDS LV Q+
Sbjct: 1666 TNNIVEYEACILGLETALELGIRQMEVFGDSNLVLRQI 1703
>gi|147766168|emb|CAN61396.1| hypothetical protein VITISV_027489 [Vitis vinifera]
Length = 639
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TNN+ +Y + ILGL+ AL+ G V GDS LV Q+
Sbjct: 128 TNNIVEYEACILGLETALELGIRQMEVFGDSNLVLRQI 165
>gi|359485628|ref|XP_003633300.1| PREDICTED: uncharacterized protein LOC100854777 [Vitis vinifera]
Length = 2323
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TNN+ +Y + ILGL+ AL+ G V GDS LV Q+
Sbjct: 1765 TNNIVEYEACILGLETALELGIRQMEVFGDSSLVLRQI 1802
>gi|356561618|ref|XP_003549078.1| PREDICTED: uncharacterized protein LOC100797724 [Glycine max]
Length = 2163
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 17 GITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC 58
G+ +NN A+Y +LI GL+ + G N +RGDS+LV Q+
Sbjct: 1734 GLCSNNEAEYEALITGLEILISLGARNVNIRGDSELVLKQLT 1775
>gi|356551735|ref|XP_003544229.1| PREDICTED: uncharacterized protein LOC100817039 [Glycine max]
Length = 2179
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 17 GITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC 58
G+ +NN A+Y +LI GL+ + G N +RGDS+LV Q+
Sbjct: 1707 GLCSNNEAEYEALITGLEILISLGARNVNIRGDSELVLRQLT 1748
>gi|356533003|ref|XP_003535058.1| PREDICTED: uncharacterized protein LOC100797932 [Glycine max]
Length = 2105
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 17 GITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC 58
G+ +NN A+Y +LI GL+ + G N +RGDS+LV Q+
Sbjct: 1745 GLCSNNEAEYEALITGLEILISLGARNVNIRGDSELVLKQLT 1786
>gi|356507113|ref|XP_003522315.1| PREDICTED: uncharacterized protein LOC100818573 [Glycine max]
Length = 2203
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 17 GITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC 58
G+ +NN A+Y +LI GL+ + G N +RGDS+LV Q+
Sbjct: 1731 GLCSNNEAEYEALITGLEILISLGARNVNIRGDSELVLKQLT 1772
>gi|108710260|gb|ABF98055.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1890
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMEDQT--PGMAELCGEAK 77
TNN+A+Y L+ GL+ A G V GDS+LV QVC E Q P M + +
Sbjct: 1337 TNNMAEYEGLLAGLRVAAGLGIRRLLVLGDSQLVVNQVC---KEYQCSDPQMDAYVRQVR 1393
Query: 78 RLKDKFLSI 86
R++ F I
Sbjct: 1394 RMERHFDGI 1402
>gi|40714700|gb|AAR88606.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1871
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMEDQT--PGMAELCGEAK 77
TNN+A+Y L+ GL+ A G V GDS+LV QVC E Q P M + +
Sbjct: 1318 TNNMAEYEGLLAGLRVAAGLGIRRLLVLGDSQLVVNQVC---KEYQCSDPQMDAYVRQVR 1374
Query: 78 RLKDKFLSI 86
R++ F I
Sbjct: 1375 RMERHFDGI 1383
>gi|356570048|ref|XP_003553204.1| PREDICTED: uncharacterized protein LOC100801132 [Glycine max]
Length = 1986
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 17 GITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC 58
G+ +NN A+Y +LI GL+ + G N +RGDS+LV Q+
Sbjct: 1408 GLCSNNEAEYEALITGLEILISLGARNVNIRGDSELVLRQLT 1449
>gi|356506259|ref|XP_003521904.1| PREDICTED: uncharacterized protein LOC100796526 [Glycine max]
Length = 2119
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 17 GITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC 58
G+ +NN A+Y +LI GL+ + G N +RGDS+LV Q+
Sbjct: 1690 GLCSNNEAEYEALITGLEILISLGARNVNIRGDSELVVKQLT 1731
>gi|356494941|ref|XP_003516339.1| PREDICTED: uncharacterized protein LOC100810819 [Glycine max]
Length = 2238
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 17 GITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC 58
G+ +NN A+Y +LI GL+ + G N +RGDS+LV Q+
Sbjct: 1731 GLCSNNKAEYEALITGLEILISLGARNVNIRGDSELVLKQLT 1772
>gi|359497075|ref|XP_003635417.1| PREDICTED: protein NYNRIN-like, partial [Vitis vinifera]
Length = 1279
Score = 37.0 bits (84), Expect = 1.7, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TNN+ +Y + ILGL+ AL+ V GDS LV MQ+
Sbjct: 742 TNNIVEYEACILGLETALELDIRQMEVFGDSNLVLMQI 779
>gi|356529936|ref|XP_003533542.1| PREDICTED: uncharacterized protein LOC100788921 [Glycine max]
Length = 2189
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 17 GITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC 58
G+ +NN A+Y +LI GL+ + G N +RGDS+LV Q+
Sbjct: 1716 GLCSNNEAEYEALITGLEILISLGARNVNIRGDSELVLRQLT 1757
>gi|356514268|ref|XP_003525828.1| PREDICTED: uncharacterized protein LOC100776741 [Glycine max]
Length = 2128
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 17 GITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC 58
G+ +NN A+Y +LI GL+ + G N +RGDS+LV Q+
Sbjct: 1731 GLCSNNEAEYEALITGLEILISLGARNVNIRGDSELVLRQLT 1772
>gi|38343984|emb|CAD40450.2| OSJNBa0041M21.8 [Oryza sativa Japonica Group]
gi|38343992|emb|CAD40357.2| OSJNBa0093P23.3 [Oryza sativa Japonica Group]
gi|116309168|emb|CAH66266.1| OSIGBa0136B09.2 [Oryza sativa Indica Group]
Length = 598
Score = 37.0 bits (84), Expect = 1.7, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 9/59 (15%)
Query: 4 ADDGSLIYNHNGVGI---------TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLV 53
A +++++ NGV I TTNN A+Y +++LGL+ A G +R DSKLV
Sbjct: 120 ASVAAVLFSPNGVPIRYTARLQFNTTNNAAEYEAVLLGLRKAKALGVRRLLIRTDSKLV 178
>gi|408532304|emb|CCK30478.1| hypothetical protein BN159_6099 [Streptomyces davawensis JCM 4913]
Length = 396
Score = 37.0 bits (84), Expect = 1.7, Method: Composition-based stats.
Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 16 VGITTNNVAKYGSLILGLKYALQ-KGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELC 73
+G+ TNNVA+Y L+ GL+ AL + VR DSKLV Q+ W ++ P M L
Sbjct: 41 LGVVTNNVAEYRGLLAGLRAALDLDPTASVHVRMDSKLVVEQMSGRWKIKH--PDMKPLA 98
Query: 74 GEAKRL 79
EA R+
Sbjct: 99 MEASRV 104
>gi|356551699|ref|XP_003544211.1| PREDICTED: uncharacterized protein LOC100802634 [Glycine max]
Length = 2201
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 17 GITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC 58
G+ +NN A+Y +LI GL+ + G N +RGDS+LV Q+
Sbjct: 1699 GLCSNNEAEYEALITGLEILISLGARNVNIRGDSELVLKQLT 1740
>gi|108862571|gb|ABA97641.2| transposon protein, putative, unclassified [Oryza sativa Japonica
Group]
Length = 409
Score = 37.0 bits (84), Expect = 1.7, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 7/70 (10%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMED---QTPGMAELCGEA 76
TNN A+Y L+ G++ A+ G ++GDS+LV QV +D P +++ E
Sbjct: 37 TNNTAEYKGLLAGIRAAVALGVKRLIIKGDSELVANQV----HKDYKCSNPELSKYLAEV 92
Query: 77 KRLKDKFLSI 86
++L+ +F I
Sbjct: 93 RKLEKRFDGI 102
>gi|449482774|ref|XP_004156399.1| PREDICTED: uncharacterized protein LOC101232754 [Cucumis sativus]
Length = 796
Score = 37.0 bits (84), Expect = 1.7, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 7/72 (9%)
Query: 18 ITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWL---MEDQTPGMAELCG 74
+ +NNV +Y +LI+ L+ AL+ G V GDSKL+ Q+ ED P A
Sbjct: 259 LCSNNVVEYQALIISLQIALEIGVSFIEVYGDSKLIINQLSLQYDVKHEDLKPYFA---- 314
Query: 75 EAKRLKDKFLSI 86
A++L +KF S+
Sbjct: 315 YARQLMEKFDSV 326
>gi|147796488|emb|CAN74805.1| hypothetical protein VITISV_007812 [Vitis vinifera]
Length = 1143
Score = 37.0 bits (84), Expect = 1.7, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 24/39 (61%)
Query: 19 TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TTNN+ +Y + I+ JK AL+ G + GDS LV QV
Sbjct: 832 TTNNIVEYKACIISJKTALELGITQMDILGDSNLVLKQV 870
>gi|108709164|gb|ABF96959.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 606
Score = 37.0 bits (84), Expect = 1.7, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 9/56 (16%)
Query: 7 GSLIYNHNGVGI---------TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLV 53
+++++ NGV I TTNN A+Y +++LGL+ A G +R DSKLV
Sbjct: 130 AAVLFSPNGVPIRYAARLQFDTTNNAAEYEAILLGLRNAKALGVRRLLIRTDSKLV 185
>gi|41393217|gb|AAS01940.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 680
Score = 37.0 bits (84), Expect = 1.7, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 9/56 (16%)
Query: 7 GSLIYNHNGVGI---------TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLV 53
+++++ NGV I TTNN A+Y +++LGL+ A G +R DSKLV
Sbjct: 204 AAVLFSPNGVPIRYAARLQFDTTNNAAEYEAILLGLRNAKALGVRRLLIRTDSKLV 259
>gi|147834829|emb|CAN72700.1| hypothetical protein VITISV_012981 [Vitis vinifera]
Length = 1438
Score = 36.6 bits (83), Expect = 1.7, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TNN+ +Y + ILGL+ AL+ G V GDS LV Q+
Sbjct: 1013 TNNIVEYEACILGLETALELGIRQTEVFGDSNLVSRQI 1050
>gi|356566644|ref|XP_003551540.1| PREDICTED: uncharacterized protein LOC100776668 [Glycine max]
Length = 2008
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 17 GITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC 58
G+ +NN A+Y +LI GL+ + G N +RGDS+LV Q+
Sbjct: 1430 GLCSNNEAEYEALITGLEILISLGARNVNIRGDSELVVKQLT 1471
>gi|356566612|ref|XP_003551524.1| PREDICTED: uncharacterized protein LOC100805548 [Glycine max]
Length = 2323
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
TNNVA+Y + ILG++ A+ N + GDS LV Q+ W E + PG+ A+R
Sbjct: 1787 TNNVAEYEACILGIEKAIDLKIKNLDIYGDSALVINQIKGEW--ETRHPGLIPYKDYARR 1844
Query: 79 L 79
L
Sbjct: 1845 L 1845
>gi|320354804|ref|YP_004196143.1| ribonuclease H [Desulfobulbus propionicus DSM 2032]
gi|320123306|gb|ADW18852.1| ribonuclease H [Desulfobulbus propionicus DSM 2032]
Length = 202
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 29/42 (69%)
Query: 16 VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
+G+ TNNVA+Y +L++GL AL+ G + V DS+L+ Q+
Sbjct: 107 LGVCTNNVAEYKALLIGLDEALRHGCTDVAVFLDSELIVRQI 148
>gi|46359902|gb|AAS88834.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1937
Score = 36.6 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 24/39 (61%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC 58
TNN+A+Y L+ GL+ A G V GDS+LV QVC
Sbjct: 1384 TNNMAEYEGLLAGLRVAAGLGIRRLLVLGDSQLVVNQVC 1422
>gi|27552545|gb|AAO19368.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 777
Score = 36.6 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 18/35 (51%), Positives = 23/35 (65%)
Query: 19 TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLV 53
TTNN A+Y ++ILGL+ A G +R DSKLV
Sbjct: 482 TTNNAAEYEAIILGLRKAKALGIRRLLIRTDSKLV 516
>gi|78707851|gb|ABB46826.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 602
Score = 36.6 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 18/35 (51%), Positives = 23/35 (65%)
Query: 19 TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLV 53
TTNN A+Y +++LGLK A G +R DSKLV
Sbjct: 215 TTNNAAEYDAILLGLKKAKALGVRRLLIRTDSKLV 249
>gi|77557009|gb|ABA99805.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1831
Score = 36.6 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 24/39 (61%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC 58
TNN+A+Y L+ GL+ A G V GDS+LV QVC
Sbjct: 1278 TNNMAEYEGLLAGLRVAAGLGIRRLLVLGDSQLVVNQVC 1316
>gi|77556987|gb|ABA99783.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1908
Score = 36.6 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 24/39 (61%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC 58
TNN+A+Y L+ GL+ A G V GDS+LV QVC
Sbjct: 1355 TNNMAEYEGLLAGLRVAAGLGIRRLLVLGDSQLVVNQVC 1393
>gi|77554037|gb|ABA96833.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1987
Score = 36.6 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 24/39 (61%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC 58
TNN+A+Y L+ GL+ A G V GDS+LV QVC
Sbjct: 1474 TNNMAEYEGLLAGLRVAAGLGIRRLLVLGDSQLVVNQVC 1512
>gi|77556745|gb|ABA99541.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1904
Score = 36.6 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 24/39 (61%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC 58
TNN+A+Y L+ GL+ A G V GDS+LV QVC
Sbjct: 1351 TNNMAEYEGLLAGLRVAAGLGIRRLLVLGDSQLVVNQVC 1389
>gi|32488418|emb|CAE02761.1| OSJNBb0085F13.8 [Oryza sativa Japonica Group]
gi|38346879|emb|CAE04615.2| OSJNBb0004G23.13 [Oryza sativa Japonica Group]
Length = 1932
Score = 36.6 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 24/39 (61%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC 58
TNN+A+Y L+ GL+ A G V GDS+LV QVC
Sbjct: 1419 TNNMAEYEGLLAGLRVAAGLGIRRLLVLGDSQLVVNQVC 1457
>gi|116310028|emb|CAH67052.1| OSIGBa0127A14.4 [Oryza sativa Indica Group]
Length = 1983
Score = 36.6 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 24/39 (61%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC 58
TNN+A+Y L+ GL+ A G V GDS+LV QVC
Sbjct: 1474 TNNMAEYEGLLAGLRVAAGLGIRRLLVLGDSQLVVNQVC 1512
>gi|110289146|gb|AAP53982.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1954
Score = 36.6 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 24/39 (61%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC 58
TNN+A+Y L+ GL+ A G V GDS+LV QVC
Sbjct: 1401 TNNMAEYEGLLAGLRVAAGLGIRRLLVLGDSQLVVNQVC 1439
>gi|108710080|gb|ABF97875.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1881
Score = 36.6 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 24/39 (61%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC 58
TNN+A+Y L+ GL+ A G V GDS+LV QVC
Sbjct: 1328 TNNMAEYEGLLAGLRVAAGLGIRRLLVLGDSQLVVNQVC 1366
>gi|108710569|gb|ABF98364.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 790
Score = 36.6 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 18/35 (51%), Positives = 23/35 (65%)
Query: 19 TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLV 53
TTNN A+Y ++ILGL+ A G +R DSKLV
Sbjct: 482 TTNNAAEYEAIILGLRKAKALGIRRLLIRTDSKLV 516
>gi|52353657|gb|AAU44223.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1823
Score = 36.6 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 24/39 (61%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC 58
TNN+A+Y L+ GL+ A G V GDS+LV QVC
Sbjct: 1270 TNNMAEYEGLLAGLRVAAGLGIRRLLVLGDSQLVVNQVC 1308
>gi|32489755|emb|CAE03879.1| OSJNBb0015N08.7 [Oryza sativa Japonica Group]
Length = 1975
Score = 36.6 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 24/39 (61%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC 58
TNN+A+Y L+ GL+ A G V GDS+LV QVC
Sbjct: 1422 TNNMAEYEGLLAGLRVAAGLGIRRLLVLGDSQLVVNQVC 1460
>gi|14192872|gb|AAK55777.1|AC079038_11 Putative polyprotein [Oryza sativa]
Length = 1992
Score = 36.6 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 24/39 (61%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC 58
TNN+A+Y L+ GL+ A G V GDS+LV QVC
Sbjct: 1439 TNNMAEYEGLLAGLRVAAGLGIRRLLVLGDSQLVVNQVC 1477
>gi|14192869|gb|AAK55774.1|AC079038_8 Putative polyprotein [Oryza sativa]
Length = 2027
Score = 36.6 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 24/39 (61%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC 58
TNN+A+Y L+ GL+ A G V GDS+LV QVC
Sbjct: 1474 TNNMAEYEGLLAGLRVAAGLGIRRLLVLGDSQLVVNQVC 1512
>gi|15217253|gb|AAK92597.1|AC078944_8 Putative retroelement [Oryza sativa Japonica Group]
Length = 698
Score = 36.6 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 18/35 (51%), Positives = 23/35 (65%)
Query: 19 TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLV 53
TTNN A+Y +++LGLK A G +R DSKLV
Sbjct: 272 TTNNAAEYDAILLGLKKAKALGVRRLLIRTDSKLV 306
>gi|356557646|ref|XP_003547126.1| PREDICTED: uncharacterized protein LOC100799454 [Glycine max]
Length = 1921
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 17 GITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC 58
G+ +NN A+Y +LI GL+ + G N +RGDS+LV Q+
Sbjct: 1449 GLCSNNEAEYEALITGLEILISLGARNVNIRGDSELVVKQLT 1490
>gi|147853452|emb|CAN82295.1| hypothetical protein VITISV_010377 [Vitis vinifera]
Length = 1571
Score = 36.6 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TNN+ +Y + ILGL+ AL+ G V GDS LV Q+
Sbjct: 1166 TNNIVEYEACILGLETALELGIKQMEVFGDSNLVLRQI 1203
>gi|62733358|gb|AAX95475.1| Integrase core domain, putative [Oryza sativa Japonica Group]
gi|62733703|gb|AAX95813.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
gi|77550263|gb|ABA93060.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1367
Score = 36.6 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 7/70 (10%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMED---QTPGMAELCGEA 76
TNN A+Y L+ G++ A G V+GDS+LV QV +D +P +++ E
Sbjct: 1004 TNNTAEYEGLLAGIRAAAALGVKRLIVKGDSELVANQV----HKDYKCSSPELSKYLAEV 1059
Query: 77 KRLKDKFLSI 86
++L+ +F I
Sbjct: 1060 RKLEKRFDGI 1069
>gi|147860177|emb|CAN82919.1| hypothetical protein VITISV_008801 [Vitis vinifera]
Length = 2318
Score = 36.6 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TNN+ +Y + ILGL+ AL+ G V GDS LV Q+
Sbjct: 1781 TNNIVEYEACILGLETALELGIGQMEVFGDSNLVLRQI 1818
>gi|296270282|ref|YP_003652914.1| phosphoglycerate mutase [Thermobispora bispora DSM 43833]
gi|296093069|gb|ADG89021.1| Phosphoglycerate mutase [Thermobispora bispora DSM 43833]
Length = 440
Score = 36.6 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 15 GVGITTNNVAKYGSLILGLKYALQKGFFN--FRVRGDSKLVHMQVCC-WLMEDQ--TPGM 69
+G+ TNNVA+Y LI GL+ L G VR DS+LV Q+ W ++ + P
Sbjct: 44 AIGVATNNVAEYRGLIAGLRALLGLGAEGEPVEVRMDSRLVIEQMSGRWKVKHEGLRPLA 103
Query: 70 AELCGEAKRLK 80
AE G A+R +
Sbjct: 104 AEAAGLARRFR 114
>gi|392417072|ref|YP_006453677.1| fructose-2,6-bisphosphatase [Mycobacterium chubuense NBB4]
gi|390616848|gb|AFM17998.1| fructose-2,6-bisphosphatase [Mycobacterium chubuense NBB4]
Length = 369
Score = 36.6 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 14 NGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAEL 72
+ +G TNNVA+Y LI GL+ A + G V DSKLV Q+ W ++ P +A L
Sbjct: 38 SAIGRATNNVAEYRGLIAGLQAASEVGATEADVYMDSKLVVEQMAGRWRVKH--PDLAPL 95
Query: 73 CGEAKRLKDKF 83
+A+ + + F
Sbjct: 96 HQQARDIANTF 106
>gi|356569582|ref|XP_003552978.1| PREDICTED: uncharacterized protein LOC100797050 [Glycine max]
Length = 2073
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 17 GITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC 58
G+ +NN A+Y +LI GL+ + G N +RGDS+LV Q+
Sbjct: 1676 GLCSNNEAEYEALIAGLEILISLGARNVNIRGDSELVLRQLT 1717
>gi|145296194|ref|YP_001139015.1| bifunctional RNase H/acid phosphatase [Corynebacterium glutamicum
R]
gi|140846114|dbj|BAF55113.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 380
Score = 36.6 bits (83), Expect = 1.9, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 14/95 (14%)
Query: 4 ADDGSLIYNHNGVGI-----------TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKL 52
A G+++Y+ N + TNNVA+Y L+ GLK A + G + V DSKL
Sbjct: 18 AGSGTVVYSDNKAEVLKEIAYVVGTKATNNVAEYRGLLEGLKAARELGATSVDVYMDSKL 77
Query: 53 VHMQVCC-WLMEDQTPGMAELCGEAKRLKDKFLSI 86
V Q+ W ++ P M L EAK + + S+
Sbjct: 78 VVEQMSGRWKIKH--PDMKVLALEAKEIASEIGSV 110
>gi|406904481|gb|EKD46245.1| ribonuclease HI [uncultured bacterium]
Length = 136
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 10/73 (13%)
Query: 3 RADDGSLIYNHNG---------VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLV 53
RA G +I + G +GI TNN A+Y +LI GLK+ QKG DS+LV
Sbjct: 16 RAATGIIIKDQTGKTLYRLSKYLGIATNNQAEYAALIQGLKFLTQKGIKIVACYLDSELV 75
Query: 54 HMQVC-CWLMEDQ 65
Q+ + ++DQ
Sbjct: 76 VRQLNGLYRIKDQ 88
>gi|32488515|emb|CAE03267.1| OSJNBa0011J08.22 [Oryza sativa Japonica Group]
gi|38345859|emb|CAD41156.2| OSJNBa0064M23.1 [Oryza sativa Japonica Group]
Length = 586
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 11/73 (15%)
Query: 19 TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV-----CCWLMEDQTPGMAELC 73
TNN A+Y L+ G++ A G V+GDS+LV QV C +P +++
Sbjct: 36 ATNNTAEYEGLLAGIRAAAALGVRRLIVKGDSELVANQVHKDYKCS------SPELSKYL 89
Query: 74 GEAKRLKDKFLSI 86
E ++L+ +F I
Sbjct: 90 AEVRKLEKRFDGI 102
>gi|417971389|ref|ZP_12612315.1| bifunctional RNase H/acid phosphatase [Corynebacterium glutamicum
S9114]
gi|344044315|gb|EGV39993.1| bifunctional RNase H/acid phosphatase [Corynebacterium glutamicum
S9114]
Length = 382
Score = 36.6 bits (83), Expect = 2.0, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 14/95 (14%)
Query: 4 ADDGSLIYNHNGVGI-----------TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKL 52
A G+++Y+ N + TNNVA+Y L+ GLK A + G + V DSKL
Sbjct: 18 AGSGTVVYSDNKAEVLKEIAYVVGTKATNNVAEYRGLLEGLKAARELGATSVDVYMDSKL 77
Query: 53 VHMQVCC-WLMEDQTPGMAELCGEAKRLKDKFLSI 86
V Q+ W ++ P M L EAK + + S+
Sbjct: 78 VVEQMSGRWKIKH--PDMKVLAIEAKEIASEIGSV 110
>gi|110294164|gb|ABG66534.1| reverse transcriptase [Phytophthora ramorum]
Length = 704
Score = 36.6 bits (83), Expect = 2.0, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 23/38 (60%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TNN A+Y +L+LG++ A G V GDS LV QV
Sbjct: 7 TNNTAEYTALLLGMRAAADHGATRVHVEGDSTLVIQQV 44
>gi|53749349|gb|AAU90208.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1862
Score = 36.6 bits (83), Expect = 2.0, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1309 DGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1368
Query: 47 RGDSKLVHMQVC 58
GDS+LV Q+C
Sbjct: 1369 LGDSQLVVNQLC 1380
>gi|19553436|ref|NP_601438.1| bifunctional RNase H/acid phosphatase [Corynebacterium glutamicum
ATCC 13032]
gi|62391077|ref|YP_226479.1| bifunctional RNase H/acid phosphatase [Corynebacterium glutamicum
ATCC 13032]
gi|418244137|ref|ZP_12870562.1| bifunctional RNase H/acid phosphatase [Corynebacterium glutamicum
ATCC 14067]
gi|19110481|dbj|BAB85788.1| RNase HI [Corynebacterium glutamicum]
gi|21325007|dbj|BAB99629.1| Phosphoglycerate mutase/fructose-2,6-bisphosphatase
[Corynebacterium glutamicum ATCC 13032]
gi|41326416|emb|CAF20578.1| Ribonuclease HI [Corynebacterium glutamicum ATCC 13032]
gi|354511814|gb|EHE84718.1| bifunctional RNase H/acid phosphatase [Corynebacterium glutamicum
ATCC 14067]
gi|385144336|emb|CCH25375.1| hypothetical protein WA5_2155 [Corynebacterium glutamicum K051]
Length = 382
Score = 36.6 bits (83), Expect = 2.0, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 14/95 (14%)
Query: 4 ADDGSLIYNHNGVGI-----------TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKL 52
A G+++Y+ N + TNNVA+Y L+ GLK A + G + V DSKL
Sbjct: 18 AGSGTVVYSDNKAEVLKEIAYVVGTKATNNVAEYRGLLEGLKAARELGATSVDVYMDSKL 77
Query: 53 VHMQVCC-WLMEDQTPGMAELCGEAKRLKDKFLSI 86
V Q+ W ++ P M L EAK + + S+
Sbjct: 78 VVEQMSGRWKIKH--PDMKVLAIEAKEIASEIGSV 110
>gi|62734315|gb|AAX96424.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
Japonica Group]
Length = 1587
Score = 36.6 bits (83), Expect = 2.0, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 9/56 (16%)
Query: 7 GSLIYNHNGVGI---------TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLV 53
+++++ NGV I TTNN A+Y +++LGL+ A G +R DSKLV
Sbjct: 1242 AAVLFSPNGVPIRYAARLQFDTTNNAAEYEAVLLGLRKAKALGVRRLLIRTDSKLV 1297
>gi|16905207|gb|AAL31077.1|AC091749_6 putative polyprotein [Oryza sativa Japonica Group]
gi|22655740|gb|AAN04157.1| Putative polyprotein [Oryza sativa Japonica Group]
gi|31431207|gb|AAP53022.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1265
Score = 36.6 bits (83), Expect = 2.0, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 9/56 (16%)
Query: 7 GSLIYNHNGVGI---------TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLV 53
+++++ NGV I TTNN A+Y +++LGL+ A G +R DSKLV
Sbjct: 711 AAVLFSPNGVPIRYAARLQFDTTNNAAEYEAVLLGLRKAKALGVRRLLIRTDSKLV 766
>gi|18057150|gb|AAL58173.1|AC093181_19 putative polyprotein [Oryza sativa Japonica Group]
Length = 1931
Score = 36.6 bits (83), Expect = 2.0, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 9/56 (16%)
Query: 7 GSLIYNHNGVGI---------TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLV 53
+++++ NGV I TTNN A+Y +++LGL+ A G +R DSKLV
Sbjct: 1425 AAVLFSPNGVPIRYVARLQFDTTNNAAEYEAVLLGLRKAKALGVRRLLIRTDSKLV 1480
>gi|38345984|emb|CAE01996.2| OSJNBb0033G08.12 [Oryza sativa Japonica Group]
Length = 1847
Score = 36.6 bits (83), Expect = 2.0, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 9/56 (16%)
Query: 7 GSLIYNHNGVGI---------TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLV 53
+++++ NGV I TTNN A+Y +++LGL+ A G +R DSKLV
Sbjct: 1384 AAVLFSPNGVPIWYAARLQFDTTNNAAEYEAVLLGLRKAKALGVRRLLIRTDSKLV 1439
>gi|242117547|dbj|BAH80030.1| putative unclassified transposon protein [Oryza sativa Indica
Group]
Length = 893
Score = 36.6 bits (83), Expect = 2.0, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC--CWLMEDQTPGMAELCGEAK 77
+NN A+Y +L+ GL+ A R +S+LV QV C +D+ M C E +
Sbjct: 712 SNNTAEYEALLHGLRVATVLSMHRVLARANSQLVFCQVMKDCGCSDDK---MTPYCQEVR 768
Query: 78 RLKDKF 83
+L++KF
Sbjct: 769 KLEEKF 774
>gi|147809593|emb|CAN77869.1| hypothetical protein VITISV_031999 [Vitis vinifera]
Length = 1336
Score = 36.6 bits (83), Expect = 2.0, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 19 TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
T NN+ +Y + ILGL+ AL+ G V GDS LV Q+
Sbjct: 987 TMNNIVEYEACILGLETALELGIRQMEVFGDSNLVLRQI 1025
>gi|110288971|gb|AAP53331.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 2035
Score = 36.6 bits (83), Expect = 2.0, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 9/56 (16%)
Query: 7 GSLIYNHNGVGI---------TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLV 53
+++++ NGV I TTNN A+Y +++LGL+ A G +R DSKLV
Sbjct: 1529 AAVLFSPNGVPIRYVARLQFDTTNNAAEYEAVLLGLRKAKALGVRRLLIRTDSKLV 1584
>gi|108864276|gb|ABA92927.2| retrotransposon protein, putative, Ty3-gypsy subclass, expressed
[Oryza sativa Japonica Group]
Length = 1590
Score = 36.6 bits (83), Expect = 2.0, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 9/56 (16%)
Query: 7 GSLIYNHNGVGI---------TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLV 53
+++++ NGV I TTNN A+Y +++LGL+ A G +R DSKLV
Sbjct: 1245 AAVLFSPNGVPIRYAARLQFDTTNNAAEYEAVLLGLRKAKALGVRRLLIRTDSKLV 1300
>gi|90265091|emb|CAH67763.1| H0124E07.10 [Oryza sativa Indica Group]
Length = 1761
Score = 36.6 bits (83), Expect = 2.0, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 9/56 (16%)
Query: 7 GSLIYNHNGVGI---------TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLV 53
+++++ NGV I TTNN A+Y +++LGL+ A G +R DSKLV
Sbjct: 1236 AAVLFSPNGVPIRYAARLQFDTTNNAAEYEAVLLGLRKAKALGVRRLLIRTDSKLV 1291
>gi|50540675|gb|AAT77832.1| putative gag-pol precursor [Oryza sativa Japonica Group]
gi|108709121|gb|ABF96916.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1631
Score = 36.6 bits (83), Expect = 2.0, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 9/56 (16%)
Query: 7 GSLIYNHNGVGI---------TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLV 53
+++++ NGV I TTNN A+Y +++LGL+ A G +R DSKLV
Sbjct: 1138 AAVLFSPNGVPIRYAARLQFDTTNNAAEYEAVLLGLRKAKALGVRRLLIRTDSKLV 1193
>gi|38344375|emb|CAE02251.2| OSJNBb0032E06.9 [Oryza sativa Japonica Group]
Length = 1242
Score = 36.6 bits (83), Expect = 2.0, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMEDQT--PGMAELCGEAK 77
TNN+A+Y L+ GL+ A G V GDS+LV QVC E Q P M + +
Sbjct: 689 TNNMAEYEGLLAGLRVAAGLGIRRLLVFGDSQLVVNQVC---KEYQCSDPQMDAYVRQVR 745
Query: 78 RLKDKFLSI 86
R++ F I
Sbjct: 746 RMERHFDGI 754
>gi|34015355|gb|AAQ56544.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
Length = 1378
Score = 36.6 bits (83), Expect = 2.0, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 7/70 (10%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMED---QTPGMAELCGEA 76
TNN+A++ L+ G++ A+ G V+GDS+LV QV +D +P +++ E
Sbjct: 1050 TNNIAEFEGLLAGIRAAIALGVKRLIVKGDSELVANQV----HKDYKCSSPELSKYLAEV 1105
Query: 77 KRLKDKFLSI 86
+L+ +F I
Sbjct: 1106 SKLEKRFDGI 1115
>gi|359726860|ref|ZP_09265556.1| ribonuclease HI [Leptospira weilii str. 2006001855]
Length = 178
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%)
Query: 5 DDGSLIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
DD +G TTNNVA++ SL GL+ +++ F V DS+LV QV
Sbjct: 75 DDKEEFRISERIGETTNNVAEWASLKKGLEECIRRKFDTIHVYMDSELVVRQV 127
>gi|206891174|ref|YP_002248860.1| RNase H [Thermodesulfovibrio yellowstonii DSM 11347]
gi|206743112|gb|ACI22169.1| RNase H [Thermodesulfovibrio yellowstonii DSM 11347]
Length = 132
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 16 VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMEDQTPGMAELCGE 75
+G TTNNVA+Y +LI GL+ AL++ + DS+L+ Q+ + + + + L +
Sbjct: 37 IGKTTNNVAEYTALIKGLEEALRQKAQEIEIFSDSELLVHQING-IYKVRNKNLVPLYEK 95
Query: 76 AKRLKDKF 83
AK+L F
Sbjct: 96 AKKLLSNF 103
>gi|38346194|emb|CAD39523.2| OSJNBa0027O01.10 [Oryza sativa Japonica Group]
Length = 2020
Score = 36.6 bits (83), Expect = 2.1, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 31/72 (43%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A Y L+ GL+ A G V
Sbjct: 1434 DGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATNNMAVYEGLLAGLRVAAGLGIRRLLV 1493
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1494 LGDSQLVINQVC 1505
>gi|356561241|ref|XP_003548891.1| PREDICTED: uncharacterized protein LOC100803738 [Glycine max]
Length = 2190
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
T N+A+Y + ILG++ A+ G N + GDS LV Q+ W E + PG+ AKR
Sbjct: 1654 TKNMAEYEACILGIEKAIDLGIKNLDIYGDSALVINQIKGEW--ETRHPGLIPYKDYAKR 1711
Query: 79 L 79
L
Sbjct: 1712 L 1712
>gi|20279463|gb|AAM18743.1|AC092548_21 putative polyprotein [Oryza sativa Japonica Group]
Length = 356
Score = 36.6 bits (83), Expect = 2.1, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMED---QTPGMAELCGEA 76
TNN A+Y L+ G+K A G V+GDS+LV QV +D +P +++ E
Sbjct: 236 TNNTAEYEGLLAGIKAAAALGVRRLIVKGDSELVANQV----HKDYKCSSPELSKYLAEV 291
Query: 77 KRLKDKFLSI 86
++L+ F I
Sbjct: 292 RKLEKMFNGI 301
>gi|392400991|ref|YP_006437591.1| bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis Cp162]
gi|390532069|gb|AFM07798.1| Bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis Cp162]
Length = 363
Score = 36.6 bits (83), Expect = 2.1, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 15 GVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELC 73
VG TNNVA+Y +L+ GL A + G V DSKLV Q+ W ++ P M +L
Sbjct: 17 AVGTATNNVAEYHALLNGLTAARELGATEVDVLMDSKLVVEQMSGRWKIKH--PDMKQLA 74
Query: 74 GEAKRLKDKFLSI 86
+ + F SI
Sbjct: 75 LSCQHIASGFASI 87
>gi|352681730|ref|YP_004892254.1| ribonuclease HI [Thermoproteus tenax Kra 1]
gi|350274529|emb|CCC81174.1| ribonuclease HI [Thermoproteus tenax Kra 1]
Length = 193
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 12/63 (19%)
Query: 7 GSLIYNHNGVGIT------------TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVH 54
G +IY NG + TNNVA+Y +L LK AL+ G V+GDS+LV
Sbjct: 23 GFVIYGENGKRVARGYGVACSGSSCTNNVAEYTALREALKRALELGCSQVVVKGDSQLVV 82
Query: 55 MQV 57
Q+
Sbjct: 83 KQI 85
>gi|147818449|emb|CAN60892.1| hypothetical protein VITISV_040647 [Vitis vinifera]
Length = 1795
Score = 36.6 bits (83), Expect = 2.1, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TNN+ +Y + ILGL+ AL+ G V GDS LV Q+
Sbjct: 1411 TNNIVEYEACILGLETALELGIRQMXVFGDSNLVLRQI 1448
>gi|110288962|gb|AAP53313.2| transposon protein, putative, unclassified [Oryza sativa Japonica
Group]
Length = 411
Score = 36.6 bits (83), Expect = 2.1, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMED---QTPGMAELCGEA 76
TNN A+Y L+ G+K A G V+GDS+LV QV +D +P +++ E
Sbjct: 291 TNNTAEYEGLLAGIKAAAALGVRRLIVKGDSELVANQV----HKDYKCSSPELSKYLAEV 346
Query: 77 KRLKDKFLSI 86
++L+ F I
Sbjct: 347 RKLEKMFNGI 356
>gi|32480095|emb|CAE01986.1| OSJNBb0033G08.2 [Oryza sativa Japonica Group]
gi|38346047|emb|CAD39751.2| OSJNBa0059D20.19 [Oryza sativa Japonica Group]
Length = 581
Score = 36.6 bits (83), Expect = 2.1, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 7/70 (10%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMED---QTPGMAELCGEA 76
TNN A+Y L+ G++ A G V+GDS+LV QV +D +P +++ E
Sbjct: 56 TNNTAEYEGLLAGIRAAAVLGVKRLIVKGDSELVANQV----HKDYKCSSPELSKYLAEV 111
Query: 77 KRLKDKFLSI 86
++L+ +F I
Sbjct: 112 RKLEKRFHGI 121
>gi|356522885|ref|XP_003530073.1| PREDICTED: uncharacterized protein LOC100789592 [Glycine max]
Length = 2315
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC-CWLMEDQTPGMAELCGEAKR 78
TNNVA+Y + ILG++ A+ N + GDS LV Q+ W E + PG+ A+R
Sbjct: 1779 TNNVAEYEACILGIEKAIDLRIKNLDIYGDSALVINQIKGEW--ETRHPGLIPYKDYARR 1836
Query: 79 L 79
L
Sbjct: 1837 L 1837
>gi|108709395|gb|ABF97190.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1773
Score = 36.6 bits (83), Expect = 2.1, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+L QV W D M E ++
Sbjct: 1304 SHNVAEYEALLHGLRIAISLGIRRLIVRGDSQLGVNQVTKEWSCLDVN--MTAYRQEVRK 1361
Query: 79 LKDKF 83
L+DKF
Sbjct: 1362 LEDKF 1366
>gi|296393054|ref|YP_003657938.1| phosphoglycerate mutase [Segniliparus rotundus DSM 44985]
gi|296180201|gb|ADG97107.1| Phosphoglycerate mutase [Segniliparus rotundus DSM 44985]
Length = 378
Score = 36.6 bits (83), Expect = 2.1, Method: Composition-based stats.
Identities = 21/42 (50%), Positives = 26/42 (61%)
Query: 16 VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
+G TNNVA+Y LI GL+ A + G VR DSKLV Q+
Sbjct: 38 IGHATNNVAEYRGLIAGLEAAKELGASEVLVRMDSKLVVEQM 79
>gi|421098044|ref|ZP_15558720.1| ribonuclease HI [Leptospira borgpetersenii str. 200901122]
gi|410798960|gb|EKS01044.1| ribonuclease HI [Leptospira borgpetersenii str. 200901122]
Length = 129
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%)
Query: 5 DDGSLIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC 58
DD +G TTNNVA++ SL GL+ +++ F V DS+LV QV
Sbjct: 26 DDKEEFRISERIGETTNNVAEWASLKKGLEECIRRKFDTIHVYMDSELVVRQVS 79
>gi|385807968|ref|YP_005844365.1| Bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis 267]
gi|383805361|gb|AFH52440.1| Bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis 267]
Length = 386
Score = 36.6 bits (83), Expect = 2.2, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 16 VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCG 74
VG TNNVA+Y +L+ GL A + G V DSKLV Q+ W ++ P M +L
Sbjct: 40 VGTATNNVAEYHALLNGLTAARELGATEVDVLMDSKLVVEQMSGRWKIKH--PDMKQLAL 97
Query: 75 EAKRLKDKFLSI 86
+ + F SI
Sbjct: 98 SCQHIASGFASI 109
>gi|379715775|ref|YP_005304112.1| Bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis 316]
gi|386740800|ref|YP_006213980.1| Bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis 31]
gi|387139069|ref|YP_005695048.1| Bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis CIP 52.97]
gi|387141054|ref|YP_005697032.1| Bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis 1/06-A]
gi|389850822|ref|YP_006353057.1| Bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis 258]
gi|349735547|gb|AEQ07025.1| Bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis CIP 52.97]
gi|355392845|gb|AER69510.1| Bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis 1/06-A]
gi|377654481|gb|AFB72830.1| Bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis 316]
gi|384477494|gb|AFH91290.1| Bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis 31]
gi|388248128|gb|AFK17119.1| Bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis 258]
Length = 385
Score = 36.6 bits (83), Expect = 2.2, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 16 VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCG 74
VG TNNVA+Y +L+ GL A + G V DSKLV Q+ W ++ P M +L
Sbjct: 40 VGTATNNVAEYHALLNGLTAARELGATEVDVLMDSKLVVEQMSGRWKIKH--PDMKQLAL 97
Query: 75 EAKRLKDKFLSI 86
+ + F SI
Sbjct: 98 SCQHIASGFASI 109
>gi|300858913|ref|YP_003783896.1| hypothetical protein cpfrc_01496 [Corynebacterium
pseudotuberculosis FRC41]
gi|375289094|ref|YP_005123635.1| bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis 3/99-5]
gi|383314669|ref|YP_005375524.1| Bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis P54B96]
gi|384505083|ref|YP_005681753.1| Bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis 1002]
gi|384507183|ref|YP_005683852.1| Bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis C231]
gi|384509271|ref|YP_005685939.1| Bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis I19]
gi|384511360|ref|YP_005690938.1| Bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis PAT10]
gi|387137006|ref|YP_005692986.1| bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis 42/02-A]
gi|300686367|gb|ADK29289.1| hypothetical protein cpfrc_01496 [Corynebacterium
pseudotuberculosis FRC41]
gi|302206612|gb|ADL10954.1| Bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis C231]
gi|302331163|gb|ADL21357.1| Bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis 1002]
gi|308276856|gb|ADO26755.1| Bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis I19]
gi|341825299|gb|AEK92820.1| Bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis PAT10]
gi|348607451|gb|AEP70724.1| Bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis 42/02-A]
gi|371576383|gb|AEX39986.1| Bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis 3/99-5]
gi|380870170|gb|AFF22644.1| Bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis P54B96]
Length = 385
Score = 36.6 bits (83), Expect = 2.2, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 16 VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCG 74
VG TNNVA+Y +L+ GL A + G V DSKLV Q+ W ++ P M +L
Sbjct: 40 VGTATNNVAEYHALLNGLTAARELGATEVDVLMDSKLVVEQMSGRWKIKH--PDMKQLAL 97
Query: 75 EAKRLKDKFLSI 86
+ + F SI
Sbjct: 98 SCQHIASGFASI 109
>gi|50897347|gb|AAT85798.1| GAG-POL protein, putative [Oryza sativa Japonica Group]
gi|108709085|gb|ABF96880.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 403
Score = 36.6 bits (83), Expect = 2.2, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV W D M E +
Sbjct: 278 SHNVAEYEALLHGLRIAICLGIRRLIVRGDSQLVVNQVMKEWSCPDDN--MTAYRQEVHK 335
Query: 79 LKDKF 83
L++KF
Sbjct: 336 LENKF 340
>gi|55733788|gb|AAV59295.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1764
Score = 36.6 bits (83), Expect = 2.2, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 35/79 (44%), Gaps = 19/79 (24%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1358 DGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1417
Query: 47 RGDSKLVHMQVCCWLMEDQ 65
GDS+LV QV L ED+
Sbjct: 1418 LGDSQLVVNQVYKTLPEDR 1436
>gi|348683122|gb|EGZ22937.1| hypothetical protein PHYSODRAFT_252122 [Phytophthora sojae]
Length = 333
Score = 36.2 bits (82), Expect = 2.3, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 17 GITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMEDQTPGMAELCGEA 76
G+T N A+Y L+ G+ ALQ+ + V GDS++V QV + +Q P L E
Sbjct: 92 GVTVN--AEYYGLLKGMTMALQRDIADLVVVGDSRIVIQQVQGLINCNQPPLQRRL-AEC 148
Query: 77 KRLKDKFLSI 86
LK+KF ++
Sbjct: 149 HVLKEKFRTV 158
>gi|356560241|ref|XP_003548402.1| PREDICTED: uncharacterized protein LOC100788372 [Glycine max]
Length = 2048
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 17 GITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC 58
G+ +NN A+Y +LI GL+ + G N +RGDS+LV Q+
Sbjct: 1470 GLCSNNEAEYEALIRGLEILISLGARNVNIRGDSELVLRQLT 1511
>gi|452957940|gb|EME63297.1| bifunctional RNase H/acid phosphatase [Rhodococcus ruber BKS
20-38]
Length = 361
Score = 36.2 bits (82), Expect = 2.3, Method: Composition-based stats.
Identities = 21/42 (50%), Positives = 25/42 (59%)
Query: 16 VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
+G TNNVA+Y LI GL A + G VR DSKLV Q+
Sbjct: 41 IGRATNNVAEYQGLIAGLTAAAELGADEVDVRMDSKLVVEQM 82
>gi|448406248|ref|ZP_21572770.1| ribonuclease H [Halosimplex carlsbadense 2-9-1]
gi|445678087|gb|ELZ30582.1| ribonuclease H [Halosimplex carlsbadense 2-9-1]
Length = 134
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 16 VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
+G +TNN +Y +LI GL+ A +K RGDS+++ QV
Sbjct: 42 IGESTNNRTEYHALIRGLEVASEKRCTEVEARGDSEVIVKQV 83
>gi|356519836|ref|XP_003528575.1| PREDICTED: uncharacterized protein LOC100807419 [Glycine max]
Length = 2270
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 18 ITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC-CWLMEDQTPGMAELCGEA 76
+ TNN+A+Y + ILG++ A+ N + GDS LV Q+ W E + PG+ A
Sbjct: 1732 VCTNNMAEYEACILGIEKAIDLRIKNLDIYGDSALVINQIKGEW--ETRHPGLIPYKDYA 1789
Query: 77 KRL 79
KRL
Sbjct: 1790 KRL 1792
>gi|145539484|ref|XP_001455432.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124423240|emb|CAK88035.1| unnamed protein product [Paramecium tetraurelia]
Length = 754
Score = 36.2 bits (82), Expect = 2.3, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 16 VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLV 53
+G TNNVA++ +L LG++Y L G GDSKL+
Sbjct: 656 LGKQTNNVAEFLALFLGIRYTLNLGINYLECFGDSKLI 693
>gi|32492248|emb|CAE03745.1| OSJNBa0019D11.11 [Oryza sativa Japonica Group]
Length = 1770
Score = 36.2 bits (82), Expect = 2.4, Method: Composition-based stats.
Identities = 29/100 (29%), Positives = 43/100 (43%), Gaps = 21/100 (21%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL GVG+T TNN+A+Y L+ GL+ A G V
Sbjct: 1296 DGSLSLQGAGVGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1355
Query: 47 RGDSKLVHMQVCCWLMEDQTPGMAELCGEAKRLKDKFLSI 86
GDS+LV Q +L + P E +R+ +++ +
Sbjct: 1356 LGDSQLVVNQA--YLADKTLPEDREGSERVRRISKRYVLV 1393
>gi|116310725|emb|CAH67521.1| OSIGBa0131L05.2 [Oryza sativa Indica Group]
Length = 1770
Score = 36.2 bits (82), Expect = 2.4, Method: Composition-based stats.
Identities = 29/100 (29%), Positives = 43/100 (43%), Gaps = 21/100 (21%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL GVG+T TNN+A+Y L+ GL+ A G V
Sbjct: 1296 DGSLSLQGAGVGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1355
Query: 47 RGDSKLVHMQVCCWLMEDQTPGMAELCGEAKRLKDKFLSI 86
GDS+LV Q +L + P E +R+ +++ +
Sbjct: 1356 LGDSQLVVNQA--YLADKTLPEDREGSERVRRISKRYVLV 1393
>gi|284030531|ref|YP_003380462.1| phosphoglycerate mutase [Kribbella flavida DSM 17836]
gi|283809824|gb|ADB31663.1| Phosphoglycerate mutase [Kribbella flavida DSM 17836]
Length = 374
Score = 36.2 bits (82), Expect = 2.4, Method: Composition-based stats.
Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 16 VGITTNNVAKYGSLILGLKYALQKG-FFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELC 73
+GI TNNVA+Y LI GL+ A + + VR DSKLV Q+ W ++ P M L
Sbjct: 43 IGIATNNVAEYSGLIAGLELAAEYAPDASIEVRMDSKLVVEQMAGRWKVKH--PDMKPLA 100
Query: 74 GEAKRL 79
+A+ L
Sbjct: 101 MKAQSL 106
>gi|110288557|gb|ABB46646.2| transposon protein, putative, unclassified [Oryza sativa Japonica
Group]
Length = 574
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 11/69 (15%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV-----CCWLMEDQTPGMAELCG 74
TNN A+Y L++GL+ A+ G V+ DS+LV QV C P + +
Sbjct: 167 TNNTAEYEGLLVGLRAAIALGVKRLIVKRDSELVTNQVHKDYKCS------NPKLTKYLA 220
Query: 75 EAKRLKDKF 83
E ++L+ KF
Sbjct: 221 EVRKLERKF 229
>gi|358445660|ref|ZP_09156257.1| putative bifunctional RNase H/acid phosphatase [Corynebacterium
casei UCMA 3821]
gi|356608441|emb|CCE54528.1| putative bifunctional RNase H/acid phosphatase [Corynebacterium
casei UCMA 3821]
Length = 391
Score = 36.2 bits (82), Expect = 2.4, Method: Composition-based stats.
Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 14/94 (14%)
Query: 4 ADDGSLIYNHNGVGI-----------TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKL 52
A G++IY +G I +TNNVA+Y L+ G++ A + G DSKL
Sbjct: 18 AGSGTVIYAADGKTILDEIVYVVGKKSTNNVAEYYGLLRGVERAAELGATEVEFFMDSKL 77
Query: 53 VHMQVCC-WLMEDQTPGMAELCGEAKRLKDKFLS 85
V Q+ W ++ P M +L EA++ D F S
Sbjct: 78 VVEQINGRWKIKH--PDMQKLAVEARKYIDTFDS 109
>gi|298711927|emb|CBJ48614.1| ribonuclease H [Ectocarpus siliculosus]
Length = 523
Score = 36.2 bits (82), Expect = 2.4, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 11 YNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
Y + G G TNN A+Y S+ILGLK A + V+GDS LV Q+
Sbjct: 79 YKYLGEG-KTNNEAEYESVILGLKAAAKLSITQLVVKGDSMLVIQQM 124
>gi|116309090|emb|CAH66197.1| OSIGBa0148D14.3 [Oryza sativa Indica Group]
Length = 988
Score = 36.2 bits (82), Expect = 2.4, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 24/39 (61%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC 58
TNN+A+Y L+ GL+ A G V GDS+LV QVC
Sbjct: 500 TNNMAEYEGLLAGLRLAAGLGIRRVLVLGDSQLVVNQVC 538
>gi|77550739|gb|ABA93536.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza
sativa Japonica Group]
Length = 338
Score = 36.2 bits (82), Expect = 2.5, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 26/39 (66%)
Query: 19 TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TTNN A+Y ++++GL+ A G + +R D+KLV QV
Sbjct: 36 TTNNTAEYEAVLMGLRKAKALGVRHLLIRTDTKLVASQV 74
>gi|52353561|gb|AAU44127.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1991
Score = 36.2 bits (82), Expect = 2.5, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 24/39 (61%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC 58
TNN+A+Y L+ GL+ A G V GDS+LV QVC
Sbjct: 1438 TNNMAEYEGLLAGLRVAAGMGIRCLLVLGDSQLVVNQVC 1476
>gi|41469126|gb|AAS07077.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|108708814|gb|ABF96609.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 516
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 19 TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC-CWLMEDQTPGMAELCGEAK 77
++NVA+Y +L+ L+ A+ G VRGDS+LV QV W D M E +
Sbjct: 237 ASHNVAEYEALLHRLRIAISLGIRRLIVRGDSQLVVNQVMKKWSCLDDN--MTAYRQEVR 294
Query: 78 RLKDKF 83
+L+DKF
Sbjct: 295 KLEDKF 300
>gi|62701710|gb|AAX92783.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
Japonica Group]
gi|77550530|gb|ABA93327.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1288
Score = 36.2 bits (82), Expect = 2.5, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G V GDS+LV QV W D M E ++
Sbjct: 938 SHNVAEYEALLHGLRIAISLGIRRLIVCGDSQLVVNQVMKEWSCLDDN--MTAYRQEVRK 995
Query: 79 LKDKF 83
L+DKF
Sbjct: 996 LEDKF 1000
>gi|398332684|ref|ZP_10517389.1| ribonuclease HI [Leptospira alexanderi serovar Manhao 3 str. L
60]
Length = 108
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 27/43 (62%)
Query: 16 VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC 58
+G TTNNVA++ SL GL+ +++ F V DS+LV QV
Sbjct: 16 IGETTNNVAEWASLKKGLEECIRRKFDTIHVYMDSELVVRQVS 58
>gi|302389500|ref|YP_003825321.1| ribonuclease H [Thermosediminibacter oceani DSM 16646]
gi|302200128|gb|ADL07698.1| ribonuclease H [Thermosediminibacter oceani DSM 16646]
Length = 142
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 9/60 (15%)
Query: 7 GSLIYNHNG---------VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
G +I + NG +G TTNN+A+Y +L+ LK AL+ G + DS+L+ Q+
Sbjct: 22 GIVILDENGNTLKEISDYIGQTTNNIAEYTALVTALKEALEMGCEEIGIFSDSELMVKQI 81
>gi|50355728|gb|AAT75253.1| putative gag-pol precursor [Oryza sativa Japonica Group]
gi|108711464|gb|ABF99259.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1980
Score = 36.2 bits (82), Expect = 2.5, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC 58
TNN+A+Y L+ GL+ A G V GDS+LV Q+C
Sbjct: 1442 TNNMAEYEGLLAGLRVAAGLGIRRLLVLGDSQLVVNQIC 1480
>gi|48475198|gb|AAT44267.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 1315
Score = 36.2 bits (82), Expect = 2.5, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G V GDS+LV QV W D M E ++
Sbjct: 1206 SHNVAEYEALLHGLRIAISLGIRRLIVCGDSQLVVNQVMKEWSCLDDN--MTAYRQEVRK 1263
Query: 79 LKDKF 83
L+DKF
Sbjct: 1264 LEDKF 1268
>gi|147820364|emb|CAN69840.1| hypothetical protein VITISV_008391 [Vitis vinifera]
Length = 1996
Score = 36.2 bits (82), Expect = 2.6, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 23/38 (60%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TNN+ Y + ILGL+ AL+ G V GDS LV Q+
Sbjct: 1560 TNNIVXYEACILGLETALELGIRQMEVFGDSNLVLRQI 1597
>gi|108707203|gb|ABF94998.1| transposon protein, putative, unclassified [Oryza sativa Japonica
Group]
Length = 977
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 11/69 (15%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV-----CCWLMEDQTPGMAELCG 74
TNN A+Y L+ G++ A G V+GDS+LV QV C P +++
Sbjct: 428 TNNTAEYEGLLAGIRAAATLGAKRLIVKGDSELVANQVHKDYKCS------NPKLSKYLA 481
Query: 75 EAKRLKDKF 83
E ++L+ KF
Sbjct: 482 EVRKLEKKF 490
>gi|417781679|ref|ZP_12429428.1| ribonuclease HI [Leptospira weilii str. 2006001853]
gi|410778410|gb|EKR63039.1| ribonuclease HI [Leptospira weilii str. 2006001853]
Length = 129
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%)
Query: 5 DDGSLIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
DD +G TTNNVA++ SL GL+ +++ F V DS+LV QV
Sbjct: 26 DDKEEFRISERIGETTNNVAEWASLKKGLEECIRRKFDTIHVYMDSELVVRQV 78
>gi|77555035|gb|ABA97831.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1564
Score = 36.2 bits (82), Expect = 2.7, Method: Composition-based stats.
Identities = 33/102 (32%), Positives = 42/102 (41%), Gaps = 24/102 (23%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1004 DGSLTLQGAGAGVTLTSPSGDVLKYVVRLDFRATNNMAEYEGLLAGLRAAAGMGIRRLLV 1063
Query: 47 RGDSKLVHMQVCCWLMEDQT--PGMAELCGEAKRLKDKFLSI 86
GDS+LV QV E Q P M E +R++ F I
Sbjct: 1064 LGDSQLVVNQVS---KEYQCTDPQMDAYVREVRRMERHFDGI 1102
>gi|19881548|gb|AAM00949.1|AC021892_13 Putative retroelement [Oryza sativa Japonica Group]
gi|31431082|gb|AAP52913.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1945
Score = 36.2 bits (82), Expect = 2.7, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMEDQTPGM 69
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV +ED+ G+
Sbjct: 1427 SHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQV--RKLEDKFEGL 1474
>gi|348678932|gb|EGZ18749.1| hypothetical protein PHYSODRAFT_502261 [Phytophthora sojae]
Length = 476
Score = 36.2 bits (82), Expect = 2.7, Method: Composition-based stats.
Identities = 19/38 (50%), Positives = 23/38 (60%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TNN A+Y +LI GL AL G V+GDS L+ QV
Sbjct: 78 TNNTAEYIALISGLTGALHHGVRRLTVKGDSTLILEQV 115
>gi|153003635|ref|YP_001377960.1| ribonuclease H [Anaeromyxobacter sp. Fw109-5]
gi|152027208|gb|ABS24976.1| ribonuclease H [Anaeromyxobacter sp. Fw109-5]
Length = 254
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 26/43 (60%)
Query: 16 VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC 58
+G +TNNVA+Y LILGL+ A G V DS+L+ Q+
Sbjct: 160 LGESTNNVAEYMGLILGLRRAKAMGIKELEVFADSELLVKQLA 202
>gi|108862185|gb|ABA96443.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1472
Score = 36.2 bits (82), Expect = 2.7, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 26/39 (66%)
Query: 19 TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TTNN+A+Y +++LGL+ A + G +R DSKLV V
Sbjct: 1145 TTNNMAEYEAVLLGLRKAKELGVRCLLIRTDSKLVASHV 1183
>gi|78708515|gb|ABB47490.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1783
Score = 36.2 bits (82), Expect = 2.7, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMED---QTPGMAELCGEA 76
TNN A+Y L+ G++ A G V+GDS+LV QV +D P +++ E
Sbjct: 1495 TNNTAEYEGLLAGIRAAAALGVKRLIVKGDSELVANQV----HKDYKCSNPELSKYLAEV 1550
Query: 77 KRLKDKFLSI 86
++L+ +F I
Sbjct: 1551 RKLEKRFDGI 1560
>gi|110288677|gb|ABB46880.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1759
Score = 36.2 bits (82), Expect = 2.7, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 23/39 (58%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC 58
TNN+A Y L+ GL+ A G V GDS+LV QVC
Sbjct: 1283 TNNMADYEGLLAGLRVAAGLGIRRLLVLGDSQLVVNQVC 1321
>gi|49328062|gb|AAT58762.1| putative polyprotein [Oryza sativa Japonica Group]
gi|49328085|gb|AAT58784.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1178
Score = 36.2 bits (82), Expect = 2.7, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMED---QTPGMAELCGEA 76
TNN A+Y L+ G++ A G V+GDS+LV QV +D P +++ E
Sbjct: 1050 TNNTAEYEGLLAGIRAAAALGVKRLIVKGDSELVANQV----HKDYKCSNPELSKYLAEV 1105
Query: 77 KRLKDKFLSI 86
++L+ +F I
Sbjct: 1106 RKLEKRFDGI 1115
>gi|21671881|gb|AAM74243.1|AC074355_5 Putative retroelement [Oryza sativa Japonica Group]
Length = 1233
Score = 36.2 bits (82), Expect = 2.7, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 23/39 (58%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC 58
TNN+A Y L+ GL+ A G V GDS+LV QVC
Sbjct: 757 TNNMADYEGLLAGLRVAAGLGIRRLLVLGDSQLVVNQVC 795
>gi|14018058|gb|AAK52121.1|AC079936_17 Putative retroelement [Oryza sativa Japonica Group]
Length = 2079
Score = 36.2 bits (82), Expect = 2.7, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMED---QTPGMAELCGEA 76
TNN A+Y L+ G++ A G V+GDS+LV QV +D P +++ E
Sbjct: 1560 TNNTAEYEGLLAGIRAAAALGVKRLIVKGDSELVANQV----HKDYKCSNPELSKYLAEV 1615
Query: 77 KRLKDKFLSI 86
++L+ +F I
Sbjct: 1616 RKLEKRFDGI 1625
>gi|32487613|emb|CAE05919.1| OSJNBa0034E24.13 [Oryza sativa Japonica Group]
Length = 523
Score = 36.2 bits (82), Expect = 2.8, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMED---QTPGMAELCGEA 76
TNN A+Y L+ G++ A G V+GDS+LV QV +D P +++ E
Sbjct: 385 TNNTAEYEGLLAGIRAAATLGVKRLIVKGDSELVTNQV----HKDYKCSNPELSKYLAEV 440
Query: 77 KRLKDKF 83
++L+ +F
Sbjct: 441 RKLEKRF 447
>gi|147832775|emb|CAN65896.1| hypothetical protein VITISV_027695 [Vitis vinifera]
Length = 2204
Score = 36.2 bits (82), Expect = 2.8, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TNN+ +Y + ILGL+ AL+ G V GDS +V Q+
Sbjct: 1682 TNNIVEYEACILGLETALELGIRQMEVFGDSNMVLRQI 1719
>gi|133751141|gb|ABO37966.1| putative pol protein [Vitis vinifera]
Length = 169
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 19 TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TNN+ +Y + ILGL+ AL+ G +V GDS +V Q+
Sbjct: 18 ATNNIIEYEACILGLETALELGIRQMKVFGDSNMVLRQI 56
>gi|31415903|gb|AAP50924.1| putative GAG-POL precursor [Oryza sativa Japonica Group]
Length = 1799
Score = 36.2 bits (82), Expect = 2.8, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMED---QTPGMAELCGEA 76
TN A+Y L+ G++ A G V+GDSKLV QV +D +P +++ E
Sbjct: 1296 TNKTAEYEGLLAGIRVAAALGVKRLIVKGDSKLVANQV----HKDYKCSSPELSKYLAEV 1351
Query: 77 KRLKDKFLSI 86
++L+ +F I
Sbjct: 1352 RKLEKRFDGI 1361
>gi|29788812|gb|AAP03358.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1778
Score = 36.2 bits (82), Expect = 2.8, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMED---QTPGMAELCGEA 76
TN A+Y L+ G++ A G V+GDSKLV QV +D +P +++ E
Sbjct: 1275 TNKTAEYEGLLAGIRVAAALGVKRLIVKGDSKLVANQV----HKDYKCSSPELSKYLAEV 1330
Query: 77 KRLKDKFLSI 86
++L+ +F I
Sbjct: 1331 RKLEKRFDGI 1340
>gi|57834067|emb|CAD40313.2| OSJNBb0013O03.8 [Oryza sativa Japonica Group]
Length = 717
Score = 36.2 bits (82), Expect = 2.8, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 7/70 (10%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMED---QTPGMAELCGEA 76
TNN+A+Y L+ G++ A G V+GDS+LV QV +D +P +++ E
Sbjct: 271 TNNIAEYEGLLAGIRAAAALGVKWLIVKGDSELVANQV----HKDYKCSSPELSKYLAEV 326
Query: 77 KRLKDKFLSI 86
++L+ +F I
Sbjct: 327 RKLERRFDGI 336
>gi|18997217|gb|AAL83334.1|AC074282_1 Putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|20042895|gb|AAM08723.1|AC116601_16 Putative gag-pol polyprotein [Oryza sativa Japonica Group]
Length = 489
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 11/69 (15%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV-----CCWLMEDQTPGMAELCG 74
TNN A+Y L++GL+ A+ G V+ DS+LV QV C P + +
Sbjct: 167 TNNTAEYEGLLVGLRAAIALGVKRLIVKRDSELVTNQVHKDYKCS------NPKLTKYLA 220
Query: 75 EAKRLKDKF 83
E ++L+ KF
Sbjct: 221 EVRKLERKF 229
>gi|317506107|ref|ZP_07963932.1| phosphoglycerate mutase [Segniliparus rugosus ATCC BAA-974]
gi|316255606|gb|EFV14851.1| phosphoglycerate mutase [Segniliparus rugosus ATCC BAA-974]
Length = 371
Score = 36.2 bits (82), Expect = 2.9, Method: Composition-based stats.
Identities = 20/42 (47%), Positives = 26/42 (61%)
Query: 16 VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
+G TNNVA+Y L+ GL+ A + G VR DSKLV Q+
Sbjct: 42 IGRATNNVAEYRGLVAGLEAAKELGARRVAVRMDSKLVVEQM 83
>gi|108864695|gb|ABG22602.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 822
Score = 36.2 bits (82), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 7/70 (10%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMED---QTPGMAELCGEA 76
TNN A+Y L+ G++ A G V+GDS+LV QV +D +P +++ E
Sbjct: 360 TNNTAEYKGLLAGIRAAAALGVKRLVVKGDSELVANQV----HKDYKCSSPELSKYLTEV 415
Query: 77 KRLKDKFLSI 86
++L+ +F I
Sbjct: 416 RKLEKRFDGI 425
>gi|19881765|gb|AAM01166.1|AC113336_18 Putative retroelement [Oryza sativa Japonica Group]
gi|31430472|gb|AAP52381.1| transposon protein, putative, unclassified [Oryza sativa Japonica
Group]
Length = 627
Score = 36.2 bits (82), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 7/70 (10%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMED---QTPGMAELCGEA 76
TNN A+Y L++G++ A G V+GDS+LV QV +D P +++ E
Sbjct: 261 TNNTAEYEGLLVGIRAAAALGAKRLIVKGDSELVANQV----HKDYKCSNPELSKYLAEV 316
Query: 77 KRLKDKFLSI 86
++L+ +F I
Sbjct: 317 RKLEKRFDRI 326
>gi|385991572|ref|YP_005909870.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
CCDC5180]
gi|339298765|gb|AEJ50875.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
CCDC5180]
Length = 241
Score = 36.2 bits (82), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 9 LIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTP 67
L + +G TNNVA+Y LI GL A++ G V DSKLV Q+ W ++ P
Sbjct: 33 LAESKQAIGRATNNVAEYRGLIAGLDDAVKLGATEAAVLMDSKLVVEQMSGRWKVKH--P 90
Query: 68 GMAELCGEAKRLKDKFLSI 86
+ +L +A+ L +F I
Sbjct: 91 DLLKLYVQAQALASQFRRI 109
>gi|392943834|ref|ZP_10309476.1| fructose-2,6-bisphosphatase [Frankia sp. QA3]
gi|392287128|gb|EIV93152.1| fructose-2,6-bisphosphatase [Frankia sp. QA3]
Length = 378
Score = 35.8 bits (81), Expect = 3.0, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 4 ADDGSLIYNHNG-VGITTNNVAKYGSLILGLKYALQKG-FFNFRVRGDSKLVHMQVCC-W 60
A DG+++ +G TNNVA+Y LI GL+ A + VR DSKLV Q+ W
Sbjct: 31 AADGTVLAERAASIGHATNNVAEYSGLIAGLRAAAEIAPDAEVEVRMDSKLVVEQMSGRW 90
Query: 61 LMEDQTPGMAELCGEAKRLKDKFLSI 86
++ P M L EA L F ++
Sbjct: 91 KIKH--PAMRPLADEAAGLARGFPAV 114
>gi|356570351|ref|XP_003553353.1| PREDICTED: uncharacterized protein LOC100790215 [Glycine max]
Length = 2317
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
TNN+A+Y + ILG++ A+ N + GDS LV Q+ W E + PG+ AKR
Sbjct: 1781 TNNMAEYEACILGIEKAIDLRIKNLDIYGDSALVINQIKGEW--ETRHPGLIPYKDYAKR 1838
Query: 79 L 79
L
Sbjct: 1839 L 1839
>gi|227504616|ref|ZP_03934665.1| bifunctional RNase H/acid phosphatase [Corynebacterium striatum
ATCC 6940]
gi|227198826|gb|EEI78874.1| bifunctional RNase H/acid phosphatase [Corynebacterium striatum
ATCC 6940]
Length = 391
Score = 35.8 bits (81), Expect = 3.0, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 19 TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAK 77
+TNNVA+Y L+ GL+ A++ G + DSKLV Q+ W ++ P M L EA+
Sbjct: 44 STNNVAEYHGLLRGLEAAVEMGADDVDFYMDSKLVVEQMNGRWKIKH--PDMQALALEAR 101
Query: 78 RLKDKFLS 85
+L D+ S
Sbjct: 102 KLIDQIGS 109
>gi|147791400|emb|CAN76855.1| hypothetical protein VITISV_007394 [Vitis vinifera]
Length = 2130
Score = 35.8 bits (81), Expect = 3.0, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 19 TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLV 53
TTNN+ +Y + ILGL+ AL+ G V GDS L+
Sbjct: 1616 TTNNIVEYEACILGLETALELGIRQMEVFGDSNLL 1650
>gi|108711090|gb|ABF98885.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 2012
Score = 35.8 bits (81), Expect = 3.1, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1426 DGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1485
Query: 47 RGDSKLVHMQVC 58
G+S+LV QVC
Sbjct: 1486 LGNSQLVVNQVC 1497
>gi|50878478|gb|AAT85251.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1863
Score = 35.8 bits (81), Expect = 3.1, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1277 DGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1336
Query: 47 RGDSKLVHMQVC 58
G+S+LV QVC
Sbjct: 1337 LGNSQLVVNQVC 1348
>gi|18087677|gb|AAL58969.1|AC091811_18 putative gag-pol precursor [Oryza sativa Japonica Group]
Length = 1997
Score = 35.8 bits (81), Expect = 3.1, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1411 DGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1470
Query: 47 RGDSKLVHMQVC 58
G+S+LV QVC
Sbjct: 1471 LGNSQLVVNQVC 1482
>gi|386355036|ref|YP_006053282.1| bifunctional RNase H/acid phosphatase [Streptomyces cattleya NRRL
8057 = DSM 46488]
gi|365805544|gb|AEW93760.1| bifunctional RNase H/acid phosphatase [Streptomyces cattleya NRRL
8057 = DSM 46488]
Length = 420
Score = 35.8 bits (81), Expect = 3.1, Method: Composition-based stats.
Identities = 27/64 (42%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 16 VGITTNNVAKYGSLILGLKYALQ-KGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELC 73
+G TNNVA+Y LI GL+ A + VR DSKLV Q+ W ++ PGM L
Sbjct: 42 LGTATNNVAEYRGLIAGLRAAHELDPEARVEVRMDSKLVVEQMSGRWKIKH--PGMRPLA 99
Query: 74 GEAK 77
EA+
Sbjct: 100 AEAR 103
>gi|357398989|ref|YP_004910914.1| hypothetical protein SCAT_1387 [Streptomyces cattleya NRRL 8057 =
DSM 46488]
gi|337765398|emb|CCB74107.1| conserved protein of unknown function [Streptomyces cattleya NRRL
8057 = DSM 46488]
Length = 419
Score = 35.8 bits (81), Expect = 3.1, Method: Composition-based stats.
Identities = 27/64 (42%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 16 VGITTNNVAKYGSLILGLKYALQ-KGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELC 73
+G TNNVA+Y LI GL+ A + VR DSKLV Q+ W ++ PGM L
Sbjct: 41 LGTATNNVAEYRGLIAGLRAAHELDPEARVEVRMDSKLVVEQMSGRWKIKH--PGMRPLA 98
Query: 74 GEAK 77
EA+
Sbjct: 99 AEAR 102
>gi|77551551|gb|ABA94348.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1837
Score = 35.8 bits (81), Expect = 3.2, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 31/72 (43%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1400 DGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1459
Query: 47 RGDSKLVHMQVC 58
GDS+LV Q C
Sbjct: 1460 LGDSQLVVNQFC 1471
>gi|19881722|gb|AAM01123.1|AC108884_5 Putative retroelement [Oryza sativa Japonica Group]
gi|31431922|gb|AAP53628.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1292
Score = 35.8 bits (81), Expect = 3.2, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 9/60 (15%)
Query: 3 RADDGSLIYNHNGVGI---------TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLV 53
RA + +++ NGV I TTNN +Y +++LGL+ A G +R DSKLV
Sbjct: 967 RAGIAAALFSPNGVPIRYAARLQFDTTNNATEYEAVLLGLRKAKALGVQRLLIRTDSKLV 1026
>gi|147795549|emb|CAN67747.1| hypothetical protein VITISV_030426 [Vitis vinifera]
Length = 1605
Score = 35.8 bits (81), Expect = 3.2, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 21 NNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
NN+ +Y + ILGL+ AL+ G +V GDS LV Q+
Sbjct: 1183 NNIVEYEACILGLETALELGIRQMKVFGDSNLVLRQI 1219
>gi|147777981|emb|CAN69734.1| hypothetical protein VITISV_007859 [Vitis vinifera]
Length = 976
Score = 35.8 bits (81), Expect = 3.2, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 19 TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TTNN+ +Y + ILGL+ AL+ V GDS LV Q+
Sbjct: 438 TTNNIVEYEACILGLETALELDIRQMEVFGDSNLVLRQI 476
>gi|147781714|emb|CAN60825.1| hypothetical protein VITISV_027420 [Vitis vinifera]
Length = 1918
Score = 35.8 bits (81), Expect = 3.2, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 19 TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TTNN+ +Y + ILGL+ AL+ V GDS LV Q+
Sbjct: 1473 TTNNIVEYEACILGLETALELDIRQMEVFGDSNLVLRQI 1511
>gi|13940598|gb|AAK50400.1|AC021891_1 Putative retroelement [Oryza sativa Japonica Group]
Length = 1291
Score = 35.8 bits (81), Expect = 3.2, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 9/60 (15%)
Query: 3 RADDGSLIYNHNGVGI---------TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLV 53
RA + +++ NGV I TTNN +Y +++LGL+ A G +R DSKLV
Sbjct: 1062 RAGIAAALFSPNGVPIRYAARLQFDTTNNATEYEAVLLGLRKAKALGVQRLLIRTDSKLV 1121
>gi|108708701|gb|ABF96496.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1006
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 11/69 (15%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV-----CCWLMEDQTPGMAELCG 74
TN A+Y L+ G++ A G V+GDSKLV QV C +P +++
Sbjct: 564 TNKTAEYEGLLAGIRVAAALGVKRLIVKGDSKLVANQVHKDYKCS------SPELSKYLA 617
Query: 75 EAKRLKDKF 83
E ++L+ +F
Sbjct: 618 EVRKLEKRF 626
>gi|51038039|gb|AAT93843.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1723
Score = 35.8 bits (81), Expect = 3.4, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMED---QTPGMAELCGEA 76
TNN A+Y L+ G++ + G V+GDS+LV QV +D +P ++ E
Sbjct: 1174 TNNTAEYEGLLAGIRATVALGVKRLIVKGDSELVANQV----HKDYKCSSPKLSNYLAEV 1229
Query: 77 KRLKDKFLSI 86
++L+ +F I
Sbjct: 1230 RKLEKRFDGI 1239
>gi|51038140|gb|AAT93943.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1575
Score = 35.8 bits (81), Expect = 3.4, Method: Composition-based stats.
Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 21/100 (21%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A + G V
Sbjct: 1312 DGSLSLQGAGAGVTLTSPNGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAARLGIRRLLV 1371
Query: 47 RGDSKLVHMQVCCWLMEDQTPGMAELCGEAKRLKDKFLSI 86
GDS+LV Q +L + P E +R+ +++ +
Sbjct: 1372 LGDSQLVVNQA--YLADKTLPEDREGSERVRRISKRYVLV 1409
>gi|50540733|gb|AAT77889.1| putative polyprotein [Oryza sativa Japonica Group]
gi|108710909|gb|ABF98704.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1851
Score = 35.8 bits (81), Expect = 3.4, Method: Composition-based stats.
Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 21/100 (21%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A + G V
Sbjct: 1377 DGSLSLQGAGAGVTLTSSSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAARLGIRRLLV 1436
Query: 47 RGDSKLVHMQVCCWLMEDQTPGMAELCGEAKRLKDKFLSI 86
GDS+LV Q +L + P E +R+ +++ +
Sbjct: 1437 LGDSQLVVNQA--YLADKTLPEDREGSERVRRISKRYVLV 1474
>gi|383788536|ref|YP_005473105.1| putative ribonuclease [Caldisericum exile AZM16c01]
gi|381364173|dbj|BAL81002.1| putative ribonuclease [Caldisericum exile AZM16c01]
Length = 132
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 6 DGSLIY-NHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMED 64
D +IY +GI TNNVA+Y +++ ++ A ++ F + DS LV Q+ + +
Sbjct: 26 DAKIIYVMSESIGIATNNVAEYKAILKSMEEARRRNFKSVSFFSDSLLVVSQL-NGIYKV 84
Query: 65 QTPGMAELCGEAKRLKDKFLSI 86
++ + L E K L+ +F S+
Sbjct: 85 KSKDLFTLYEEVKNLEKEFESV 106
>gi|54291771|gb|AAV32140.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1302
Score = 35.8 bits (81), Expect = 3.4, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMED---QTPGMAELCGEA 76
TNN A+Y L+ G++ A G V+GDS+LV QV +D P +++ E
Sbjct: 866 TNNTAEYEGLLAGIRAAAALGVKRLIVKGDSELVANQV----HKDYKCSCPELSKYLAEV 921
Query: 77 KRLKDKFLSI 86
++L+ +F I
Sbjct: 922 RKLEKRFDGI 931
>gi|50511459|gb|AAT77381.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1672
Score = 35.8 bits (81), Expect = 3.4, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMED---QTPGMAELCGEA 76
TNN A+Y L+ G++ A G V+GDS+LV QV +D P +++ E
Sbjct: 1158 TNNTAEYEGLLAGIRAAAALGVKRLIVKGDSELVANQV----HKDYKCSCPELSKYLAEV 1213
Query: 77 KRLKDKFLSI 86
++L+ +F I
Sbjct: 1214 RKLEKRFDGI 1223
>gi|20043049|gb|AAM08857.1|AC113339_3 Putative retroelement [Oryza sativa Japonica Group]
gi|21672047|gb|AAM74409.1|AC120497_9 Putative retroelement [Oryza sativa Japonica Group]
gi|31430964|gb|AAP52809.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 781
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 7/68 (10%)
Query: 19 TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMED---QTPGMAELCGE 75
TNN A+Y L+ G++ A G V+GDS+LV QV +D +P +++ E
Sbjct: 333 ATNNTAEYEGLLAGIRAATVLGVKRLIVKGDSELVANQV----HKDYKCSSPELSKYLAE 388
Query: 76 AKRLKDKF 83
++L+ +F
Sbjct: 389 VRKLEKRF 396
>gi|260447025|emb|CBG76438.1| OO_Ba0013J05-OO_Ba0033A15.25 [Oryza officinalis]
Length = 1625
Score = 35.8 bits (81), Expect = 3.5, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 19/71 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+ +Y L++GL+ A + G V
Sbjct: 1101 DGSLALPGAGAGVTMTLPSGDVLRYLVRLDFRATNNMTEYEGLLVGLRVAAEMGIHRLLV 1160
Query: 47 RGDSKLVHMQV 57
GDS+LV QV
Sbjct: 1161 LGDSQLVVNQV 1171
>gi|288573975|ref|ZP_06392332.1| ribonuclease H [Dethiosulfovibrio peptidovorans DSM 11002]
gi|288569716|gb|EFC91273.1| ribonuclease H [Dethiosulfovibrio peptidovorans DSM 11002]
Length = 195
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 5 DDGSLIYN-HNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC-CWLM 62
D+ L++ +G TNN A+Y + IL LK L++G + GDSKLV Q+ W +
Sbjct: 27 DENRLVWRGAEPLGERTNNEAEYMAAILVLKEVLRRGLSEIELCGDSKLVINQLSGAWKI 86
Query: 63 EDQTPGMAELCGEAKRLKDKFLSI 86
++ P + L E K L K LS+
Sbjct: 87 KE--PRLGVLAEEFKALA-KGLSV 107
>gi|451944722|ref|YP_007465358.1| bifunctional RNase H/acid phosphatase [Corynebacterium halotolerans
YIM 70093 = DSM 44683]
gi|451904109|gb|AGF72996.1| bifunctional RNase H/acid phosphatase [Corynebacterium halotolerans
YIM 70093 = DSM 44683]
Length = 407
Score = 35.8 bits (81), Expect = 3.6, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
TNNVA+Y ++ GL+ A + G + DSKLV Q+ W ++ P M +L EA++
Sbjct: 44 TNNVAEYHGMLRGLEAARELGASEVEIYLDSKLVVEQMSGRWKIKH--PDMQKLAIEARK 101
Query: 79 LKDKFLSI 86
+ F S+
Sbjct: 102 IMSTFDSV 109
>gi|302551031|ref|ZP_07303373.1| bifunctional RNase H/acid phosphatase [Streptomyces
viridochromogenes DSM 40736]
gi|302468649|gb|EFL31742.1| bifunctional RNase H/acid phosphatase [Streptomyces
viridochromogenes DSM 40736]
Length = 559
Score = 35.8 bits (81), Expect = 3.6, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 16 VGITTNNVAKYGSLILGLKYALQ-KGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELC 73
+G+ TNNVA+Y L+ GL+ A + VR DSKLV Q+ W ++ P M L
Sbjct: 41 IGVATNNVAEYRGLLAGLRAAHELDPDATVHVRMDSKLVIEQMSGRWKIKH--PDMKPLA 98
Query: 74 GEAKRL 79
EA R+
Sbjct: 99 AEAARV 104
>gi|22165089|gb|AAM93706.1| putative gag-pol precursor [Oryza sativa Japonica Group]
gi|31432507|gb|AAP54129.1| transposon protein, putative, unclassified [Oryza sativa Japonica
Group]
Length = 816
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 11/69 (15%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV-----CCWLMEDQTPGMAELCG 74
TNN A+Y L+ G++ A G V+GDS+LV QV C P +++
Sbjct: 428 TNNTAEYEGLLAGIRAAAALGVKRLIVKGDSELVANQVHKDYKCS------NPELSKYLA 481
Query: 75 EAKRLKDKF 83
E ++L+ +F
Sbjct: 482 EVRKLEKRF 490
>gi|315426222|dbj|BAJ47865.1| ribonuclease HI [Candidatus Caldiarchaeum subterraneum]
gi|315427897|dbj|BAJ49489.1| ribonuclease HI [Candidatus Caldiarchaeum subterraneum]
gi|343485053|dbj|BAJ50707.1| ribonuclease HI [Candidatus Caldiarchaeum subterraneum]
Length = 134
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 26/42 (61%)
Query: 16 VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
+G+ TNN A+Y +LI L+ ALQ G V DS+L+ QV
Sbjct: 39 IGVATNNQAEYHALIKSLEKALQLGVKKAHVYSDSELLVKQV 80
>gi|108709708|gb|ABF97503.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1172
Score = 35.8 bits (81), Expect = 3.7, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 19 TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLV 53
TTNN A+Y +++LGL+ A G +R DSKLV
Sbjct: 1045 TTNNAAEYEAILLGLRKAKALGIRRLLIRTDSKLV 1079
>gi|50838920|gb|AAT81681.1| putative retrotransposon protein [Oryza sativa Japonica Group]
Length = 1168
Score = 35.8 bits (81), Expect = 3.7, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 19 TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLV 53
TTNN A+Y +++LGL+ A G +R DSKLV
Sbjct: 1041 TTNNAAEYEAILLGLRKAKALGIRRLLIRTDSKLV 1075
>gi|15217240|gb|AAK92584.1|AC074354_18 Putative retroelement [Oryza sativa Japonica Group]
Length = 1705
Score = 35.8 bits (81), Expect = 3.7, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 19 TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLV 53
TTNN A+Y +++LGL+ A G +R DSKLV
Sbjct: 1279 TTNNAAEYEAILLGLRKAKALGIRRLLIRTDSKLV 1313
>gi|77556346|gb|ABA99142.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1342
Score = 35.8 bits (81), Expect = 3.7, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 19 TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLV 53
TTNN A+Y +++LGL+ A G +R DSKLV
Sbjct: 1142 TTNNAAEYKAILLGLRKAKALGVRRLLIRTDSKLV 1176
>gi|77556325|gb|ABA99121.1| transposon protein, putative, unclassified [Oryza sativa Japonica
Group]
Length = 1681
Score = 35.8 bits (81), Expect = 3.7, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMED---QTPGMAELCGEA 76
TNN A+Y L+ G++ A G V+GDS+LV QV +D P +++ E
Sbjct: 1244 TNNTAEYEGLLAGIRAATALGAKRLIVKGDSELVANQV----HKDYKCSNPELSKYLAEV 1299
Query: 77 KRLKDKFLSI 86
++L+ +F I
Sbjct: 1300 RKLEKRFDGI 1309
>gi|255324866|ref|ZP_05365975.1| phosphoglycerate mutase [Corynebacterium tuberculostearicum SK141]
gi|255298043|gb|EET77351.1| phosphoglycerate mutase [Corynebacterium tuberculostearicum SK141]
Length = 376
Score = 35.8 bits (81), Expect = 3.7, Method: Composition-based stats.
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 14/94 (14%)
Query: 4 ADDGSLIYNHNGVGI-----------TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKL 52
A G++IY+ +G I +TNNVA+Y L+ GL+ A + G DSKL
Sbjct: 18 AGSGTVIYDGSGQRILREIVYVVGTKSTNNVAEYNGLLRGLEAATEMGATEVEFHMDSKL 77
Query: 53 VHMQVCC-WLMEDQTPGMAELCGEAKRLKDKFLS 85
V Q+ W ++ P M +L A+ + F S
Sbjct: 78 VVEQINGRWKIKH--PDMQKLALRAREYINGFSS 109
>gi|311741456|ref|ZP_07715280.1| phosphoglycerate mutase [Corynebacterium pseudogenitalium ATCC
33035]
gi|311303626|gb|EFQ79705.1| phosphoglycerate mutase [Corynebacterium pseudogenitalium ATCC
33035]
Length = 376
Score = 35.8 bits (81), Expect = 3.7, Method: Composition-based stats.
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 14/94 (14%)
Query: 4 ADDGSLIYNHNGVGI-----------TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKL 52
A G++IY+ +G I +TNNVA+Y L+ GL+ A + G DSKL
Sbjct: 18 AGSGTVIYDGSGQRILREIVYVVGTKSTNNVAEYNGLLRGLEAATEMGATEVEFHMDSKL 77
Query: 53 VHMQVCC-WLMEDQTPGMAELCGEAKRLKDKFLS 85
V Q+ W ++ P M +L A+ + F S
Sbjct: 78 VVEQINGRWKIKH--PDMQKLALRAREYINGFSS 109
>gi|147776984|emb|CAN70076.1| hypothetical protein VITISV_009398 [Vitis vinifera]
Length = 309
Score = 35.8 bits (81), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 21 NNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMEDQTPGMAELCGEAKRLK 80
NN+A+Y +LI+ L+ ++ N + GDSKLV Q+ L E ++ + A +L
Sbjct: 194 NNIAEYKALIIELQMVIEMKITNLEICGDSKLVINQLLA-LYEVKSDDLVPYFQYATQLM 252
Query: 81 DKFLSI 86
+KF I
Sbjct: 253 EKFERI 258
>gi|29832420|ref|NP_827054.1| bifunctional RNase H/acid phosphatase [Streptomyces avermitilis
MA-4680]
gi|29609539|dbj|BAC73589.1| putative bifunctional protein [Streptomyces avermitilis MA-4680]
Length = 438
Score = 35.8 bits (81), Expect = 3.8, Method: Composition-based stats.
Identities = 27/63 (42%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 16 VGITTNNVAKYGSLILGLKYALQ-KGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELC 73
+G+ TNNVA+Y L+ GLK A RVR DSKLV Q+ W ++ P M L
Sbjct: 42 IGVATNNVAEYRGLLAGLKAARALDPAARIRVRMDSKLVVEQMSGRWKIKH--PDMKPLA 99
Query: 74 GEA 76
EA
Sbjct: 100 REA 102
>gi|38346966|emb|CAE02263.2| OSJNBb0049I21.2 [Oryza sativa Japonica Group]
Length = 1843
Score = 35.8 bits (81), Expect = 3.8, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV
Sbjct: 1443 SHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQV 1480
>gi|22725926|gb|AAN04936.1| Putative retroelement [Oryza sativa Japonica Group]
Length = 1479
Score = 35.8 bits (81), Expect = 3.8, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV
Sbjct: 1427 SHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQV 1464
>gi|108756881|ref|YP_633866.1| ribonuclease H [Myxococcus xanthus DK 1622]
gi|108460761|gb|ABF85946.1| ribonuclease H [Myxococcus xanthus DK 1622]
Length = 147
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 16 VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMEDQTPGMAELCGE 75
+G TNN A+Y L+LGLK+A G V DS+L+ Q+ + ++P + L E
Sbjct: 53 LGHQTNNCAEYMGLLLGLKHAQSLGAREVEVFADSELLIRQLGGRY-QVKSPTLKPLYEE 111
Query: 76 AKRLKDKFLSI 86
A++L F +
Sbjct: 112 ARKLLKGFTKV 122
>gi|21220768|ref|NP_626547.1| bifunctional RNase H/acid phosphatase [Streptomyces coelicolor
A3(2)]
gi|7619754|emb|CAB88177.1| putative bifunctional protein (ribonuclease H/phosphoglycerate
mutase) [Streptomyces coelicolor A3(2)]
Length = 497
Score = 35.4 bits (80), Expect = 3.9, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 16 VGITTNNVAKYGSLILGLKYALQ-KGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELC 73
+G+ TNNVA+Y L+ GL+ A + VR DSKLV Q+ W ++ P M L
Sbjct: 49 LGVVTNNVAEYRGLLAGLRAAAELDPDATVHVRMDSKLVVEQMSGRWKIKH--PDMKPLA 106
Query: 74 GEAKRL 79
EA R+
Sbjct: 107 AEAARV 112
>gi|18312884|ref|NP_559551.1| hypothetical protein PAE1792 [Pyrobaculum aerophilum str. IM2]
gi|18160375|gb|AAL63733.1| hypothetical protein PAE1792 [Pyrobaculum aerophilum str. IM2]
Length = 191
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 5 DDGSLIYNHNGV-----GITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
D+G Y GV TNN A+Y L+ L++AL GF GDS+LV Q+
Sbjct: 29 DEGREAYGEGGVVCFGERWCTNNYAEYAGLVKALEWALAGGFDCVSAFGDSQLVVRQM 86
>gi|147772901|emb|CAN69074.1| hypothetical protein VITISV_007224 [Vitis vinifera]
Length = 1079
Score = 35.4 bits (80), Expect = 3.9, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLV--HMQ 56
TNN+ +Y + ILGL+ AL+ G V GDS +V H+Q
Sbjct: 781 TNNIVEYETYILGLETALELGIRQMEVFGDSNMVLRHIQ 819
>gi|399575426|ref|ZP_10769184.1| hypothetical protein HSB1_12230 [Halogranum salarium B-1]
gi|399239694|gb|EJN60620.1| hypothetical protein HSB1_12230 [Halogranum salarium B-1]
Length = 198
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 6 DGSLIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV-CCWLMED 64
DG + +G TTNN A+Y +L+ L+ A + G +RGDS+LV QV W D
Sbjct: 95 DGIVAEGSERIGQTTNNRAEYAALLKALEAASEYGLKEIDLRGDSQLVVKQVRGEWNTND 154
Query: 65 QTPGMAELCGEAKRL 79
PG+ E EA+ L
Sbjct: 155 --PGLREKRVEAREL 167
>gi|62734328|gb|AAX96437.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
gi|77550054|gb|ABA92851.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 425
Score = 35.4 bits (80), Expect = 4.0, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMED---QTPGMAELCGEA 76
TNN A+Y L+ G++ A G V+GDS+LV QV +D P +++ E
Sbjct: 37 TNNTAEYEGLLAGIRAAAALGAKRLIVKGDSELVANQV----HKDYKCSNPELSKYLAEV 92
Query: 77 KRLKDKFLSI 86
++L+ +F I
Sbjct: 93 RKLEKRFDGI 102
>gi|256395024|ref|YP_003116588.1| bifunctional RNase H/acid phosphatase [Catenulispora acidiphila DSM
44928]
gi|256361250|gb|ACU74747.1| Phosphoglycerate mutase [Catenulispora acidiphila DSM 44928]
Length = 427
Score = 35.4 bits (80), Expect = 4.1, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
Query: 15 GVGITTNNVAKYGSLILGLK--YALQKGFFNFRVRGDSKLVHMQVC-CWLMEDQTPGMAE 71
G+G+ TNNVA+Y LI GL+ YAL VR DSKL Q+ W + + P + +
Sbjct: 41 GLGVVTNNVAEYRGLIAGLRAAYALDP-HAEVEVRMDSKLAVQQMSGVW--QVKHPDIKQ 97
Query: 72 LCGEAK 77
L +A+
Sbjct: 98 LAVQAR 103
>gi|146304992|ref|YP_001192308.1| ribonuclease H [Metallosphaera sedula DSM 5348]
gi|145703242|gb|ABP96384.1| ribonuclease H [Metallosphaera sedula DSM 5348]
Length = 148
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 24/39 (61%)
Query: 19 TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
+TNNVA+Y LI LK L G RV GDS+LV Q+
Sbjct: 47 STNNVAEYTGLICLLKKMLTLGVTEARVEGDSQLVIRQL 85
>gi|379735432|ref|YP_005328938.1| hypothetical protein BLASA_1993 [Blastococcus saxobsidens DD2]
gi|378783239|emb|CCG02907.1| conserved protein of unknown function [Blastococcus saxobsidens
DD2]
Length = 364
Score = 35.4 bits (80), Expect = 4.1, Method: Composition-based stats.
Identities = 22/43 (51%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 16 VGITTNNVAKYGSLILGLKYALQ-KGFFNFRVRGDSKLVHMQV 57
VG TNNVA+YG L+ GL+ AL VR DSKLV Q+
Sbjct: 42 VGRATNNVAEYGGLVAGLQAALDLDPSAQVEVRMDSKLVVEQM 84
>gi|108705932|gb|ABF93727.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1053
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV
Sbjct: 715 SHNVAEYEALLHGLRIAISLGIRRLIVRGDSQLVVNQV 752
>gi|13486715|dbj|BAB39950.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1579
Score = 35.4 bits (80), Expect = 4.1, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 9/56 (16%)
Query: 7 GSLIYNHNGVGI---------TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLV 53
+++++ NGV I TTNN A+Y + +LGL+ A G +R DSKLV
Sbjct: 1035 AAVLFSPNGVPIRYAARLQFDTTNNAAEYEAFLLGLRKAKALGVRRLLIRIDSKLV 1090
>gi|118396396|ref|XP_001030538.1| RNase H family protein [Tetrahymena thermophila]
gi|89284845|gb|EAR82875.1| RNase H family protein [Tetrahymena thermophila SB210]
Length = 693
Score = 35.4 bits (80), Expect = 4.2, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 9/72 (12%)
Query: 16 VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC----CWLMEDQTPGMAE 71
VG TNN ++Y +LI GL +L+ G ++GDS+L+ Q+ C D E
Sbjct: 597 VGTKTNNQSEYLALIYGLYVSLKIGIQKLFIQGDSQLIIYQMTGKYNC--SNDNIKKYYE 654
Query: 72 LCGEAKRLKDKF 83
LC K L+ KF
Sbjct: 655 LC---KMLQSKF 663
>gi|365175798|ref|ZP_09363222.1| hypothetical protein HMPREF1006_01167 [Synergistes sp. 3_1_syn1]
gi|363612051|gb|EHL63609.1| hypothetical protein HMPREF1006_01167 [Synergistes sp. 3_1_syn1]
Length = 130
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 26/43 (60%)
Query: 16 VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC 58
+G TNN A+Y + IL L A ++G +V GDSKLV Q+
Sbjct: 37 LGKKTNNEAEYNAAILLLTAAKERGVKELKVYGDSKLVVCQLS 79
>gi|147804834|emb|CAN78057.1| hypothetical protein VITISV_022118 [Vitis vinifera]
Length = 1504
Score = 35.4 bits (80), Expect = 4.2, Method: Composition-based stats.
Identities = 18/35 (51%), Positives = 24/35 (68%), Gaps = 4/35 (11%)
Query: 10 IYNHNGVGI----TTNNVAKYGSLILGLKYALQKG 40
I NH+G GI TTNN+ +Y + ILGL+ AL+ G
Sbjct: 1072 IANHSGFGIDQHPTTNNIVEYEACILGLETALELG 1106
>gi|62732690|gb|AAX94809.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
gi|77549650|gb|ABA92447.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 575
Score = 35.4 bits (80), Expect = 4.2, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 19 TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLV 53
TTNNVA+Y +++LGL+ A G ++ DSKLV
Sbjct: 268 TTNNVAEYEAILLGLRKAKALGIRRLLIQTDSKLV 302
>gi|404446830|ref|ZP_11011927.1| bifunctional RNase H/acid phosphatase [Mycobacterium vaccae ATCC
25954]
gi|403649864|gb|EJZ05169.1| bifunctional RNase H/acid phosphatase [Mycobacterium vaccae ATCC
25954]
Length = 359
Score = 35.4 bits (80), Expect = 4.2, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 4 ADDGSLIYNH-NGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WL 61
AD G+++ +G TNNVA+Y LI GL A G V DSKLV Q+ W
Sbjct: 27 ADRGAVLAEAAESIGRATNNVAEYRGLIAGLGAADDLGATEVEVYMDSKLVVEQMSGRWR 86
Query: 62 MEDQTPGMAELCGEAKRLKDKF 83
++ P +A L +A L +F
Sbjct: 87 VKH--PDLAPLHQQANDLARRF 106
>gi|38347558|emb|CAD39384.2| OSJNBb0016B03.14 [Oryza sativa Japonica Group]
Length = 1323
Score = 35.4 bits (80), Expect = 4.3, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 19 TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLV 53
TTNN A+Y +++LGL+ A G +R DSKLV
Sbjct: 839 TTNNAAEYEAILLGLRRAKALGVRRLLIRTDSKLV 873
>gi|271968069|ref|YP_003342265.1| fructose-2 6-bisphosphatase-like protein [Streptosporangium roseum
DSM 43021]
gi|270511244|gb|ACZ89522.1| Fructose-2 6-bisphosphatase-like protein [Streptosporangium roseum
DSM 43021]
Length = 452
Score = 35.4 bits (80), Expect = 4.3, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 4 ADDGSLIYNHNGVGITTNNVAKYGSLILGLK--YALQKGFFNFRVRGDSKLVHMQVCC-W 60
AD L+ +G TNNVA+Y LI GL+ AL VR DSKLV Q+ W
Sbjct: 29 ADGQVLVETAEAIGAQTNNVAEYRGLIAGLQSLLALAGDGAVVEVRMDSKLVIEQMAGRW 88
Query: 61 LMEDQ--TPGMAELCGEAKRLK 80
++++ P E A+RL+
Sbjct: 89 KIKNEGLRPLALEAGALARRLR 110
>gi|116309689|emb|CAH66737.1| H0404F02.13 [Oryza sativa Indica Group]
Length = 749
Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G V GDS+LV QV W D M E ++
Sbjct: 384 SHNVAEYEALLHGLRIAISLGIRRLIVCGDSQLVVNQVMKEWSCLDD--NMTAYRQEVRK 441
Query: 79 LKDKF 83
L+DKF
Sbjct: 442 LEDKF 446
>gi|108708549|gb|ABF96344.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1841
Score = 35.4 bits (80), Expect = 4.4, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMEDQTPGM 69
TNN+A+Y L+ GL+ A G V GDS+LV QV C ME G+
Sbjct: 1318 TNNMAEYEGLLAGLRVAAGLGIRRLLVLGDSQLVVNQVRC--MERHFDGI 1365
>gi|37991909|gb|AAR06355.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1809
Score = 35.4 bits (80), Expect = 4.4, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMEDQTPGM 69
TNN+A+Y L+ GL+ A G V GDS+LV QV C ME G+
Sbjct: 1307 TNNMAEYEGLLAGLRVAAGLGIRRLLVLGDSQLVVNQVRC--MERHFDGI 1354
>gi|119873226|ref|YP_931233.1| ribonuclease H [Pyrobaculum islandicum DSM 4184]
gi|119674634|gb|ABL88890.1| ribonuclease H [Pyrobaculum islandicum DSM 4184]
Length = 187
Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 6 DGSLIYNHNGVGIT-----TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
+G +Y GV TNN A+Y LI GL++AL G V GDS+LV Q+
Sbjct: 29 NGEEVYGEGGVVCAGERWCTNNYAEYMGLIKGLEWALAAGESCLNVYGDSQLVVRQM 85
>gi|108708719|gb|ABF96514.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 636
Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV
Sbjct: 299 SHNVAEYEALLHGLRIAISLGIRRLIVRGDSQLVVNQV 336
>gi|359497336|ref|XP_003635486.1| PREDICTED: uncharacterized protein LOC100853954, partial [Vitis
vinifera]
Length = 1549
Score = 35.4 bits (80), Expect = 4.4, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TNN+ +Y + ILGL+ A + G V GDS LV Q+
Sbjct: 1128 TNNIVEYEACILGLETAFELGIRQMEVFGDSNLVLRQI 1165
>gi|31432029|gb|AAP53721.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1260
Score = 35.4 bits (80), Expect = 4.5, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 19 TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLV 53
TTNN A+Y +++LGL+ A G +R DSKLV
Sbjct: 903 TTNNAAEYEAILLGLRKAKALGVRRLLIRTDSKLV 937
>gi|38346742|emb|CAD40752.2| OSJNBa0081G05.5 [Oryza sativa Japonica Group]
Length = 926
Score = 35.4 bits (80), Expect = 4.5, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 19 TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLV 53
TTNN A+Y +++LGL+ A G +R DSKLV
Sbjct: 471 TTNNAAEYEAILLGLRKAKALGVRRLLIRTDSKLV 505
>gi|297612186|ref|NP_001068285.2| Os11g0617500 [Oryza sativa Japonica Group]
gi|255680267|dbj|BAF28648.2| Os11g0617500, partial [Oryza sativa Japonica Group]
Length = 627
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 19 TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLV 53
TTNN A+Y +++LGL+ A G +R DSKLV
Sbjct: 530 TTNNAAEYEAILLGLRKAKALGVRRLLIRTDSKLV 564
>gi|116309216|emb|CAH66308.1| OSIGBa0135K14.5 [Oryza sativa Indica Group]
gi|116309233|emb|CAH66323.1| OSIGBa0150M16.6 [Oryza sativa Indica Group]
Length = 926
Score = 35.4 bits (80), Expect = 4.5, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 19 TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLV 53
TTNN A+Y +++LGL+ A G +R DSKLV
Sbjct: 471 TTNNAAEYEAILLGLRKAKALGVRRLLIRTDSKLV 505
>gi|118380541|ref|XP_001023434.1| RNase H family protein [Tetrahymena thermophila]
gi|89305201|gb|EAS03189.1| RNase H family protein [Tetrahymena thermophila SB210]
Length = 288
Score = 35.4 bits (80), Expect = 4.5, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 17 GITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV-CCWLMEDQTPGMAELCGE 75
G TNN A+Y +L+ GLK +L G V GDS+L+ Q+ + ++D+ + GE
Sbjct: 178 GFKTNNQAEYLALLYGLKSSLSLGIEFLNVYGDSQLIINQMNNLYRVKDRN--LILYNGE 235
Query: 76 AKRLKDKF 83
K+L+ +F
Sbjct: 236 CKQLRTQF 243
>gi|116310837|emb|CAH67624.1| OSIGBa0140J09.5 [Oryza sativa Indica Group]
Length = 1413
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV
Sbjct: 1217 SHNVAEYEALLHGLRIAISLGIRRLIVRGDSQLVVNQV 1254
>gi|108864582|gb|ABG22552.1| retrotransposon protein, putative, unclassified, expressed [Oryza
sativa Japonica Group]
Length = 612
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 23/69 (33%)
Query: 6 DGSLIYNHNGVGI---------------------TTNNVAKYGSLILGLKYALQKGFFNF 44
DGS ++H G GI TTNN A+Y +++LGL+ A G
Sbjct: 483 DGS--WSHKGAGIAAVLISPSGVPIRYAARLQFDTTNNAAEYEAILLGLRKAKALGVRRL 540
Query: 45 RVRGDSKLV 53
+R DSKLV
Sbjct: 541 LIRTDSKLV 549
>gi|32482939|emb|CAE02343.1| OSJNBb0072M01.4 [Oryza sativa Japonica Group]
gi|38345692|emb|CAE01914.2| OSJNBb0070J16.8 [Oryza sativa Japonica Group]
Length = 1413
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
++NVA+Y +L+ GL+ A+ G VRGDS+LV QV
Sbjct: 1217 SHNVAEYEALLHGLRIAISLGIRRLIVRGDSQLVVNQV 1254
>gi|356524006|ref|XP_003530624.1| PREDICTED: uncharacterized protein LOC100785887 [Glycine max]
Length = 2320
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
TNNVA+Y + ILG++ A+ N + GDS LV Q+ W E + PG+ AK
Sbjct: 1784 TNNVAEYEACILGIEKAIDLKIKNLDIYGDSALVINQIKGEW--ETRHPGLIPYKDYAKH 1841
Query: 79 L 79
L
Sbjct: 1842 L 1842
>gi|50511398|gb|AAT77321.1| putative polyprotein [Oryza sativa Japonica Group]
gi|54287583|gb|AAV31327.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1677
Score = 35.4 bits (80), Expect = 4.5, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 7/70 (10%)
Query: 17 GITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC-CW--LMEDQTPGMAELC 73
G +VA+Y +L+ GLK ++ G + VRGDS+LV QV W L ++ T +C
Sbjct: 1245 GFQALDVAEYEALLHGLKISISLGIRHLIVRGDSQLVVNQVMKVWSCLDDNMTAYRQGVC 1304
Query: 74 GEAKRLKDKF 83
+L+DKF
Sbjct: 1305 ----KLEDKF 1310
>gi|356561959|ref|XP_003549243.1| PREDICTED: uncharacterized protein LOC100795062 [Glycine max]
Length = 2323
Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
TNNVA+Y + ILG++ A+ N + GDS LV Q+ W E + PG+ AK
Sbjct: 1787 TNNVAEYEACILGIEKAIDLKIKNLDIYGDSALVINQIKGEW--ETRHPGLIPYKDYAKH 1844
Query: 79 L 79
L
Sbjct: 1845 L 1845
>gi|32489208|emb|CAE03827.1| OSJNBb0013J13.4 [Oryza sativa Japonica Group]
Length = 1291
Score = 35.4 bits (80), Expect = 4.6, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 19 TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLV 53
TTNN A+Y +++LGL+ A G +R DSKLV
Sbjct: 873 TTNNAAEYKAVLLGLRKAKALGVRRLLIRTDSKLV 907
>gi|147867434|emb|CAN81175.1| hypothetical protein VITISV_000818 [Vitis vinifera]
Length = 1118
Score = 35.4 bits (80), Expect = 4.6, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 10 IYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
IY H + TNN+ +Y + I L+ AL+ G V GDS LV Q+
Sbjct: 1002 IYQH----LATNNIVEYEACIFNLETALELGIRQMEVFGDSNLVLKQI 1045
>gi|433631347|ref|YP_007264975.1| Multifunctional protein with RNase H, alpha-ribazole phosphatase,
and acid phosphatase activities [Mycobacterium canettii
CIPT 140070010]
gi|433635296|ref|YP_007268923.1| Multifunctional protein with RNase H, alpha-ribazole phosphatase,
and acid phosphatase activities [Mycobacterium canettii
CIPT 140070017]
gi|432162940|emb|CCK60332.1| Multifunctional protein with RNase H, alpha-ribazole phosphatase,
and acid phosphatase activities [Mycobacterium canettii
CIPT 140070010]
gi|432166889|emb|CCK64392.1| Multifunctional protein with RNase H, alpha-ribazole phosphatase,
and acid phosphatase activities [Mycobacterium canettii
CIPT 140070017]
Length = 364
Score = 35.4 bits (80), Expect = 4.7, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 9 LIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTP 67
L + +G TNNVA+Y LI GL A++ G V DSKLV Q+ W ++ P
Sbjct: 33 LAESKQAIGRATNNVAEYRGLIAGLDDAVKLGATEAAVLMDSKLVVEQMSGRWKVKH--P 90
Query: 68 GMAELCGEAKRLKDKFLSI 86
+ +L +A+ L +F I
Sbjct: 91 DLLKLYVQAQALASQFRRI 109
>gi|289762391|ref|ZP_06521769.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
gi|289709897|gb|EFD73913.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
Length = 363
Score = 35.4 bits (80), Expect = 4.7, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 9 LIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTP 67
L + +G TNNVA+Y LI GL A++ G V DSKLV Q+ W ++ P
Sbjct: 32 LAESKQAIGRATNNVAEYRGLIAGLDDAVKLGATEAAVLMDSKLVVEQMSGRWKVKH--P 89
Query: 68 GMAELCGEAKRLKDKFLSI 86
+ +L +A+ L +F I
Sbjct: 90 DLLKLYVQAQALASQFRRI 108
>gi|289758350|ref|ZP_06517728.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
T85]
gi|289713914|gb|EFD77926.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
T85]
Length = 340
Score = 35.4 bits (80), Expect = 4.7, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 9 LIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTP 67
L + +G TNNVA+Y LI GL A++ G V DSKLV Q+ W ++ P
Sbjct: 33 LAESKQAIGRATNNVAEYRGLIAGLDDAVKLGATEAAVLMDSKLVVEQMSGRWKVKH--P 90
Query: 68 GMAELCGEAKRLKDKFLSI 86
+ +L +A+ L +F I
Sbjct: 91 DLLKLYVQAQALASQFRRI 109
>gi|15609365|ref|NP_216744.1| Multifunctional protein. Has RNASE H,alpha-ribazole phosphatase,
and acid phosphatase activities [Mycobacterium
tuberculosis H37Rv]
gi|15841722|ref|NP_336759.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
CDC1551]
gi|31793409|ref|NP_855902.1| bifunctional RNase H/acid phosphatase [Mycobacterium bovis
AF2122/97]
gi|121638111|ref|YP_978335.1| bifunctional RNase H/acid phosphatase [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|148662048|ref|YP_001283571.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
H37Ra]
gi|148823436|ref|YP_001288190.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
F11]
gi|167969373|ref|ZP_02551650.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
H37Ra]
gi|224990605|ref|YP_002645292.1| bifunctional RNase H/acid phosphatase [Mycobacterium bovis BCG str.
Tokyo 172]
gi|253798706|ref|YP_003031707.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
KZN 1435]
gi|254232381|ref|ZP_04925708.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
gi|254365024|ref|ZP_04981070.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
Haarlem]
gi|254551269|ref|ZP_05141716.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
gi|289443737|ref|ZP_06433481.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
gi|289447858|ref|ZP_06437602.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
CPHL_A]
gi|289570348|ref|ZP_06450575.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
gi|289574915|ref|ZP_06455142.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
K85]
gi|289745502|ref|ZP_06504880.1| phosphoglycerate mutase [Mycobacterium tuberculosis 02_1987]
gi|289750825|ref|ZP_06510203.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
gi|289754337|ref|ZP_06513715.1| phosphoglycerate mutase [Mycobacterium tuberculosis EAS054]
gi|294993616|ref|ZP_06799307.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
210]
gi|297634820|ref|ZP_06952600.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
KZN 4207]
gi|297731811|ref|ZP_06960929.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
KZN R506]
gi|298525721|ref|ZP_07013130.1| conserved hypothetical protein [Mycobacterium tuberculosis
94_M4241A]
gi|306776483|ref|ZP_07414820.1| hypothetical protein TMAG_00419 [Mycobacterium tuberculosis
SUMu001]
gi|306789374|ref|ZP_07427696.1| hypothetical protein TMDG_00708 [Mycobacterium tuberculosis
SUMu004]
gi|306793697|ref|ZP_07431999.1| hypothetical protein TMEG_02598 [Mycobacterium tuberculosis
SUMu005]
gi|306798089|ref|ZP_07436391.1| hypothetical protein TMFG_01192 [Mycobacterium tuberculosis
SUMu006]
gi|306808541|ref|ZP_07445209.1| hypothetical protein TMGG_00788 [Mycobacterium tuberculosis
SUMu007]
gi|306972595|ref|ZP_07485256.1| hypothetical protein TMJG_00492 [Mycobacterium tuberculosis
SUMu010]
gi|307084891|ref|ZP_07494004.1| hypothetical protein TMLG_02717 [Mycobacterium tuberculosis
SUMu012]
gi|313659145|ref|ZP_07816025.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
KZN V2475]
gi|339632255|ref|YP_004723897.1| hypothetical protein MAF_22400 [Mycobacterium africanum GM041182]
gi|340627233|ref|YP_004745685.1| hypothetical protein MCAN_22511 [Mycobacterium canettii CIPT
140010059]
gi|375295964|ref|YP_005100231.1| hypothetical protein TBSG_01763 [Mycobacterium tuberculosis KZN
4207]
gi|378771961|ref|YP_005171694.1| hypothetical protein BCGMEX_2234c [Mycobacterium bovis BCG str.
Mexico]
gi|383308027|ref|YP_005360838.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
RGTB327]
gi|385995190|ref|YP_005913488.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
CCDC5079]
gi|385999004|ref|YP_005917303.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
CTRI-2]
gi|392386871|ref|YP_005308500.1| unnamed protein product [Mycobacterium tuberculosis UT205]
gi|392432175|ref|YP_006473219.1| hypothetical protein TBXG_001734 [Mycobacterium tuberculosis KZN
605]
gi|397674114|ref|YP_006515649.1| hypothetical protein RVBD_2228c [Mycobacterium tuberculosis H37Rv]
gi|422813262|ref|ZP_16861637.1| hypothetical protein TMMG_01511 [Mycobacterium tuberculosis
CDC1551A]
gi|424804566|ref|ZP_18229997.1| hypothetical protein TBPG_01727 [Mycobacterium tuberculosis W-148]
gi|424947911|ref|ZP_18363607.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
NCGM2209]
gi|433627347|ref|YP_007260976.1| Multifunctional protein with RNase H, alpha-ribazole phosphatase,
and acid phosphatase activities [Mycobacterium canettii
CIPT 140060008]
gi|433642416|ref|YP_007288175.1| Multifunctional protein with RNase H, alpha-ribazole phosphatase,
and acid phosphatase activities [Mycobacterium canettii
CIPT 140070008]
gi|449064287|ref|YP_007431370.1| bifunctional RNase H/acid phosphatase [Mycobacterium bovis BCG str.
Korea 1168P]
gi|54040461|sp|P64956.1|Y2253_MYCBO RecName: Full=Uncharacterized protein Mb2253c
gi|54042871|sp|P64955.1|Y2228_MYCTU RecName: Full=Uncharacterized protein Rv2228c/MT2287
gi|13881979|gb|AAK46573.1| phosphoglycerate mutase family protein [Mycobacterium tuberculosis
CDC1551]
gi|31619001|emb|CAD97106.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
gi|121493759|emb|CAL72234.1| Conserved hypothetical protein [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|124601440|gb|EAY60450.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
gi|134150538|gb|EBA42583.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
Haarlem]
gi|148506200|gb|ABQ74009.1| hypothetical protein MRA_2247 [Mycobacterium tuberculosis H37Ra]
gi|148721963|gb|ABR06588.1| conserved hypothetical protein [Mycobacterium tuberculosis F11]
gi|224773718|dbj|BAH26524.1| hypothetical protein JTY_2240 [Mycobacterium bovis BCG str. Tokyo
172]
gi|253320209|gb|ACT24812.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
1435]
gi|289416656|gb|EFD13896.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
gi|289420816|gb|EFD18017.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
CPHL_A]
gi|289539346|gb|EFD43924.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
K85]
gi|289544102|gb|EFD47750.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
gi|289686030|gb|EFD53518.1| phosphoglycerate mutase [Mycobacterium tuberculosis 02_1987]
gi|289691412|gb|EFD58841.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
gi|289694924|gb|EFD62353.1| phosphoglycerate mutase [Mycobacterium tuberculosis EAS054]
gi|298495515|gb|EFI30809.1| conserved hypothetical protein [Mycobacterium tuberculosis
94_M4241A]
gi|308215119|gb|EFO74518.1| hypothetical protein TMAG_00419 [Mycobacterium tuberculosis
SUMu001]
gi|308334063|gb|EFP22914.1| hypothetical protein TMDG_00708 [Mycobacterium tuberculosis
SUMu004]
gi|308337869|gb|EFP26720.1| hypothetical protein TMEG_02598 [Mycobacterium tuberculosis
SUMu005]
gi|308341630|gb|EFP30481.1| hypothetical protein TMFG_01192 [Mycobacterium tuberculosis
SUMu006]
gi|308345037|gb|EFP33888.1| hypothetical protein TMGG_00788 [Mycobacterium tuberculosis
SUMu007]
gi|308357998|gb|EFP46849.1| hypothetical protein TMJG_00492 [Mycobacterium tuberculosis
SUMu010]
gi|308365550|gb|EFP54401.1| hypothetical protein TMLG_02717 [Mycobacterium tuberculosis
SUMu012]
gi|323719131|gb|EGB28276.1| hypothetical protein TMMG_01511 [Mycobacterium tuberculosis
CDC1551A]
gi|326903842|gb|EGE50775.1| hypothetical protein TBPG_01727 [Mycobacterium tuberculosis W-148]
gi|328458469|gb|AEB03892.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
4207]
gi|339295144|gb|AEJ47255.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
CCDC5079]
gi|339331611|emb|CCC27310.1| conserved hypothetical protein [Mycobacterium africanum GM041182]
gi|340005423|emb|CCC44583.1| conserved hypothetical protein [Mycobacterium canettii CIPT
140010059]
gi|341602149|emb|CCC64823.1| conserved hypothetical protein [Mycobacterium bovis BCG str. Moreau
RDJ]
gi|344220051|gb|AEN00682.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
CTRI-2]
gi|356594282|gb|AET19511.1| Hypothetical protein BCGMEX_2234c [Mycobacterium bovis BCG str.
Mexico]
gi|358232426|dbj|GAA45918.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
NCGM2209]
gi|378545422|emb|CCE37699.1| unnamed protein product [Mycobacterium tuberculosis UT205]
gi|379028508|dbj|BAL66241.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
str. Erdman = ATCC 35801]
gi|380721980|gb|AFE17089.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
RGTB327]
gi|392053584|gb|AFM49142.1| hypothetical protein TBXG_001734 [Mycobacterium tuberculosis KZN
605]
gi|395139019|gb|AFN50178.1| hypothetical protein RVBD_2228c [Mycobacterium tuberculosis H37Rv]
gi|432154953|emb|CCK52195.1| Multifunctional protein with RNase H, alpha-ribazole phosphatase,
and acid phosphatase activities [Mycobacterium canettii
CIPT 140060008]
gi|432158964|emb|CCK56266.1| Multifunctional protein with RNase H, alpha-ribazole phosphatase,
and acid phosphatase activities [Mycobacterium canettii
CIPT 140070008]
gi|440581704|emb|CCG12107.1| hypothetical protein MT7199_2259 [Mycobacterium tuberculosis
7199-99]
gi|444895746|emb|CCP45006.1| Multifunctional protein. Has RNASE H,alpha-ribazole phosphatase,
and acid phosphatase activities [Mycobacterium
tuberculosis H37Rv]
gi|449032795|gb|AGE68222.1| bifunctional RNase H/acid phosphatase [Mycobacterium bovis BCG str.
Korea 1168P]
Length = 364
Score = 35.4 bits (80), Expect = 4.7, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 9 LIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTP 67
L + +G TNNVA+Y LI GL A++ G V DSKLV Q+ W ++ P
Sbjct: 33 LAESKQAIGRATNNVAEYRGLIAGLDDAVKLGATEAAVLMDSKLVVEQMSGRWKVKH--P 90
Query: 68 GMAELCGEAKRLKDKFLSI 86
+ +L +A+ L +F I
Sbjct: 91 DLLKLYVQAQALASQFRRI 109
>gi|356519007|ref|XP_003528166.1| PREDICTED: uncharacterized protein LOC100792217 [Glycine max]
Length = 2265
Score = 35.4 bits (80), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC-CWLMEDQTPGMAELCGEAKR 78
TNNVA+Y + ILG++ A+ N + GDS LV Q+ W E + PG+ AK
Sbjct: 1729 TNNVAEYEACILGIEKAIDLKIKNLDIYGDSALVINQIKGEW--ETRHPGLIPYKDYAKH 1786
Query: 79 L 79
L
Sbjct: 1787 L 1787
>gi|147767190|emb|CAN62666.1| hypothetical protein VITISV_040012 [Vitis vinifera]
Length = 984
Score = 35.4 bits (80), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 18 ITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
+TTNN+ +Y + ILGL+ A + G V GDS ++ Q+
Sbjct: 663 LTTNNIVEYEACILGLETAHELGIRQIEVFGDSNMILRQI 702
>gi|356573867|ref|XP_003555077.1| PREDICTED: uncharacterized protein LOC100811111 [Glycine max]
Length = 2265
Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
TNNVA+Y + ILG++ A+ N + GDS LV Q+ W E + PG+ AK
Sbjct: 1729 TNNVAEYEACILGIEKAIDLKIKNLDIYGDSALVINQIKGEW--ETRHPGLIPYKDYAKH 1786
Query: 79 L 79
L
Sbjct: 1787 L 1787
>gi|356498995|ref|XP_003518330.1| PREDICTED: uncharacterized protein LOC100818337 [Glycine max]
Length = 2323
Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
TNNVA+Y + ILG++ A+ N + GDS LV Q+ W E + PG+ AK
Sbjct: 1787 TNNVAEYEACILGIEKAIDLKIKNLDIYGDSALVINQIKGEW--ETRHPGLIPYKDYAKH 1844
Query: 79 L 79
L
Sbjct: 1845 L 1845
>gi|147785235|emb|CAN77389.1| hypothetical protein VITISV_013681 [Vitis vinifera]
Length = 2282
Score = 35.4 bits (80), Expect = 4.8, Method: Composition-based stats.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLV 53
TNN+ +Y + ILGL+ AL+ G V GDS LV
Sbjct: 1769 TNNIVEYEACILGLETALELGIRQMEVFGDSNLV 1802
>gi|356551968|ref|XP_003544344.1| PREDICTED: uncharacterized protein LOC100804218 [Glycine max]
Length = 2290
Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC-CWLMEDQTPGMAELCGEAKR 78
TNNVA+Y + ILG++ A+ N + GDS LV Q+ W E + PG+ AK
Sbjct: 1754 TNNVAEYEACILGIEKAIDLKIKNLDIYGDSALVINQIKGEW--ETRHPGLIPYKDYAKH 1811
Query: 79 L 79
L
Sbjct: 1812 L 1812
>gi|62733905|gb|AAX96014.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|62734500|gb|AAX96609.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77550188|gb|ABA92985.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 710
Score = 35.4 bits (80), Expect = 4.9, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 15 GVGITTNNVA----KYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGM 69
GV IT ++ +Y +LI GL+ A+ G VRGDS+LV QV W D M
Sbjct: 466 GVLITVRKLSHYFQEYEALIHGLRIAISLGIRRLIVRGDSQLVVNQVMKEWSSLDDN--M 523
Query: 70 AELCGEAKRLKDKF 83
E ++L+DKF
Sbjct: 524 TAYRQEVRKLEDKF 537
>gi|147854325|emb|CAN81302.1| hypothetical protein VITISV_024592 [Vitis vinifera]
Length = 1417
Score = 35.4 bits (80), Expect = 4.9, Method: Composition-based stats.
Identities = 17/33 (51%), Positives = 21/33 (63%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKL 52
TNN+ KY + ILGL+ AL+ G V GDS L
Sbjct: 916 TNNIVKYEACILGLETALELGIRQMEVFGDSNL 948
>gi|32488503|emb|CAE03255.1| OSJNBa0011J08.10 [Oryza sativa Japonica Group]
Length = 788
Score = 35.4 bits (80), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL+ A+ G V GDS+LV QV W D M E ++
Sbjct: 464 SHNVAEYEALLHGLRIAISLGIRRLIVCGDSQLVVNQVMKEWSCLDD--NMTAYRQEVRK 521
Query: 79 LKDKF 83
L+DKF
Sbjct: 522 LEDKF 526
>gi|77554819|gb|ABA97615.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 827
Score = 35.4 bits (80), Expect = 5.0, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 19 TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLV 53
TTNN A+Y +++LGL+ A G +R DSKLV
Sbjct: 759 TTNNAAEYEAILLGLRKAKALGVQRLLIRTDSKLV 793
>gi|315504418|ref|YP_004083305.1| phosphoglycerate mutase [Micromonospora sp. L5]
gi|315411037|gb|ADU09154.1| Phosphoglycerate mutase [Micromonospora sp. L5]
Length = 382
Score = 35.4 bits (80), Expect = 5.0, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 16 VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCG 74
+G TNNVA+Y LI GL+ A + G R DSKLV Q+C W ++ PG+ L
Sbjct: 43 IGTATNNVAEYRGLIAGLEAAAELGAAEVEARMDSKLVVEQMCGRWQIKH--PGLRPLAA 100
Query: 75 EAKRLKDKFLSI 86
+A L +F ++
Sbjct: 101 QAAGLVSRFAAV 112
>gi|28209457|gb|AAO37475.1| putative polyprotein [Oryza sativa Japonica Group]
gi|108709185|gb|ABF96980.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 240
Score = 35.4 bits (80), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 19 TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMEDQTPGMAELCGEAKR 78
TTNN A+Y +++LGLK G +R DSKLV V E + GM +
Sbjct: 113 TTNNAAEYKAILLGLKKVKALGVRRLLIRTDSKLVAGHVDK-SFEAKEEGMKRYLEVVRS 171
Query: 79 LKDKFLSI 86
++ +F+ I
Sbjct: 172 MEKRFVGI 179
>gi|77550813|gb|ABA93610.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 619
Score = 35.4 bits (80), Expect = 5.0, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
++NVA+Y +L+ GL+ A+ G +RGDS+LV QV
Sbjct: 567 SHNVAEYEALLHGLRIAISLGIRRLIIRGDSQLVVNQV 604
>gi|348678921|gb|EGZ18738.1| hypothetical protein PHYSODRAFT_381063 [Phytophthora sojae]
Length = 129
Score = 35.0 bits (79), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 23/38 (60%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TNN A+Y +LI GL AL G V+GDS L+ QV
Sbjct: 42 TNNTAEYIALISGLTGALHHGVRRLTVKGDSTLILEQV 79
>gi|50878488|gb|AAT85261.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1992
Score = 35.0 bits (79), Expect = 5.1, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 31/72 (43%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1406 DGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1465
Query: 47 RGDSKLVHMQVC 58
GD +LV QVC
Sbjct: 1466 LGDFQLVVNQVC 1477
>gi|374325633|ref|YP_005083830.1| ribonuclease H [Pyrobaculum sp. 1860]
gi|356640899|gb|AET31578.1| ribonuclease H [Pyrobaculum sp. 1860]
Length = 193
Score = 35.0 bits (79), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TNN A+Y +L+ L++AL G V GDS+LV QV
Sbjct: 54 TNNYAEYSALVRALEWALSNGVECVAVYGDSQLVVRQV 91
>gi|302869110|ref|YP_003837747.1| phosphoglycerate mutase [Micromonospora aurantiaca ATCC 27029]
gi|302571969|gb|ADL48171.1| Phosphoglycerate mutase [Micromonospora aurantiaca ATCC 27029]
Length = 377
Score = 35.0 bits (79), Expect = 5.1, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 16 VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCG 74
+G TNNVA+Y LI GL+ A + G R DSKLV Q+C W ++ PG+ L
Sbjct: 38 IGTATNNVAEYRGLIAGLEAAAELGAAEVEARMDSKLVVEQMCGRWQIKH--PGLRPLAA 95
Query: 75 EAKRLKDKFLSI 86
+A L +F ++
Sbjct: 96 QAAGLVSRFAAV 107
>gi|77550211|gb|ABA93008.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1280
Score = 35.0 bits (79), Expect = 5.2, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 7/72 (9%)
Query: 18 ITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMED---QTPGMAELCG 74
+ TNN A+Y L+ G++ A G V+GDS+LV QV +D +P +++
Sbjct: 1007 MVTNNTAEYEGLLAGIRAAAAVGVKRLIVKGDSELVVNQV----HKDYKCSSPELSKYLA 1062
Query: 75 EAKRLKDKFLSI 86
+ ++L+ +F I
Sbjct: 1063 DVRKLEKRFDGI 1074
>gi|359685859|ref|ZP_09255860.1| ribonuclease HI [Leptospira santarosai str. 2000030832]
gi|410450525|ref|ZP_11304562.1| ribonuclease HI [Leptospira sp. Fiocruz LV3954]
gi|418744997|ref|ZP_13301339.1| ribonuclease HI [Leptospira santarosai str. CBC379]
gi|418755779|ref|ZP_13311975.1| ribonuclease HI [Leptospira santarosai str. MOR084]
gi|421113370|ref|ZP_15573814.1| ribonuclease HI [Leptospira santarosai str. JET]
gi|422004282|ref|ZP_16351503.1| ribonuclease HI [Leptospira santarosai serovar Shermani str. LT
821]
gi|409963984|gb|EKO31884.1| ribonuclease HI [Leptospira santarosai str. MOR084]
gi|410015611|gb|EKO77706.1| ribonuclease HI [Leptospira sp. Fiocruz LV3954]
gi|410794000|gb|EKR91913.1| ribonuclease HI [Leptospira santarosai str. CBC379]
gi|410801144|gb|EKS07318.1| ribonuclease HI [Leptospira santarosai str. JET]
gi|417257082|gb|EKT86489.1| ribonuclease HI [Leptospira santarosai serovar Shermani str. LT
821]
gi|456874098|gb|EMF89423.1| ribonuclease HI [Leptospira santarosai str. ST188]
Length = 129
Score = 35.0 bits (79), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 28/42 (66%)
Query: 16 VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
+G TTNNVA++ SL GL+ +++ F + V DS+LV QV
Sbjct: 37 IGETTNNVAEWTSLKKGLEECVRRKFESVHVYMDSELVVRQV 78
>gi|356560472|ref|XP_003548516.1| PREDICTED: uncharacterized protein LOC100811554 [Glycine max]
Length = 1998
Score = 35.0 bits (79), Expect = 5.2, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCGEAKR 78
TNN+A+Y + ILG++ A+ N + GDS LV Q+ W E + PG+ A+R
Sbjct: 1800 TNNMAEYEACILGIEKAIDLKIKNLDIYGDSALVINQIKGEW--ETRHPGLIPYKDYARR 1857
Query: 79 L 79
L
Sbjct: 1858 L 1858
>gi|147832838|emb|CAN70673.1| hypothetical protein VITISV_007184 [Vitis vinifera]
Length = 706
Score = 35.0 bits (79), Expect = 5.2, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TNN+ +Y + ILGL+ L+ G V GDS LV Q+
Sbjct: 407 TNNIVEYEACILGLETTLELGIRQMEVFGDSNLVLRQI 444
>gi|147800365|emb|CAN62141.1| hypothetical protein VITISV_038647 [Vitis vinifera]
Length = 2068
Score = 35.0 bits (79), Expect = 5.2, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TNN+ +Y + ILGL+ AL+ G GDS LV Q+
Sbjct: 1564 TNNIVEYEACILGLETALELGIRQMEAFGDSNLVLRQI 1601
>gi|147781129|emb|CAN74046.1| hypothetical protein VITISV_026413 [Vitis vinifera]
Length = 956
Score = 35.0 bits (79), Expect = 5.2, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TNN+ +Y + ILGL+ L+ G V GDS LV Q+
Sbjct: 883 TNNIVEYEACILGLETTLELGIRQMEVFGDSNLVLRQI 920
>gi|147769225|emb|CAN71859.1| hypothetical protein VITISV_012970 [Vitis vinifera]
Length = 1710
Score = 35.0 bits (79), Expect = 5.2, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TNN+ +Y + ILGL+ L+ G V GDS LV Q+
Sbjct: 1248 TNNIVEYEACILGLETTLELGIRQMEVFGDSNLVLRQI 1285
>gi|38345002|emb|CAD40020.2| OSJNBa0052O21.5 [Oryza sativa Japonica Group]
Length = 1888
Score = 35.0 bits (79), Expect = 5.2, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 23/39 (58%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC 58
TNN+A+Y L+ GL+ A G V GDS LV QVC
Sbjct: 1335 TNNMAEYEGLLAGLRVAAGLGIRRLLVLGDSLLVVNQVC 1373
>gi|398337107|ref|ZP_10521812.1| ribonuclease HI [Leptospira kmetyi serovar Malaysia str.
Bejo-Iso9]
Length = 129
Score = 35.0 bits (79), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%)
Query: 16 VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC 58
+G TTNNVA++ +L GL+ +++ F + DS+LV QV
Sbjct: 37 IGETTNNVAEWTALKKGLEECIRRNFLSVHAHMDSELVVRQVT 79
>gi|147773597|emb|CAN63271.1| hypothetical protein VITISV_012338 [Vitis vinifera]
Length = 1136
Score = 35.0 bits (79), Expect = 5.3, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TNN+ +Y + ILGL+ L+ GF + V DS LV Q+
Sbjct: 799 TNNIVEYEACILGLETTLELGFRHMEVFDDSNLVLRQI 836
>gi|62732822|gb|AAX94941.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
gi|108864280|gb|ABA93006.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 555
Score = 35.0 bits (79), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMED---QTPGMAELCGEA 76
TNN A+Y L+ G++ A G ++GDS+LV QV +D +P +++ E
Sbjct: 126 TNNTAEYEGLLAGIRAAAALGVKRLIMKGDSELVANQV----HKDYKYSSPELSKYLAEV 181
Query: 77 KRLKDKF 83
++L+ +F
Sbjct: 182 RKLEKRF 188
>gi|77553900|gb|ABA96696.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1287
Score = 35.0 bits (79), Expect = 5.4, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 19 TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLV 53
TTNN A+Y ++++GLK A G +R DSKLV
Sbjct: 936 TTNNAAEYEAILVGLKKAKALGVRRLLIRTDSKLV 970
>gi|77551059|gb|ABA93856.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1427
Score = 35.0 bits (79), Expect = 5.5, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 19 TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLV 53
TTNN A+Y +++LGL+ A G +R DSKLV
Sbjct: 1045 TTNNAAEYEAVLLGLRKAKALGVRRLLIRTDSKLV 1079
>gi|77551114|gb|ABA93911.1| retrotransposon protein, putative, Ty3-gypsy subclass, expressed
[Oryza sativa Japonica Group]
Length = 1361
Score = 35.0 bits (79), Expect = 5.5, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 19 TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLV 53
TTNN A+Y +++LGL+ A G +R DSKLV
Sbjct: 1204 TTNNAAEYEAVLLGLRKAKALGVRRLLIRTDSKLV 1238
>gi|22748432|gb|AAN05397.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 650
Score = 35.0 bits (79), Expect = 5.5, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 19 TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLV 53
TTNN A+Y +++LGL+ A G +R DSKLV
Sbjct: 364 TTNNAAEYEAVLLGLRKAKALGVRRLLIRTDSKLV 398
>gi|38346866|emb|CAE02216.2| OSJNBb0002N06.6 [Oryza sativa Japonica Group]
gi|116309528|emb|CAH66592.1| OSIGBa0092G14.3 [Oryza sativa Indica Group]
Length = 1607
Score = 35.0 bits (79), Expect = 5.5, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 19 TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLV 53
TTNN A+Y +++LGL+ A G +R DSKLV
Sbjct: 1276 TTNNAAEYEAVLLGLRKAKALGVRRLLIRTDSKLV 1310
>gi|110288780|gb|ABG65975.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1565
Score = 35.0 bits (79), Expect = 5.5, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 19 TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLV 53
TTNN A+Y +++LGL+ A G +R DSKLV
Sbjct: 1125 TTNNAAEYEAVLLGLRKAKALGVRRLLIRTDSKLV 1159
>gi|50511382|gb|AAT77305.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 986
Score = 35.0 bits (79), Expect = 5.5, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 19 TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLV 53
TTNN A+Y +++LGL+ A G +R DSKLV
Sbjct: 453 TTNNAAEYEAVLLGLRKAKALGVRRLLIRTDSKLV 487
>gi|46485877|gb|AAS98502.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1048
Score = 35.0 bits (79), Expect = 5.5, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 19 TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLV 53
TTNN A+Y +++LGL+ A G +R DSKLV
Sbjct: 569 TTNNAAEYEAVLLGLRKAKALGVRRLLIRTDSKLV 603
>gi|356551859|ref|XP_003544290.1| PREDICTED: uncharacterized protein LOC100815788 [Glycine max]
Length = 2270
Score = 35.0 bits (79), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC-CWLMEDQTPGMAELCGEAKR 78
TNN+A+Y + ILG++ A+ N + GDS LV Q+ W E + PG+ A+R
Sbjct: 1734 TNNMAEYEACILGIEKAIDLRIKNLDIYGDSALVINQIKGEW--ETRHPGLIPYKDYARR 1791
Query: 79 L 79
L
Sbjct: 1792 L 1792
>gi|356570299|ref|XP_003553327.1| PREDICTED: uncharacterized protein LOC100814838 [Glycine max]
Length = 2284
Score = 35.0 bits (79), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC-CWLMEDQTPGMAELCGEAKR 78
TNN+A+Y + ILG++ A+ N + GDS LV Q+ W E + PG+ A+R
Sbjct: 1748 TNNMAEYEACILGIEKAIDLRIKNLDIYGDSALVINQIKGEW--ETRHPGLIPYKDYARR 1805
Query: 79 L 79
L
Sbjct: 1806 L 1806
>gi|326433667|gb|EGD79237.1| ribonuclease H [Salpingoeca sp. ATCC 50818]
Length = 367
Score = 35.0 bits (79), Expect = 5.6, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 30/61 (49%), Gaps = 10/61 (16%)
Query: 7 GSLIYNHNGVGI----------TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQ 56
G +YN NGV + +T N A+Y L LGL G + VRGDSKL+ Q
Sbjct: 76 GCALYNRNGVLLERHWKSLPNGSTCNEAEYEGLRLGLARCRHLGIADVIVRGDSKLIINQ 135
Query: 57 V 57
V
Sbjct: 136 V 136
>gi|147775038|emb|CAN68243.1| hypothetical protein VITISV_023681 [Vitis vinifera]
Length = 505
Score = 35.0 bits (79), Expect = 5.6, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQ 56
TNN+ +Y + I+GL+ AL G ++GDS LV Q
Sbjct: 49 TNNIVEYEACIIGLEIALDLGIRQLEIQGDSNLVIKQ 85
>gi|77556933|gb|ABA99729.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1320
Score = 35.0 bits (79), Expect = 5.7, Method: Composition-based stats.
Identities = 32/99 (32%), Positives = 41/99 (41%), Gaps = 24/99 (24%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 966 DGSLNLQGAGAGVTLTSPSGDVLKYVVRLDFRATNNMAEYEGLLAGLRAAAGMGIRRLLV 1025
Query: 47 RGDSKLVHMQVCCWLMEDQT--PGMAELCGEAKRLKDKF 83
GDS+LV QV E Q P M E +R++ F
Sbjct: 1026 LGDSQLVVNQVS---KEYQCTDPQMDAYVREVRRMERHF 1061
>gi|406956500|gb|EKD84584.1| ribonuclease H [uncultured bacterium]
Length = 135
Score = 35.0 bits (79), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 5 DDGSLIYNHNG-VGITTNNVAKYGSLILGLKYALQKGFFNFR---VRGDSKLVHMQVC 58
+DG L++ +GI TNNVA+Y +++ LKY +K + R + DSKLV Q+
Sbjct: 27 EDGKLLHESGKYIGIATNNVAEYMAVLEALKYVKEKYSKDLRSIELFADSKLVAEQLS 84
>gi|288924295|ref|ZP_06418314.1| Phosphoglycerate mutase [Frankia sp. EUN1f]
gi|288344357|gb|EFC78867.1| Phosphoglycerate mutase [Frankia sp. EUN1f]
Length = 378
Score = 35.0 bits (79), Expect = 5.8, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 15 GVGITTNNVAKYGSLILGLK-YALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAEL 72
+G TNNVA+Y L+ GL+ A + VR DSKLV Q+ W ++ P M L
Sbjct: 43 AIGTATNNVAEYEGLLAGLRAAADVAPDADLEVRMDSKLVVEQMSGRWKVKH--PSMRPL 100
Query: 73 CGEAKRLKDKFLSI 86
EA L +F S+
Sbjct: 101 VTEASGLVSRFPSV 114
>gi|159039131|ref|YP_001538384.1| phosphoglycerate mutase [Salinispora arenicola CNS-205]
gi|157917966|gb|ABV99393.1| Phosphoglycerate mutase [Salinispora arenicola CNS-205]
Length = 402
Score = 35.0 bits (79), Expect = 6.0, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 15 GVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELC 73
+G TNNVA+Y LI GL+ A + G R DSKLV Q+C W ++ PG+ L
Sbjct: 42 AIGTATNNVAEYRGLIAGLEAAAELGAAEVEARMDSKLVVEQMCGRWQIKH--PGLRPLA 99
Query: 74 GEAKRLKDKFLSI 86
+A L +F ++
Sbjct: 100 AQAAGLVGRFTAV 112
>gi|22857591|gb|AAN09865.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1469
Score = 35.0 bits (79), Expect = 6.2, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMED---QTPGMAELCGEA 76
TNN A+Y L+ G++ A G V+GDS+LV QV +D P +++ E
Sbjct: 1252 TNNTAEYEGLLAGIRAAAVLGAKRLIVKGDSELVTNQV----HKDYKCSNPELSKYLAEV 1307
Query: 77 KRLKDKFLSI 86
++L+ +F I
Sbjct: 1308 RKLEKRFDGI 1317
>gi|110288766|gb|AAP52584.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1486
Score = 35.0 bits (79), Expect = 6.2, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMED---QTPGMAELCGEA 76
TNN A+Y L+ G++ A G V+GDS+LV QV +D P +++ E
Sbjct: 1269 TNNTAEYEGLLAGIRAAAVLGAKRLIVKGDSELVTNQV----HKDYKCSNPELSKYLAEV 1324
Query: 77 KRLKDKFLSI 86
++L+ +F I
Sbjct: 1325 RKLEKRFDGI 1334
>gi|108709364|gb|ABF97159.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 711
Score = 35.0 bits (79), Expect = 6.2, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 25/38 (65%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TNN+A+Y L+ GL+ A + G + V GDS+LV QV
Sbjct: 246 TNNMAEYEGLLAGLRAAARMGIRHLLVLGDSQLVVNQV 283
>gi|13957642|gb|AAK50597.1|AC084404_22 putative gag-pol precursor [Oryza sativa Japonica Group]
Length = 674
Score = 35.0 bits (79), Expect = 6.2, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 25/38 (65%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TNN+A+Y L+ GL+ A + G + V GDS+LV QV
Sbjct: 209 TNNMAEYEGLLAGLRAAARMGIRHLLVLGDSQLVVNQV 246
>gi|359489281|ref|XP_003633904.1| PREDICTED: uncharacterized protein LOC100852807 [Vitis vinifera]
Length = 2158
Score = 35.0 bits (79), Expect = 6.3, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TNN+ +Y + ILGL+ AL+ +V GDS LV Q+
Sbjct: 1621 TNNIVEYEACILGLETALELDIRQMKVFGDSNLVLRQI 1658
>gi|147805489|emb|CAN65175.1| hypothetical protein VITISV_029768 [Vitis vinifera]
Length = 1622
Score = 35.0 bits (79), Expect = 6.3, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 21 NNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
NN+ +Y + ILGL+ AL+ G V GDS LV Q+
Sbjct: 1298 NNIVEYEACILGLESALELGIRQMEVFGDSNLVLRQI 1334
>gi|147778159|emb|CAN60991.1| hypothetical protein VITISV_009628 [Vitis vinifera]
Length = 645
Score = 35.0 bits (79), Expect = 6.3, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TNN+ +Y + ILGL+ AL+ +V GDS LV Q+
Sbjct: 135 TNNIVEYEACILGLETALELDIRQMKVFGDSNLVLRQI 172
>gi|13236667|gb|AAK16189.1|AC079887_21 putative polyprotein [Oryza sativa Japonica Group]
gi|37718794|gb|AAR01665.1| putative retrotransposon gag protein [Oryza sativa Japonica Group]
gi|108711163|gb|ABF98958.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1867
Score = 35.0 bits (79), Expect = 6.4, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 31/71 (43%), Gaps = 19/71 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1346 DGSLSLQGAGAGVTLTSPSGDVLKYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIHRLLV 1405
Query: 47 RGDSKLVHMQV 57
GDS+LV QV
Sbjct: 1406 LGDSQLVVNQV 1416
>gi|116311078|emb|CAH68008.1| OSIGBa0157K09-H0214G12.19 [Oryza sativa Indica Group]
Length = 1346
Score = 35.0 bits (79), Expect = 6.4, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMED---QTPGMAELCGEA 76
TNN A+Y L+ G++ A G V+G+SKLV QV +D P +++ E
Sbjct: 822 TNNTAEYEGLLAGIRAAAALGAKRLIVKGNSKLVANQV----YKDYKCSNPELSKYLSEV 877
Query: 77 KRLKDKFLSI 86
++L+ +F I
Sbjct: 878 RKLERRFDGI 887
>gi|32488455|emb|CAE03388.1| OSJNBa0004N05.12 [Oryza sativa Japonica Group]
Length = 1346
Score = 35.0 bits (79), Expect = 6.4, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMED---QTPGMAELCGEA 76
TNN A+Y L+ G++ A G V+G+SKLV QV +D P +++ E
Sbjct: 822 TNNTAEYEGLLAGIRAAAALGAKRLIVKGNSKLVANQV----YKDYKCSNPELSKYLSEV 877
Query: 77 KRLKDKFLSI 86
++L+ +F I
Sbjct: 878 RKLERRFDGI 887
>gi|78708117|gb|ABB47092.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1064
Score = 35.0 bits (79), Expect = 6.6, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 9/56 (16%)
Query: 7 GSLIYNHNGVGI---------TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLV 53
+++++ NGV I TTNN +Y +++LGL+ A G +R DSKLV
Sbjct: 600 AAVLFSPNGVPIRYATRLQFDTTNNAVEYEAVLLGLRKAKALGVRRLLIRTDSKLV 655
>gi|13992677|gb|AAK51571.1|AC022352_7 Putative retroelement [Oryza sativa Japonica Group]
Length = 1497
Score = 35.0 bits (79), Expect = 6.6, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 9/56 (16%)
Query: 7 GSLIYNHNGVGI---------TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLV 53
+++++ NGV I TTNN +Y +++LGL+ A G +R DSKLV
Sbjct: 1001 AAVLFSPNGVPIRYATRLQFDTTNNAVEYEAVLLGLRKAKALGVRRLLIRTDSKLV 1056
>gi|32483113|emb|CAE02097.1| OSJNBa0020I02.4 [Oryza sativa Japonica Group]
Length = 1615
Score = 34.7 bits (78), Expect = 6.6, Method: Composition-based stats.
Identities = 28/100 (28%), Positives = 42/100 (42%), Gaps = 21/100 (21%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L++GL+ A G V
Sbjct: 1141 DGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLVGLRVAAGLGIRRLLV 1200
Query: 47 RGDSKLVHMQVCCWLMEDQTPGMAELCGEAKRLKDKFLSI 86
GDS+LV Q +L P E +R+ +++ +
Sbjct: 1201 LGDSQLVVNQA--YLANKTLPEDREGSERVRRISKRYVLV 1238
>gi|108709491|gb|ABF97286.1| transposon protein, putative, unclassified [Oryza sativa Japonica
Group]
Length = 1515
Score = 34.7 bits (78), Expect = 6.8, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMED---QTPGMAELCGEA 76
TNN A+Y L+ G++ A G V+GDS+L+ QV +D P +++ E
Sbjct: 966 TNNTAEYEGLLAGIRAAAALGAKRLIVKGDSELIANQV----HKDYKCTNPELSKYLAEV 1021
Query: 77 KRLKDKFLSI 86
++L+ +F I
Sbjct: 1022 RKLEKRFDGI 1031
>gi|294102762|ref|YP_003554620.1| ribonuclease H [Aminobacterium colombiense DSM 12261]
gi|293617742|gb|ADE57896.1| ribonuclease H [Aminobacterium colombiense DSM 12261]
Length = 198
Score = 34.7 bits (78), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 16/88 (18%)
Query: 4 ADDGSLIYNHNG---------VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVH 54
A G+++YN G +G TNN A+YG L+L L+ +G +RGDS+L
Sbjct: 17 AGAGAVLYNEEGHMVWQKFAYLGSQTNNEAEYGGLLLLLREIQLRGIKKIVIRGDSRL-- 74
Query: 55 MQVCCWLMED---QTPGMAELCGEAKRL 79
V C + ++ +P + EL EA+ L
Sbjct: 75 --VICQMKKEWKVNSPHLKELWEEAQSL 100
>gi|77553894|gb|ABA96690.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 308
Score = 34.7 bits (78), Expect = 7.0, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 26/39 (66%)
Query: 19 TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TTNN +Y ++++GL+ A G ++ +R +SKLV QV
Sbjct: 13 TTNNTIEYEAVLMGLRKAKALGVWHLLIRTNSKLVASQV 51
>gi|38345971|emb|CAE04054.2| OSJNBb0062B06.12 [Oryza sativa Japonica Group]
Length = 1737
Score = 34.7 bits (78), Expect = 7.0, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 19/67 (28%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A + G V
Sbjct: 1365 DGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYAGLLAGLRVAARLGIRRLLV 1424
Query: 47 RGDSKLV 53
GDS+LV
Sbjct: 1425 LGDSQLV 1431
>gi|147816233|emb|CAN70858.1| hypothetical protein VITISV_022428 [Vitis vinifera]
Length = 576
Score = 34.7 bits (78), Expect = 7.0, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TNN+ +Y + ILGL+ AL+ G V GD LV Q+
Sbjct: 114 TNNIVEYEACILGLETALELGIGQMEVFGDPNLVLKQI 151
>gi|116311109|emb|CAH68036.1| OSIGBa0139N19-OSIGBa0137L10.5 [Oryza sativa Indica Group]
Length = 1737
Score = 34.7 bits (78), Expect = 7.0, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 19/67 (28%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A + G V
Sbjct: 1365 DGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYAGLLAGLRVAARLGIRRLLV 1424
Query: 47 RGDSKLV 53
GDS+LV
Sbjct: 1425 LGDSQLV 1431
>gi|108800308|ref|YP_640505.1| bifunctional RNase H/acid phosphatase [Mycobacterium sp. MCS]
gi|119869436|ref|YP_939388.1| bifunctional RNase H/acid phosphatase [Mycobacterium sp. KMS]
gi|126435931|ref|YP_001071622.1| bifunctional RNase H/acid phosphatase [Mycobacterium sp. JLS]
gi|108770727|gb|ABG09449.1| Phosphoglycerate mutase [Mycobacterium sp. MCS]
gi|119695525|gb|ABL92598.1| Phosphoglycerate mutase [Mycobacterium sp. KMS]
gi|126235731|gb|ABN99131.1| Phosphoglycerate mutase [Mycobacterium sp. JLS]
Length = 365
Score = 34.7 bits (78), Expect = 7.0, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 16 VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTPGMAELCG 74
+G TNNVA+Y LI GL+ A G V DSKL+ Q+ W ++ P + L
Sbjct: 40 IGRATNNVAEYRGLIAGLEEAANVGATEVAVSMDSKLIVEQMAGRWRVKH--PDLIPLYQ 97
Query: 75 EAKRLKDKF 83
A+ L + F
Sbjct: 98 RARELAEGF 106
>gi|145479397|ref|XP_001425721.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124392793|emb|CAK58323.1| unnamed protein product [Paramecium tetraurelia]
Length = 321
Score = 34.7 bits (78), Expect = 7.1, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 16 VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLV 53
+G TNNVA++ +L G++Y L G GDSKLV
Sbjct: 223 LGKQTNNVAEFLALFFGIRYTLNLGINFLECFGDSKLV 260
>gi|29837770|gb|AAP05806.1| putative GAG-POL precursor [Oryza sativa Japonica Group]
gi|50399970|gb|AAT76358.1| putative GAG-POL precursor [Oryza sativa Japonica Group]
Length = 964
Score = 34.7 bits (78), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 11/69 (15%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV-----CCWLMEDQTPGMAELCG 74
TNN A+Y L+ G++ A G V+GDS+L+ QV C P +++
Sbjct: 415 TNNTAEYEGLLAGIRAAAALGAKRLIVKGDSELIANQVHKDYKCT------NPELSKYLA 468
Query: 75 EAKRLKDKF 83
E ++L+ +F
Sbjct: 469 EVRKLEKRF 477
>gi|38344085|emb|CAE01745.2| OSJNBb0056F09.8 [Oryza sativa Japonica Group]
Length = 1751
Score = 34.7 bits (78), Expect = 7.5, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 32/71 (45%), Gaps = 19/71 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G + V
Sbjct: 1340 DGSLSLQGAGAGVTLTSSSCDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRHLLV 1399
Query: 47 RGDSKLVHMQV 57
GDS+LV QV
Sbjct: 1400 LGDSQLVVNQV 1410
>gi|147787295|emb|CAN77994.1| hypothetical protein VITISV_001518 [Vitis vinifera]
Length = 805
Score = 34.7 bits (78), Expect = 7.6, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TNN+ +Y + ILGL+ L+ G V GDS LV Q+
Sbjct: 517 TNNIIEYEACILGLETTLELGIRQIEVFGDSNLVLRQI 554
>gi|57863833|gb|AAW56879.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 2050
Score = 34.7 bits (78), Expect = 7.6, Method: Composition-based stats.
Identities = 28/100 (28%), Positives = 42/100 (42%), Gaps = 21/100 (21%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 967 DGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1026
Query: 47 RGDSKLVHMQVCCWLMEDQTPGMAELCGEAKRLKDKFLSI 86
GDS+LV Q +L + P E +R+ +++ +
Sbjct: 1027 LGDSQLVVNQA--YLADKTLPEDREGSERVRRISKRYVLV 1064
>gi|147839258|emb|CAN67959.1| hypothetical protein VITISV_033799 [Vitis vinifera]
Length = 971
Score = 34.7 bits (78), Expect = 7.6, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 18 ITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHM 55
+ TNN+ +Y + ILGL+ AL+ G V GDS ++ +
Sbjct: 834 LATNNIVEYEACILGLETALELGIRQMEVFGDSNMLRL 871
>gi|116309774|emb|CAH66815.1| OSIGBa0093K19.2 [Oryza sativa Indica Group]
Length = 994
Score = 34.7 bits (78), Expect = 7.7, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 31/72 (43%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ L+ A G V
Sbjct: 408 DGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFWATNNMAEYEGLLAELRVAAGLGIRRLLV 467
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 468 LGDSQLVVNQVC 479
>gi|77550752|gb|ABA93549.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1000
Score = 34.7 bits (78), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC-CWLMEDQTPGMAELCGEAKR 78
++NVA+Y +L+ GL A+ G VRGDS+LV QV W D M E ++
Sbjct: 496 SHNVAEYEALLHGLWIAISLGIKRLIVRGDSQLVVNQVMKKWSCLDD--NMTAYRQEVRK 553
Query: 79 LKDKF 83
L+ KF
Sbjct: 554 LESKF 558
>gi|116311033|emb|CAH67964.1| OSIGBa0142I02-OSIGBa0101B20.7 [Oryza sativa Indica Group]
Length = 1873
Score = 34.7 bits (78), Expect = 7.8, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 31/71 (43%), Gaps = 19/71 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1332 DGSLSLQGAGAGVTLTSPSGDVLKYLVRLDFRATNNMAEYEGLLAGLRMATGLGICRLLV 1391
Query: 47 RGDSKLVHMQV 57
GDS+LV QV
Sbjct: 1392 LGDSQLVVNQV 1402
>gi|116309075|emb|CAH66184.1| OSIGBa0130O15.8 [Oryza sativa Indica Group]
Length = 2046
Score = 34.7 bits (78), Expect = 7.8, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 31/72 (43%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TN +A+Y L+ GL+ A G V
Sbjct: 1485 DGSLSLQGAGAGVTLTSPNGDVLKYLVRLDFRATNYMAEYEGLLAGLRVAAGLGIRRLLV 1544
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1545 LGDSQLVVNQVC 1556
>gi|156937941|ref|YP_001435737.1| ribonuclease H [Ignicoccus hospitalis KIN4/I]
gi|156566925|gb|ABU82330.1| ribonuclease H [Ignicoccus hospitalis KIN4/I]
Length = 163
Score = 34.7 bits (78), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 19 TTNNVAKYGSLILGLKYALQKGFFNFR--VRGDSKLVHMQVCCWLMEDQTPGMAELCGEA 76
TNNVA+Y +LI L+ L+KG V+GDS+L Q+ + ++P +A L A
Sbjct: 55 VTNNVAEYTALIKALECLLEKGLEGAEVVVKGDSQLAIRQLRGE-YKVRSPRIAPLYKRA 113
Query: 77 KRLKDKF 83
K L KF
Sbjct: 114 KELLSKF 120
>gi|38345992|emb|CAE01940.2| OSJNBa0073L13.2 [Oryza sativa Japonica Group]
Length = 943
Score = 34.7 bits (78), Expect = 8.1, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 24/39 (61%)
Query: 19 TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TTNN +Y +++LGL+ A + G +R DSKLV V
Sbjct: 439 TTNNTIEYEAVLLGLRKAKELGVRRLLIRTDSKLVASHV 477
>gi|58531998|emb|CAE04098.3| OSJNBa0096F01.7 [Oryza sativa Japonica Group]
Length = 1946
Score = 34.7 bits (78), Expect = 8.1, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 31/72 (43%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ L+ A G V
Sbjct: 1360 DGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLARLRVAAGLGIRRLLV 1419
Query: 47 RGDSKLVHMQVC 58
GDS+LV QVC
Sbjct: 1420 LGDSQLVVNQVC 1431
>gi|147773960|emb|CAN73994.1| hypothetical protein VITISV_029123 [Vitis vinifera]
Length = 1192
Score = 34.7 bits (78), Expect = 8.3, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 19 TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLV 53
T NN+ +Y + ILGL+ AL+ G + GDS LV
Sbjct: 924 TMNNIVEYEACILGLETALELGIRQMEIFGDSNLV 958
>gi|147795641|emb|CAN61212.1| hypothetical protein VITISV_014943 [Vitis vinifera]
Length = 308
Score = 34.7 bits (78), Expect = 8.5, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLV--HMQVCCWLME 63
TNN+ +Y + I GL+ L G + GDS LV Q CC ++
Sbjct: 171 TNNIVEYEACITGLETTLDLGVRQLEIHGDSNLVIQQTQDCCQFVQ 216
>gi|147768539|emb|CAN60625.1| hypothetical protein VITISV_027087 [Vitis vinifera]
Length = 2221
Score = 34.7 bits (78), Expect = 8.5, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TNN+ +Y ILGL+ AL+ G V G+S LV Q+
Sbjct: 1576 TNNIVEYEGCILGLETALELGIRQMEVFGESNLVLRQI 1613
>gi|440577281|emb|CCI55289.1| PH01B001G05.12 [Phyllostachys edulis]
Length = 1335
Score = 34.7 bits (78), Expect = 8.6, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 19/71 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL + +G G+ TNNVA+Y L+ G++ A +
Sbjct: 943 DGSLTLSDSGAGVVLVSPTGKTLKYAIQLNFQATNNVAEYKGLLAGIRAAKALSICRLLM 1002
Query: 47 RGDSKLVHMQV 57
RGDS+LV QV
Sbjct: 1003 RGDSQLVVNQV 1013
>gi|77552067|gb|ABA94864.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1911
Score = 34.7 bits (78), Expect = 8.6, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 31/72 (43%), Gaps = 19/72 (26%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1325 DGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1384
Query: 47 RGDSKLVHMQVC 58
DS+LV QVC
Sbjct: 1385 LCDSQLVVNQVC 1396
>gi|147770667|emb|CAN69026.1| hypothetical protein VITISV_041027 [Vitis vinifera]
Length = 888
Score = 34.7 bits (78), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMEDQTPGMAELCGEAKRL 79
+NNV +Y +LI+GL+ A++ + + GDSKL Q+ L E ++ + A +L
Sbjct: 540 SNNVVEYQALIIGLQMAIEMKITSLEICGDSKLEINQLLA-LYEVKSDNLVPHFQYATQL 598
Query: 80 KDKFLSI 86
+KF I
Sbjct: 599 MEKFERI 605
>gi|50511389|gb|AAT77312.1| putative polyprotein [Oryza sativa Japonica Group]
gi|50511410|gb|AAT77333.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1551
Score = 34.3 bits (77), Expect = 8.6, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMED---QTPGMAELCGEA 76
TNN +Y L+ G++ A G V+GDSKL+ QV +D P +++ E
Sbjct: 1047 TNNTTEYEGLLAGIRAAAALGAKRLIVKGDSKLIANQV----HKDYKCSNPELSKYLSEV 1102
Query: 77 KRLKDKFLSI 86
++L+ +F I
Sbjct: 1103 RKLERRFNGI 1112
>gi|420863765|ref|ZP_15327158.1| ribonuclease HI [Mycobacterium abscessus 4S-0303]
gi|420868165|ref|ZP_15331549.1| ribonuclease HI [Mycobacterium abscessus 4S-0726-RA]
gi|420872597|ref|ZP_15335977.1| ribonuclease HI [Mycobacterium abscessus 4S-0726-RB]
gi|420986789|ref|ZP_15449950.1| ribonuclease HI [Mycobacterium abscessus 4S-0206]
gi|421038986|ref|ZP_15501997.1| ribonuclease HI [Mycobacterium abscessus 4S-0116-R]
gi|421042955|ref|ZP_15505958.1| ribonuclease HI [Mycobacterium abscessus 4S-0116-S]
gi|392071858|gb|EIT97700.1| ribonuclease HI [Mycobacterium abscessus 4S-0726-RA]
gi|392074285|gb|EIU00124.1| ribonuclease HI [Mycobacterium abscessus 4S-0303]
gi|392076786|gb|EIU02619.1| ribonuclease HI [Mycobacterium abscessus 4S-0726-RB]
gi|392188206|gb|EIV13845.1| ribonuclease HI [Mycobacterium abscessus 4S-0206]
gi|392227200|gb|EIV52714.1| ribonuclease HI [Mycobacterium abscessus 4S-0116-R]
gi|392240886|gb|EIV66377.1| ribonuclease HI [Mycobacterium abscessus 4S-0116-S]
Length = 367
Score = 34.3 bits (77), Expect = 8.9, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 25/44 (56%)
Query: 14 NGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
+ +G TNNVA+Y LI GL A + G V DSKLV Q+
Sbjct: 38 DAIGHATNNVAEYRGLIAGLAEAARLGATEVSVSMDSKLVVEQM 81
>gi|419717139|ref|ZP_14244530.1| bifunctional RNase H/acid phosphatase [Mycobacterium abscessus
M94]
gi|382938582|gb|EIC62912.1| bifunctional RNase H/acid phosphatase [Mycobacterium abscessus
M94]
Length = 367
Score = 34.3 bits (77), Expect = 8.9, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 25/44 (56%)
Query: 14 NGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
+ +G TNNVA+Y LI GL A + G V DSKLV Q+
Sbjct: 38 DAIGHATNNVAEYRGLIAGLAEAARLGATEVSVSMDSKLVVEQM 81
>gi|418420044|ref|ZP_12993225.1| RNase H/acid phosphatase [Mycobacterium abscessus subsp. bolletii
BD]
gi|363999881|gb|EHM21082.1| RNase H/acid phosphatase [Mycobacterium abscessus subsp. bolletii
BD]
Length = 367
Score = 34.3 bits (77), Expect = 8.9, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 25/44 (56%)
Query: 14 NGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
+ +G TNNVA+Y LI GL A + G V DSKLV Q+
Sbjct: 38 DAIGHATNNVAEYRGLIAGLAEAARLGATEVSVSMDSKLVVEQM 81
>gi|365869848|ref|ZP_09409394.1| RNase H/acid phosphatase [Mycobacterium massiliense CCUG 48898 =
JCM 15300]
gi|414582616|ref|ZP_11439756.1| ribonuclease HI [Mycobacterium abscessus 5S-1215]
gi|420876923|ref|ZP_15340293.1| ribonuclease HI [Mycobacterium abscessus 5S-0304]
gi|420882488|ref|ZP_15345852.1| ribonuclease HI [Mycobacterium abscessus 5S-0421]
gi|420888552|ref|ZP_15351905.1| ribonuclease HI [Mycobacterium abscessus 5S-0422]
gi|420893582|ref|ZP_15356924.1| ribonuclease HI [Mycobacterium abscessus 5S-0708]
gi|420898183|ref|ZP_15361519.1| ribonuclease HI [Mycobacterium abscessus 5S-0817]
gi|420904204|ref|ZP_15367524.1| ribonuclease HI [Mycobacterium abscessus 5S-1212]
gi|420971250|ref|ZP_15434446.1| ribonuclease HI [Mycobacterium abscessus 5S-0921]
gi|421048746|ref|ZP_15511742.1| ribonuclease HI [Mycobacterium massiliense CCUG 48898 = JCM
15300]
gi|363998031|gb|EHM19239.1| RNase H/acid phosphatase [Mycobacterium massiliense CCUG 48898 =
JCM 15300]
gi|392089544|gb|EIU15361.1| ribonuclease HI [Mycobacterium abscessus 5S-0304]
gi|392091543|gb|EIU17354.1| ribonuclease HI [Mycobacterium abscessus 5S-0421]
gi|392092166|gb|EIU17975.1| ribonuclease HI [Mycobacterium abscessus 5S-0422]
gi|392102172|gb|EIU27959.1| ribonuclease HI [Mycobacterium abscessus 5S-0708]
gi|392107424|gb|EIU33206.1| ribonuclease HI [Mycobacterium abscessus 5S-0817]
gi|392108028|gb|EIU33809.1| ribonuclease HI [Mycobacterium abscessus 5S-1212]
gi|392117768|gb|EIU43536.1| ribonuclease HI [Mycobacterium abscessus 5S-1215]
gi|392171657|gb|EIU97333.1| ribonuclease HI [Mycobacterium abscessus 5S-0921]
gi|392242911|gb|EIV68398.1| ribonuclease HI [Mycobacterium massiliense CCUG 48898]
Length = 367
Score = 34.3 bits (77), Expect = 8.9, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 25/44 (56%)
Query: 14 NGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
+ +G TNNVA+Y LI GL A + G V DSKLV Q+
Sbjct: 38 DAIGHATNNVAEYRGLIAGLAEAARLGATEVSVSMDSKLVVEQM 81
>gi|397679207|ref|YP_006520742.1| hypothetical protein MYCMA_0987 [Mycobacterium massiliense str.
GO 06]
gi|418249476|ref|ZP_12875798.1| bifunctional RNase H/acid phosphatase [Mycobacterium abscessus
47J26]
gi|420951465|ref|ZP_15414710.1| ribonuclease HI [Mycobacterium massiliense 2B-0626]
gi|420955636|ref|ZP_15418875.1| ribonuclease HI [Mycobacterium massiliense 2B-0107]
gi|420960762|ref|ZP_15423990.1| ribonuclease HI [Mycobacterium massiliense 2B-1231]
gi|420991604|ref|ZP_15454755.1| ribonuclease HI [Mycobacterium massiliense 2B-0307]
gi|420997443|ref|ZP_15460582.1| ribonuclease HI [Mycobacterium massiliense 2B-0912-R]
gi|421001877|ref|ZP_15465005.1| ribonuclease HI [Mycobacterium massiliense 2B-0912-S]
gi|353451131|gb|EHB99525.1| bifunctional RNase H/acid phosphatase [Mycobacterium abscessus
47J26]
gi|392159547|gb|EIU85241.1| ribonuclease HI [Mycobacterium massiliense 2B-0626]
gi|392188268|gb|EIV13906.1| ribonuclease HI [Mycobacterium massiliense 2B-0307]
gi|392188328|gb|EIV13965.1| ribonuclease HI [Mycobacterium massiliense 2B-0912-R]
gi|392198489|gb|EIV24101.1| ribonuclease HI [Mycobacterium massiliense 2B-0912-S]
gi|392253827|gb|EIV79294.1| ribonuclease HI [Mycobacterium massiliense 2B-1231]
gi|392256164|gb|EIV81625.1| ribonuclease HI [Mycobacterium massiliense 2B-0107]
gi|395457472|gb|AFN63135.1| Uncharacterized protein MYCMA_0987 [Mycobacterium massiliense
str. GO 06]
Length = 367
Score = 34.3 bits (77), Expect = 8.9, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 25/44 (56%)
Query: 14 NGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
+ +G TNNVA+Y LI GL A + G V DSKLV Q+
Sbjct: 38 DAIGHATNNVAEYRGLIAGLAEAARLGATEVSVSMDSKLVVEQM 81
>gi|169628993|ref|YP_001702642.1| bifunctional RNase H/acid phosphatase [Mycobacterium abscessus
ATCC 19977]
gi|419712078|ref|ZP_14239541.1| bifunctional RNase H/acid phosphatase [Mycobacterium abscessus
M93]
gi|420909486|ref|ZP_15372799.1| ribonuclease HI [Mycobacterium abscessus 6G-0125-R]
gi|420915872|ref|ZP_15379177.1| ribonuclease HI [Mycobacterium abscessus 6G-0125-S]
gi|420920256|ref|ZP_15383554.1| ribonuclease HI [Mycobacterium abscessus 6G-0728-S]
gi|420926757|ref|ZP_15390042.1| ribonuclease HI [Mycobacterium abscessus 6G-1108]
gi|420930953|ref|ZP_15394229.1| ribonuclease HI [Mycobacterium massiliense 1S-151-0930]
gi|420939217|ref|ZP_15402486.1| ribonuclease HI [Mycobacterium massiliense 1S-152-0914]
gi|420941211|ref|ZP_15404471.1| ribonuclease HI [Mycobacterium massiliense 1S-153-0915]
gi|420945750|ref|ZP_15409003.1| ribonuclease HI [Mycobacterium massiliense 1S-154-0310]
gi|420966268|ref|ZP_15429476.1| ribonuclease HI [Mycobacterium abscessus 3A-0810-R]
gi|420977101|ref|ZP_15440283.1| ribonuclease HI [Mycobacterium abscessus 6G-0212]
gi|420982482|ref|ZP_15445652.1| ribonuclease HI [Mycobacterium abscessus 6G-0728-R]
gi|421006644|ref|ZP_15469758.1| ribonuclease HI [Mycobacterium abscessus 3A-0119-R]
gi|421012405|ref|ZP_15475495.1| ribonuclease HI [Mycobacterium abscessus 3A-0122-R]
gi|421017273|ref|ZP_15480338.1| ribonuclease HI [Mycobacterium abscessus 3A-0122-S]
gi|421022493|ref|ZP_15485541.1| ribonuclease HI [Mycobacterium abscessus 3A-0731]
gi|421028797|ref|ZP_15491832.1| ribonuclease HI [Mycobacterium abscessus 3A-0930-R]
gi|421033596|ref|ZP_15496618.1| ribonuclease HI [Mycobacterium abscessus 3A-0930-S]
gi|169240960|emb|CAM61988.1| Putative phosphoglycerate mutase [Mycobacterium abscessus]
gi|382939400|gb|EIC63729.1| bifunctional RNase H/acid phosphatase [Mycobacterium abscessus
M93]
gi|392121860|gb|EIU47625.1| ribonuclease HI [Mycobacterium abscessus 6G-0125-R]
gi|392123556|gb|EIU49318.1| ribonuclease HI [Mycobacterium abscessus 6G-0125-S]
gi|392134261|gb|EIU60003.1| ribonuclease HI [Mycobacterium abscessus 6G-0728-S]
gi|392139165|gb|EIU64898.1| ribonuclease HI [Mycobacterium abscessus 6G-1108]
gi|392139971|gb|EIU65703.1| ribonuclease HI [Mycobacterium massiliense 1S-151-0930]
gi|392144732|gb|EIU70457.1| ribonuclease HI [Mycobacterium massiliense 1S-152-0914]
gi|392151338|gb|EIU77048.1| ribonuclease HI [Mycobacterium massiliense 1S-153-0915]
gi|392158958|gb|EIU84654.1| ribonuclease HI [Mycobacterium massiliense 1S-154-0310]
gi|392171360|gb|EIU97037.1| ribonuclease HI [Mycobacterium abscessus 6G-0212]
gi|392174500|gb|EIV00167.1| ribonuclease HI [Mycobacterium abscessus 6G-0728-R]
gi|392201187|gb|EIV26788.1| ribonuclease HI [Mycobacterium abscessus 3A-0119-R]
gi|392207255|gb|EIV32833.1| ribonuclease HI [Mycobacterium abscessus 3A-0122-R]
gi|392214076|gb|EIV39630.1| ribonuclease HI [Mycobacterium abscessus 3A-0122-S]
gi|392215190|gb|EIV40738.1| ribonuclease HI [Mycobacterium abscessus 3A-0731]
gi|392230137|gb|EIV55647.1| ribonuclease HI [Mycobacterium abscessus 3A-0930-S]
gi|392231362|gb|EIV56871.1| ribonuclease HI [Mycobacterium abscessus 3A-0930-R]
gi|392255269|gb|EIV80731.1| ribonuclease HI [Mycobacterium abscessus 3A-0810-R]
Length = 367
Score = 34.3 bits (77), Expect = 8.9, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 25/44 (56%)
Query: 14 NGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
+ +G TNNVA+Y LI GL A + G V DSKLV Q+
Sbjct: 38 DAIGHATNNVAEYRGLIAGLAEAARLGATEVSVSMDSKLVVEQM 81
>gi|147767185|emb|CAN66964.1| hypothetical protein VITISV_013143 [Vitis vinifera]
Length = 869
Score = 34.3 bits (77), Expect = 8.9, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TN + +Y + ILGL+ AL+ G V GDS LV Q+
Sbjct: 429 TNKIVEYEACILGLETALELGIRQMEVFGDSNLVLRQI 466
>gi|147817789|emb|CAN66657.1| hypothetical protein VITISV_028353 [Vitis vinifera]
Length = 1034
Score = 34.3 bits (77), Expect = 9.0, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
TNN+ +Y + ILGLK L+ +V GDS LV Q+
Sbjct: 959 TNNIVEYEACILGLKTTLELRIRQMKVFGDSNLVLRQI 996
>gi|38605855|emb|CAE03705.3| OSJNBb0034G17.13 [Oryza sativa Japonica Group]
Length = 787
Score = 34.3 bits (77), Expect = 9.0, Method: Composition-based stats.
Identities = 28/100 (28%), Positives = 42/100 (42%), Gaps = 21/100 (21%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 313 DGSLSLQGAGAGVTLTSPNGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 372
Query: 47 RGDSKLVHMQVCCWLMEDQTPGMAELCGEAKRLKDKFLSI 86
GDS+LV Q +L + P E +R+ +++ +
Sbjct: 373 LGDSQLVVNQA--YLTDKTLPEDREGSERVQRISKRYVLV 410
>gi|51854361|gb|AAU10741.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1510
Score = 34.3 bits (77), Expect = 9.3, Method: Composition-based stats.
Identities = 28/100 (28%), Positives = 42/100 (42%), Gaps = 21/100 (21%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G V
Sbjct: 1134 DGSLSLQGAGAGVTLTSPNGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLV 1193
Query: 47 RGDSKLVHMQVCCWLMEDQTPGMAELCGEAKRLKDKFLSI 86
GDS+LV Q +L + P E +R+ +++ +
Sbjct: 1194 LGDSQLVVNQA--YLTDKTLPEDCEGSERIQRISKRYVLV 1231
>gi|89179457|gb|ABD63192.1| Reverse transcriptase family protein [Asparagus officinalis]
Length = 1146
Score = 34.3 bits (77), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
+NNVA+Y +L++GL +A + G GDS+L+ QV
Sbjct: 1009 SNNVAEYNALLIGLSFAKELGVEYLEAFGDSQLIVNQV 1046
>gi|77555161|gb|ABA97957.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1984
Score = 34.3 bits (77), Expect = 9.5, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 10/79 (12%)
Query: 6 DGSLIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMED 64
DGS + G G+ Y +L+ GL+ A+ G VRGDS+LV QV W D
Sbjct: 1441 DGSKRLSGTGAGV-------YEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCID 1493
Query: 65 QTPGMAELCGEAKRLKDKF 83
M E ++L+DKF
Sbjct: 1494 DN--MMAYRQEVRKLEDKF 1510
>gi|336178893|ref|YP_004584268.1| phosphoglycerate mutase [Frankia symbiont of Datisca glomerata]
gi|334859873|gb|AEH10347.1| Phosphoglycerate mutase [Frankia symbiont of Datisca glomerata]
Length = 380
Score = 34.3 bits (77), Expect = 9.5, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 4 ADDGSLIYNHNG-VGITTNNVAKYGSLILGLK-YALQKGFFNFRVRGDSKLVHMQVCC-W 60
AD G+++ G +G TNNVA+Y LI GL+ A + VR DSKLV Q+ W
Sbjct: 33 ADTGAVLAERAGAIGRATNNVAEYQGLIAGLRAAADLAPDADVEVRMDSKLVVEQMSGRW 92
Query: 61 LMEDQTPGMAELCGEAKRLKDKF 83
++ P M L +A + +F
Sbjct: 93 KIKH--PAMRPLATQAADVAREF 113
>gi|147766328|emb|CAN65526.1| hypothetical protein VITISV_029581 [Vitis vinifera]
Length = 541
Score = 34.3 bits (77), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 19 TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMED 64
T NN+ +Y + ILGL+ L+ G GDS + ++ C L++D
Sbjct: 199 TMNNIVEYEAYILGLEMTLELGIRQMEAFGDSNMRYVLTYCCLIDD 244
>gi|77556683|gb|ABA99479.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1322
Score = 34.3 bits (77), Expect = 9.7, Method: Composition-based stats.
Identities = 28/100 (28%), Positives = 42/100 (42%), Gaps = 21/100 (21%)
Query: 6 DGSLIYNHNGVGIT-------------------TNNVAKYGSLILGLKYALQKGFFNFRV 46
DGSL G G+T TNN+A+Y L+ GL+ A G + V
Sbjct: 921 DGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRHLLV 980
Query: 47 RGDSKLVHMQVCCWLMEDQTPGMAELCGEAKRLKDKFLSI 86
GDS+LV Q +L P E +R+ +++ +
Sbjct: 981 LGDSQLVVKQA--YLANKTLPEDREGSERVQRISKRYVLV 1018
>gi|406965211|gb|EKD90867.1| ribonuclease H [uncultured bacterium]
Length = 134
Score = 34.3 bits (77), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 7/59 (11%)
Query: 6 DGSLIYNHNG-VGITTNNVAKYGSLILGLKYALQKGFF-----NFRVRGDSKLVHMQVC 58
DG +++ H G +G+ TNNVA+Y +++ Y L+K + N ++ DS+L+ Q+
Sbjct: 26 DGEVLHEHGGKIGVNTNNVAEYTAVLEAFAY-LKKNVYKGEPLNIQLIADSQLIVRQLA 83
>gi|147768604|emb|CAN64926.1| hypothetical protein VITISV_025807 [Vitis vinifera]
Length = 1989
Score = 34.3 bits (77), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%)
Query: 19 TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
T NN+ +Y + ILGL+ L+ G V GDS LV Q+
Sbjct: 818 TMNNIVEYETCILGLETTLELGIGQMEVFGDSNLVLRQI 856
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.324 0.140 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,365,521,074
Number of Sequences: 23463169
Number of extensions: 46028452
Number of successful extensions: 104645
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 210
Number of HSP's that attempted gapping in prelim test: 103749
Number of HSP's gapped (non-prelim): 1055
length of query: 86
length of database: 8,064,228,071
effective HSP length: 56
effective length of query: 30
effective length of database: 6,750,290,607
effective search space: 202508718210
effective search space used: 202508718210
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 69 (31.2 bits)