BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034729
(85 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O80543|Y1280_ARATH Putative methyltransferase At1g22800 OS=Arabidopsis thaliana
GN=At1g22800 PE=2 SV=2
Length = 355
Score = 136 bits (343), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 62/79 (78%), Positives = 70/79 (88%)
Query: 1 MGETNALLQRNKILNRETALATAAIYDSMFAAEDGSIPATFQVIFMTGWREHYSQPKPKR 60
MGETNALL+RNKILNRETA+ATAAIYDSMFA EDG+IPATFQVI+MTGWREH S P+ KR
Sbjct: 277 MGETNALLERNKILNRETAVATAAIYDSMFATEDGTIPATFQVIYMTGWREHSSHPQAKR 336
Query: 61 MGSATVSFKDIHKHFGSEN 79
GSATVSF D+ K FG ++
Sbjct: 337 RGSATVSFTDLQKQFGGQS 355
>sp|A3KP37|NDUF5_DANRE NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor
5 OS=Danio rerio GN=ndufaf5 PE=2 SV=1
Length = 321
Score = 90.9 bits (224), Expect = 2e-18, Method: Composition-based stats.
Identities = 40/73 (54%), Positives = 51/73 (69%)
Query: 1 MGETNALLQRNKILNRETALATAAIYDSMFAAEDGSIPATFQVIFMTGWREHYSQPKPKR 60
MGE+N R +L R+T LA AAIY M+ EDGS+PATFQ+++M GW+ H SQ KP +
Sbjct: 241 MGESNCAWNRKLLLQRDTMLAAAAIYKEMYGNEDGSVPATFQILYMIGWKPHDSQAKPAK 300
Query: 61 MGSATVSFKDIHK 73
GSA VSF D+ K
Sbjct: 301 RGSANVSFADLSK 313
>sp|Q5TEU4|NDUF5_HUMAN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor
5 OS=Homo sapiens GN=NDUFAF5 PE=1 SV=1
Length = 345
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 51/73 (69%)
Query: 1 MGETNALLQRNKILNRETALATAAIYDSMFAAEDGSIPATFQVIFMTGWREHYSQPKPKR 60
MGE+N R +L+R+T LA AA+Y M+ EDGS+PAT+Q+ +M GW+ H SQ +P
Sbjct: 261 MGESNCAWNRKALLHRDTMLAAAAVYREMYRNEDGSVPATYQIYYMIGWKYHESQARPAE 320
Query: 61 MGSATVSFKDIHK 73
GSATVSF ++ K
Sbjct: 321 RGSATVSFGELGK 333
>sp|B2GV71|NDUF5_RAT NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor
5 OS=Rattus norvegicus GN=Ndufaf5 PE=2 SV=1
Length = 343
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 51/73 (69%)
Query: 1 MGETNALLQRNKILNRETALATAAIYDSMFAAEDGSIPATFQVIFMTGWREHYSQPKPKR 60
MGE+N R +L+R+T LA AA+Y M++ EDGSIPAT+Q+ M GW+ H SQ +P
Sbjct: 261 MGESNCSWNRKALLHRDTMLAAAAVYREMYSNEDGSIPATYQIYHMIGWKYHDSQARPAE 320
Query: 61 MGSATVSFKDIHK 73
GSATVSF D+ +
Sbjct: 321 RGSATVSFGDLAR 333
>sp|Q5RBS1|NDUF5_PONAB NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor
5 OS=Pongo abelii GN=NDUFAF5 PE=2 SV=1
Length = 345
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 51/73 (69%)
Query: 1 MGETNALLQRNKILNRETALATAAIYDSMFAAEDGSIPATFQVIFMTGWREHYSQPKPKR 60
MGE+N R +L+R+T LA AA+Y M+ EDGS+PAT+Q+ +M GW+ H SQ +P
Sbjct: 261 MGESNCSWNRKALLHRDTMLAAAAVYREMYRNEDGSVPATYQIYYMIGWKYHESQARPAE 320
Query: 61 MGSATVSFKDIHK 73
GSATVSF ++ K
Sbjct: 321 RGSATVSFGELGK 333
>sp|A2APY7|NDUF5_MOUSE NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor
5 OS=Mus musculus GN=Ndufaf5 PE=2 SV=1
Length = 343
Score = 84.7 bits (208), Expect = 2e-16, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 50/73 (68%)
Query: 1 MGETNALLQRNKILNRETALATAAIYDSMFAAEDGSIPATFQVIFMTGWREHYSQPKPKR 60
MGE+N R +L+R+T LA AA+Y M+ EDGSIPATFQ+ M GW+ H SQ +P
Sbjct: 261 MGESNCSWNRKALLHRDTMLAAAAVYREMYRNEDGSIPATFQIYHMIGWKYHDSQARPAE 320
Query: 61 MGSATVSFKDIHK 73
GSATVSF ++ K
Sbjct: 321 RGSATVSFGELAK 333
>sp|Q54JW0|NDUF5_DICDI NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor
5 OS=Dictyostelium discoideum GN=ndufaf5 PE=3 SV=1
Length = 436
Score = 74.3 bits (181), Expect = 2e-13, Method: Composition-based stats.
Identities = 41/90 (45%), Positives = 56/90 (62%), Gaps = 5/90 (5%)
Query: 1 MGETNALLQRNKILNRETALATAAIYDSMFAAEDG-SIPATFQVIFMTGWREHYSQPKPK 59
MGE NA+L+R +++T LA +AIY ++ ED SIPATFQ+I++ GW H SQ KP
Sbjct: 267 MGENNAILKRRNYTSKDTFLAASAIYKHLYGNEDNNSIPATFQIIYLIGWAPHESQQKPL 326
Query: 60 RMGSATVSFKDIH--KHFGS--ENQSAQPS 85
+ GSA F +I FG +N S+ PS
Sbjct: 327 QRGSAKKHFSEISGTSSFGYKFDNDSSIPS 356
>sp|B2IAI0|BIOC_XYLF2 Malonyl-CoA O-methyltransferase BioC OS=Xylella fastidiosa (strain
M23) GN=bioC PE=3 SV=1
Length = 295
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 1 MGETNALLQRNKILN-RETALATAAIYDSMFAAEDGSIPATFQVIFMTGW 49
+G TNAL +R L R ATAA Y+++ A D +P++++VI+ W
Sbjct: 216 IGATNALQERRTTLTGRGRFAATAAAYETLRNA-DNKLPSSWEVIYACAW 264
>sp|C1D5S5|BIOC_LARHH Malonyl-CoA O-methyltransferase BioC OS=Laribacter hongkongensis
(strain HLHK9) GN=bioC PE=3 SV=1
Length = 297
Score = 32.3 bits (72), Expect = 0.92, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 1 MGETNALLQRNK-ILNRETALATAAIYDSMFAAEDGSIPATFQVIFMTGWREHYSQPKPK 59
+G NA R + ++ R+ A YD + +DG +PAT++V++ WR +P+
Sbjct: 225 IGAHNATAGRGRGLMGRQAWQRIEAAYDRL--RQDGRLPATYEVVYGHAWR---PAARPR 279
Query: 60 RMGSATVSFKDIHKH 74
R + H H
Sbjct: 280 RKLDDGRDIIEFHPH 294
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.127 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,466,436
Number of Sequences: 539616
Number of extensions: 894192
Number of successful extensions: 1566
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1557
Number of HSP's gapped (non-prelim): 9
length of query: 85
length of database: 191,569,459
effective HSP length: 56
effective length of query: 29
effective length of database: 161,350,963
effective search space: 4679177927
effective search space used: 4679177927
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)