BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034727
(86 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P64956|Y2253_MYCBO Uncharacterized protein Mb2253c OS=Mycobacterium bovis (strain ATCC
BAA-935 / AF2122/97) GN=Mb2253c PE=4 SV=1
Length = 364
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 9 LIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTP 67
L + +G TNNVA+Y LI GL A++ G V DSKLV Q+ W ++ P
Sbjct: 33 LAESKQAIGRATNNVAEYRGLIAGLDDAVKLGATEAAVLMDSKLVVEQMSGRWKVKH--P 90
Query: 68 GMAELCGEAKRLKDKFLSI 86
+ +L +A+ L +F I
Sbjct: 91 DLLKLYVQAQALASQFRRI 109
>sp|P64955|Y2228_MYCTU Uncharacterized protein Rv2228c/MT2287 OS=Mycobacterium
tuberculosis GN=Rv2228c PE=1 SV=1
Length = 364
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 9 LIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCC-WLMEDQTP 67
L + +G TNNVA+Y LI GL A++ G V DSKLV Q+ W ++ P
Sbjct: 33 LAESKQAIGRATNNVAEYRGLIAGLDDAVKLGATEAAVLMDSKLVVEQMSGRWKVKH--P 90
Query: 68 GMAELCGEAKRLKDKFLSI 86
+ +L +A+ L +F I
Sbjct: 91 DLLKLYVQAQALASQFRRI 109
>sp|Q9HSF6|RNH_HALSA Ribonuclease HI OS=Halobacterium salinarum (strain ATCC 700922 /
JCM 11081 / NRC-1) GN=rnhA PE=1 SV=1
Length = 199
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 1 MLRADDGSLIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC-C 59
++ D G + + +G TNN A+Y +LI L+ A GF + +RGDS+LV Q+
Sbjct: 91 LVSGDGGIVAEGGDTIGRATNNQAEYDALIAALEAAADFGFDDIELRGDSQLVEKQLTGA 150
Query: 60 WLMED 64
W D
Sbjct: 151 WDTND 155
>sp|F9VN79|RNH_SULTO Ribonuclease HI OS=Sulfolobus tokodaii (strain DSM 16993 / JCM
10545 / NBRC 100140 / 7) GN=rnhA PE=1 SV=1
Length = 149
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 26/39 (66%)
Query: 19 TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57
+TNNVA+Y LI ++ L+ G + ++GDS+LV Q+
Sbjct: 46 STNNVAEYSGLICLMETMLRLGISSPIIKGDSQLVIKQM 84
>sp|P54162|RNHL_BACSU 14.7 kDa ribonuclease H-like protein OS=Bacillus subtilis (strain
168) GN=rnhA PE=1 SV=1
Length = 132
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 16 VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMEDQTPGMAELCGE 75
+G+ TN A++ +LI G+K +G+ + R DS +V ++++ T E
Sbjct: 37 IGVHTNQEAEFLALIEGMKLCATRGYQSVSFRTDSDIVERATELEMVKNIT--FQPFVEE 94
Query: 76 AKRLKDKF 83
RLK F
Sbjct: 95 IIRLKAAF 102
>sp|A5GWM2|SPEA_SYNR3 Biosynthetic arginine decarboxylase OS=Synechococcus sp. (strain
RCC307) GN=speA PE=3 SV=1
Length = 640
Score = 29.6 bits (65), Expect = 6.0, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 36 ALQKGFFNFRVRGDSKLVHMQVCCWLMEDQTPGMAELCGEAKRLKDKFLS 85
A + G+ + RG ++ ++ CC + D PG EL E K LK F S
Sbjct: 414 AFRLGYLSLTERGKAEQLYW-ACCSAIADLLPGEEELPDELKGLKAAFAS 462
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.140 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,586,113
Number of Sequences: 539616
Number of extensions: 1131972
Number of successful extensions: 2581
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2576
Number of HSP's gapped (non-prelim): 6
length of query: 86
length of database: 191,569,459
effective HSP length: 56
effective length of query: 30
effective length of database: 161,350,963
effective search space: 4840528890
effective search space used: 4840528890
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.8 bits)