Query 034727
Match_columns 86
No_of_seqs 135 out of 1027
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 09:17:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034727.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034727hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hst_B Protein RV2228C/MT2287; 99.8 1.6E-19 5.6E-24 111.6 8.0 83 1-85 24-109 (141)
2 3u3g_D Ribonuclease H, RNAse H 99.8 2E-19 7E-24 110.6 8.3 83 1-85 24-113 (140)
3 2ehg_A Ribonuclease HI; RNAse 99.8 2.6E-18 8.8E-23 107.7 8.7 81 1-84 24-110 (149)
4 4htu_A Ribonuclease H, RNAse H 99.6 6.4E-16 2.2E-20 96.5 7.3 79 2-82 27-111 (134)
5 1zbf_A Ribonuclease H-related 99.6 1.1E-15 3.6E-20 96.2 6.5 77 2-80 33-112 (142)
6 2qkb_A Ribonuclease H1, HS-RNA 99.3 3.8E-12 1.3E-16 80.1 7.8 70 13-84 41-123 (154)
7 3h08_A RNH (ribonuclease H); R 99.3 1.4E-12 4.7E-17 81.4 4.8 70 12-83 35-115 (146)
8 2kq2_A Ribonuclease H-related 99.2 2.7E-12 9.3E-17 80.5 1.7 60 18-80 47-107 (147)
9 2e4l_A Ribonuclease HI, RNAse 99.2 2.2E-11 7.4E-16 77.1 5.3 70 12-83 37-116 (158)
10 1ril_A Ribonuclease H; hydrola 99.2 2.6E-11 9E-16 77.4 4.5 70 12-83 39-119 (166)
11 1jl1_A Ribonuclease HI; RNAse 99.1 3.9E-11 1.3E-15 75.7 4.6 70 12-83 35-114 (155)
12 3qio_A GAG-POL polyprotein; RN 99.1 7E-11 2.4E-15 74.4 5.6 65 16-84 44-118 (150)
13 2lsn_A Reverse transcriptase; 99.1 4.2E-10 1.5E-14 72.1 9.2 77 7-84 41-128 (165)
14 3p1g_A Xenotropic murine leuke 99.1 3.7E-10 1.3E-14 72.3 7.1 49 6-57 48-96 (165)
15 1mu2_A HIV-2 RT; HIV-2 reverse 98.9 1.7E-09 6E-14 79.5 4.8 60 15-82 467-526 (555)
16 2zd1_A Reverse transcriptase/r 98.8 2E-09 6.7E-14 79.3 4.0 42 16-61 471-512 (557)
17 3ugs_B Undecaprenyl pyrophosph 85.4 0.88 3E-05 30.2 3.6 49 1-50 12-60 (225)
18 3tue_A Tryparedoxin peroxidase 84.8 2.1 7.1E-05 28.0 5.2 39 2-40 152-190 (219)
19 3sbc_A Peroxiredoxin TSA1; alp 84.1 2.4 8E-05 27.7 5.2 40 2-41 148-187 (216)
20 2lsn_A Reverse transcriptase; 79.4 0.43 1.5E-05 29.9 0.3 23 17-39 48-70 (165)
21 2vqe_K 30S ribosomal protein S 75.9 9.4 0.00032 23.0 5.6 57 2-58 32-99 (129)
22 1xcc_A 1-Cys peroxiredoxin; un 75.0 5.3 0.00018 25.5 4.6 39 2-41 133-172 (220)
23 3a2v_A Probable peroxiredoxin; 74.7 5.8 0.0002 26.2 4.8 38 2-40 129-167 (249)
24 2v2g_A Peroxiredoxin 6; oxidor 74.5 5.5 0.00019 25.9 4.6 38 2-40 132-170 (233)
25 1prx_A HORF6; peroxiredoxin, h 73.2 5.9 0.0002 25.4 4.5 38 2-40 136-174 (224)
26 3r8n_K 30S ribosomal protein S 72.8 8 0.00027 22.9 4.6 47 2-48 22-74 (117)
27 3qpm_A Peroxiredoxin; oxidored 68.8 9.5 0.00033 24.6 4.8 39 1-40 172-211 (240)
28 2vg0_A Short-chain Z-isoprenyl 67.9 0.73 2.5E-05 30.5 -0.8 35 16-50 23-57 (227)
29 3tjj_A Peroxiredoxin-4; thiore 67.6 10 0.00035 24.9 4.7 39 1-40 186-225 (254)
30 1f75_A Undecaprenyl pyrophosph 67.5 0.98 3.3E-05 30.3 -0.3 32 19-50 43-74 (249)
31 3j20_M 30S ribosomal protein S 66.9 19 0.00065 21.9 5.9 46 2-47 30-82 (137)
32 2h01_A 2-Cys peroxiredoxin; th 65.2 17 0.00059 22.0 5.3 40 1-40 125-164 (192)
33 1uul_A Tryparedoxin peroxidase 64.3 14 0.00048 22.7 4.8 39 1-40 131-170 (202)
34 4h8e_A Undecaprenyl pyrophosph 62.4 1.6 5.6E-05 29.4 0.1 35 16-50 44-78 (256)
35 2xzm_K RPS14E; ribosome, trans 59.4 23 0.00077 22.0 4.9 47 2-48 44-97 (151)
36 2i81_A 2-Cys peroxiredoxin; st 59.3 20 0.00068 22.5 4.9 38 1-39 146-184 (213)
37 3ztl_A Thioredoxin peroxidase; 57.9 18 0.00061 22.8 4.5 38 1-39 164-202 (222)
38 1n8j_A AHPC, alkyl hydroperoxi 57.4 25 0.00086 21.3 5.0 38 1-39 122-160 (186)
39 2pn8_A Peroxiredoxin-4; thiore 55.6 25 0.00084 22.0 4.8 38 1-39 143-181 (211)
40 2c0d_A Thioredoxin peroxidase 53.9 27 0.00094 22.1 4.9 39 1-40 150-189 (221)
41 1zof_A Alkyl hydroperoxide-red 51.3 29 0.001 21.0 4.6 40 1-41 127-167 (198)
42 4g2e_A Peroxiredoxin; redox pr 51.2 21 0.00072 21.0 3.8 32 2-33 124-156 (157)
43 3sgv_B Undecaprenyl pyrophosph 51.0 4.4 0.00015 27.3 0.6 36 15-50 36-71 (253)
44 3bbn_K Ribosomal protein S11; 48.4 12 0.0004 23.0 2.3 57 2-58 45-112 (140)
45 3drn_A Peroxiredoxin, bacterio 47.8 39 0.0013 19.6 5.1 38 1-38 115-152 (161)
46 1zye_A Thioredoxin-dependent p 47.8 21 0.00072 22.4 3.6 35 1-36 151-186 (220)
47 3qas_B Undecaprenyl pyrophosph 47.5 4.9 0.00017 27.0 0.5 33 18-50 39-71 (253)
48 1qmv_A Human thioredoxin perox 47.3 41 0.0014 20.3 4.8 37 1-38 129-166 (197)
49 2d2r_A Undecaprenyl pyrophosph 44.7 6.1 0.00021 26.4 0.6 33 18-50 37-69 (245)
50 3u5c_O RP59A, 40S ribosomal pr 43.3 31 0.001 21.0 3.6 47 2-48 30-83 (137)
51 2vg3_A Undecaprenyl pyrophosph 39.8 5.9 0.0002 27.1 -0.1 31 20-50 79-109 (284)
52 2z3g_A Blasticidin-S deaminase 39.0 31 0.0011 20.4 3.1 48 1-50 32-80 (130)
53 1we0_A Alkyl hydroperoxide red 38.3 44 0.0015 19.9 3.9 38 1-39 123-161 (187)
54 1uwz_A Cytidine deaminase; CDD 38.0 32 0.0011 20.6 3.0 47 1-49 29-78 (136)
55 2qnt_A AGR_C_3434P, uncharacte 36.2 25 0.00084 19.7 2.3 21 2-22 114-134 (141)
56 3gkn_A Bacterioferritin comigr 35.4 64 0.0022 18.5 4.3 32 1-33 129-160 (163)
57 2fr5_A Cytidine deaminase; tet 33.9 33 0.0011 20.8 2.7 48 1-50 41-91 (146)
58 1r5t_A Cytidine deaminase; zin 33.6 34 0.0012 20.6 2.7 49 2-51 38-89 (142)
59 2bmx_A Alkyl hydroperoxidase C 31.7 73 0.0025 19.1 4.1 33 1-34 136-169 (195)
60 3ixr_A Bacterioferritin comigr 31.2 81 0.0028 18.7 4.2 31 2-33 146-176 (179)
61 2hjj_A Hypothetical protein YK 28.9 29 0.00099 19.5 1.6 16 1-16 40-56 (87)
62 1xvw_A Hypothetical protein RV 28.4 51 0.0017 18.8 2.8 30 1-31 126-156 (160)
63 2v2f_A Penicillin binding prot 28.3 26 0.0009 14.6 1.2 11 1-11 8-18 (26)
64 3gl3_A Putative thiol:disulfid 27.9 80 0.0027 17.6 3.7 31 1-33 110-140 (152)
65 3itw_A Protein TIOX; bleomycin 27.0 41 0.0014 18.7 2.2 17 2-18 109-125 (137)
66 1psq_A Probable thiol peroxida 26.8 68 0.0023 18.6 3.2 10 2-11 131-140 (163)
67 3ira_A Conserved protein; meth 26.3 45 0.0015 20.6 2.4 38 1-38 109-147 (173)
68 1rw3_A POL polyprotein; RNA an 25.7 73 0.0025 22.3 3.6 45 7-51 370-420 (455)
69 2ph0_A Uncharacterized protein 24.9 85 0.0029 19.5 3.5 37 2-39 125-167 (174)
70 4gym_A Glyoxalase/bleomycin re 24.8 58 0.002 18.4 2.6 12 2-13 120-131 (149)
71 3m2o_A Glyoxalase/bleomycin re 23.5 49 0.0017 19.3 2.1 16 2-17 131-146 (164)
72 1jfu_A Thiol:disulfide interch 23.4 74 0.0025 18.7 3.0 31 1-33 148-178 (186)
73 1xzo_A BSSCO, hypothetical pro 23.2 87 0.003 18.0 3.2 30 1-32 140-169 (174)
74 2d30_A Cytidine deaminase; pur 22.9 65 0.0022 19.4 2.6 48 2-51 39-89 (141)
75 2jsy_A Probable thiol peroxida 22.3 97 0.0033 17.8 3.3 11 1-11 132-142 (167)
76 2b7k_A SCO1 protein; metalloch 21.7 1E+02 0.0034 18.7 3.4 10 2-11 150-159 (200)
77 3mpz_A Cytidine deaminase; ssg 20.2 89 0.003 19.1 2.8 49 2-51 52-102 (150)
No 1
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=99.80 E-value=1.6e-19 Score=111.59 Aligned_cols=83 Identities=33% Similarity=0.461 Sum_probs=75.6
Q ss_pred CeeCCC-CCEEE-eeeccCCCcchHHHHHHHHHHHHHHHhcCCceEEEecchHHHHHHHh-hhhhcCCChhHHHHHHHHH
Q 034727 1 MLRADD-GSLIY-NHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC-CWLMEDQTPGMAELCGEAK 77 (86)
Q Consensus 1 v~~~~~-g~~~~-~~~~~g~~tnn~aEy~Ali~gL~~a~~~~~~~v~i~~DS~lvi~q~~-~~~~~~k~~~l~~~~~~i~ 77 (86)
||++++ |.++. .+..++..|||.||+.|++.||+.+.++|.+++.|++||++|+++++ .|+ ++++.+.+++.+++
T Consensus 24 v~~~~~~~~~~~~~~~~~~~~tn~~aEl~A~~~aL~~a~~~~~~~v~i~tDS~~vv~~i~~~~~--~~~~~l~~~~~~i~ 101 (141)
T 3hst_B 24 VVWTADHSTVLAESKQAIGRATNNVAEYRGLIAGLDDAVKLGATEAAVLMDSKLVVEQMSGRWK--VKHPDLLKLYVQAQ 101 (141)
T ss_dssp EEEETTSCSEEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHTTSSC--CCSHHHHHHHHHHH
T ss_pred EEEeCCCCcEEEeeeccCCCCchHHHHHHHHHHHHHHHHHCCCceEEEEeChHHHHHHHhCCcc--cCCHHHHHHHHHHH
Confidence 467776 77776 88888999999999999999999999999999999999999999999 999 99999999999999
Q ss_pred HHhhccCC
Q 034727 78 RLKDKFLS 85 (86)
Q Consensus 78 ~l~~~f~~ 85 (86)
.+.++|..
T Consensus 102 ~l~~~~~~ 109 (141)
T 3hst_B 102 ALASQFRR 109 (141)
T ss_dssp HHHTTSSE
T ss_pred HHHhcCCe
Confidence 99988753
No 2
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=99.80 E-value=2e-19 Score=110.63 Aligned_cols=83 Identities=25% Similarity=0.329 Sum_probs=76.8
Q ss_pred CeeCCCCCEEE-eeeccCCCcchHHHHHHHHHHHHHHHhcCCc----eEEEecchHHHHHHHh-hhhhcCCChhHHHHHH
Q 034727 1 MLRADDGSLIY-NHNGVGITTNNVAKYGSLILGLKYALQKGFF----NFRVRGDSKLVHMQVC-CWLMEDQTPGMAELCG 74 (86)
Q Consensus 1 v~~~~~g~~~~-~~~~~g~~tnn~aEy~Ali~gL~~a~~~~~~----~v~i~~DS~lvi~q~~-~~~~~~k~~~l~~~~~ 74 (86)
|+++++|+.+. .+..++..|||.||+.|++.||+.+.+.+.+ ++.|++||++|+++++ .|+ ++++.+.+++.
T Consensus 24 v~~~~~g~~~~~~~~~~~~~tn~~aEl~A~~~aL~~a~~~~~~~~~~~v~i~tDS~~vi~~i~~~~~--~~~~~l~~~~~ 101 (140)
T 3u3g_D 24 VITDEKGNTLHESSAYIGETTNNVAEYEALIRALEDLQMFGDKLVDMEVEVRMDSELIVRQMQGVYK--VKEPTLKEKFA 101 (140)
T ss_dssp EEECTTSCEEEEEEEEEEEECHHHHHHHHHHHHHHHHGGGGGGGTTCEEEEEESCHHHHHHHTTSSC--CCCGGGHHHHH
T ss_pred EEEeCCCCEEEEEEeeCCCCchHHHHHHHHHHHHHHHHHcCCCCCCceEEEEeChHHHHHHhCCCcc--cCCHHHHHHHH
Confidence 47788999886 8888889999999999999999999999998 9999999999999999 998 89999999999
Q ss_pred HHHHH-hhccCC
Q 034727 75 EAKRL-KDKFLS 85 (86)
Q Consensus 75 ~i~~l-~~~f~~ 85 (86)
++..+ +++|..
T Consensus 102 ~i~~l~~~~~~~ 113 (140)
T 3u3g_D 102 KIAHIKMERVPN 113 (140)
T ss_dssp HHHHHHHHHCTT
T ss_pred HHHHHhhcCCCc
Confidence 99999 888754
No 3
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=99.76 E-value=2.6e-18 Score=107.68 Aligned_cols=81 Identities=28% Similarity=0.279 Sum_probs=73.3
Q ss_pred CeeCCCCCEEE-eeeccC----CCcchHHHHHHHHHHHHHHHhcCCceEEEecchHHHHHHHh-hhhhcCCChhHHHHHH
Q 034727 1 MLRADDGSLIY-NHNGVG----ITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC-CWLMEDQTPGMAELCG 74 (86)
Q Consensus 1 v~~~~~g~~~~-~~~~~g----~~tnn~aEy~Ali~gL~~a~~~~~~~v~i~~DS~lvi~q~~-~~~~~~k~~~l~~~~~ 74 (86)
||++ +|..+. .+...| ..|||.|||.|++.||+.+.++|.+++.+++||++|+++++ .|+ ++++.+++|++
T Consensus 24 vi~~-~g~~~~~~~~~~~~~~~~~tnn~aEl~A~~~aL~~a~~~g~~~v~i~tDS~~vi~~i~~~w~--~~~~~~~~l~~ 100 (149)
T 2ehg_A 24 VIYL-DNRKIEGYGLAEKPFSINSTNNVAEYSGLICLMETMLRLGISSPIIKGDSQLVIKQMNGEYK--VKAKRIIPLYE 100 (149)
T ss_dssp EEEC-SSCEEEEEEECSCTTCTTCCHHHHHHHHHHHHHHHHHHHTCCSCEEEESCHHHHHHHTTSSC--CCCTTHHHHHH
T ss_pred EEEE-CCEEEEEeccccCCCCCCccHHHHHHHHHHHHHHHHHHcCCCEEEEEeChHHHHHHHhCccc--cCCHHHHHHHH
Confidence 4677 788876 666666 89999999999999999999999999999999999999999 898 88899999999
Q ss_pred HHHHHhhccC
Q 034727 75 EAKRLKDKFL 84 (86)
Q Consensus 75 ~i~~l~~~f~ 84 (86)
++..++++|+
T Consensus 101 ~i~~l~~~~~ 110 (149)
T 2ehg_A 101 KAIELKKKLN 110 (149)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHhcCC
Confidence 9999999873
No 4
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A
Probab=99.64 E-value=6.4e-16 Score=96.50 Aligned_cols=79 Identities=18% Similarity=0.228 Sum_probs=58.2
Q ss_pred eeCCCCCEEEeeeccCCCcchHHHHHHHHHHHHHHHhcCCceEEEecchHHHHHHHh--hhhhc----CCChhHHHHHHH
Q 034727 2 LRADDGSLIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC--CWLME----DQTPGMAELCGE 75 (86)
Q Consensus 2 ~~~~~g~~~~~~~~~g~~tnn~aEy~Ali~gL~~a~~~~~~~v~i~~DS~lvi~q~~--~~~~~----~k~~~l~~~~~~ 75 (86)
+++ +|+.+..+.++|.+|||.|||.|++.||+.+.+.+.+ +.+++||++|+++++ .|+.+ +++..|-..+++
T Consensus 27 ~~~-~g~~~~~~g~~~~tTNN~aEl~A~i~aL~~l~~~~~~-v~i~tDSqyVi~wi~~~~~kt~~~~~vkN~dLw~~ld~ 104 (134)
T 4htu_A 27 DTK-TGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERNSR-KPIYSNSQTAIKWVKDKKAKSTLVRNEETALIWKLVDE 104 (134)
T ss_dssp ETT-TCCEEEEEEEEEEECHHHHHHHHHHHHHHHHHHTTCC-CCEEESCHHHHHHHHHTCCCCCCCCSSTTHHHHHHHHH
T ss_pred EEE-CCEEEEEecCCCCCchHHHHHHHHHHHHHHHHhCCCC-EEEEcchHHHHHHHHcCCcccCCCCCccCHHHHHHHHH
Confidence 444 6777775567889999999999999999999998876 899999999999998 45411 234444444444
Q ss_pred HHHHhhc
Q 034727 76 AKRLKDK 82 (86)
Q Consensus 76 i~~l~~~ 82 (86)
+..++..
T Consensus 105 ~~~~l~~ 111 (134)
T 4htu_A 105 AEEWLNT 111 (134)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 4454444
No 5
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=99.61 E-value=1.1e-15 Score=96.25 Aligned_cols=77 Identities=14% Similarity=0.177 Sum_probs=60.7
Q ss_pred eeCCCCCEEEeeeccCCCcchHHHHHHHHHHHHHHHhcCCceEEEecchHHHHHHHh-hhh-hc-CCChhHHHHHHHHHH
Q 034727 2 LRADDGSLIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC-CWL-ME-DQTPGMAELCGEAKR 78 (86)
Q Consensus 2 ~~~~~g~~~~~~~~~g~~tnn~aEy~Ali~gL~~a~~~~~~~v~i~~DS~lvi~q~~-~~~-~~-~k~~~l~~~~~~i~~ 78 (86)
|+ ++|+.+..+..++.+|||.|||.|++.||+.+.+.+. ++.|++||++|+++++ .|. .. .+....+.+++.+.+
T Consensus 33 l~-~~g~~~~~~~~~~~~TNN~aEl~A~i~aL~~~~~~~~-~v~i~tDS~~vi~w~~~~~~k~~~~~~v~n~dLw~~l~~ 110 (142)
T 1zbf_A 33 DT-KTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERNS-RKPIYSNSQTAIKWVKDKKAKSTLVRNEETALIWKLVDE 110 (142)
T ss_dssp ET-TTCCEEEECCCEEEECHHHHHHHHHHHHHHHHHHTTC-CCCEEESCHHHHHHHHHTCCCCCCCCSTTTHHHHHHHHH
T ss_pred EE-eCCEEEEEecccCCcCcHHHHHHHHHHHHHHHHhCCC-eEEEEEehHHHHHHHHcCCccCCCCCCcccHHHHHHHHH
Confidence 44 6788877666678899999999999999999999998 9999999999999999 883 00 112355667766655
Q ss_pred Hh
Q 034727 79 LK 80 (86)
Q Consensus 79 l~ 80 (86)
+.
T Consensus 111 ~~ 112 (142)
T 1zbf_A 111 AE 112 (142)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 6
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=99.35 E-value=3.8e-12 Score=80.10 Aligned_cols=70 Identities=14% Similarity=0.063 Sum_probs=57.0
Q ss_pred eecc-CCCcchHHHHHHHHHHHHHHHhcCCceEEEecchHHHHHHHhhh---------hhcCCC---hhHHHHHHHHHHH
Q 034727 13 HNGV-GITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCW---------LMEDQT---PGMAELCGEAKRL 79 (86)
Q Consensus 13 ~~~~-g~~tnn~aEy~Ali~gL~~a~~~~~~~v~i~~DS~lvi~q~~~~---------~~~~k~---~~l~~~~~~i~~l 79 (86)
+..+ |..|||.||+.|++.||+.+.+.+.+++.|++||++|+++++.| + +.+ ...+.++.++..+
T Consensus 41 ~~~l~~~~tn~~aEl~A~~~aL~~~~~~~~~~v~i~tDS~~vi~~i~~~~~~w~~~~w~--~~~~~~~~n~~l~~~i~~l 118 (154)
T 2qkb_A 41 GIRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTNSMFTINGITNWVQGWKKNGWK--TSAGKEVINKEDFVALERL 118 (154)
T ss_dssp EEECCSSCCHHHHHHHHHHHHHHHHHHTTCCEEEEEESCHHHHHHHHTHHHHHHTTTSB--CTTSSBCTTHHHHHHHHHH
T ss_pred EeecCCCCchHHHHHHHHHHHHHHHHhCCCceEEEEECcHHHHhhhhhhHHHHHhcccc--ccCCCccccHHHHHHHHHH
Confidence 3444 57999999999999999999999999999999999999999843 2 221 2457889999988
Q ss_pred hhccC
Q 034727 80 KDKFL 84 (86)
Q Consensus 80 ~~~f~ 84 (86)
+++|+
T Consensus 119 ~~~~~ 123 (154)
T 2qkb_A 119 TQGMD 123 (154)
T ss_dssp HTTCE
T ss_pred HcCCc
Confidence 87653
No 7
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=99.33 E-value=1.4e-12 Score=81.35 Aligned_cols=70 Identities=20% Similarity=0.131 Sum_probs=56.1
Q ss_pred eeeccCCCcchHHHHHHHHHHHHHHHhcCCceEEEecchHHHHHHHh-hhhhc----------CCChhHHHHHHHHHHHh
Q 034727 12 NHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC-CWLME----------DQTPGMAELCGEAKRLK 80 (86)
Q Consensus 12 ~~~~~g~~tnn~aEy~Ali~gL~~a~~~~~~~v~i~~DS~lvi~q~~-~~~~~----------~k~~~l~~~~~~i~~l~ 80 (86)
.+..++..|||.||+.|++.||+.+.+ .+++.|++||++|+++++ +|... -+....+.++.++..++
T Consensus 35 ~~~~~~~~Tnn~aEl~A~~~AL~~~~~--~~~v~I~tDS~~vi~~i~~~w~~~W~~~~w~~~~~~~v~n~~l~~~~~~~~ 112 (146)
T 3h08_A 35 ISGYDPATTNNRMELMAAIKGLEALKE--PARVQLYSDSAYLVNAMNEGWLKRWVKNGWKTAAKKPVENIDLWQEILKLT 112 (146)
T ss_dssp EEEEEEEECHHHHHHHHHHHHHHTCSS--CCEEEEEESCHHHHHHHHSSHHHHHHHTTCC----CCCTTHHHHHHHHHHH
T ss_pred eecCCCCCcHHHHHHHHHHHHHHhcCc--cCcEEEEeChHHHHHHHHHHHHHHHHHCCCccCCCCCcCCHHHHHHHHHHH
Confidence 666778899999999999999998876 589999999999999998 57200 01224578899998888
Q ss_pred hcc
Q 034727 81 DKF 83 (86)
Q Consensus 81 ~~f 83 (86)
++|
T Consensus 113 ~~~ 115 (146)
T 3h08_A 113 TLH 115 (146)
T ss_dssp HHS
T ss_pred hhC
Confidence 765
No 8
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=99.21 E-value=2.7e-12 Score=80.52 Aligned_cols=60 Identities=13% Similarity=0.144 Sum_probs=51.9
Q ss_pred CCcchHHHHHHHHHHHHHHHhcCCceEEEecchHHHHHHHh-hhhhcCCChhHHHHHHHHHHHh
Q 034727 18 ITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC-CWLMEDQTPGMAELCGEAKRLK 80 (86)
Q Consensus 18 ~~tnn~aEy~Ali~gL~~a~~~~~~~v~i~~DS~lvi~q~~-~~~~~~k~~~l~~~~~~i~~l~ 80 (86)
..|||.||+.|++.||+.+.+.+. ++.|++||+.|.+++. .|+ ++++..+.+.+.++.+.
T Consensus 47 ~~tNn~aEl~A~~~AL~~a~~~~~-~v~I~tDS~~i~~w~~~~w~--~~~~~~~~~~~l~~~l~ 107 (147)
T 2kq2_A 47 TMRNVAGEIAAALYAVKKASQLGV-KIRILHDYAGIAFWATGEWK--AKNEFTQAYAKLMNQYR 107 (147)
T ss_dssp GTCTTHHHHHHHHHHHHHHHHHTC-CCCBSSCCSTHHHHTTSSSS--CCHHHHHHHHCGGGGGS
T ss_pred cccHHHHHHHHHHHHHHHHHHCCC-eEEEEECcHHHHHHHhCCCc--cCCcchHHHHHHHHHhc
Confidence 479999999999999999999998 9999999999999999 998 77777777766655543
No 9
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=99.20 E-value=2.2e-11 Score=77.14 Aligned_cols=70 Identities=19% Similarity=0.256 Sum_probs=52.7
Q ss_pred eeeccCCCcchHHHHHHHHHHHHHHHhcCCceEEEecchHHHHHHHhhh----h---hcCC--Ch-hHHHHHHHHHHHhh
Q 034727 12 NHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCW----L---MEDQ--TP-GMAELCGEAKRLKD 81 (86)
Q Consensus 12 ~~~~~g~~tnn~aEy~Ali~gL~~a~~~~~~~v~i~~DS~lvi~q~~~~----~---~~~k--~~-~l~~~~~~i~~l~~ 81 (86)
.+..++..|||.||+.|++.||+.+.+. +++.|++||++|+++++.| + .++. .| ..+.++.++..+++
T Consensus 37 ~~~~~~~~tn~~aEl~A~~~AL~~~~~~--~~v~I~tDS~~vi~~i~~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~ 114 (158)
T 2e4l_A 37 MSDGFSLTTNNRMELLAPIVALEALKEP--CKIILTSDSQYMRQGIMTWIHGWKKKGWMTSNRTPVKNVDLWKRLDKAAQ 114 (158)
T ss_dssp EEEEEEEECHHHHHHHHHHHHHHTCSSC--CEEEEEECCHHHHHHHHTHHHHHHHTTTBCTTSSBCTTHHHHHHHHHHHT
T ss_pred EecCcCCCccHHHHHHHHHHHHHHhccC--CeEEEEeCHHHHHHHHHHHHHHHHHccccccCCCcccCHHHHHHHHHHHc
Confidence 5566678999999999999999987543 8999999999999999853 1 0011 11 34677888888776
Q ss_pred cc
Q 034727 82 KF 83 (86)
Q Consensus 82 ~f 83 (86)
++
T Consensus 115 ~~ 116 (158)
T 2e4l_A 115 LH 116 (158)
T ss_dssp TS
T ss_pred cC
Confidence 54
No 10
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=99.16 E-value=2.6e-11 Score=77.41 Aligned_cols=70 Identities=20% Similarity=0.153 Sum_probs=52.6
Q ss_pred eeeccCCCcchHHHHHHHHHHHHHHHhcCCceEEEecchHHHHHHHh-hhhhc-------CCC---hhHHHHHHHHHHHh
Q 034727 12 NHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVC-CWLME-------DQT---PGMAELCGEAKRLK 80 (86)
Q Consensus 12 ~~~~~g~~tnn~aEy~Ali~gL~~a~~~~~~~v~i~~DS~lvi~q~~-~~~~~-------~k~---~~l~~~~~~i~~l~ 80 (86)
.+...+..|||.||+.|++.||+.+.+. .++.|++||++|+++++ .|... +.+ ...+.++.++..++
T Consensus 39 ~~~~~~~~Tnn~aEl~Ai~~AL~~~~~~--~~v~I~tDS~~vi~~i~~~w~~~W~~~~w~~~~g~~v~n~~l~~~i~~l~ 116 (166)
T 1ril_A 39 LSGGEACTTNNRMELKAAIEGLKALKEP--CEVDLYTDSHYLKKAFTEGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAM 116 (166)
T ss_dssp ECCEEEEECHHHHHHHHHHHHHHSCCSC--CEEEEECCCHHHHHHHHSSHHHHHHHTTSBCTTSSBCTTHHHHHHHHHHH
T ss_pred EecCCCCCcHHHHHHHHHHHHHHHhccC--CeEEEEeChHHHHHHHhhhHHHHHHhcccccccCCccCcHHHHHHHHHHH
Confidence 4444568899999999999999987664 48999999999999999 44200 211 13467888888887
Q ss_pred hcc
Q 034727 81 DKF 83 (86)
Q Consensus 81 ~~f 83 (86)
+++
T Consensus 117 ~~~ 119 (166)
T 1ril_A 117 APH 119 (166)
T ss_dssp TTS
T ss_pred hcC
Confidence 764
No 11
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=99.14 E-value=3.9e-11 Score=75.66 Aligned_cols=70 Identities=19% Similarity=0.191 Sum_probs=52.9
Q ss_pred eeeccCCCcchHHHHHHHHHHHHHHHhcCCceEEEecchHHHHHHHhhh----hh---cCC--Ch-hHHHHHHHHHHHhh
Q 034727 12 NHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCW----LM---EDQ--TP-GMAELCGEAKRLKD 81 (86)
Q Consensus 12 ~~~~~g~~tnn~aEy~Ali~gL~~a~~~~~~~v~i~~DS~lvi~q~~~~----~~---~~k--~~-~l~~~~~~i~~l~~ 81 (86)
.+..++..|||.||+.|++.||+.+.+. .++.|++||++|+++++.| +. ++. .| ..+.++.++..+++
T Consensus 35 ~~~~~~~~tn~~aEl~A~~~aL~~~~~~--~~v~I~tDS~~vi~~i~~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~ 112 (155)
T 1jl1_A 35 FSAGYTRTTNNRMELMAAIVALEALKEH--AEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALG 112 (155)
T ss_dssp EEEEEEEECHHHHHHHHHHHHHHTCCSC--CEEEEEECCHHHHHHHHTTHHHHHHTTTBCTTSCBCTTHHHHHHHHHHTT
T ss_pred EecCCCCCcHHHHHHHHHHHHHHHhCcC--CcEEEEeCHHHHHHHHHHHHHHHhhcccccccCCccCCHHHHHHHHHHHc
Confidence 5555678999999999999999988763 8999999999999999853 10 011 12 23678888888776
Q ss_pred cc
Q 034727 82 KF 83 (86)
Q Consensus 82 ~f 83 (86)
++
T Consensus 113 ~~ 114 (155)
T 1jl1_A 113 QH 114 (155)
T ss_dssp TC
T ss_pred cC
Confidence 53
No 12
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=99.14 E-value=7e-11 Score=74.45 Aligned_cols=65 Identities=18% Similarity=0.192 Sum_probs=47.2
Q ss_pred cCCCcchHHHHHHHHHHHHHHHhcCCceEEEecchHHHHHHHhhh---------hhcCCC-hhHHHHHHHHHHHhhccC
Q 034727 16 VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCW---------LMEDQT-PGMAELCGEAKRLKDKFL 84 (86)
Q Consensus 16 ~g~~tnn~aEy~Ali~gL~~a~~~~~~~v~i~~DS~lvi~q~~~~---------~~~~k~-~~l~~~~~~i~~l~~~f~ 84 (86)
++.+|||.||+.|++.||+.+ + .++.|++||++|+++++.| +..... ...++++.++..++.++.
T Consensus 44 ~~~~Tnn~aEl~A~i~AL~~~---~-~~v~i~tDS~~v~~~i~~w~~~W~~~gw~~~~g~~v~n~~l~~~l~~~l~~~~ 118 (150)
T 3qio_A 44 LTDTTNQKTELQAIYLALQDS---G-LEVNIVTDSQYALGIITQWIHNWKKRGWKTADKKPVKNVDLVNQIIEQLIKKE 118 (150)
T ss_dssp ESSCCHHHHHHHHHHHHHHHS---C-SEEEEEESCHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHTTCS
T ss_pred CCCCCHHHHHHHHHHHHHHhC---C-CcEEEEeCcHHHHHHHHHHHHHHhhcCcCcCcCcccccHHHHHHHHHHHhhcC
Confidence 578999999999999999874 3 8999999999999999844 100111 144678888776555543
No 13
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=99.13 E-value=4.2e-10 Score=72.05 Aligned_cols=77 Identities=14% Similarity=-0.055 Sum_probs=55.9
Q ss_pred CCEEE-eeeccCCCcchHHHHHHHHHHHHHHHhcCCceEEEecchHHHHHHHhhh----h-----hcCCCh-hHHHHHHH
Q 034727 7 GSLIY-NHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCW----L-----MEDQTP-GMAELCGE 75 (86)
Q Consensus 7 g~~~~-~~~~~g~~tnn~aEy~Ali~gL~~a~~~~~~~v~i~~DS~lvi~q~~~~----~-----~~~k~~-~l~~~~~~ 75 (86)
.+... .....+..||+.||+.||..+|+.+++.+ .+|.|+|||++|+++++.| + ...+.| ..+.|+.+
T Consensus 41 ~~~~~~~~~~tnn~te~~Aei~Al~~al~~al~~~-~~v~I~TDS~Yvi~~it~w~~~Wk~ngw~~~~~~pVkN~dL~~~ 119 (165)
T 2lsn_A 41 YQVLNQWSIPLGNHTAQMAEIAAVEFACKKALKIP-GPVLVITDSFYVAESANKELPYWKSNGFVNNKKKPLKHISKWKS 119 (165)
T ss_dssp CCEEEEEEEEESSCCHHHHHHHHHHHHHHHHHHSS-SCEEEEESCHHHHHHHHTHHHHHHHTTSCSCSSSCCSSHHHHHH
T ss_pred cEEeccccCCchHHHHHHHHHHHHHHHHHHHhcCC-CeEEEEeChHHHHhhhhhhhhhheeccccccCCCcccCHHHHHH
Confidence 33344 55566789999999999999999998877 4799999999999999743 2 001112 34678888
Q ss_pred HHHHhhccC
Q 034727 76 AKRLKDKFL 84 (86)
Q Consensus 76 i~~l~~~f~ 84 (86)
+..+++.+.
T Consensus 120 l~~~~~~~~ 128 (165)
T 2lsn_A 120 IAECLSMKP 128 (165)
T ss_dssp HHHHHHHCT
T ss_pred HHHHHhCCC
Confidence 887776553
No 14
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=99.08 E-value=3.7e-10 Score=72.28 Aligned_cols=49 Identities=20% Similarity=0.132 Sum_probs=41.2
Q ss_pred CCCEEEeeeccCCCcchHHHHHHHHHHHHHHHhcCCceEEEecchHHHHHHH
Q 034727 6 DGSLIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQV 57 (86)
Q Consensus 6 ~g~~~~~~~~~g~~tnn~aEy~Ali~gL~~a~~~~~~~v~i~~DS~lvi~q~ 57 (86)
+|+.+..+...+.+|||.||+.|++.||+.+ ...++.|++||++|++.+
T Consensus 48 ~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~---~~~~v~I~tDS~~vi~~i 96 (165)
T 3p1g_A 48 ETEVIWARALPAGTSAQRAELIALTQALKMA---EGKKLNVYTDSRYAFATA 96 (165)
T ss_dssp SSCEEEEEEECTTCCHHHHHHHHHHHHHHHT---BTSEEEEEECCHHHHHHH
T ss_pred CCEEEEEecCCCCCcHHHHHHHHHHHHHHHc---cCceEEEEEchHHHHhhh
Confidence 5565554444568899999999999999988 368999999999999988
No 15
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=98.87 E-value=1.7e-09 Score=79.53 Aligned_cols=60 Identities=17% Similarity=0.057 Sum_probs=46.7
Q ss_pred ccCCCcchHHHHHHHHHHHHHHHhcCCceEEEecchHHHHHHHhhhhhcCCChhHHHHHHHHHHHhhc
Q 034727 15 GVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWLMEDQTPGMAELCGEAKRLKDK 82 (86)
Q Consensus 15 ~~g~~tnn~aEy~Ali~gL~~a~~~~~~~v~i~~DS~lvi~q~~~~~~~~k~~~l~~~~~~i~~l~~~ 82 (86)
..+.+|||.|||.|++.||+. +..++.|+|||++|+++++.|. +. ..+++++++..++.+
T Consensus 467 ~~~~~TNn~aEl~A~i~aL~~----~~~~v~I~tDS~~v~~~i~~~~--~~--~~~~l~~~~~~~~~~ 526 (555)
T 1mu2_A 467 KLEQTTNQQAELEAFAMALTD----SGPKVNIIVDSQYVMGIVASQP--TE--SESKIVNQIIEEMIK 526 (555)
T ss_dssp EESSCCHHHHHHHHHHHHHHT----SCSEEEEEESCHHHHHHHHTCC--SE--ESCHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHc----CCCeEEEEEehHHHHHHHhccc--cc--ccHHHHHHHHHHhcc
Confidence 456899999999999999986 6789999999999999999774 22 224555566555443
No 16
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=98.83 E-value=2e-09 Score=79.28 Aligned_cols=42 Identities=17% Similarity=0.109 Sum_probs=38.4
Q ss_pred cCCCcchHHHHHHHHHHHHHHHhcCCceEEEecchHHHHHHHhhhh
Q 034727 16 VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSKLVHMQVCCWL 61 (86)
Q Consensus 16 ~g~~tnn~aEy~Ali~gL~~a~~~~~~~v~i~~DS~lvi~q~~~~~ 61 (86)
.+.+|||.|||.|++.||+.+ .+++.|+|||++|+++++.|.
T Consensus 471 ~~~~TNn~aEl~Ai~~aL~~~----~~~v~I~tDS~~vi~~i~~~~ 512 (557)
T 2zd1_A 471 LTNTTNQKTELQAIYLALQDS----GLEVNIVTDSQYALGIIQAQP 512 (557)
T ss_dssp ECSCCHHHHHHHHHHHHHHHS----CSEEEEEECCHHHHHHHTTCC
T ss_pred CCCCCHHHHHHHHHHHHHHhC----CCcEEEEeChHHHHHHHhcCC
Confidence 468999999999999999987 589999999999999999665
No 17
>3ugs_B Undecaprenyl pyrophosphate synthase; niaid, csgid, structural genomics, center for structural GEN infectious diseases; HET: FFT; 2.46A {Campylobacter jejuni} SCOP: c.101.1.0
Probab=85.44 E-value=0.88 Score=30.19 Aligned_cols=49 Identities=6% Similarity=0.003 Sum_probs=30.9
Q ss_pred CeeCCCCCEEEeeeccCCCcchHHHHHHHHHHHHHHHhcCCceEEEecch
Q 034727 1 MLRADDGSLIYNHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDS 50 (86)
Q Consensus 1 v~~~~~g~~~~~~~~~g~~tnn~aEy~Ali~gL~~a~~~~~~~v~i~~DS 50 (86)
+|.|.||++-. ...++....+.+...++..-++.|.++|++.+++|.=|
T Consensus 12 iIMDGNrRwAk-~rgl~r~~GH~~G~~~~~~i~~~c~~lGI~~lTlYaFS 60 (225)
T 3ugs_B 12 VVMDGNRRWAR-AKGFLAKLGYSQGVKTMQKLMEVCMEENISNLSLFAFS 60 (225)
T ss_dssp EEECCCC---------------CHHHHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred EeccCcHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEc
Confidence 36677777643 34566778899999999999999999999999999876
No 18
>3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A
Probab=84.84 E-value=2.1 Score=28.05 Aligned_cols=39 Identities=13% Similarity=0.080 Sum_probs=30.1
Q ss_pred eeCCCCCEEEeeeccCCCcchHHHHHHHHHHHHHHHhcC
Q 034727 2 LRADDGSLIYNHNGVGITTNNVAKYGSLILGLKYALQKG 40 (86)
Q Consensus 2 ~~~~~g~~~~~~~~~g~~tnn~aEy~Ali~gL~~a~~~~ 40 (86)
|+||+|.+.....+--....|..|..-.+++|+...++|
T Consensus 152 iIDp~g~Ir~~~~~~~~~gr~~~EvLr~l~aLQ~~~~~~ 190 (219)
T 3tue_A 152 IIDPHGMLRQITVNDMPVGRSVEEVLRLLEAFQFVEKHG 190 (219)
T ss_dssp EECTTSBEEEEEEECTTCCCCHHHHHHHHHHHHHHHHC-
T ss_pred EECCCCeEEEEEEecCCCCCCHHHHHHHHHHhhhHHhcC
Confidence 789999988744333355568999999999999998876
No 19
>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}
Probab=84.13 E-value=2.4 Score=27.72 Aligned_cols=40 Identities=13% Similarity=0.040 Sum_probs=30.2
Q ss_pred eeCCCCCEEEeeeccCCCcchHHHHHHHHHHHHHHHhcCC
Q 034727 2 LRADDGSLIYNHNGVGITTNNVAKYGSLILGLKYALQKGF 41 (86)
Q Consensus 2 ~~~~~g~~~~~~~~~g~~tnn~aEy~Ali~gL~~a~~~~~ 41 (86)
|.||+|.+.+...+--...-|..|...++++|+...++|.
T Consensus 148 iID~~G~Ir~~~v~~~~~grn~dEiLr~l~AlQ~~~~~~~ 187 (216)
T 3sbc_A 148 IIDPKGVIRHITINDLPVGRNVDEALRLVEAFQWTDKNGT 187 (216)
T ss_dssp EECTTSBEEEEEEECTTBCCCHHHHHHHHHHHHHHHHHCC
T ss_pred EECCCCeEEEEEEcCCCCCCCHHHHHHHHHHhhhHhhcCC
Confidence 7899998887333322345589999999999999888763
No 20
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=79.42 E-value=0.43 Score=29.91 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=20.1
Q ss_pred CCCcchHHHHHHHHHHHHHHHhc
Q 034727 17 GITTNNVAKYGSLILGLKYALQK 39 (86)
Q Consensus 17 g~~tnn~aEy~Ali~gL~~a~~~ 39 (86)
+..|||.+|..|.|.||+.+++.
T Consensus 48 ~~~tnn~te~~Aei~Al~~al~~ 70 (165)
T 2lsn_A 48 SIPLGNHTAQMAEIAAVEFACKK 70 (165)
T ss_dssp EEEESSCCHHHHHHHHHHHHHHH
T ss_pred cCCchHHHHHHHHHHHHHHHHHH
Confidence 35799999999999999988874
No 21
>2vqe_K 30S ribosomal protein S11, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.55.4.1 PDB: 1gix_N* 1hnw_K* 1hnx_K* 1hnz_K* 1hr0_K 1ibk_K* 1ibl_K* 1ibm_K 1j5e_K 1jgo_N* 1jgp_N* 1jgq_N* 1ml5_N* 1n32_K* 1n33_K* 1n34_K 1n36_K 1xmo_K* 1xmq_K* 1xnq_K* ...
Probab=75.90 E-value=9.4 Score=23.01 Aligned_cols=57 Identities=16% Similarity=0.078 Sum_probs=38.1
Q ss_pred eeCCCCCEEE-ee-eccC----CCcchHHHHHHHHHHHHHHHhcCCceEEEec-----chHHHHHHHh
Q 034727 2 LRADDGSLIY-NH-NGVG----ITTNNVAKYGSLILGLKYALQKGFFNFRVRG-----DSKLVHMQVC 58 (86)
Q Consensus 2 ~~~~~g~~~~-~~-~~~g----~~tnn~aEy~Ali~gL~~a~~~~~~~v~i~~-----DS~lvi~q~~ 58 (86)
|.|++|.++. .+ ..+| ......|-+.|.....+.|.++|++.+.+.- -.+.+++.+.
T Consensus 32 iTd~~G~~~~~~SaG~~gfKg~rk~tp~AA~~aa~~~~~~~~~~Gi~~v~V~vkG~G~Gre~airaL~ 99 (129)
T 2vqe_K 32 ITDPDGNPITWSSGGVIGYKGSRKGTPYAAQLAALDAAKKAMAYGMQSVDVIVRGTGAGREQAIRALQ 99 (129)
T ss_dssp EECTTSCEEEECCTTTTTCCSGGGGSHHHHHHHHHHHHHHHHTTTCCEEEEEEESCCTTHHHHHHHHH
T ss_pred EEcCCCCEEEEEeccceeEcCCCcCCHHHHHHHHHHHHHHHHHhCCeEEEEEEECCCCCHHHHHHHHH
Confidence 5678898886 33 3344 2334466666667778888999998887765 3466666664
No 22
>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A
Probab=75.03 E-value=5.3 Score=25.53 Aligned_cols=39 Identities=8% Similarity=0.006 Sum_probs=28.8
Q ss_pred eeCCCCCEEE-eeeccCCCcchHHHHHHHHHHHHHHHhcCC
Q 034727 2 LRADDGSLIY-NHNGVGITTNNVAKYGSLILGLKYALQKGF 41 (86)
Q Consensus 2 ~~~~~g~~~~-~~~~~g~~tnn~aEy~Ali~gL~~a~~~~~ 41 (86)
|.|++|.++. ...... ..-|..|....+.+|+...++|+
T Consensus 133 lID~~G~I~~~~~~~~~-~g~~~~ell~~i~~lq~~~~~~~ 172 (220)
T 1xcc_A 133 FISPEKKIKATVLYPAT-TGRNAHEILRVLKSLQLTYTTPV 172 (220)
T ss_dssp EECTTSBEEEEEEECTT-BCCCHHHHHHHHHHHHHHHHSSE
T ss_pred EECCCCEEEEEEecCCC-CCCCHHHHHHHHHHHHhhhcCCc
Confidence 7899999987 433332 22378899999999998877653
No 23
>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A
Probab=74.74 E-value=5.8 Score=26.19 Aligned_cols=38 Identities=11% Similarity=-0.037 Sum_probs=27.7
Q ss_pred eeCCCCCEEE-eeeccCCCcchHHHHHHHHHHHHHHHhcC
Q 034727 2 LRADDGSLIY-NHNGVGITTNNVAKYGSLILGLKYALQKG 40 (86)
Q Consensus 2 ~~~~~g~~~~-~~~~~g~~tnn~aEy~Ali~gL~~a~~~~ 40 (86)
|.|++|.++. .....+ ...|..|...++.+|+...++|
T Consensus 129 IID~dG~I~~~~~~~~~-~gr~~~Ellr~I~alq~~~~~~ 167 (249)
T 3a2v_A 129 IVDARGVIRTMLYYPME-LGRLVDEILRIVKALKLGDSLK 167 (249)
T ss_dssp EECTTSBEEEEEEECTT-BCCCHHHHHHHHHHHHHHHHHT
T ss_pred EECCCCeEEEEEecCCc-ccchhHHHHHHHHHHHhccccC
Confidence 7899999987 333332 2347899999999999876543
No 24
>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A
Probab=74.48 E-value=5.5 Score=25.87 Aligned_cols=38 Identities=21% Similarity=0.104 Sum_probs=27.9
Q ss_pred eeCCCCCEEE-eeeccCCCcchHHHHHHHHHHHHHHHhcC
Q 034727 2 LRADDGSLIY-NHNGVGITTNNVAKYGSLILGLKYALQKG 40 (86)
Q Consensus 2 ~~~~~g~~~~-~~~~~g~~tnn~aEy~Ali~gL~~a~~~~ 40 (86)
|.|++|.++. ...... ...|..|....+.+|+...+.+
T Consensus 132 iID~~G~I~~~~~~~~~-~gr~~~eilr~l~~Lq~~~~~~ 170 (233)
T 2v2g_A 132 IIGPDKKLKLSILYPAT-TGRNFSEILRVIDSLQLTAQKK 170 (233)
T ss_dssp EECTTSBEEEEEEECTT-BCCCHHHHHHHHHHHHHHHHSS
T ss_pred EECCCCEEEEEEecCCC-CCCCHHHHHHHHHHHHhhccCC
Confidence 7899999987 433332 2236889999999999877654
No 25
>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10
Probab=73.18 E-value=5.9 Score=25.37 Aligned_cols=38 Identities=16% Similarity=0.120 Sum_probs=27.7
Q ss_pred eeCCCCCEEE-eeeccCCCcchHHHHHHHHHHHHHHHhcC
Q 034727 2 LRADDGSLIY-NHNGVGITTNNVAKYGSLILGLKYALQKG 40 (86)
Q Consensus 2 ~~~~~g~~~~-~~~~~g~~tnn~aEy~Ali~gL~~a~~~~ 40 (86)
|.|++|.++. ...... ...|..|....+.+|+...+++
T Consensus 136 iID~~G~I~~~~~~~~~-~gr~~~eil~~i~~l~~~~~~~ 174 (224)
T 1prx_A 136 VFGPDKKLKLSILYPAT-TGRNFDEILRVVISLQLTAEKR 174 (224)
T ss_dssp EECTTSBEEEEEECCTT-BCCCHHHHHHHHHHHHHHHHHC
T ss_pred EECCCCEEEEEEecCCC-CCCCHHHHHHHHHHHHhhccCC
Confidence 7899999987 433332 2236899999999999877654
No 26
>3r8n_K 30S ribosomal protein S11; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_K 3fih_K* 3iy8_K 3j18_K* 2wwl_K 3oar_K 3oaq_K 3ofb_K 3ofa_K 3ofp_K 3ofx_K 3ofy_K 3ofo_K 3r8o_K 4a2i_K 4gd1_K 4gd2_K 3i1m_K 1vs7_K* 3e1a_C ...
Probab=72.77 E-value=8 Score=22.91 Aligned_cols=47 Identities=15% Similarity=0.091 Sum_probs=31.4
Q ss_pred eeCCCCCEEE-ee-eccC----CCcchHHHHHHHHHHHHHHHhcCCceEEEec
Q 034727 2 LRADDGSLIY-NH-NGVG----ITTNNVAKYGSLILGLKYALQKGFFNFRVRG 48 (86)
Q Consensus 2 ~~~~~g~~~~-~~-~~~g----~~tnn~aEy~Ali~gL~~a~~~~~~~v~i~~ 48 (86)
|.|++|.++. .+ ..+| ......|-+.|.....+.|.++|++.+.+.-
T Consensus 22 iTD~~G~~i~~~S~G~~gfKg~rk~tp~AA~~aa~~~~~~~~~~Gi~~v~v~v 74 (117)
T 3r8n_K 22 ITDRQGNALGWATAGGSGFRGSRKSTPFAAQVAAERCADAVKEYGIKNLEVMV 74 (117)
T ss_dssp EECTTSCCSEEEETGGGSCCGGGGSSHHHHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred EEcCCCCEEEEEcCCccccCCCccCCHHHHHHHHHHHHHHHHHhCCcEEEEEE
Confidence 5678888775 33 3344 2233455566667778889999999887754
No 27
>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}
Probab=68.80 E-value=9.5 Score=24.63 Aligned_cols=39 Identities=18% Similarity=0.285 Sum_probs=28.2
Q ss_pred CeeCCCCCEEE-eeeccCCCcchHHHHHHHHHHHHHHHhcC
Q 034727 1 MLRADDGSLIY-NHNGVGITTNNVAKYGSLILGLKYALQKG 40 (86)
Q Consensus 1 v~~~~~g~~~~-~~~~~g~~tnn~aEy~Ali~gL~~a~~~~ 40 (86)
+|.|++|.++. ..... ....+..|...++.+|+...+.|
T Consensus 172 flID~~G~I~~~~~~~~-~~~~~~~eil~~l~~lq~~~~~~ 211 (240)
T 3qpm_A 172 FIIDEKGVLRQITMNDL-PVGRSVDETLRLVQAFQYTDKHG 211 (240)
T ss_dssp EEECTTSBEEEEEEECT-TBCCCHHHHHHHHHHHHHHHHHS
T ss_pred EEEcCCCeEEEEEecCC-CCCCCHHHHHHHHHHhhhhhhcC
Confidence 37899999987 43333 33446788999999998876654
No 28
>2vg0_A Short-chain Z-isoprenyl diphosphate synthetase; peptidoglycan synthesis, cell WALL biogenesis/degradation, secreted, cell shape; HET: GPP; 1.7A {Mycobacterium tuberculosis} PDB: 2vfw_A* 2vg1_A*
Probab=67.91 E-value=0.73 Score=30.46 Aligned_cols=35 Identities=11% Similarity=-0.059 Sum_probs=29.7
Q ss_pred cCCCcchHHHHHHHHHHHHHHHhcCCceEEEecch
Q 034727 16 VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDS 50 (86)
Q Consensus 16 ~g~~tnn~aEy~Ali~gL~~a~~~~~~~v~i~~DS 50 (86)
++....+.+...++..-++.|.++|++.+++|.-|
T Consensus 23 l~~~~GH~~G~~~l~~i~~~c~~~GI~~lTlYaFS 57 (227)
T 2vg0_A 23 DDVSYGYRMGAAKIAEMLRWCHEAGIELATVYLLS 57 (227)
T ss_dssp SCTHHHHHHHHHHHHHHHHHHHHHTCSEEEEEEEE
T ss_pred CchhHHHHHHHHHHHHHHHHHHHcCCCEEEEEeec
Confidence 44555677889999999999999999999999864
No 29
>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C
Probab=67.63 E-value=10 Score=24.86 Aligned_cols=39 Identities=21% Similarity=0.290 Sum_probs=28.7
Q ss_pred CeeCCCCCEEE-eeeccCCCcchHHHHHHHHHHHHHHHhcC
Q 034727 1 MLRADDGSLIY-NHNGVGITTNNVAKYGSLILGLKYALQKG 40 (86)
Q Consensus 1 v~~~~~g~~~~-~~~~~g~~tnn~aEy~Ali~gL~~a~~~~ 40 (86)
+|.|++|.++. ..... ....+..|...++.+|+...+.+
T Consensus 186 flID~~G~I~~~~~~~~-~~~~~~~eil~~L~alq~~~~~~ 225 (254)
T 3tjj_A 186 FIIDDKGILRQITLNDL-PVGRSVDETLRLVQAFQYTDKHG 225 (254)
T ss_dssp EEECTTSBEEEEEEECT-TCCCCHHHHHHHHHHHHHHHHHC
T ss_pred EEECCCCeEEEEEecCC-CCCCCHHHHHHHHHhhccccccC
Confidence 37899999987 33333 34456889999999999887765
No 30
>1f75_A Undecaprenyl pyrophosphate synthetase; parallel beta sheet, NEW fold for isoprenoid synthase, peptidoglycan synthesis, transferase; 2.20A {Micrococcus luteus} SCOP: c.101.1.1
Probab=67.54 E-value=0.98 Score=30.31 Aligned_cols=32 Identities=13% Similarity=0.026 Sum_probs=27.4
Q ss_pred CcchHHHHHHHHHHHHHHHhcCCceEEEecch
Q 034727 19 TTNNVAKYGSLILGLKYALQKGFFNFRVRGDS 50 (86)
Q Consensus 19 ~tnn~aEy~Ali~gL~~a~~~~~~~v~i~~DS 50 (86)
...+.+.+.++..-++.|.++|++.+++|.-|
T Consensus 43 ~~GH~~G~~~l~~iv~~c~~~GI~~lTlYaFS 74 (249)
T 1f75_A 43 IKGHYEGMQTVRKITRYASDLGVKYLTLYAFS 74 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCEEEEEEC-
T ss_pred hhhHHHHHHHHHHHHHHHHHcCCCEEEEEEec
Confidence 34577888999999999999999999999965
No 31
>3j20_M 30S ribosomal protein S11P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=66.88 E-value=19 Score=21.94 Aligned_cols=46 Identities=22% Similarity=0.168 Sum_probs=30.5
Q ss_pred eeCCCC-CEEE-eeec-cC----CCcchHHHHHHHHHHHHHHHhcCCceEEEe
Q 034727 2 LRADDG-SLIY-NHNG-VG----ITTNNVAKYGSLILGLKYALQKGFFNFRVR 47 (86)
Q Consensus 2 ~~~~~g-~~~~-~~~~-~g----~~tnn~aEy~Ali~gL~~a~~~~~~~v~i~ 47 (86)
|.|++| +++. .+.. .| ......|-..|.....+.|.++|++.+.|.
T Consensus 30 iTD~~G~~~i~~~S~G~~gfkg~~ksTp~AA~~aa~~~~~~a~e~Gi~~v~V~ 82 (137)
T 3j20_M 30 ITDITGAETISRWSGGMVVKADRDEPSPYAAMLAARRAAEEALEKGIVGVHIR 82 (137)
T ss_dssp EEESSSCSEEEEEEGGGTCSCTTTSSSHHHHHHHHHHHHHHHHHHTEEEEEEE
T ss_pred EEcCCCCEEEEEEccceeeecCCccCCHHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 567889 5775 4443 23 234456666666788888999999866543
No 32
>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10
Probab=65.22 E-value=17 Score=22.00 Aligned_cols=40 Identities=18% Similarity=0.015 Sum_probs=26.6
Q ss_pred CeeCCCCCEEEeeeccCCCcchHHHHHHHHHHHHHHHhcC
Q 034727 1 MLRADDGSLIYNHNGVGITTNNVAKYGSLILGLKYALQKG 40 (86)
Q Consensus 1 v~~~~~g~~~~~~~~~g~~tnn~aEy~Ali~gL~~a~~~~ 40 (86)
+|.|++|.++.....-.....+..|....+..|......+
T Consensus 125 ~liD~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~~~~~~~ 164 (192)
T 2h01_A 125 VLIDKQGVVQHLLVNNLALGRSVDEILRLIDALQHHEKYG 164 (192)
T ss_dssp EEECTTSBEEEEEEGGGSSGGGHHHHHHHHHHHHHHHHHC
T ss_pred EEEcCCCEEEEEEeCCCCCCCCHHHHHHHHHHHhhhhhcC
Confidence 3789999998732221123457888888888887665544
No 33
>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10
Probab=64.32 E-value=14 Score=22.70 Aligned_cols=39 Identities=13% Similarity=0.189 Sum_probs=26.4
Q ss_pred CeeCCCCCEEE-eeeccCCCcchHHHHHHHHHHHHHHHhcC
Q 034727 1 MLRADDGSLIY-NHNGVGITTNNVAKYGSLILGLKYALQKG 40 (86)
Q Consensus 1 v~~~~~g~~~~-~~~~~g~~tnn~aEy~Ali~gL~~a~~~~ 40 (86)
+|.|++|.++. ..... ....+..|....+.+|+...+.+
T Consensus 131 ~lid~~G~i~~~~~g~~-~~~~~~~ell~~l~~l~~~~~~~ 170 (202)
T 1uul_A 131 FIIDPKQNLRQITVNDL-PVGRDVDEALRLVKAFQFVEKHG 170 (202)
T ss_dssp EEECTTSBEEEEEEECT-TBCCCHHHHHHHHHHHHHHHHHS
T ss_pred EEECCCCEEEEEEeCCC-CCCCCHHHHHHHHHHhhhhhhcC
Confidence 37899999987 33222 22347788888889888665443
No 34
>4h8e_A Undecaprenyl pyrophosphate synthase; alpha-helix, prenyl transferase, cell WALL biosynthesis, FAR diphosphate binding; HET: FPP; 1.30A {Staphylococcus aureus subsp}
Probab=62.41 E-value=1.6 Score=29.41 Aligned_cols=35 Identities=9% Similarity=-0.067 Sum_probs=30.7
Q ss_pred cCCCcchHHHHHHHHHHHHHHHhcCCceEEEecch
Q 034727 16 VGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDS 50 (86)
Q Consensus 16 ~g~~tnn~aEy~Ali~gL~~a~~~~~~~v~i~~DS 50 (86)
++....+.+...++..-++.|.++|++.+++|..|
T Consensus 44 l~r~~GH~~G~~~~~~iv~~c~~lGI~~lTlYaFS 78 (256)
T 4h8e_A 44 MPRIKGHYEGMQTIKKITRIASDIGVKYLTLYAFS 78 (256)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEc
Confidence 44456788999999999999999999999999987
No 35
>2xzm_K RPS14E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_K 3j0o_K 3j0l_K 2zkq_k 3iz6_K 3jyv_K*
Probab=59.39 E-value=23 Score=21.97 Aligned_cols=47 Identities=9% Similarity=0.034 Sum_probs=31.1
Q ss_pred eeCCCCC-EEE-eeeccC-C----CcchHHHHHHHHHHHHHHHhcCCceEEEec
Q 034727 2 LRADDGS-LIY-NHNGVG-I----TTNNVAKYGSLILGLKYALQKGFFNFRVRG 48 (86)
Q Consensus 2 ~~~~~g~-~~~-~~~~~g-~----~tnn~aEy~Ali~gL~~a~~~~~~~v~i~~ 48 (86)
|.|.+|. .++ .+..++ . .....|-..|.....+.|.++|++.+.|.-
T Consensus 44 iTD~~G~~~~~~ssgg~~~k~~r~ksTpyAAq~aa~~~a~~a~e~Gi~~v~V~v 97 (151)
T 2xzm_K 44 VTDLSGRETLVRVTGGMKVKADREESSPYAAMQAAIDVVNRCKELKINALHIKL 97 (151)
T ss_dssp EECTTCCSEEEECCHHHHCSSGGGGSCHHHHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred EECCCCCEEEEEecCcceEeCCCCcCCHHHHHHHHHHHHHHHHHcCCeEEEEEE
Confidence 5678886 555 444332 1 344566667777788889999998776654
No 36
>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A
Probab=59.25 E-value=20 Score=22.46 Aligned_cols=38 Identities=13% Similarity=0.042 Sum_probs=25.7
Q ss_pred CeeCCCCCEEE-eeeccCCCcchHHHHHHHHHHHHHHHhc
Q 034727 1 MLRADDGSLIY-NHNGVGITTNNVAKYGSLILGLKYALQK 39 (86)
Q Consensus 1 v~~~~~g~~~~-~~~~~g~~tnn~aEy~Ali~gL~~a~~~ 39 (86)
+|.|++|.++. ..... ....+..|....+.+|+.....
T Consensus 146 ~lID~~G~i~~~~~~~~-~~~~~~~ell~~l~~l~~~~~~ 184 (213)
T 2i81_A 146 VLIDMNGIVQHLLVNNL-AIGRSVDEILRIIDAIQHHEKY 184 (213)
T ss_dssp EEECTTSBEEEEEEECT-TCCCCHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCEEEEEEecCC-CCCCCHHHHHHHHHHHHhhhhc
Confidence 37899999987 32222 2234788888888888765543
No 37
>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D
Probab=57.86 E-value=18 Score=22.76 Aligned_cols=38 Identities=13% Similarity=0.142 Sum_probs=26.4
Q ss_pred CeeCCCCCEEE-eeeccCCCcchHHHHHHHHHHHHHHHhc
Q 034727 1 MLRADDGSLIY-NHNGVGITTNNVAKYGSLILGLKYALQK 39 (86)
Q Consensus 1 v~~~~~g~~~~-~~~~~g~~tnn~aEy~Ali~gL~~a~~~ 39 (86)
+|.|++|.++. ...... ...+..|....+.+|+.....
T Consensus 164 ~lID~~G~I~~~~~g~~~-~~~~~~~il~~l~~l~~~~~~ 202 (222)
T 3ztl_A 164 FIIDPNGILRQITINDKP-VGRSVDETLRLLDAFQFVEKH 202 (222)
T ss_dssp EEECTTSEEEEEEEECTT-BCCCHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCeEEEEEecCCC-CCCCHHHHHHHHHHhhccccc
Confidence 47899999987 433333 334578888888888877554
No 38
>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A
Probab=57.36 E-value=25 Score=21.32 Aligned_cols=38 Identities=8% Similarity=0.037 Sum_probs=25.7
Q ss_pred CeeCCCCCEEE-eeeccCCCcchHHHHHHHHHHHHHHHhc
Q 034727 1 MLRADDGSLIY-NHNGVGITTNNVAKYGSLILGLKYALQK 39 (86)
Q Consensus 1 v~~~~~g~~~~-~~~~~g~~tnn~aEy~Ali~gL~~a~~~ 39 (86)
+|.|++|.++. ..... ....+..|..+.+..|....++
T Consensus 122 ~lID~~G~i~~~~~~~~-~~~~~~~~l~~~l~~l~~~~~~ 160 (186)
T 1n8j_A 122 FVVDPQGIIQAIEVTAE-GIGRDASDLLRKIKAAQYVAAH 160 (186)
T ss_dssp EEECTTSBEEEEEEECT-TBCCCHHHHHHHHHHHHHHHHS
T ss_pred EEECCCCeEEEEEecCC-CCCCCHHHHHHHHHHHHHHhhc
Confidence 37899999987 43322 2223577888888888776655
No 39
>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}
Probab=55.62 E-value=25 Score=22.00 Aligned_cols=38 Identities=18% Similarity=0.240 Sum_probs=25.4
Q ss_pred CeeCCCCCEEE-eeeccCCCcchHHHHHHHHHHHHHHHhc
Q 034727 1 MLRADDGSLIY-NHNGVGITTNNVAKYGSLILGLKYALQK 39 (86)
Q Consensus 1 v~~~~~g~~~~-~~~~~g~~tnn~aEy~Ali~gL~~a~~~ 39 (86)
+|.|++|.++. ..... ....+..|....+.+|+.....
T Consensus 143 ~lID~~G~I~~~~~g~~-~~~~~~~ell~~l~~l~~~~~~ 181 (211)
T 2pn8_A 143 FIIDDKGILRQITLNDL-PVGRSVDETLRLVQAFQYTDKH 181 (211)
T ss_dssp EEECTTSBEEEEEEECT-TBCCCHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCEEEEEEecCC-CCCCCHHHHHHHHHHhhhcccC
Confidence 37899999987 33322 2224678888888888765443
No 40
>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}
Probab=53.87 E-value=27 Score=22.09 Aligned_cols=39 Identities=15% Similarity=0.100 Sum_probs=26.7
Q ss_pred CeeCCCCCEEE-eeeccCCCcchHHHHHHHHHHHHHHHhcC
Q 034727 1 MLRADDGSLIY-NHNGVGITTNNVAKYGSLILGLKYALQKG 40 (86)
Q Consensus 1 v~~~~~g~~~~-~~~~~g~~tnn~aEy~Ali~gL~~a~~~~ 40 (86)
+|.|++|.++. ..... ....+..|..+.+..|....+.+
T Consensus 150 ~lID~~G~I~~~~~g~~-~~~~~~~ell~~l~~L~~~~~~~ 189 (221)
T 2c0d_A 150 FIIDKNGCVRHQTVNDL-PIGRNVQEVLRTIDSIIHVDTSG 189 (221)
T ss_dssp EEECTTSBEEEEEEECT-TCCCCHHHHHHHHHHHHHHHHHC
T ss_pred EEECCCCeEEEEEecCC-CCCCCHHHHHHHHHHHhhhhcCC
Confidence 37899999987 43333 22346788888888887665544
No 41
>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10
Probab=51.29 E-value=29 Score=21.01 Aligned_cols=40 Identities=13% Similarity=-0.006 Sum_probs=27.5
Q ss_pred CeeCCCCCEEE-eeeccCCCcchHHHHHHHHHHHHHHHhcCC
Q 034727 1 MLRADDGSLIY-NHNGVGITTNNVAKYGSLILGLKYALQKGF 41 (86)
Q Consensus 1 v~~~~~g~~~~-~~~~~g~~tnn~aEy~Ali~gL~~a~~~~~ 41 (86)
+|.|++|.++. ...... ...+..|....+..|....+.|.
T Consensus 127 ~lid~~G~i~~~~~g~~~-~~~~~~~l~~~l~~l~~~~~~~~ 167 (198)
T 1zof_A 127 FLIDKNMKVRHAVINDLP-LGRNADEMLRMVDALLHFEEHGE 167 (198)
T ss_dssp EEEETTTEEEEEEEESSS-CCCHHHHHHHHHHHHHHHHSSCC
T ss_pred EEECCCCEEEEEEecCCC-CCCCHHHHHHHHHHHHHhhccCC
Confidence 36789999987 433332 23477889999998887666553
No 42
>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A
Probab=51.19 E-value=21 Score=21.02 Aligned_cols=32 Identities=9% Similarity=0.110 Sum_probs=17.6
Q ss_pred eeCCCCCEEE-eeeccCCCcchHHHHHHHHHHH
Q 034727 2 LRADDGSLIY-NHNGVGITTNNVAKYGSLILGL 33 (86)
Q Consensus 2 ~~~~~g~~~~-~~~~~g~~tnn~aEy~Ali~gL 33 (86)
|.|++|.++. ..........+..|..+++++|
T Consensus 124 lID~~G~I~~~~~~~~~~~~~~~~eil~~l~~L 156 (157)
T 4g2e_A 124 VIDKEGKVRYKWVSDDPTKEPPYDEIEKVVKSL 156 (157)
T ss_dssp EECTTSBEEEEEEESSTTCCCCHHHHHHHHHHT
T ss_pred EECCCCEEEEEEECCCCCCCCCHHHHHHHHHHh
Confidence 6789999876 3332222223455655555543
No 43
>3sgv_B Undecaprenyl pyrophosphate synthase; alpha/beta, transferase; HET: 2BJ; 1.61A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 3sgt_B* 3qas_B* 3sgx_A* 3sh0_B* 3th8_A* 4h2j_A* 4h2m_A* 4h2o_B* 4h38_A* 4h3a_A* ...
Probab=51.01 E-value=4.4 Score=27.29 Aligned_cols=36 Identities=17% Similarity=0.070 Sum_probs=30.4
Q ss_pred ccCCCcchHHHHHHHHHHHHHHHhcCCceEEEecch
Q 034727 15 GVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDS 50 (86)
Q Consensus 15 ~~g~~tnn~aEy~Ali~gL~~a~~~~~~~v~i~~DS 50 (86)
.++....+.+...++..-++.|.++|++.+++|.=|
T Consensus 36 gl~r~~GH~~G~~~l~~i~~~c~~lGI~~lTlYaFS 71 (253)
T 3sgv_B 36 GKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFS 71 (253)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECC-
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEc
Confidence 344566788999999999999999999999999766
No 44
>3bbn_K Ribosomal protein S11; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=48.38 E-value=12 Score=22.97 Aligned_cols=57 Identities=9% Similarity=0.047 Sum_probs=34.9
Q ss_pred eeCCCCCEEE-ee-eccC----CCcchHHHHHHHHHHHHHHHhcCCceEEEec-----chHHHHHHHh
Q 034727 2 LRADDGSLIY-NH-NGVG----ITTNNVAKYGSLILGLKYALQKGFFNFRVRG-----DSKLVHMQVC 58 (86)
Q Consensus 2 ~~~~~g~~~~-~~-~~~g----~~tnn~aEy~Ali~gL~~a~~~~~~~v~i~~-----DS~lvi~q~~ 58 (86)
|.|.+|.++. .+ ..+| ......|-+.|.....+.|.++|++.+.|.- -.+.+++.+.
T Consensus 45 iTD~~G~~i~~~SaG~~GfKg~rksTp~AA~~aa~~~~~~a~e~Gi~~v~V~vkG~G~GReaairaL~ 112 (140)
T 3bbn_K 45 VTDVRGRVVSWASAGTCGFRGTKRGTPFAAQTAAGNAIRTVVEQGMQRAEVMIKGPGLGRDAALRAIR 112 (140)
T ss_dssp EECSSSCEEEEEETTTSSCCTTSCSSHHHHHHHHTSGGGTSTTTCCCEEEEEEESCSTTSSHHHHHHH
T ss_pred EEcCCCCEEEEEeccceeEcccccCCHHHHHHHHHHHHHHHHHhCCeEEEEEEECCCCcHHHHHHHHH
Confidence 5688898886 33 3344 2333455555555667777889998877754 2245555554
No 45
>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=47.85 E-value=39 Score=19.62 Aligned_cols=38 Identities=13% Similarity=-0.026 Sum_probs=22.9
Q ss_pred CeeCCCCCEEEeeeccCCCcchHHHHHHHHHHHHHHHh
Q 034727 1 MLRADDGSLIYNHNGVGITTNNVAKYGSLILGLKYALQ 38 (86)
Q Consensus 1 v~~~~~g~~~~~~~~~g~~tnn~aEy~Ali~gL~~a~~ 38 (86)
+|.|++|.++...........+..+....+..|+....
T Consensus 115 ~lid~~G~i~~~~~g~~~~~~~~~~il~~l~~l~~~~~ 152 (161)
T 3drn_A 115 FVIDKKGIIRHIYNSQMNPANHVNEALKALKQIKEEEI 152 (161)
T ss_dssp EEECTTSBEEEEEECSSCTTHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCEEEEEEecCCCCCcCHHHHHHHHHHhhhhhc
Confidence 37899999986322211334566677777777665443
No 46
>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10
Probab=47.81 E-value=21 Score=22.42 Aligned_cols=35 Identities=11% Similarity=0.218 Sum_probs=23.5
Q ss_pred CeeCCCCCEEE-eeeccCCCcchHHHHHHHHHHHHHH
Q 034727 1 MLRADDGSLIY-NHNGVGITTNNVAKYGSLILGLKYA 36 (86)
Q Consensus 1 v~~~~~g~~~~-~~~~~g~~tnn~aEy~Ali~gL~~a 36 (86)
+|.|++|.++. ...... ...+..|....+.+|+..
T Consensus 151 ~liD~~G~I~~~~~g~~~-~~~~~~ell~~l~~l~~~ 186 (220)
T 1zye_A 151 FIIDPNGVIKHLSVNDLP-VGRSVEETLRLVKAFQFV 186 (220)
T ss_dssp EEECTTSBEEEEEEECTT-CCCCHHHHHHHHHHHHHT
T ss_pred EEECCCCEEEEEEecCCC-CCCCHHHHHHHHHHhhhh
Confidence 37899999987 333322 223678888888888654
No 47
>3qas_B Undecaprenyl pyrophosphate synthase; alpha-helix, isoprenoid biosynthesis, transferase; 1.70A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 1x09_A* 1x08_A*
Probab=47.52 E-value=4.9 Score=26.96 Aligned_cols=33 Identities=15% Similarity=0.072 Sum_probs=28.5
Q ss_pred CCcchHHHHHHHHHHHHHHHhcCCceEEEecch
Q 034727 18 ITTNNVAKYGSLILGLKYALQKGFFNFRVRGDS 50 (86)
Q Consensus 18 ~~tnn~aEy~Ali~gL~~a~~~~~~~v~i~~DS 50 (86)
....+.+.+.++..-+++|.++|++.+++|.-|
T Consensus 39 r~~GH~~G~~~l~~iv~~c~~~GI~~lTlYaFS 71 (253)
T 3qas_B 39 RAFGHKAGAKSVRRAVSFAANNGIEALTLYAFS 71 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCC
T ss_pred hhhhHHHHHHHHHHHHHHHHHCCCCEEEEEEec
Confidence 344577888999999999999999999999976
No 48
>1qmv_A Human thioredoxin peroxidase-B; peroxiredoxin, sulphinic acid; 1.7A {Homo sapiens} SCOP: c.47.1.10 PDB: 1qq2_A 2z9s_A 2rii_A 3hy2_A*
Probab=47.27 E-value=41 Score=20.33 Aligned_cols=37 Identities=16% Similarity=0.214 Sum_probs=24.3
Q ss_pred CeeCCCCCEEE-eeeccCCCcchHHHHHHHHHHHHHHHh
Q 034727 1 MLRADDGSLIY-NHNGVGITTNNVAKYGSLILGLKYALQ 38 (86)
Q Consensus 1 v~~~~~g~~~~-~~~~~g~~tnn~aEy~Ali~gL~~a~~ 38 (86)
+|.|++|.++. ...... ...+..|....+..|+....
T Consensus 129 ~lid~~G~i~~~~~g~~~-~~~~~~e~l~~l~~l~~~~~ 166 (197)
T 1qmv_A 129 FIIDGKGVLRQITVNDLP-VGRSVDEALRLVQAFQYTDE 166 (197)
T ss_dssp EEECTTSBEEEEEEECTT-BCCCHHHHHHHHHHHHHHHH
T ss_pred EEECCCCcEEEEEeCCCC-CCCCHHHHHHHHHhcchhhc
Confidence 36789999987 333332 23467788888888876533
No 49
>2d2r_A Undecaprenyl pyrophosphate synthase; prenyltransferase, transferase; 1.88A {Helicobacter pylori} PDB: 2dtn_A
Probab=44.65 E-value=6.1 Score=26.35 Aligned_cols=33 Identities=6% Similarity=-0.160 Sum_probs=27.8
Q ss_pred CCcchHHHHHHHHHHHHHHHhcCCceEEEecch
Q 034727 18 ITTNNVAKYGSLILGLKYALQKGFFNFRVRGDS 50 (86)
Q Consensus 18 ~~tnn~aEy~Ali~gL~~a~~~~~~~v~i~~DS 50 (86)
....+.+.+.++..-++.|.++|++.+++|.-|
T Consensus 37 ~~~GH~~G~~~l~~iv~~c~~~GI~~lTlYaFS 69 (245)
T 2d2r_A 37 RAYGHKKGVKTLKDITIWCANHKLECLTLYAFS 69 (245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCSEEEEECC-
T ss_pred hhhhHHHHHHHHHHHHHHHHHcCCCEEEEEecc
Confidence 334567888999999999999999999999965
No 50
>3u5c_O RP59A, 40S ribosomal protein S14-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_K 3o30_H 3o2z_H 3u5g_O 1s1h_K 3jyv_K*
Probab=43.34 E-value=31 Score=20.99 Aligned_cols=47 Identities=11% Similarity=-0.043 Sum_probs=31.3
Q ss_pred eeCCCCCEEE--eeeccC----C-CcchHHHHHHHHHHHHHHHhcCCceEEEec
Q 034727 2 LRADDGSLIY--NHNGVG----I-TTNNVAKYGSLILGLKYALQKGFFNFRVRG 48 (86)
Q Consensus 2 ~~~~~g~~~~--~~~~~g----~-~tnn~aEy~Ali~gL~~a~~~~~~~v~i~~ 48 (86)
|.|++|.++. .+..+| . .....|-..|.....+.|.++|++.+.|.-
T Consensus 30 vTD~~G~~~~~~ssG~~gfKg~r~ksTpyAAq~aa~~~a~~a~e~Gi~~v~V~v 83 (137)
T 3u5c_O 30 VTDLSGKETIARVTGGMKVKADRDESSPYAAMLAAQDVAAKCKEVGITAVHVKI 83 (137)
T ss_dssp CEETTSSSCCCCCBTTTTSCCSTTTTCHHHHHHHHHHHHHHHHHHTCCEEECEE
T ss_pred EEcCCCCEEEEEeCCCcEEeCCcccCCHHHHHHHHHHHHHHHHHcCCeEEEEEE
Confidence 4577888653 333443 2 244566666667888889999999877765
No 51
>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL biogenesis/degradation, cell cycle, P transferase; HET: GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A* 2vg4_A
Probab=39.75 E-value=5.9 Score=27.06 Aligned_cols=31 Identities=13% Similarity=-0.109 Sum_probs=26.9
Q ss_pred cchHHHHHHHHHHHHHHHhcCCceEEEecch
Q 034727 20 TNNVAKYGSLILGLKYALQKGFFNFRVRGDS 50 (86)
Q Consensus 20 tnn~aEy~Ali~gL~~a~~~~~~~v~i~~DS 50 (86)
..+.+.+.++..-+++|.++|++.+.+|.-|
T Consensus 79 ~GH~~G~~~l~~iv~~c~~lGI~~LTlYaFS 109 (284)
T 2vg3_A 79 EGHKMGEAVVIDIACGAIELGIKWLSLYAFS 109 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEecc
Confidence 3457788999999999999999999999965
No 52
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A*
Probab=38.96 E-value=31 Score=20.42 Aligned_cols=48 Identities=13% Similarity=-0.000 Sum_probs=30.0
Q ss_pred CeeCCCCCEEE-eeeccCCCcchHHHHHHHHHHHHHHHhcCCceEEEecch
Q 034727 1 MLRADDGSLIY-NHNGVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDS 50 (86)
Q Consensus 1 v~~~~~g~~~~-~~~~~g~~tnn~aEy~Ali~gL~~a~~~~~~~v~i~~DS 50 (86)
+|++.+|+++. .... ...-...||-.|+..+... -...++.+.+++|.
T Consensus 32 al~~~dG~i~~G~NvE-~~~~t~cAE~~Ai~~A~~~-G~~~~~~i~vv~~~ 80 (130)
T 2z3g_A 32 AALSSDGRIFTGVNVY-HFTGGPCAELVVLGTAAAA-AAGNLTCIVAIGNE 80 (130)
T ss_dssp EEEETTSCEEEEECCC-CTTTCCCHHHHHHHHHHHT-TCCCEEEEEEEETT
T ss_pred EEEecCCeEEEEeccc-cCCcccCHHHHHHHHHHHc-CCCceEEEEEEECC
Confidence 36778898876 2222 1222568999998887752 12346777888765
No 53
>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10
Probab=38.35 E-value=44 Score=19.93 Aligned_cols=38 Identities=11% Similarity=0.107 Sum_probs=24.5
Q ss_pred CeeCCCCCEEE-eeeccCCCcchHHHHHHHHHHHHHHHhc
Q 034727 1 MLRADDGSLIY-NHNGVGITTNNVAKYGSLILGLKYALQK 39 (86)
Q Consensus 1 v~~~~~g~~~~-~~~~~g~~tnn~aEy~Ali~gL~~a~~~ 39 (86)
+|.|++|.++. ..... ....+..|....+..|....+.
T Consensus 123 ~lid~~G~i~~~~~g~~-~~~~~~~~l~~~l~~l~~~~~~ 161 (187)
T 1we0_A 123 FIIDPDGVIQAIEINAD-GIGRDASTLINKVKAAQYVREN 161 (187)
T ss_dssp EEECTTSBEEEEEEECT-TSCCCTTHHHHHHHHHHHHHTS
T ss_pred EEECCCCeEEEEEecCC-CCCCCHHHHHHHHHHHhhhhhC
Confidence 37889999987 33322 2223567778888887765554
No 54
>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A*
Probab=37.98 E-value=32 Score=20.56 Aligned_cols=47 Identities=19% Similarity=0.174 Sum_probs=30.6
Q ss_pred CeeCCCCCEEEeeeccCCCc---chHHHHHHHHHHHHHHHhcCCceEEEecc
Q 034727 1 MLRADDGSLIYNHNGVGITT---NNVAKYGSLILGLKYALQKGFFNFRVRGD 49 (86)
Q Consensus 1 v~~~~~g~~~~~~~~~g~~t---nn~aEy~Ali~gL~~a~~~~~~~v~i~~D 49 (86)
+|++.+|+++. +......+ ...||-.|+..+... -...++.+.++++
T Consensus 29 al~~~dG~i~~-G~Nvena~~~~t~cAE~~Ai~~A~~~-G~~~~~~~~l~~~ 78 (136)
T 1uwz_A 29 ALLTKDGKVYR-GCNIENAAYSMCNCAEATALFKAVSE-GDTEFQMLAVAAD 78 (136)
T ss_dssp EEEETTSCEEE-EECBCCSSGGGCBCHHHHHHHHHHHH-TCCCEEEEEEEES
T ss_pred EEEeCCCeEEE-EeCcccCCCCCccCHHHHHHHHHHHC-CCCCeEEEEEEeC
Confidence 36777888874 33343333 357899998887754 2234678888876
No 55
>2qnt_A AGR_C_3434P, uncharacterized protein ATU1872; glyoxalase/bleomycin resistance protein/dioxygenase family R protein, PSI-2, MCSG; HET: MSE EPE; 1.40A {Agrobacterium tumefaciens str}
Probab=36.24 E-value=25 Score=19.70 Aligned_cols=21 Identities=19% Similarity=0.216 Sum_probs=12.3
Q ss_pred eeCCCCCEEEeeeccCCCcch
Q 034727 2 LRADDGSLIYNHNGVGITTNN 22 (86)
Q Consensus 2 ~~~~~g~~~~~~~~~g~~tnn 22 (86)
++||+|..+.+.+......++
T Consensus 114 ~~DPdG~~iel~~~~~~~~~~ 134 (141)
T 2qnt_A 114 FYDPDGHAIEVGESLSQSGEN 134 (141)
T ss_dssp EECTTCCEEEEEECC------
T ss_pred EECCCCCEEEEEecchHHHHH
Confidence 689999999866665544443
No 56
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A
Probab=35.38 E-value=64 Score=18.49 Aligned_cols=32 Identities=9% Similarity=0.119 Sum_probs=18.4
Q ss_pred CeeCCCCCEEEeeeccCCCcchHHHHHHHHHHH
Q 034727 1 MLRADDGSLIYNHNGVGITTNNVAKYGSLILGL 33 (86)
Q Consensus 1 v~~~~~g~~~~~~~~~g~~tnn~aEy~Ali~gL 33 (86)
+|.|++|.++...... .......|....+..|
T Consensus 129 ~lid~~G~i~~~~~~~-~~~~~~~~il~~l~~l 160 (163)
T 3gkn_A 129 FLLSPEGQVVQAWRKV-KVAGHADAVLAALKAH 160 (163)
T ss_dssp EEECTTSCEEEEECSC-CSTTHHHHHHHHHHHH
T ss_pred EEECCCCeEEEEEcCC-CcccCHHHHHHHHHHH
Confidence 3789999998732222 2334555655555443
No 57
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=33.90 E-value=33 Score=20.85 Aligned_cols=48 Identities=15% Similarity=0.128 Sum_probs=30.9
Q ss_pred CeeCCCCCEEEeeeccCCCc---chHHHHHHHHHHHHHHHhcCCceEEEecch
Q 034727 1 MLRADDGSLIYNHNGVGITT---NNVAKYGSLILGLKYALQKGFFNFRVRGDS 50 (86)
Q Consensus 1 v~~~~~g~~~~~~~~~g~~t---nn~aEy~Ali~gL~~a~~~~~~~v~i~~DS 50 (86)
+|++.+|+++. +......+ ...||-.|+..+... -...++.+.+++|+
T Consensus 41 al~~~dG~i~~-G~NvEnas~~~t~cAE~~Ai~~A~~~-G~~~l~~i~v~~~~ 91 (146)
T 2fr5_A 41 ALLTGDGRIFS-GCNIENACYPLGVCAERTAIQKAISE-GYKDFRAIAISSDL 91 (146)
T ss_dssp EEEETTSCEEE-EECBCCSSGGGCBCHHHHHHHHHHHT-TCCCEEEEEEEESC
T ss_pred EEEeCCCcEEE-EEeccccCCCCCcCHHHHHHHHHHhC-CCCceEEEEEEeCC
Confidence 36677888875 33333332 368999999887753 22345788888874
No 58
>1r5t_A Cytidine deaminase; zinc dependent deaminase, RNA editing, apobec-1 related protein, hydrolase; 2.00A {Saccharomyces cerevisiae} SCOP: c.97.1.1
Probab=33.64 E-value=34 Score=20.57 Aligned_cols=49 Identities=16% Similarity=0.190 Sum_probs=30.9
Q ss_pred eeCCCCCEEEeeeccCCC---cchHHHHHHHHHHHHHHHhcCCceEEEecchH
Q 034727 2 LRADDGSLIYNHNGVGIT---TNNVAKYGSLILGLKYALQKGFFNFRVRGDSK 51 (86)
Q Consensus 2 ~~~~~g~~~~~~~~~g~~---tnn~aEy~Ali~gL~~a~~~~~~~v~i~~DS~ 51 (86)
+++.+|+++. +..+..+ ....||-.|+..+...-....++.+.+.+|+.
T Consensus 38 l~~~dG~i~~-G~NvEnasy~~t~cAEr~Ai~~a~~~G~~~~i~~i~vv~~~~ 89 (142)
T 1r5t_A 38 ILTNNDVIFT-GANVENASYSNCICAERSAMIQVLMAGHRSGWKCMVICGDSE 89 (142)
T ss_dssp EECTTSCEEE-EECBCCSSGGGCBCHHHHHHHHHHHTTCCSCCCEEEEEESCS
T ss_pred EEeCCCCEEE-EEeecccCCCCCcCHHHHHHHHHHHcCCCCceEEEEEEeCCC
Confidence 6778898775 2223322 34689999998877532221277888888753
No 59
>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=31.66 E-value=73 Score=19.13 Aligned_cols=33 Identities=9% Similarity=0.170 Sum_probs=20.9
Q ss_pred CeeCCCCCEEE-eeeccCCCcchHHHHHHHHHHHH
Q 034727 1 MLRADDGSLIY-NHNGVGITTNNVAKYGSLILGLK 34 (86)
Q Consensus 1 v~~~~~g~~~~-~~~~~g~~tnn~aEy~Ali~gL~ 34 (86)
+|.|++|.++. .....+ ...+..|....+..|.
T Consensus 136 ~lid~~G~i~~~~~g~~~-~~~~~~~l~~~l~~l~ 169 (195)
T 2bmx_A 136 FIVDPNNEIQFVSATAGS-VGRNVDEVLRVLDALQ 169 (195)
T ss_dssp EEECTTSBEEEEEEECTT-CCCCHHHHHHHHHHHH
T ss_pred EEEcCCCeEEEEEecCCC-CCCCHHHHHHHHHHHh
Confidence 37889999987 433332 2235677777777664
No 60
>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}
Probab=31.16 E-value=81 Score=18.74 Aligned_cols=31 Identities=6% Similarity=-0.018 Sum_probs=17.5
Q ss_pred eeCCCCCEEEeeeccCCCcchHHHHHHHHHHH
Q 034727 2 LRADDGSLIYNHNGVGITTNNVAKYGSLILGL 33 (86)
Q Consensus 2 ~~~~~g~~~~~~~~~g~~tnn~aEy~Ali~gL 33 (86)
|.|++|.++...... ....+..|....+..|
T Consensus 146 lID~~G~I~~~~~~~-~~~~~~~~il~~l~~l 176 (179)
T 3ixr_A 146 LIGPTHRIVEAWRQV-KVPGHAEEVLNKLKAH 176 (179)
T ss_dssp EECTTSBEEEEECSC-CSTTHHHHHHHHHHHH
T ss_pred EECCCCEEEEEEcCC-CCCCCHHHHHHHHHHH
Confidence 789999998732221 2233455555555443
No 61
>2hjj_A Hypothetical protein YKFF; northeast structural genomics consortium (NESG), PROT structure initiative., PSI-2, structural genomics, unknown; NMR {Escherichia coli} SCOP: d.50.3.3
Probab=28.87 E-value=29 Score=19.49 Aligned_cols=16 Identities=19% Similarity=0.470 Sum_probs=12.0
Q ss_pred CeeCCCCCEEE-eeecc
Q 034727 1 MLRADDGSLIY-NHNGV 16 (86)
Q Consensus 1 v~~~~~g~~~~-~~~~~ 16 (86)
|||+++|+.++ ...+-
T Consensus 40 VVR~~eg~mvWR~wnFE 56 (87)
T 2hjj_A 40 VVRDTEGRMVWRAWNFE 56 (87)
T ss_dssp EEECSSCCEEEEEESSS
T ss_pred EEEcCCCcEEEEeeccC
Confidence 68899999998 54443
No 62
>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A
Probab=28.36 E-value=51 Score=18.84 Aligned_cols=30 Identities=3% Similarity=0.078 Sum_probs=16.3
Q ss_pred CeeCCCCCEEE-eeeccCCCcchHHHHHHHHH
Q 034727 1 MLRADDGSLIY-NHNGVGITTNNVAKYGSLIL 31 (86)
Q Consensus 1 v~~~~~g~~~~-~~~~~g~~tnn~aEy~Ali~ 31 (86)
+|.|++|.++. ..... .......++...+.
T Consensus 126 ~lid~~G~i~~~~~g~~-~~~~~~~~l~~~l~ 156 (160)
T 1xvw_A 126 FVVDRSGIIRFAEMKQP-GEVRDQRLWTDALA 156 (160)
T ss_dssp EEECTTSBEEEEEECCT-TCCCCHHHHHHHHH
T ss_pred EEECCCCeEEEEEecCC-CCCCCHHHHHHHHH
Confidence 37899999987 33332 22223445544444
No 63
>2v2f_A Penicillin binding protein 1A; transpeptidase activity, peptidoglycan synthesis, transferase, hydrolase; HET: MES; 1.9A {Streptococcus pneumoniae} PDB: 2zc5_A* 2zc6_A*
Probab=28.32 E-value=26 Score=14.56 Aligned_cols=11 Identities=18% Similarity=0.256 Sum_probs=8.7
Q ss_pred CeeCCCCCEEE
Q 034727 1 MLRADDGSLIY 11 (86)
Q Consensus 1 v~~~~~g~~~~ 11 (86)
.|+|.+|+++.
T Consensus 8 ~IYD~~g~~i~ 18 (26)
T 2v2f_A 8 KIYDNKNQLIA 18 (26)
T ss_pred EEEeCCCCEee
Confidence 37888998875
No 64
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}
Probab=27.93 E-value=80 Score=17.62 Aligned_cols=31 Identities=19% Similarity=0.337 Sum_probs=19.7
Q ss_pred CeeCCCCCEEEeeeccCCCcchHHHHHHHHHHH
Q 034727 1 MLRADDGSLIYNHNGVGITTNNVAKYGSLILGL 33 (86)
Q Consensus 1 v~~~~~g~~~~~~~~~g~~tnn~aEy~Ali~gL 33 (86)
+|.|++|.++. ...|....+..++...+..+
T Consensus 110 ~lid~~G~i~~--~~~g~~~~~~~~l~~~i~~~ 140 (152)
T 3gl3_A 110 FLIDRNGKVLL--QHVGFRPADKEALEQQILAA 140 (152)
T ss_dssp EEECTTSBEEE--EEESCCTTTHHHHHHHHHHH
T ss_pred EEECCCCCEEE--EEccCCCcCHHHHHHHHHHH
Confidence 36789999875 22344445566777666654
No 65
>3itw_A Protein TIOX; bleomycin resistance fold, bisintercalator, solvent-exposed residue, thiocoraline, protein binding, peptide binding Pro; 2.15A {Micromonospora SP}
Probab=27.04 E-value=41 Score=18.68 Aligned_cols=17 Identities=18% Similarity=0.067 Sum_probs=12.6
Q ss_pred eeCCCCCEEEeeeccCC
Q 034727 2 LRADDGSLIYNHNGVGI 18 (86)
Q Consensus 2 ~~~~~g~~~~~~~~~g~ 18 (86)
++||+|..+.+.+.+..
T Consensus 109 ~~DPdG~~iel~~~~~~ 125 (137)
T 3itw_A 109 VRDLEGHLWEFTRHLRD 125 (137)
T ss_dssp EECSSSCEEEEEECC--
T ss_pred EECCCCCEEEEEEEcCC
Confidence 68999999997666643
No 66
>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10
Probab=26.76 E-value=68 Score=18.62 Aligned_cols=10 Identities=20% Similarity=0.471 Sum_probs=8.7
Q ss_pred eeCCCCCEEE
Q 034727 2 LRADDGSLIY 11 (86)
Q Consensus 2 ~~~~~g~~~~ 11 (86)
|.|++|.++.
T Consensus 131 liD~~G~i~~ 140 (163)
T 1psq_A 131 VLDTDNTIRY 140 (163)
T ss_dssp EECTTCBEEE
T ss_pred EEcCCCeEEE
Confidence 7899999987
No 67
>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}
Probab=26.26 E-value=45 Score=20.58 Aligned_cols=38 Identities=11% Similarity=0.030 Sum_probs=25.0
Q ss_pred CeeCCCCCEEEeeeccCC-CcchHHHHHHHHHHHHHHHh
Q 034727 1 MLRADDGSLIYNHNGVGI-TTNNVAKYGSLILGLKYALQ 38 (86)
Q Consensus 1 v~~~~~g~~~~~~~~~g~-~tnn~aEy~Ali~gL~~a~~ 38 (86)
|+.+++|.++....+++. ..-+..++..++..+..+++
T Consensus 109 v~l~~dG~~v~~~ty~p~~~~~~~~~f~~~L~~v~~~~~ 147 (173)
T 3ira_A 109 IIMTPGKKPFFAGTYIPKNTRFNQIGMLELVPRIKEIWE 147 (173)
T ss_dssp EEECTTSCEEEEESSCCSSCBTTBCCHHHHHHHHHHHHH
T ss_pred eeECCCCCceeeeeeCCCCcCCCCCCHHHHHHHHHHHHH
Confidence 467899999986556643 34455667777776665554
No 68
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=25.67 E-value=73 Score=22.34 Aligned_cols=45 Identities=4% Similarity=-0.172 Sum_probs=31.3
Q ss_pred CCEEE-eeeccC----CCcchHHHHHHHHHHHHHHHh-cCCceEEEecchH
Q 034727 7 GSLIY-NHNGVG----ITTNNVAKYGSLILGLKYALQ-KGFFNFRVRGDSK 51 (86)
Q Consensus 7 g~~~~-~~~~~g----~~tnn~aEy~Ali~gL~~a~~-~~~~~v~i~~DS~ 51 (86)
+.++. .+..+. ..+..+.|..|++.|++.... +.-+++.+++|++
T Consensus 370 ~~~i~y~Sk~l~~~e~~ys~~ekEllAi~~a~~~~~~yl~g~~~~v~tDh~ 420 (455)
T 1rw3_A 370 RRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMGQPLVIKAPHA 420 (455)
T ss_dssp TCCCCCCCBCSCSSCSSSCCSSHHHHHHHHHHHHHHGGGCSSCEEEECSSC
T ss_pred EEEEEEEcccCCccccccchHHHHHHHHHHHHHHHHHHcCCCcEEEEecCh
Confidence 34555 555443 234468899999999987654 3337899999996
No 69
>2ph0_A Uncharacterized protein; Q6D2T7, ERWCT, NESG, EWR41, structural genomics, PSI-2, protein structure initiative; 1.85A {Pectobacterium carotovorum}
Probab=24.93 E-value=85 Score=19.54 Aligned_cols=37 Identities=14% Similarity=0.199 Sum_probs=21.5
Q ss_pred eeCCCCCEEEeeeccCCCcc------hHHHHHHHHHHHHHHHhc
Q 034727 2 LRADDGSLIYNHNGVGITTN------NVAKYGSLILGLKYALQK 39 (86)
Q Consensus 2 ~~~~~g~~~~~~~~~g~~tn------n~aEy~Ali~gL~~a~~~ 39 (86)
+.|.+|..+. ..|+++.++ +.+.|.+|+..+.....+
T Consensus 125 fFD~~G~ai~-Kif~~r~~~~~l~~eq~~aw~~L~~~l~~~~~~ 167 (174)
T 2ph0_A 125 FFNANGAAMF-KIFLGRDSHRQLLSAQVDAFRALASELQPEQVL 167 (174)
T ss_dssp EECTTSCEEE-EEECCBCTTSCBCHHHHHHHHHHHHHHC-----
T ss_pred EECCCCCEEE-EEEeccCCCcccCHHHHHHHHHHHHHhcchhhh
Confidence 4678888884 334444433 458899998887655443
No 70
>4gym_A Glyoxalase/bleomycin resistance protein/dioxygena; PSI-biology, midwest center for structural genomics, MCSG, oxidoreductase; HET: MSE; 1.56A {Conexibacter woesei}
Probab=24.77 E-value=58 Score=18.41 Aligned_cols=12 Identities=25% Similarity=0.152 Sum_probs=10.0
Q ss_pred eeCCCCCEEEee
Q 034727 2 LRADDGSLIYNH 13 (86)
Q Consensus 2 ~~~~~g~~~~~~ 13 (86)
++||||..++..
T Consensus 120 f~DPDGn~iEi~ 131 (149)
T 4gym_A 120 FHDLDGHLWEVM 131 (149)
T ss_dssp EECTTCCEEEEE
T ss_pred EEcCCCCEEEEE
Confidence 689999999843
No 71
>3m2o_A Glyoxalase/bleomycin resistance protein; unknown function, structural genomics, putative glyoxylase/B resistance protein; HET: PG4; 1.35A {Rhodopseudomonas palustris} PDB: 3vcx_A*
Probab=23.52 E-value=49 Score=19.34 Aligned_cols=16 Identities=19% Similarity=0.123 Sum_probs=11.2
Q ss_pred eeCCCCCEEEeeeccC
Q 034727 2 LRADDGSLIYNHNGVG 17 (86)
Q Consensus 2 ~~~~~g~~~~~~~~~g 17 (86)
++||+|..+.+.+..+
T Consensus 131 ~~DPdG~~iel~~~~~ 146 (164)
T 3m2o_A 131 TADPNGVLIDIIKPIP 146 (164)
T ss_dssp EECTTCCEEEEEC---
T ss_pred EECCCCCEEEEEEECC
Confidence 7899999998666654
No 72
>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10
Probab=23.40 E-value=74 Score=18.68 Aligned_cols=31 Identities=19% Similarity=0.046 Sum_probs=18.3
Q ss_pred CeeCCCCCEEEeeeccCCCcchHHHHHHHHHHH
Q 034727 1 MLRADDGSLIYNHNGVGITTNNVAKYGSLILGL 33 (86)
Q Consensus 1 v~~~~~g~~~~~~~~~g~~tnn~aEy~Ali~gL 33 (86)
+|.|++|.++.. +.|..+-+..+....+..|
T Consensus 148 ~lid~~G~i~~~--~~g~~~~~~~~l~~~l~~l 178 (186)
T 1jfu_A 148 VLVDPQGCEIAT--IAGPAEWASEDALKLIRAA 178 (186)
T ss_dssp EEECTTSBEEEE--EESCCCTTSHHHHHHHHHH
T ss_pred EEECCCCCEEEE--EecCCccCHHHHHHHHHHH
Confidence 367899999862 2344443445566555544
No 73
>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A
Probab=23.20 E-value=87 Score=17.98 Aligned_cols=30 Identities=17% Similarity=0.165 Sum_probs=16.3
Q ss_pred CeeCCCCCEEEeeeccCCCcchHHHHHHHHHH
Q 034727 1 MLRADDGSLIYNHNGVGITTNNVAKYGSLILG 32 (86)
Q Consensus 1 v~~~~~g~~~~~~~~~g~~tnn~aEy~Ali~g 32 (86)
+|.|++|.++.. +.|..+.+..+....+..
T Consensus 140 ~lid~~G~i~~~--~~g~~~~~~~~l~~~l~~ 169 (174)
T 1xzo_A 140 YLVGPDGKVLKD--YNGVENTPYDDIISDVKS 169 (174)
T ss_dssp EEECTTSEEEEE--EESSSSCCHHHHHHHHHH
T ss_pred EEECCCCeEEEE--EcCCCCCCHHHHHHHHHH
Confidence 367889998762 223333334555554443
No 74
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1
Probab=22.92 E-value=65 Score=19.42 Aligned_cols=48 Identities=23% Similarity=0.225 Sum_probs=30.3
Q ss_pred eeCCCCCEEEeeeccCC---CcchHHHHHHHHHHHHHHHhcCCceEEEecchH
Q 034727 2 LRADDGSLIYNHNGVGI---TTNNVAKYGSLILGLKYALQKGFFNFRVRGDSK 51 (86)
Q Consensus 2 ~~~~~g~~~~~~~~~g~---~tnn~aEy~Ali~gL~~a~~~~~~~v~i~~DS~ 51 (86)
+++.+|+++. +..+.. .....||-.|+..+... -...++.+.+.+|..
T Consensus 39 ll~~dG~i~~-G~NvEnasy~~t~CAEr~Ai~~Avs~-G~~~~~aiav~~~~~ 89 (141)
T 2d30_A 39 LLTQDGKVYR-GCNVENASYGLCNCAERTALFKAVSE-GDKEFVAIAIVADTK 89 (141)
T ss_dssp EEETTCCEEE-EECBCCSSGGGCBCHHHHHHHHHHHT-TCCCEEEEEEEESCS
T ss_pred EEeCCCCEEE-eeccccCCCCcccCHHHHHHHHHHHC-CCCceEEEEEEeCCC
Confidence 6677887775 222222 23468999999887643 123467888888754
No 75
>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A
Probab=22.26 E-value=97 Score=17.80 Aligned_cols=11 Identities=18% Similarity=0.764 Sum_probs=9.0
Q ss_pred CeeCCCCCEEE
Q 034727 1 MLRADDGSLIY 11 (86)
Q Consensus 1 v~~~~~g~~~~ 11 (86)
+|.|++|.++.
T Consensus 132 ~lid~~G~i~~ 142 (167)
T 2jsy_A 132 FVLDENGKVVY 142 (167)
T ss_dssp EEECTTSCEEE
T ss_pred EEEcCCCcEEE
Confidence 37889999987
No 76
>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A
Probab=21.70 E-value=1e+02 Score=18.70 Aligned_cols=10 Identities=20% Similarity=0.438 Sum_probs=8.6
Q ss_pred eeCCCCCEEE
Q 034727 2 LRADDGSLIY 11 (86)
Q Consensus 2 ~~~~~g~~~~ 11 (86)
|.|++|.++.
T Consensus 150 liD~~G~i~~ 159 (200)
T 2b7k_A 150 LMDPEGQFVD 159 (200)
T ss_dssp EECTTSCEEE
T ss_pred EECCCCcEEE
Confidence 6789999986
No 77
>3mpz_A Cytidine deaminase; ssgcid, structu genomics, seattle structural genomics center for infectious hydrolase; 1.70A {Mycobacterium smegmatis} PDB: 3ijf_X 4f3w_A
Probab=20.15 E-value=89 Score=19.14 Aligned_cols=49 Identities=12% Similarity=0.032 Sum_probs=30.0
Q ss_pred eeCCCCCEEE-eee-ccCCCcchHHHHHHHHHHHHHHHhcCCceEEEecchH
Q 034727 2 LRADDGSLIY-NHN-GVGITTNNVAKYGSLILGLKYALQKGFFNFRVRGDSK 51 (86)
Q Consensus 2 ~~~~~g~~~~-~~~-~~g~~tnn~aEy~Ali~gL~~a~~~~~~~v~i~~DS~ 51 (86)
++..+|+++. ... ...-.....||-.|+..+...- ...++.+.+.+|..
T Consensus 52 ll~~dG~i~tG~NvEnasy~~t~CAEr~Ai~~Avs~G-~~~i~aiavv~~~~ 102 (150)
T 3mpz_A 52 ALVDDGRTVTGCNVENVSYGLGLCAECAVVCALHSGG-GGRLVALSCVGPDG 102 (150)
T ss_dssp EEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTT-CCCEEEEEEECTTS
T ss_pred EEeCCCCEEEEEecccccCCccccHHHHHHHHHHHcC-CCceEEEEEEcCCC
Confidence 5677888885 222 1122235679999998876421 23456777777653
Done!